#! /bin/sh # if defined, prepend R_SNOW_LIB to $_LIBS if test ! -z "${R_SNOW_LIB}" ; then R_LIBS=${R_SNOW_LIB}:${R_LIBS}; export R_LIBS fi # find the library containing the snow package; should eventually use Rscript snowdir=`echo 'invisible(cat(tryCatch(dirname(find.package("snow")), error = function(e) ""),"\n",sep=""))' | R --slave` # for now this hijacks the R_PROFILE mechanism to start up the R # sessions and load snow and Rmpi into them R_PROFILE=${snowdir}/snow/RMPISNOWprofile; export R_PROFILE if test ! -z "${LAMRANK}" ; then # use the LAMRANK environment variable set by LAM-MPI's mpirun to # run R with appropriate arguments for master and workers. if test "${LAMRANK}" -eq 0 ; then exec R $* else exec R --slave > /dev/null 2>&1 fi elif test ! -z "${MV2_COMM_WORLD_RANK}" ; then # For MVAPICH2 if test "${MV2_COMM_WORLD_RANK}" -eq 0 ; then exec R --no-save $* else exec R --slave > /dev/null 2>&1 fi elif test ! -z "${OMPI_MCA_ns_nds_vpid}" ; then # Similar approach for OpenMPI using the OMPI_MCA_ns_nds_vpid # variable. This is for backward compatibility with pre-1.3 # versions. The master R process thinks it is non-interactive so # for now --no-save or something like that is needed. if test "${OMPI_MCA_ns_nds_vpid}" -eq 0 ; then exec R --no-save $* else exec R --slave > /dev/null 2>&1 fi elif test ! -z "${OMPI_COMM_WORLD_RANK}" ; then # Similar approach for OpenMPI using the OMPI_COMM_WORLD_RANK # variable. This is the correct variable to use as of v1.3+. The # master R process thinks it is non-interactive so for now # --no-save or something like that is needed. if test "${OMPI_COMM_WORLD_RANK}" -eq 0 ; then exec R --no-save $* else exec R --slave > /dev/null 2>&1 fi else # The fallback is to use the same arguments on master and workers, # with --no-save for cases where workers don't have a terminal. # This means that things like CMD batch won't work. It seems to be # important NOT to use exec here, at least when this code runs under LAM. R --no-save $* fi