!!!!!!!!!!!!
!          !
!  dui.ad  !
!          !
!!!!!!!!!!!!

!  This file must be in same directory as "dui"  OR
!	there must be a link to dui.ad in this directory.

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                                 !
!  app-defaults file for DNA/GUI  !
!                                 !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                                                            !
!  General directions for changing resources.                !
!                                                            !
!  (1) Colors:  may be changed.                              !
!                                                            !
!  (2) Default colormap:  may be changed to any filename     !
!			  in the PALETTE directory.          !
!                                                            !
!  (3) Labels:	may be changed,                              !
!		but some label widths may be affected.       !
!                                                            !
!  (4) Fonts:	may be changed,                              !
!		but some label widths may be affected.       !
!                                                            !
!  (5) Widths/Heights:  should not be changed.               !
!                                                            !
!  (6) File Paths:  must be in same directory as "dui"       !
!                                                            !
!  (7) File browser filters:  may be changed.                !
!                                                            !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!


!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                                               !
!  Files used by DNA/GUI.                       !
!	Must be in same directory as "dui"      !
!                                               !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

! Location of color maps
*colorPath:				/home/psgendb/dat/DNA-GUI/PALETTE
! Location of comb files
*combPath:				/home/psgendb/dat/DNA-GUI/COMB
! Location of gel-format files
!  (formerly "blot" files)
*blotPath:				./
! Location of templates
*templatePath:				./
! Location of on-line help text files
*helptextPath:				/home/psgendb/dat/DNA-GUI/HELP
! Location of sequences (SSRP images)
*sequencePath:			 	/home/psgendb/dat/DNA-GUI/SEQUENCE
! Routine for SSRP images
*lfastaCommand:				/home/psgendb/bin/lfasta -a -n


!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                                             !
!  Default filters used by the file browsers  !
!                                             !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

! filter for color maps/tests
*colorFilter:				*.{pal,lut}
! filter used for comb file
*combFilter:				*.comb
! filter used for gel-format file
!  (formerly for "blot" file)
*blotFilter:				*.blot
! filter for templates
*templateFilter:			*.tmpl
! filter for sequences
*sequenceFilter:			*.seq
! filter for searching images
*imageFilter:				*.{imp,tif,tiff}


!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  The default colormap  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

*defaultColorMap:			bw.pal


!!!!!!!!!!!!!!!!!!!!!!!
!                     !
!  General Resources  !
!                     !
!!!!!!!!!!!!!!!!!!!!!!!

dui*font:			-*-helvetica-medium-r-normal-*-18-*-*-*-*-*-*-*
*connectPts:					True
*imageType:					1
*background:					black
*foreground: 					white
*borderColor:					gray
*borderWidth:					1

dui.geometry:					+0-1

*List.defaultColumns:				3
*List.borderWidth:				0

!  Amount to magnify original image when displayed in mag. box
*magFactor:					1

*Multi.translations:		#augment \n\
	<ButtonPress>:call()


!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                          !
!  File browser resources  !
!                          !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!

*SequenceFileBrowser.position:			WidgetRelative
*SequenceFileBrowser.offsetX:			0
*SequenceFileBrowser.offsetY:			0
*SequenceFileBrowser.fromWidget:		*image_form

*TemplateFileBrowser.position:			WidgetRelative
*TemplateFileBrowser.offsetX:			0
*TemplateFileBrowser.offsetY:			0
*TemplateFileBrowser.fromWidget:		*image_form

*BlotFileBrowser.position:			WidgetRelative
*BlotFileBrowser.offsetX:			0
*BlotFileBrowser.offsetY:			0
*BlotFileBrowser.fromWidget:			*image_form

*ImageFileBrowser.position:			WidgetRelative
*ImageFileBrowser.offsetX:			0
*ImageFileBrowser.offsetY:			0
*ImageFileBrowser.fromWidget:			*image_form

*ExtraImageFileBrowser.position:		WidgetRelative
*ExtraImageFileBrowser.offsetX:			0
*ExtraImageFileBrowser.offsetY:			0
*ExtraImageFileBrowser.fromWidget:		*image_form

*ColorFileBrowser.position:			WidgetRelative
*ColorFileBrowser.offsetX:			0
*ColorFileBrowser.offsetY:			0
*ColorFileBrowser.fromWidget:			*image_form
*ColorFileBrowser*Form*borderWidth:		1
*ColorFileBrowser*Form*foreground:		white


!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! 
!                                                                 !
!  Colors of lane and band markers, fragment sizes, and lane ids  !
!                                                                 !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! 

*laneColor:		blue
*band1Color:		red
*band2Color:		green
*band3Color:		blue
*fragsizeColor:		yellow
*laneindexstripeColor:	blue
*lanelabelstripeColor:	darkgreen
*laneinherstripeColor:	red
*trackprofileColor:	yellow
*allele0Color:		blue
*allele1Color:		magenta
*allele2Color:		cyan
*allele3Color:		orange
*allele4Color:		violet
*allele5Color:		gold
*allele6Color:		seagreen
*allele7Color:		salmon


!!!!!!!!!!!!!!!!!!!!
!                  !
!  Main Title Bar  !
!                  !
!!!!!!!!!!!!!!!!!!!!

*elder.elder_title.label:	DNA Graphical User Interface
*elder.elder_title.width:	1015
*elder.elder_title.height:	25
*elder.elder_title.borderWidth:	3
*elder.elder_title.background:	midnightblue
*elder.elder_title.foreground:	white


!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                                                            !
!  Form enclosing Menu, Status Info, and Image Info regions  !
!                                                            !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

*info_form*borderColor: white
*info_form.height:	210
dui*info_form*font:	-*-helvetica-medium-r-normal-*-18-*-*-*-*-*-*-*
dui*info_form*blot_id_form*font: -adobe-helvetica-medium-r-normal--10-*-*-*-*-*-*-*
dui*info_form*blot_id_form*blot_id_form_title*font: -adobe-helvetica-*-r-*-*-18-180-*-*-*-*-*-*

*future_button.label:	.

!!!!!!!!!!!!!!!
!             !
!  Main Menu  !
!             !
!!!!!!!!!!!!!!!

*command*foreground:	white
*command*width:		125
*command*command_title*label:			Commands
*command*command_title*width:			125
*command*command_title*foreground:		yellow
*command*command_title*background:		midnightblue
*command*command_operations*label:		Operations
*command*command_image*label:			Image 
*command*command_utilities*label:		Primary
*command*command_win_func*label:		Extra
*command*command_options*label:			Options
*command*command_profiles*label:		Profiles
*command*command_help*label:			Help
*command*command_exit*label:			Exit
*command*command_help*foreground:		green
*command*command_exit*foreground:		red
*command*command_help*width:			61
*command*command_exit*width:			61


!!!!!!!!!!!!!!!!!!!!!!!!
!                      !
!  Operations Submenu  !
!                      !
!!!!!!!!!!!!!!!!!!!!!!!!

*command*operations_commands*width:		125
*command*operations_commands*operations_title.width:	253 
*command*operations_title*label:		Operations Submenu
*command*operations_title*borderWidth:		1
*command*operations_title*background:		midnightblue
*command*operations_title*foreground:		yellow
*command*operations_open_image*label:		Open Image
*command*operations_id_info*label:		Enter Params 
*command*operations_crop_image*label:		Crop Image
*command*operations_id_lanes*label:		Lanes
*command*operations_id_marker_band*label:	Std Bands	
*command*operations_normalize*label:		Normalize 
*command*operations_id_exp_band*label:		Exp Bands
*command*operations_save_results*label:		Save Results
*command*operations_close_image*label:		Close Image
*command*operations_inheritance*label:		Inheritance
*command*operations_size_edit*label:		Size Edit
*command*operations_done*label:			Done 
*command*operations_done*foreground:		red


!!!!!!!!!!!!!!!!!!!
!                 !
!  Image Submenu  !
!                 !
!!!!!!!!!!!!!!!!!!!

*command*image_commands*width:			125
*command*image_commands*image_title.width:	253 
*command*image_title*label:			Image Submenu
*command*image_title*background:		midnightblue
*command*image_title*foreground:		yellow
*command*image_open*label:			Open Primary
*command*image_close*label:			Close Primary
*command*image_open_second*label:		Open Extra
*command*image_close_second*label:		Close Extra
*command*image_close_all_second*label:		Close All Extra
*command*image_pos_neg_image*label:		+ / -  Image	
!*command*image_new_box*label:			New Box
!*command*image_move_box*label:			Move Box
!*command*image_clear_box*label:		Clear Box
*command*image_new_box*label:			.
*command*image_move_box*label:			.
*command*image_clear_box*label:			.
*command*command_save_results*label:		Save Results
*command*image_done*label:			Done 
*command*image_done*foreground:			red


!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Primary Submenu  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

*command*utilities_commands*width:		125
*command*utilities_commands*utilities_title.width:	253 
*command*utilities_title*label:			Primary Submenu
*command*utilities_title*borderWidth:		1
*command*utilities_title*background:		midnightblue
*command*utilities_title*foreground:		yellow
*command*utilities_tracking*label:		Tracking 
*command*utilities_zoom*label:			Zoom Image 
*command*utilities_shrink*label:		Shrink Image 
*command*utilities_pan*label:			Pan Image 
*command*utilities_done*label:			Done 
*command*utilities_done*foreground:		red


!!!!!!!!!!!!!!!!!!!
!                 !
!  Extra Submenu  !
!                 !
!!!!!!!!!!!!!!!!!!!

*command*win_func_commands*width:		125
*command*win_func_commands*win_func_title.width:	253 
*command*win_func_title.label:			Extra Image Submenu
*command*win_func_title.borderWidth:		1
*command*win_func_title.background:		midnightblue
*command*win_func_title.foreground:		yellow
*command*move_object.label:		  	Move 
*command*resize_object.label:		  	Resize
*command*lower_object.label:		  	Lower	
*command*raise_object.label:		  	Raise	
*command*zoom_object.label:			Zoom
*command*shrink_object.label:			Shrink
*command*win_func_done.foreground:		red
*command*win_func_done.label:			Done
*command*expand_object.label:			Expand
*command*pan_object.label:			Pan
*command*wwwwww_object.label:			.
*command*xxxxxx_object.label:			.
*command*yyyyyy_object.label:			.
*command*zzzzzz_object.label:			.
*command*restore_object.label:			Restore


!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Options Submenu  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

*command*options_commands*width:		125
*command*options_commands*options_title.width:	253 
*command*options_title*label:			Options Submenu
*command*options_title*borderWidth:		1
*command*options_title*background:		midnightblue
*command*options_title*foreground:		yellow
*command*options_colormap*label:		Colormap 
*command*options_colorbar*label:		Colorbar 
*command*options_tracking*label:		Tracking	
*command*options_image_box*label:		Image Box	
*command*options_image_outline*label:		Image Bounds 
*command*options_image_coords*label:		Coordinates
*command*options_image_lane_windows*label: 	Overlays	
*command*options_color_vary*label:		Color Adjust
*command*options_template_edit*label:		Template Edit
*command*options_ccd_mode*label:		CCD Mode
*command*options_band_threshold*label:		Band Thresh
*command*options_lane_save_info*label:		Lane Save
*command*options_reset_bands*label:		Reset Bands
*command*options_done*label:			Done	
*command*options_done*foreground:		red


!!!!!!!!!!!!!!!!!!!!!!
!                    !
!  Profiles Submenu  !
!                    !
!!!!!!!!!!!!!!!!!!!!!!

*command*profile_commands*width:                125
*command*profile_commands*profile_title*width:	253
*command*profile_title*label:                   Profiles Submenu
*command*profile_title*borderWidth:             1
*command*profile_title*background:              midnightblue
*command*profile_title*foreground:              yellow
*command*new_profile*label:                     New Profile
*command*add_profile*label:                     Add Profile
*command*track_profile*label:                   Track Profile 
*command*remove_profile*label:                  Delete Profile
*command*remove_all_profiles*label:             Delete All
*command*profile_done*label:                    Done
*command*profile_done*foreground:               Red


!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                          !
!  Status Information Box  !
!                          !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!

! title
*status_box*foreground:				white
*status_box.status_box_title.label:		Status Information
!*status_box.status_box_title.width:		235
*status_box.status_box_title.width:		371
*status_box.status_box_title.height:		28
!*status_box.status_box_title.borderWidth:	1
*status_box.status_box_title.background: 	midnightblue
*status_box.status_box_title.foreground: 	yellow
! text area
!*status_box.status_box_text.width :		235
*status_box.status_box_text.width :		371
!*status_box.status_box_text.height:		170
*status_box.status_box_text.height:		200

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                               !
!  Information Information Box  !
!                               !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!


*blot_id_form.height:	210

! title
*blot_id_form_title*label:			Image Information
*blot_id_form_title*width:			242 
*blot_id_form_title*height:			28 
*blot_id_form_title*borderWidth:		1 
*blot_id_form_title*background:			midnightblue
*blot_id_form_title*foreground:			yellow
! box fields
*blot_id_form.id_gelformatname.label:		Gel Format:
*blot_id_form.id_templatename.label:		Template:
*blot_id_form.id_gelformatname.height:		24
*blot_id_form.id_templatename.height:		24
*blot_id_form.id_gelformatname.width:		70
*blot_id_form.id_templatename.width:		70
*blot_id_form*id_blot_type*height:		24
*blot_id_form*id_template_type*height:		24
*blot_id_form*id_blot_type*width:		165
*blot_id_form*id_template_type*width:		165
*blot_id_form*id_blot_type*topMargin:		4
*blot_id_form*id_template_type*topMargin:	4
*blot_id_form*id_blot_date*width:		110
*blot_id_form*id_operator*width:		110
*blot_id_form*id_exposure*width:		110
*blot_id_form*id_filter*width:			110
*blot_id_form*id_probe*width:			110
*blot_id_form*id_film*width:			110

! translations
! Note that the           .value widget is child widget of parent dialog widget
!                         ||||||
*blot_id_form.id_blot_date.value.translations: #augment \n\
	<LeaveWindow>:	updateBlotInfo()
*blot_id_form.id_operator.value.translations: #augment \n\
	<LeaveWindow>:	updateBlotInfo()
*blot_id_form.id_film.value.translations: #augment \n\
	<LeaveWindow>:	updateBlotInfo()
*blot_id_form.id_filter.value.translations: #augment \n\
	<LeaveWindow>:	updateBlotInfo()
*blot_id_form.id_exposure.value.translations: #augment \n\
	<LeaveWindow>:	updateBlotInfo()
*blot_id_form.id_probe.value.translations: #augment \n\
	<LeaveWindow>:	updateBlotInfo()


!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                          !
!  Image Region Resources  !
!                          !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!

!  Multi Widget
!
*image_form*borderColor:			white
*image_form.width:				1019
*image_form.height:				585
*primary_image.x:				0
*primary_image.y:				25	
!*image_form*image_form_image.background:	yellow
*image_form*image_form_image.background:	gray

!  Title Bar
!
*image_form*image_form_title*label:		Image 
*image_form*image_form_title*background:	midnightblue
*image_form*image_form_title*foreground:	yellow
*image_form*image_form_title*width:		1015
*image_form*image_form_title*height:		22

!  Space Holder
!
*image_form_space_holder.label:			
*image_form_space_holder.width:			77
*image_form_space_holder.height:		42
*image_form_space_holder.borderWidth:		0 

!  Fragment Tics
!
*image_form_frag_tics.label:			Frag Tics
*image_form_frag_tics.width:			75 
*image_form_frag_tics.height:			512 

!  Lane ID's
!
*image_form_lane_ids.label:			Lane IDS 
*image_form_lane_ids.width:			512 
*image_form_lane_ids.height:			40
*image_form_lane_ids*Command*height:	30
*image_form_lane_ids*Command*width:	95
dui*image_form_lane_ids*font: -adobe-helvetica-medium-r-normal--14-*-*-*-*-*-*-*

!  Pulldown menus
!
*misc_operations.label:		Operations
*misc_toggles.label:		Toggles
*misc_options.label:		Options
*misc_profiles.label:		Profiles
*misc_xxxxx.label:		.

!*misc_profiles.translations:\
	<EnterWindow>:	highlight()	\n\
	<LeaveWindow>:	reset()		\n\
	<BtnDown>: 	set() XtMenuPopup(profile_menu_shell) reset()
!*profile_menu_shell.translations:\
	<BtnUp>: XtMenuPopdown(profile_menu_shell)
!*profile_menu_box.Command.translations:\
	<EnterWindow>:	set()		\n\
	<LeaveWindow>:	unset()		\n\
	<BtnUp>:	notify() unset()
!*profile_menu_box.Command.width:	100
!*profile_pane0.label:	.
!*profile_pane1.label:	.
!*profile_pane2.label:	.
!*profile_pane3.label:	.
!*profile_pane4.label:	.
!*profile_pane5.label:	.
!*profile_pane6.label:	.
!*profile_pane7.label:	.
!*profile_pane8.label:	.
!*profile_pane9.label:	.

*misc_toggles.translations:\
	<EnterWindow>:	highlight()	\n\
	<LeaveWindow>:	reset()		\n\
	<BtnDown>: 	set() XtMenuPopup(toggle_menu_shell) reset()
*toggle_menu_shell.translations:\
	<BtnUp>: XtMenuPopdown(toggle_menu_shell)
*toggle_menu_box.Command.translations:\
	<EnterWindow>:	set()		\n\
	<LeaveWindow>:	unset()		\n\
	<BtnUp>:	notify() unset()
dui*toggle_menu_box*font: -adobe-helvetica-medium-r-normal--14-*-*-*-*-*-*-*
*toggle_menu_box.Command.width:	120
*toggle_pane0.label:	Colorbar
*toggle_pane1.label:	Color Adjust
*toggle_pane2.label:	Coordinates
*toggle_pane3.label:	Image Bounds
*toggle_pane4.label:	Image Box
*toggle_pane5.label:	Lane Save
*toggle_pane6.label:	Overlays
*toggle_pane7.label:	Tracking
*toggle_pane8.label:	.
*toggle_pane9.label:	.

!  Image
!
*image_form_image.width:			512
*image_form_image.height:			512
*image_form_image.x:				80
*image_form_image.y:				109
! remove unwanted traslations
*Image.translations:		#replace \n\
     <Btn1Up>: notify()

!  Magnify Box
!
*image_form_mag.width:				200
*image_form_mag.height:				200
!*image_form_mag.x:				596
*image_form_mag.x:				612
*image_form_mag.y:				25

!  ColorBar
!
!*image_form_colorbar.x:				596
*image_form_colorbar.x:				612
*image_form_colorbar.y:				230

!  Space Holder2
!
*image_form_space_holder2.x:			598
*image_form_space_holder2.y:			27
*image_form_space_holder2.width:		10
*image_form_space_holder2.height:		42
*image_form_space_holder2.borderWidth:		1 
dui*image_form_space_holder2*font:	-*-helvetica-medium-r-*-*-*-100-*-*-*-*-*-*
*image_form_allele_button.background:	magenta
*lane_index_button.background:		blue
*magnify_crop_button.background:	red
*image_form_allele_button.height:	10
*lane_index_button.height:		10
*magnify_crop_button.height:		10

!
!  Plus & Minus buttons
!
*image_form_plus_btn.label:	+
*image_form_minus_btn.label:	-

!
!  Image Form Vertical Scroll
*image_form_vert_scroll.x:		598
*image_form_vert_scroll.y:		70
*image_form_vert_scroll.orientation:	Vertical
*image_form_vert_scroll.foreground:	blue
*image_form_vert_scroll.background:	black
*image_form_vert_scroll.length:		512
*image_form_vert_scroll.thickness:	10
*image_form_vert_scroll.borderWidth:	1


!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                                !
!  Color Table Adjustments Menu  !
!                                !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

*cvStatusColor1:	black
*cvStatusColor2:	yellow
*cvStatusColor3:	red
*image_form_colorvary.width:			210
*image_form_colorvary.background:		midnightblue
!*image_form_colorvary.x:			640
*image_form_colorvary.x:			656
*image_form_colorvary.y:			230
dui*image_form_colorvary*font: -adobe-times-medium-r-normal--14-*-*-*-*-*-*-*

*cv_title.label:		Color Table Adjustments
*cv_title.width:		240
*cv_title.background:		midnightblue
*cv_title.foreground:		yellow
*cv_form_left.height:		300
*cv_form_right.height:		300
*cv_form_left.borderWidth:	1
*cv_form_right.borderWidth:	1
*cv_form_left.borderColor:	yellow
*cv_form_right.borderColor:	yellow
*cv_modes_label.label:				-- Mode --
*cv_modes_label.foreground:			yellow
*cv_modes_label_pick.label:			Pick
*cv_modes_label_pick.foreground:		yellow
*cv_modes_label_status.label:			Status
*cv_modes_label_status.foreground:		yellow
*cv_modes_label_status.horizDistance:		8
*cv_modes_list.borderWidth:	1
*cv_modes_list.borderColor:	yellow
*cv_modes_list.foreground:	yellow
*cv_modes_status.borderWidth:	0
*cv_modes_status.vertDistance:	1
*cv_modes_status.horizDistance:	10
*cv_modes_status*width:		20
*cv_modes_status_N.label:	N
*cv_modes_status_I.label:	I
*cv_modes_status_R.label:	R
*cv_modes_status_N.foreground:	black
*cv_modes_status_N.background:	white
*cv_modes_status_I.foreground:	white
*cv_modes_status_I.background:	black
*cv_modes_status_R.foreground:	white
*cv_modes_status_R.background:	black
*cv_guns_label.label:		Pick Guns
*cv_guns_label.foreground:	yellow
*cv_guns_list.borderWidth:	1
*cv_guns_list.borderColor:	yellow
*cv_guns_list.foreground:	yellow
*cv_guns_label.vertDistance:	10

*cv_thrs_label.label:		Threshold
*cv_thrs_value.label:		0.00
*cv_thrs_label.foreground:	white
*cv_thrs_value.foreground:	yellow
*cv_thrs_slider.orientation:	Horizontal
*cv_thrs_slider.foreground:	red
*cv_thrs_slider.length:		120
*cv_thrs_slider.height:		20
*cv_satr_label.label:		Saturation
*cv_satr_label.foreground:	white
*cv_satr_value.label:		1.00
*cv_satr_value.foreground:	yellow
*cv_satr_slider.orientation:	Horizontal
*cv_satr_slider.foreground:	red
*cv_satr_slider.length:		120
*cv_satr_slider.height:		20
*cv_gamm_label.label:		Gamma
*cv_gamm_value.label:		1.00
*cv_gamm_label.foreground:	white
*cv_gamm_value.foreground:	yellow
*cv_gamm_slider.orientation:	Horizontal
*cv_gamm_slider.foreground:	red
*cv_gamm_slider.length:		120
*cv_gamm_slider.height:		20
*cv_cont_label.label:		Contrast
*cv_cont_label.foreground:	white
*cv_cont_value.label:		1.00
*cv_cont_value.foreground:	yellow
*cv_cont_slider.orientation:	Horizontal
*cv_cont_slider.foreground:	red
*cv_cont_slider.length:		120
*cv_cont_slider.height:		20
*cv_bias_label.label:		Bias
*cv_bias_label.foreground:	white
*cv_bias_value.label:		0.00
*cv_bias_value.foreground:	yellow
*cv_bias_slider.orientation:	Horizontal
*cv_bias_slider.foreground:	red
*cv_bias_slider.length:		120
*cv_bias_slider.height:		20

*cv_cmds_form*vertDistance:	5
*cv_reset.label:		Reset
*cv_reset.background:		red
*cv_reset.foreground:		white
*cv_reset.borderWidth:		1
*cv_reset.width:		100
*cv_lut_button.label:		Color Palette Menu
*cv_lut_button.background:	darkgreen
*cv_lut_button.foreground:	white


!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Exit dialog box  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

! dialog message
!
*exit_shell.title:	Exit Popup
*exit_shell*exit_dialog*label:			\
	Are you sure that you want to Exit?\nMake sure results are saved.
*exit_shell*exit_dialog*height:			75
*exit_shell*exit_dialog*borderColor:		yellow
*exit_shell*exit_dialog*foreground:		yellow
*exit_shell*exit_dialog*background:		midnightblue

! exit button
!
*elder.exit_shell.exit_dialog.quit_rflp.label:	Exit
*elder.exit_shell.exit_dialog.quit_rflp.width:	130 
*elder.exit_shell.exit_dialog.quit_rflp.height:	20 

! cancel button
!
*elder.exit_shell.exit_dialog.cancel_rflp.label:	Cancel 
*elder.exit_shell.exit_dialog.cancel_rflp.width:	130 
*elder.exit_shell.exit_dialog.cancel_rflp.height:	20 

! save button
!
*elder.exit_shell.exit_dialog.save_rflp.label:	Save 
*elder.exit_shell.exit_dialog.save_rflp.width:	130 
*elder.exit_shell.exit_dialog.save_rflp.height:	20 


!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Help-list popup  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

*help_shell.title:	Help Popup
*help_form.foreground:	yellow
*help_form.background:	midnightblue
*help_form.width:	700
*help_form.height:	400
*help_quit.label:	Quit
*help_quit.background:	red
*help_quit.foreground:	yellow
*help_quit.width:	96
*help_title.width:	594
*help_title.label:	Select Topic For Help
*help_title.foreground: yellow
*help_title.borderColor:red
*help_list.foreground:  green
*help_list.background:  midnightblue
*help_list.width:	696
*help_list.height:	200
*help_list.borderWidth: 1
*help_list.borderColor: red


!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Help-item popup  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

*help_item_popup.title:		More Help
dui*help_item_popup*font:		-*-courier-medium-r-normal-*-14-*-*-*-*-*-*-*
*help_item_form.foreground:	yellow
*help_item_form.background:	black
*help_item_form.width:		700
*help_item_form.height:		400
*help_item_done.label:		Quit
*help_item_done.background:	red
*help_item_done.foreground:	yellow
*help_item_title.label:		Help for selected item
*help_item_title.width:		696
*help_item_title.background:	black
*help_item_title.foreground:	yellow
*help_item_text.width:		696
*help_item_text.height:		500
*help_item_text.background:	black
*help_item_text.foreground:	yellow


!!!!!!!!!!!!!!!!!!
!                !
!  TemplateEdit  !
!                !
!!!!!!!!!!!!!!!!!!

!  Colors for TemplateEdit
*teGridBackground:	black
*teGridForeground:	white
*teBandColor:		red
*teBandBorder:		white
*teStringBorder:	white
*teHighlightColor:	yellow

! TemplateEdit dialog message
!
*template_edit_popup.title:		Template Edit Dialog
*template_edit_dialog.label: 		Edit template bands ?
*template_edit_dialog.height:		75
*template_edit_dialog*borderWidth:	4 
*template_edit_dialog*foreground:	yellow
*template_edit_dialog*background:	midnightblue

! TemplateEdit "yes" button
!
*template_edit_yes.label:		Yes
*template_edit_yes.width:		100 
*template_edit_yes.height:		25 

! TemplateEdit "no" button
!
*template_edit_no.label:		No
*template_edit_no.width:		100 
*template_edit_no.height:		25 

! TemplateEdit "cancel" button
!
*template_edit_cancel.label:		Cancel
*template_edit_cancel.width:		100 
*template_edit_cancel.height:		25 


!!!!!!!!!!!!!!!
!             !
!  CCD Modes  !
!             !
!!!!!!!!!!!!!!!

*ccd_mode_popup.title:		CCD Modes Popup
dui*ccd_mode_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*ccd_mode_form.background:	black
*ccd_mode_form.foreground:	white
*ccd_mode_form.width:		700
*ccd_mode_form.height:		300
*ccd_mode_label.label:		Select CCD Mode
*ccd_mode_label.background:	midnightblue
*ccd_mode_label.foreground:	yellow
*ccd_mode_list.background:	black
*ccd_mode_list.foreground:	white

!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  Exp Bands Menu Popup  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

dui*bands_menu_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*bands_menu_popup.title:	Bands Menu Popup
*bands_menu_popup.label:	Bands Menu Popup
*bands_menu_form*background:	midnightblue
*bands_menu_form*foreground:	yellow
*bands_menu_form*width:		200
*bands_menu_title.foreground:	red
*bands_menu_title.borderColor:	red
*bands_menu_title.borderWidth:	2
*bands_menu_title.label:	Bands Process Menu
*bands_menu_kind.label:		Exp Bands
*bands_menu_kind.foreground:	white
*bands_menu_auto.label:		Automatic
*bands_menu_semiauto.label:	Semi-automatic
*bands_menu_manual.label:	Manual
*bands_menu_edit.label:		Edit
*bands_menu_clear.label:	Clear
*bands_menu_cancel.label:	Cancel

*bands_semi_popup.title:	Bands SemiAuto Popup
dui*bands_semi_popup*font:		 -*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*bands_semi_form*width:		200
*bands_semi_form*background:	midnightblue
*bands_semi_form*foreground:	yellow
*bands_semi_form*borderColor:	red
*bands_semi_title.label:	Toggle Semi-auto/Manual


!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  Band-threshold Popup  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

*band_threshold_popup.title:		Band Threshold Slider
dui*band_threshold_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*band_threshold_form.background:	black
*band_threshold_form.foreground:	yellow
*band_threshold_form.height:		100
*band_threshold_label.label:		Band Detection Sensitivity
*band_threshold_label.width:		375
*band_threshold_label.background:	midnightblue
*band_threshold_OK.label:		OK
*band_threshold_OK.width:		180
*band_threshold_reset.label:		Reset
*band_threshold_reset.width:		180
*band_threshold_max.label:		Fewer bands -->
*band_threshold_min.label:		<--  More bands
!*band_threshold_max.width:		150
!*band_threshold_min.width:		150
*band_threshold_value.width:		40
*band_threshold_value.foreground:	yellow
*band_threshold_slider.width:		360
*band_threshold_slider.height:		30
*band_threshold_slider.orientation:	Horizontal
*band_threshold_slider.foreground:	red
 

!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  ReferenceObject SSRP  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

*refobj_popup.title:		RefObj Popup
dui*refobj_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*refobj_form.background:	black
*refobj_form.foreground:	yellow
*refobj_form.width:		210
*refobj_label.label:		Reference / Object Bands
*refobj_label.width:		208
*refobj_label.background:	midnightblue
*refobj_cancel.label:		Cancel
*refobj_blank.label:		.
*refobj_cancel.width:		100
*refobj_blank.width:		100
*refobj_ref_label.label:	Reference\n G  A  T  C
*refobj_obj_label.label:	Object\n G  A  T  C
*refobj_ref_label.width:	100
*refobj_obj_label.width:	100
*refobj_ref_box.width:		100
*refobj_obj_box.width:		100
*refobj_ref_box.height:		300
*refobj_obj_box.height:		300

!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Size_Edit_Popup  !
!                   !
!!!!!!!!!!!!!!!!!!!!!
*size_edit_popup.title:		Size Edit Popup
dui*size_edit_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*size_edit_form.background:	black
*size_edit_form.foreground:	yellow
*size_edit_form.width:		250
*size_edit_label.label:		-- Size Edit Menu --
*size_edit_label.width:		200
*size_edit_label.background:	midnightblue
*size_edit_vert.label:		Edit Vertical
*size_edit_vert.width:		200
*size_edit_horz.label:		Edit Horizontal
*size_edit_horz.width:		200
*size_edit_cancel.label:	Cancel
*size_edit_cancel.width:	200

!!!!!!!!!!!!!!!!!!!!!!!
!                     !
!  Zero_Length_Popup  !
!                     !
!!!!!!!!!!!!!!!!!!!!!!!
*zero_length_popup.title:		Size Edit Popup
dui*zero_length_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*zero_length_label.label: Exp bands fall outside range of markers.\nLengths will be adjusted close to nearest marker.
*zero_length_ack.label:	Acknowledged

!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  Vert_Size_Edit_Popup  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

*vert_size_edit_popup.title:	Vert Size Edit Popup
dui*vert_size_edit_popup*font:	-*-helvetica-medium-r-*-*-*-120-*-*-*-*-*-*
*vert_size_edit_form.background:	black
*vert_size_edit_form.foreground:	yellow
*vert_size_edit_form.width:		250
*vert_size_edit_title.label:		Fragment Sizes
*vert_size_edit_title.width:		200
*vert_size_edit_title.background:	midnightblue
*vert_size_edit_cancel.width:		96
*vert_size_edit_cancel.label:		Done
*vert_size_edit_cmd2.width:		96
*vert_size_edit_cmd2.label:		.
*vert_size_edit_box.width:		200
*vert_size_edit_box.height:		512
*vert_size_edit_lane_label.width:	200
*vert_size_edit_lane_label.label:	.
*vert_size_edit_lane_label.foreground:	white
*vert_size_edit_lane_label.background:	darkgreen
*vert_size_edit_lane_inher.width:	200
*vert_size_edit_lane_inher.label:	.
*vert_size_edit_lane_inher.foreground:	white
*vert_size_edit_lane_inher.background:	red
*vert_size_edit_lane_index.width:	200
*vert_size_edit_lane_index.label:	.
*vert_size_edit_lane_index.foreground:	white
*vert_size_edit_lane_index.background:	blue
*vert_size_edit_lane_btn_form*foreground:	yellow
*vert_size_edit_lane_btn_left.width:	32
*vert_size_edit_lane_btn_left.label:	L
*vert_size_edit_lane_btn_down.width:	32
*vert_size_edit_lane_btn_down.label:	<
*vert_size_edit_lane_btn_center.width:	32
*vert_size_edit_lane_btn_center.label:	C
*vert_size_edit_lane_btn_up.width:	32
*vert_size_edit_lane_btn_up.label:	>
*vert_size_edit_lane_btn_right.width:	32
*vert_size_edit_lane_btn_right.label:	R
*vert_size_edit_add_btn.label:		+
*vert_size_edit_sub_btn.label:		-

!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  Horz_Size_Edit_Popup  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

*horz_size_edit_popup.title:	Horz Size Edit Popup
dui*horz_size_edit_popup*font:	-*-helvetica-medium-r-*-*-*-120-*-*-*-*-*-*
*horz_size_edit_form.background:	black
*horz_size_edit_form.foreground:	yellow
*horz_size_edit_title.label:		Fragment Sizes
*horz_size_edit_title.width:		200
*horz_size_edit_title.background:	midnightblue
*horz_size_edit_cancel.label:	Done
*horz_size_edit_cancel.width:	96
*horz_size_edit_cmd2.width:	96
*horz_size_edit_cmd3.width:	20
*horz_size_edit_cmd4.width:	20
*horz_size_edit_cmd2.label:	.
*horz_size_edit_cmd3.label:	+
*horz_size_edit_cmd4.label:	-
*hz_lane_label*foreground:	white
*hz_lane_label*background:	darkgreen
*hz_lane_label*width:		36
*hz_lane_inher*foreground:	white
*hz_lane_inher*background:	red
*hz_lane_inher*width:		36
*hz_lane_index*foreground:	white
*hz_lane_index*background:	blue
*hz_lane_index*width:		36
*horz_syz*width:		36
*horz_syz*foreground:		white
*horz_size_edit_viewport.horizontal.foreground: blue
*horz_size_edit_viewport.horizontal.thickness:  10
*horz_size_edit_inc_dec.width:	35
*horz_size_edit_inc_dec.height:	20
*horz_size_edit_inc_dec.borderColor:	red
*horz_size_edit_inc_dec.defaultDistance: 1
*horz_size_edit_add_btn.label:		+
*horz_size_edit_sub_btn.label:		-
*horz_size_edit_add_btn.foreground:	green
*horz_size_edit_sub_btn.foreground:	green
*horz_size_edit_add_btn.borderColor:	red
*horz_size_edit_sub_btn.borderColor:	red

!!!!!!!!!!!!!!!!!!!!!!!
!                     !
!  Parent Size Popup  !
!                     !
!!!!!!!!!!!!!!!!!!!!!!!

*parent_size_popup.title:	Parent Size Popup
dui*parent_size_popup*font:	-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*parent_size_form.background:	midnightblue
*parent_size_form.foreground:	yellow
*parent_size_form.width:	240
*parent_size_title.label:	Parent Summary
*parent_size_title.width:	238
*parent_size_mother_label.label:	Mother Sizes
*parent_size_father_label.label:	Father Sizes
*parent_size_mother_label.width:	118
*parent_size_father_label.width:	118
*parent_size_accept.label:	Accept
*parent_size_cancel.label:	Cancel
*parent_size_accept.width:	118
*parent_size_cancel.width:	118

!!!!!!!!!!!!!!!!!!!!!!!!!!
!                        !
!  Allele Summary Popup  !
!                        !
!!!!!!!!!!!!!!!!!!!!!!!!!!

*allele_summary_popup.title:	Allele Summary Popup
*allele_summary_popup.font:	-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*allele_summary_form*background:	midnightblue
*allele_summary_form*foreground:	yellow
*allele_summary_title.label:		---  Allele Summary  ---
*allele_summary_title.width:		500
*allele_summary_text.width:		500
*allele_summary_text.height:		200
*allele_summary_text.displayCaret:	False
*allele_summary_text.editType:		XawtextRead
dui*allele_summary_text*font:	-adobe-courier-medium-r-*-*-*-120-*-*-*-*-*-*

!!!!!!!!!!!!!!!!!!!!!
!		    !
!  ImageFlagsPopup  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

*image_flags_popup.title:	Image Flags Popup
dui*image_flags_popup*font:	-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*image_flags_form*background:	midnightblue
*image_flags_form*foreground:	yellow
*image_flags_title.label:	Toggle Image Flags
!*image_flags_title.width:	170
!*image_flags_ssrp_label.borderWidth: 0
!*image_flags_inh_label.borderWidth: 0
*image_flags_ssrp_label.foreground:	red
*image_flags_inh_label.foreground:	red
*image_flags_ssrp_label.label:	<- 1 or 4 markers ?
*image_flags_inh_label.label:	<- Inheritance active ?
*image_flags_ssrp_yesno.label:	1
*image_flags_inh_yesno.label:	No
*image_flags_OK.label:		Load Image
*image_flags_cancel.label:	Load No Image
*image_flags_ssrp_yesno.width:	50
*image_flags_inh_yesno.width:	50
!*image_flags_OK.width:		120
!*image_flags_cancel.width:	120

!!!!!!!!!!!!!!!!!!!!!
!                   !
!  Odd-image Popup  !
!                   !
!!!!!!!!!!!!!!!!!!!!!

*odd_image_popup.title:		Odd Image Popup
dui*odd_image_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*odd_image_form*borderColor:	red
!*odd_image_form*borderColor:	yellow
*odd_image_form.background:	black
*odd_image_form.foreground:	white
*odd_image_title.label:		Non-standard Image Specification
*odd_image_title.background:	midnightblue
*odd_image_title.foreground:	yellow
*odd_image_file_title.label:	--- Image name and file size ---
*odd_image_name.label:		No image selected.
*odd_image_name.foreground:	yellow
*odd_image_size.foreground:	yellow
*odd_image_list_form.background:	black
*odd_image_list_form.foreground:	white
*odd_image_hdrbytes.label:	# header bytes
*odd_image_coltext.label:	# cols:
*odd_image_rowtext.label:	# rows:
*odd_image_byttext.label:	# bytes/pixel:
*odd_image_bittext.label:	# bits/pixel:
*odd_image_ok.label:		OK
*odd_image_ok.background:	gray
*odd_image_ok.foreground:	black
*odd_image_cancel.label:	Cancel
*odd_image_cancel.background:	gray
*odd_image_cancel.foreground:	black
*odd_image_reset.label:		Reset
*odd_image_reset.background:	gray
*odd_image_reset.foreground:	black
*odd_image_help.label:		Help
*odd_image_help.background:	gray
*odd_image_help.foreground:	black

!!!!!!!!!!!!!!!!!!!!!!
!                    !
!  Image-type Popup  !
!                    !
!!!!!!!!!!!!!!!!!!!!!!

*image_type_popup.title:	Image Type Popup
dui*image_type_popup*font:		-*-helvetica-*-r-*-*-*-140-*-*-*-*-*-*
*image_type_form*borderColor:	red
*image_type_form.background:	black
*image_type_form.foreground:	white
*image_type_label.label:	Choose Image Type
*image_type_label.background:	midnightblue
*image_type_label.foreground:	yellow
*image_type_pos_btn.label:	Positive
*image_type_neg_btn.label:	Negative
*image_type_pos_btn.background:	black
*image_type_pos_btn.foreground:	green
*image_type_neg_btn.background:	green
*image_type_neg_btn.foreground:	black


!!!!!!!!!!!!!!!!!
!               !
!  Graph Widget !
!               !
!!!!!!!!!!!!!!!!!

*Graph.borderWidth:	1
*Graph*color1:		red
*Graph*color2:		white
*Graph*color3:		yellow
*Graph*axisColor:       white
*Graph*tytleColor:	white

!!!!!!!!!!!!!!!!!!!!!!!!!!!
!                         !
!  Lane Label Edit Popup  !
!                         !
!!!!!!!!!!!!!!!!!!!!!!!!!!!

*lane_label_edit_popup.title:		Lane Label Edit Popup
*lane_label_edit_ok.label:		OK
*lane_label_edit_reset.label:		Reset
*lane_label_edit_lft.background:	blue
dui*lane_label_edit_lft*font:	-*-helvetica-medium-r-*-*-*-120-*-*-*-*-*-*
*lane_label_edit_text.editType:		XawtextEdit
*lane_label_dialog.label:		Enter:  lane label / inheritance code
*lane_label_dialog_add.label:		Add
*lane_label_dialog_clear.label:		Clear
*lane_label_dialog_cancel.label:	Cancel

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!
!  Template Definition Popup  !
!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

*templ_def_popup.title:		Template Definition Popup
*templ_def_popup.x:		600
*templ_def_popup.y:		0
dui*templ_def_form*font:	-*-helvetica-medium-r-*-*-*-120-*-*-*-*-*-*
*templ_def_title.label:		Create Template Definition File
*templ_def_hedr*width:		200
*templ_def_hedr.label:		Enter header
*templ_def_num.label:		#
*templ_def_mob.label:		Mobility
*templ_def_bp.label:		Base Pairs
*templ_def_num.borderWidth:	0
*templ_def_mob.borderWidth:	0
*templ_def_bp.borderWidth:	0
*templ_def_ok.label:		OK
*templ_def_cancel.label:	Cancel
*templ_def_reset.label:		Reset
*templ_def_ignore.label:	Use existing template-definition file
*templ_def_ignore.background:	darkgreen
*templ_def_path.label:		Enter pathname
*templ_def_file.label:		Enter filename
*templ_def_path*width:		170
*templ_def_file*width:		170

!!!!!!!!!!!!!!!!
!              !
!  Gel-Format  !
!              !
!!!!!!!!!!!!!!!!

*gel_fmt_popup.title:		Gel Format Popup
*gel_fmt_popup.x:		600
*gel_fmt_popup.y:		0
dui*gel_fmt_form*font:	-*-helvetica-medium-r-*-*-*-120-*-*-*-*-*-*
*gel_fmt_viewport.height:	300
*gel_fmt_viewport.width:	170
*gel_fmt_title.label:		Create Gel-Format File
*gel_fmt_title.width:		180
*gel_fmt_hedr*width:		170
*gel_fmt_hedr.label:		Enter header
*gel_fmt_ok.label:		OK
*gel_fmt_cancel.label:		Cancel
*gel_fmt_reset.label:		Reset
*gel_fmt_ignore.label:		Use existing gel-format file
*gel_fmt_ignore.background:	darkgreen
*gel_fmt_path.label:		Enter pathname
*gel_fmt_file.label:		Enter filename
*gel_fmt_path*width:		170
*gel_fmt_file*width:		170
*gel_fmt_guide.label:	Enter:  ID / IC\n/ IC = Inheritance Code (opt)
*gel_fmt_viewport*Dialog*Label*background:	blue

*band_edit_popup.title:		Template Edit Popup

*phony.background:	black