Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1032425806-013487-3242 Query= (577 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,171,253 sequences; 370,891,306 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports Score E Sequences producing significant alignments: (bits) Value gb|AAN04997.1| (AC105744) putative transcription initiation... 292 2e-78 ref|NP_192998.1| (NM_117331) putative protein; protein id: ... 179 2e-44 gb|AAF30307.1|AC018907_7 (AC018907) putative RING zinc fing... 38 0.067 ref|NP_566274.1| (NM_111489) putative RING zinc finger prot... 38 0.067 gb|AAM78102.1| (AY125510) AT5g19080/T16G12_120 [Arabidopsis... 38 0.067 ref|NP_566356.1| (NM_111812) expressed protein; protein id:... 38 0.087 ref|NP_197409.1| (NM_121913) unknown protein; protein id: A... 37 0.11 ref|NP_510817.1| (NM_078416) F10D7.5b.p [Caenorhabditis ele... 37 0.19 gb|AAL86506.1|AC099040_10 (AC099040) putative hydroxyprolin... 37 0.19 gb|AAM81093.1|U40945_8 (U40945) Hypothetical protein F10D7.... 37 0.19 ref|NP_510818.1| (NM_078417) D. melanogaster finger protein... 37 0.19 gb|AAM81090.1|U40945_5 (U40945) Hypothetical protein F10D7.... 37 0.19 pir||T16028 hypothetical protein F10D7.5 - Caenorhabditis e... 37 0.19 ref|NP_195765.1| (NM_120223) putative protein; protein id: ... 36 0.25 gb|AAF48305.1| (AE003493) CG9941-PA [Drosophila melanogaster] 35 0.43 gb|AAM67190.1| (AY088884) putative RING zinc finger protein... 35 0.43 ref|NP_195940.1| (NM_120398) expressed protein; protein id:... 35 0.43 ref|NP_519196.1| (NC_003295) PROBABLE TWO-COMPONENT SYSTEM ... 35 0.74 gb|EAA04818.1| (AAAB01008810) agCP6745 [Anopheles gambiae s... 35 0.74 gb|ZP_00043559.1| (NZ_AAAN01000154) hypothetical protein [M... 35 0.74 ref|NP_199282.1| (NM_123836) putative protein; protein id: ... 35 0.74 ref|NP_190909.1| (NM_115201) putative protein; protein id: ... 34 0.96 dbj|BAA25470.1| (AB011116) KIAA0544 protein [Homo sapiens] 34 1.3 ref|NP_510385.1| (NM_077984) Zinc finger, C3HC4 type (RING ... 34 1.3 ref|NP_649187.1| (NM_140930) CG7298 gene product [Drosophil... 33 1.6 gb|AAF49059.2| (AE003514) CG7298-PA [Drosophila melanogaster] 33 1.6 ref|XP_148077.1| (XM_148077) RIKEN cDNA 2610042J20 [Mus mus... 33 1.6 gb|ZP_00046129.1| (NZ_AAAB01000003) hypothetical protein [L... 33 1.6 dbj|BAB27816.1| (AK011747) Zinc finger, C3HC4 type (RING fi... 33 1.6 ref|NP_566724.1| (NM_113229) auxin-regulated protein; prote... 33 2.1 gb|AAM65682.1| (AY088137) unknown [Arabidopsis thaliana] 33 2.1 dbj|BAA95741.1| (AB025608) contains similarity to ankyrin l... 33 2.1 ref|NP_199323.1| (NM_123878) putative protein; protein id: ... 33 2.1 ref|NP_683586.1| (NM_148744) auxin-regulated protein; prote... 33 2.1 ref|NP_567428.1| (NM_117514) Expressed protein; protein id:... 33 2.8 emb|CAC59873.1| (AL160371) probable heat shock protein hslu... 33 2.8 dbj|BAB61152.1| (AP003199) contains ESTs AU068079(C11823),A... 33 2.8 ref|NP_181354.1| (NM_129376) unknown protein; protein id: A... 32 3.7 dbj|BAC10202.1| (AP004395) contains ESTs AU055804(S20063),A... 32 4.8 ref|NP_610973.1| (NM_137129) CG12863 gene product [Drosophi... 32 4.8 gb|AAF58228.2| (AE003814) CG12863-PA [Drosophila melanogaster] 32 4.8 gb|AAK84420.1|AF400063_1 (AF400063) neuralized 1 [Mus muscu... 32 6.2 ref|NP_067335.1| (NM_021360) neuralized homolog (Drosophila... 32 6.2 ref|NP_181076.1| (NM_129085) unknown protein; protein id: A... 32 6.2 ref|NP_487802.1| (NC_003272) oligopeptide binding protein o... 32 6.2 ref|NP_203261.1| (NC_003083) IAP-4 [Epiphyas postvittana nu... 32 6.2 gb|AAM97032.1| (AY136366) unknown protein [Arabidopsis thal... 32 6.2 ref|XP_123433.1| (XM_123433) similar to neuralized homolog ... 32 6.2 gb|AAK97495.1|AF401228_1 (AF401228) neuralized [Mus musculus] 32 6.2 ref|XP_085974.1| (XM_085974) similar to zinc finger protein... 32 6.2 pir||S68824 rngB protein, cytosolic - slime mold (Dictyoste... 32 6.2 emb|CAB64571.1| (AL135898) hypothetical protein L673.04 [Le... 32 6.2 ref|NP_127506.1| (NC_002532) replicase ORF1ab polyprotein [... 31 8.2 ref|NP_174371.1| (NM_102823) hypothetical protein; protein ... 31 8.2 sp|P19811|RPOA_EAV POL polyprotein (ORF1A/1B) [Contains: RN... 31 8.2 ref|XP_094260.3| (XM_094260) similar to neuralized [Homo sa... 31 8.2 gb|AAM67026.1| (AY088707) unknown [Arabidopsis thaliana] 31 8.2 gb|AAL69890.1|AF419159_1 (AF419159) neuralized [Xenopus lae... 31 8.2 ref|NP_566438.1| (NM_112128) expressed protein; protein id:... 31 8.2 ref|XP_116162.1| (XM_116162) similar to evidence:NAS~hypoth... 31 8.2 gb|AAC32390.3| (AF082873) histidine kinase [Herbaspirillum ... 31 8.2 Alignments
RID: 1032425806-013487-3242
Query= (577 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,171,253 sequences; 370,891,306 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gb|AAN04997.1| (AC105744) putative transcription initiation... 292 2e-78 ref|NP_192998.1| (NM_117331) putative protein; protein id: ... 179 2e-44 gb|AAF30307.1|AC018907_7 (AC018907) putative RING zinc fing... 38 0.067 ref|NP_566274.1| (NM_111489) putative RING zinc finger prot... 38 0.067 gb|AAM78102.1| (AY125510) AT5g19080/T16G12_120 [Arabidopsis... 38 0.067 ref|NP_566356.1| (NM_111812) expressed protein; protein id:... 38 0.087 ref|NP_197409.1| (NM_121913) unknown protein; protein id: A... 37 0.11 ref|NP_510817.1| (NM_078416) F10D7.5b.p [Caenorhabditis ele... 37 0.19 gb|AAL86506.1|AC099040_10 (AC099040) putative hydroxyprolin... 37 0.19 gb|AAM81093.1|U40945_8 (U40945) Hypothetical protein F10D7.... 37 0.19 ref|NP_510818.1| (NM_078417) D. melanogaster finger protein... 37 0.19 gb|AAM81090.1|U40945_5 (U40945) Hypothetical protein F10D7.... 37 0.19 pir||T16028 hypothetical protein F10D7.5 - Caenorhabditis e... 37 0.19 ref|NP_195765.1| (NM_120223) putative protein; protein id: ... 36 0.25 gb|AAF48305.1| (AE003493) CG9941-PA [Drosophila melanogaster] 35 0.43 gb|AAM67190.1| (AY088884) putative RING zinc finger protein... 35 0.43 ref|NP_195940.1| (NM_120398) expressed protein; protein id:... 35 0.43 ref|NP_519196.1| (NC_003295) PROBABLE TWO-COMPONENT SYSTEM ... 35 0.74 gb|EAA04818.1| (AAAB01008810) agCP6745 [Anopheles gambiae s... 35 0.74 gb|ZP_00043559.1| (NZ_AAAN01000154) hypothetical protein [M... 35 0.74 ref|NP_199282.1| (NM_123836) putative protein; protein id: ... 35 0.74 ref|NP_190909.1| (NM_115201) putative protein; protein id: ... 34 0.96 dbj|BAA25470.1| (AB011116) KIAA0544 protein [Homo sapiens] 34 1.3 ref|NP_510385.1| (NM_077984) Zinc finger, C3HC4 type (RING ... 34 1.3 ref|NP_649187.1| (NM_140930) CG7298 gene product [Drosophil... 33 1.6 gb|AAF49059.2| (AE003514) CG7298-PA [Drosophila melanogaster] 33 1.6 ref|XP_148077.1| (XM_148077) RIKEN cDNA 2610042J20 [Mus mus... 33 1.6 gb|ZP_00046129.1| (NZ_AAAB01000003) hypothetical protein [L... 33 1.6 dbj|BAB27816.1| (AK011747) Zinc finger, C3HC4 type (RING fi... 33 1.6 ref|NP_566724.1| (NM_113229) auxin-regulated protein; prote... 33 2.1 gb|AAM65682.1| (AY088137) unknown [Arabidopsis thaliana] 33 2.1 dbj|BAA95741.1| (AB025608) contains similarity to ankyrin l... 33 2.1 ref|NP_199323.1| (NM_123878) putative protein; protein id: ... 33 2.1 ref|NP_683586.1| (NM_148744) auxin-regulated protein; prote... 33 2.1 ref|NP_567428.1| (NM_117514) Expressed protein; protein id:... 33 2.8 emb|CAC59873.1| (AL160371) probable heat shock protein hslu... 33 2.8 dbj|BAB61152.1| (AP003199) contains ESTs AU068079(C11823),A... 33 2.8 ref|NP_181354.1| (NM_129376) unknown protein; protein id: A... 32 3.7 dbj|BAC10202.1| (AP004395) contains ESTs AU055804(S20063),A... 32 4.8 ref|NP_610973.1| (NM_137129) CG12863 gene product [Drosophi... 32 4.8 gb|AAF58228.2| (AE003814) CG12863-PA [Drosophila melanogaster] 32 4.8 gb|AAK84420.1|AF400063_1 (AF400063) neuralized 1 [Mus muscu... 32 6.2 ref|NP_067335.1| (NM_021360) neuralized homolog (Drosophila... 32 6.2 ref|NP_181076.1| (NM_129085) unknown protein; protein id: A... 32 6.2 ref|NP_487802.1| (NC_003272) oligopeptide binding protein o... 32 6.2 ref|NP_203261.1| (NC_003083) IAP-4 [Epiphyas postvittana nu... 32 6.2 gb|AAM97032.1| (AY136366) unknown protein [Arabidopsis thal... 32 6.2 ref|XP_123433.1| (XM_123433) similar to neuralized homolog ... 32 6.2 gb|AAK97495.1|AF401228_1 (AF401228) neuralized [Mus musculus] 32 6.2 ref|XP_085974.1| (XM_085974) similar to zinc finger protein... 32 6.2 pir||S68824 rngB protein, cytosolic - slime mold (Dictyoste... 32 6.2 emb|CAB64571.1| (AL135898) hypothetical protein L673.04 [Le... 32 6.2 ref|NP_127506.1| (NC_002532) replicase ORF1ab polyprotein [... 31 8.2 ref|NP_174371.1| (NM_102823) hypothetical protein; protein ... 31 8.2 sp|P19811|RPOA_EAV POL polyprotein (ORF1A/1B) [Contains: RN... 31 8.2 ref|XP_094260.3| (XM_094260) similar to neuralized [Homo sa... 31 8.2 gb|AAM67026.1| (AY088707) unknown [Arabidopsis thaliana] 31 8.2 gb|AAL69890.1|AF419159_1 (AF419159) neuralized [Xenopus lae... 31 8.2 ref|NP_566438.1| (NM_112128) expressed protein; protein id:... 31 8.2 ref|XP_116162.1| (XM_116162) similar to evidence:NAS~hypoth... 31 8.2 gb|AAC32390.3| (AF082873) histidine kinase [Herbaspirillum ... 31 8.2
>gb|AAN04997.1| (AC105744) putative transcription initiation factor [Oryza sativa (japonica cultivar-group)] Length = 532 Score = 292 bits (747), Expect = 2e-78 Identities = 140/141 (99%), Positives = 140/141 (99%) Frame = +3 Query: 153 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALS ARCLVCSAPITNLIREY Sbjct: 1 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60 Query: 333 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 512 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI Sbjct: 61 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120 Query: 513 LEDETGQYQYQGQMEGSQSST 575 LEDETGQYQYQGQMEGSQSST Sbjct: 121 LEDETGQYQYQGQMEGSQSST 141
>ref|NP_192998.1| (NM_117331) putative protein; protein id: At4g12610.1 [Arabidopsis thaliana] emb|CAB53754.1| (AL049730) putative protein [Arabidopsis thaliana] emb|CAB78304.1| (AL161534) putative protein [Arabidopsis thaliana] Length = 649 Score = 179 bits (454), Expect = 2e-44 Identities = 85/136 (62%), Positives = 102/136 (74%) Frame = +3 Query: 168 LVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRAN 347 L L +C GCGS SDLYG+SC+H TLC CG++MA + ++C C +T LIREYNVRA Sbjct: 5 LQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYNVRAA 64 Query: 348 ATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDET 527 A TDK++ IGRFVTGLP F KK +ENKWSL K+ QGRQ + REK KPWILEDET Sbjct: 65 APTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDET 122 Query: 528 GQYQYQGQMEGSQSST 575 GQ+QYQG +EGSQS+T Sbjct: 123 GQFQYQGHLEGSQSAT 138
>gb|AAF30307.1|AC018907_7 (AC018907) putative RING zinc finger protein [Arabidopsis thaliana] Length = 546 Score = 38.1 bits (87), Expect = 0.067 Identities = 13/32 (40%), Positives = 19/32 (58%) Frame = +3 Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323 C+H +CS C K + L S +C +C PI L+ Sbjct: 504 CRHLCMCSDCAKELRLQSNKCPICRQPIEELL 535
>ref|NP_566274.1| (NM_111489) putative RING zinc finger protein; protein id: At3g06140.1, supported by cDNA: 40787. [Arabidopsis thaliana] gb|AAM65605.1| (AY088059) putative RING zinc finger protein [Arabidopsis thaliana] Length = 359 Score = 38.1 bits (87), Expect = 0.067 Identities = 13/32 (40%), Positives = 19/32 (58%) Frame = +3 Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323 C+H +CS C K + L S +C +C PI L+ Sbjct: 317 CRHLCMCSDCAKELRLQSNKCPICRQPIEELL 348
>gb|AAM78102.1| (AY125510) AT5g19080/T16G12_120 [Arabidopsis thaliana] Length = 378 Score = 38.1 bits (87), Expect = 0.067 Identities = 13/41 (31%), Positives = 22/41 (52%) Frame = +3 Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326 P D C+H +LCS C + + + +C +C PI L++ Sbjct: 328 PKDTAVMPCRHLSLCSDCAEELRFQTNKCPICRQPIHELVK 368
>ref|NP_566356.1| (NM_111812) expressed protein; protein id: At3g09770.1, supported by cDNA: 38757., supported by cDNA: gi_18377643 [Arabidopsis thaliana] gb|AAF23258.1|AC015985_16 (AC015985) putative RING zinc finger protein [Arabidopsis thaliana] gb|AAF23312.1|AC016661_37 (AC016661) unknown protein [Arabidopsis thaliana] gb|AAL66972.1| (AY074275) putative RING zinc finger protein [Arabidopsis thaliana] gb|AAM65384.1| (AY087831) putative RING zinc finger protein [Arabidopsis thaliana] Length = 388 Score = 37.7 bits (86), Expect = 0.087 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRAN 347 P D C+H +CS C K + + RC +C P+ L+ E V N Sbjct: 326 PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL-EIKVHGN 372
>ref|NP_197409.1| (NM_121913) unknown protein; protein id: At5g19080.1 [Arabidopsis thaliana] Length = 378 Score = 37.4 bits (85), Expect = 0.11 Identities = 13/41 (31%), Positives = 21/41 (50%) Frame = +3 Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326 P D C+H LCS C + + + +C +C PI L++ Sbjct: 328 PKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVK 368
>ref|NP_510817.1| (NM_078416) F10D7.5b.p [Caenorhabditis elegans] Length = 750 Score = 36.6 bits (83), Expect = 0.19 Identities = 11/36 (30%), Positives = 21/36 (57%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 +C H +C CG+ + + C +C AP+ ++I+ Y Sbjct: 713 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 748
>gb|AAL86506.1|AC099040_10 (AC099040) putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] gb|AAM18751.1|AC099325_7 (AC099325) unknown protein [Oryza sativa (japonica cultivar-group)] Length = 425 Score = 36.6 bits (83), Expect = 0.19 Identities = 13/40 (32%), Positives = 20/40 (49%) Frame = +3 Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323 P D C+H +CS C K + + RC +C P+ L+ Sbjct: 350 PRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLL 389
>gb|AAM81093.1|U40945_8 (U40945) Hypothetical protein F10D7.5d [Caenorhabditis elegans] Length = 465 Score = 36.6 bits (83), Expect = 0.19 Identities = 11/36 (30%), Positives = 21/36 (57%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 +C H +C CG+ + + C +C AP+ ++I+ Y Sbjct: 428 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 463
>ref|NP_510818.1| (NM_078417) D. melanogaster finger protein neuralized [Caenorhabditis elegans] Length = 795 Score = 36.6 bits (83), Expect = 0.19 Identities = 11/36 (30%), Positives = 21/36 (57%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 +C H +C CG+ + + C +C AP+ ++I+ Y Sbjct: 758 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 793
>gb|AAM81090.1|U40945_5 (U40945) Hypothetical protein F10D7.5a [Caenorhabditis elegans] Length = 634 Score = 36.6 bits (83), Expect = 0.19 Identities = 11/36 (30%), Positives = 21/36 (57%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 +C H +C CG+ + + C +C AP+ ++I+ Y Sbjct: 597 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 632
>pir||T16028 hypothetical protein F10D7.5 - Caenorhabditis elegans Length = 824 Score = 36.6 bits (83), Expect = 0.19 Identities = 11/36 (30%), Positives = 21/36 (57%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 +C H +C CG+ + + C +C AP+ ++I+ Y Sbjct: 787 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 822
>ref|NP_195765.1| (NM_120223) putative protein; protein id: At5g01450.1 [Arabidopsis thaliana] pir||T48167 hypothetical protein T10O8.160 - Arabidopsis thaliana emb|CAB81928.1| (AL161746) putative protein [Arabidopsis thaliana] Length = 428 Score = 36.2 bits (82), Expect = 0.25 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +3 Query: 150 AMGSADLVLKAACEGC-GSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326 A G + C C +P D + SC H C CG +A +S C VC I + + Sbjct: 365 AHGEGHSSTRYLCAICYDAPRDCFFLSCGHCVACFQCGTRIAETSGFCPVCRKKIRKVKK 424 Query: 327 EYNV 338 +NV Sbjct: 425 IFNV 428
>gb|AAF48305.1| (AE003493) CG9941-PA [Drosophila melanogaster] Length = 789 Score = 35.4 bits (80), Expect = 0.43 Identities = 14/43 (32%), Positives = 23/43 (52%) Frame = +3 Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATT 356 C+H LC+SC S+ + C +C AP L++ V+ +T Sbjct: 334 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAVQKGIST 376
>gb|AAM67190.1| (AY088884) putative RING zinc finger protein [Arabidopsis thaliana] Length = 337 Score = 35.4 bits (80), Expect = 0.43 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +3 Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323 C C S P D C+H +CS C K++ + C VC P+ L+ Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLL 331
>ref|NP_195940.1| (NM_120398) expressed protein; protein id: At5g03200.1, supported by cDNA: 98672. [Arabidopsis thaliana] pir||T48341 hypothetical protein F15A17.230 - Arabidopsis thaliana emb|CAB86087.1| (AL163002) putative protein [Arabidopsis thaliana] dbj|BAB08380.1| (AB005240) RING zinc finger protein-like [Arabidopsis thaliana] Length = 337 Score = 35.4 bits (80), Expect = 0.43 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +3 Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323 C C S P D C+H +CS C K++ + C VC P+ L+ Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLL 331
>ref|NP_519196.1| (NC_003295) PROBABLE TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] emb|CAD14777.1| (AL646062) PROBABLE TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] Length = 784 Score = 34.7 bits (78), Expect = 0.74 Identities = 21/43 (48%), Positives = 25/43 (57%) Frame = +2 Query: 167 PGAEGGVRGLRLAVGPLRHVMQAHHALQLLRQIHGALQRPLPR 295 P + VRGL LA GP H++ H ALQL RQ AL +PR Sbjct: 173 PDPDSVVRGLYLAEGPRGHLLD-HLALQLARQAGPALAGDVPR 214
>gb|EAA04818.1| (AAAB01008810) agCP6745 [Anopheles gambiae str. PEST] Length = 307 Score = 34.7 bits (78), Expect = 0.74 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326 C+H LC+SC S+ + C +C AP L++ Sbjct: 246 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQ 278
>gb|ZP_00043559.1| (NZ_AAAN01000154) hypothetical protein [Magnetococcus sp. MC-1] Length = 487 Score = 34.7 bits (78), Expect = 0.74 Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 1/62 (1%) Frame = +3 Query: 150 AMGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVC-SAPITNLIR 326 AM D ++ C CG+ D YG SC+ +CS+ + L A+C VC S P+ Sbjct: 130 AMFLPDRFIRGTCPHCGAV-DQYGDSCE---VCSATYRPTELKEAKCAVCGSQPVEKSSE 185 Query: 327 EY 332 Y Sbjct: 186 HY 187
>ref|NP_199282.1| (NM_123836) putative protein; protein id: At5g44690.1 [Arabidopsis thaliana] dbj|BAB08822.1| (AB016874) gene_id:K23L20.2~pir||T00474~similar to unknown protein [Arabidopsis thaliana] Length = 684 Score = 34.7 bits (78), Expect = 0.74 Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 1/54 (1%) Frame = +3 Query: 174 LKAACEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332 L+ C C P D C H C C + S+ +C +C API +++R + Sbjct: 628 LERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPIVDVVRAF 681
>ref|NP_190909.1| (NM_115201) putative protein; protein id: At3g53410.1, supported by cDNA: 110247. [Arabidopsis thaliana] pir||T45881 hypothetical protein F4P12.110 - Arabidopsis thaliana emb|CAB67648.1| (AL132966) putative protein [Arabidopsis thaliana] gb|AAM61084.1| (AY084516) putative RING zinc finger protein [Arabidopsis thaliana] Length = 299 Score = 34.3 bits (77), Expect = 0.96 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +3 Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323 P D C+H +CS C K + + C +C P+ L+ Sbjct: 250 PRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVDRLL 289
>dbj|BAA25470.1| (AB011116) KIAA0544 protein [Homo sapiens] Length = 583 Score = 33.9 bits (76), Expect = 1.3 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +3 Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371 SDL T C+H LC+SC ++ + C +C P L IR + A + SFS Sbjct: 314 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFS 373
>ref|NP_510385.1| (NM_077984) Zinc finger, C3HC4 type (RING finger) [Caenorhabditis elegans] pir||T19204 hypothetical protein C11H1.3 - Caenorhabditis elegans emb|CAA94116.1| (Z70205) predicted using Genefinder~contains similarity to Pfam domain: PF00097 (Zinc finger, C3HC4 type (RING finger)), Score=29.8, E-value=2.2e-08, N=1~cDNA EST yk67c6.5 comes from this gene~cDNA EST yk597f9.5 comes from this gene~cDNA EST yk653f11.5> Length = 529 Score = 33.9 bits (76), Expect = 1.3 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +3 Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326 C+H +CS+C S+ C +C +P LIR Sbjct: 284 CRHLCVCSNCADSLRYKHNNCPICRSPFRALIR 316
>ref|NP_649187.1| (NM_140930) CG7298 gene product [Drosophila melanogaster] gb|AAL28884.1| (AY061336) LD26327p [Drosophila melanogaster] Length = 369 Score = 33.5 bits (75), Expect = 1.6 Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 144 SPAMGSADLVLKAACEGCGSPSDLYGT--SCKHTTLCSSCGKSMALSSARCLVCSAPITN 317 S G+ + VL++ C+ P +G SC C S + L S +C N Sbjct: 144 SNTQGTNETVLESLCDVV-PPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSA------N 196 Query: 318 LIREYNVRANATTDKSFSIGRFVTGLP 398 YNV AN T +S S+ VT +P Sbjct: 197 NQTAYNVLANQCTYESASVCSRVTNIP 223
>gb|AAF49059.2| (AE003514) CG7298-PA [Drosophila melanogaster] Length = 356 Score = 33.5 bits (75), Expect = 1.6 Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 144 SPAMGSADLVLKAACEGCGSPSDLYGT--SCKHTTLCSSCGKSMALSSARCLVCSAPITN 317 S G+ + VL++ C+ P +G SC C S + L S +C N Sbjct: 131 SNTQGTNETVLESLCDVV-PPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSA------N 183 Query: 318 LIREYNVRANATTDKSFSIGRFVTGLP 398 YNV AN T +S S+ VT +P Sbjct: 184 NQTAYNVLANQCTYESASVCSRVTNIP 210
>ref|XP_148077.1| (XM_148077) RIKEN cDNA 2610042J20 [Mus musculus] Length = 578 Score = 33.5 bits (75), Expect = 1.6 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +3 Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371 SDL T C+H LC+SC ++ + C +C P L IR + A + SFS Sbjct: 283 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFS 342
>gb|ZP_00046129.1| (NZ_AAAB01000003) hypothetical protein [Lactobacillus gasseri] Length = 281 Score = 33.5 bits (75), Expect = 1.6 Identities = 24/95 (25%), Positives = 40/95 (41%) Frame = +3 Query: 246 CSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKSFSIGRFVTGLPPFSKKKSAE 425 C +CGK + L A+C C N N+ A D +G + +P KK E Sbjct: 5 CPNCGKEVNLGEAKCPFCGYDFVN-----NINAKIPADLGM-MGIRLNNVPKKKKKAEPE 58 Query: 426 NKWSLHKEGLQGRQIPENMREKYNRKPWILEDETG 530 NK + K Q + + K+ +K +++ + G Sbjct: 59 NK-RVEKNTTQKVAVTKAKELKHAKKNKVVKKKKG 92
>dbj|BAB27816.1| (AK011747) Zinc finger, C3HC4 type (RING finger) containing protein~data source:Pfam, source key:PF00097, evidence:ISS~putative [Mus musculus] Length = 494 Score = 33.5 bits (75), Expect = 1.6 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +3 Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371 SDL T C+H LC+SC ++ + C +C P L IR + A + SFS Sbjct: 245 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFS 304
>ref|NP_566724.1| (NM_113229) auxin-regulated protein; protein id: At3g23280.1, supported by cDNA: 41648. [Arabidopsis thaliana] Length = 462 Score = 33.1 bits (74), Expect = 2.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 +PS+ C H C SC K + + C VC A I +I+ Y V Sbjct: 417 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
>gb|AAM65682.1| (AY088137) unknown [Arabidopsis thaliana] Length = 462 Score = 33.1 bits (74), Expect = 2.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 +PS+ C H C SC K + + C VC A I +I+ Y V Sbjct: 417 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
>dbj|BAA95741.1| (AB025608) contains similarity to ankyrin like protein~gene_id:K14B15.19 [Arabidopsis thaliana] Length = 454 Score = 33.1 bits (74), Expect = 2.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 +PS+ C H C SC K + + C VC A I +I+ Y V Sbjct: 409 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 454
>ref|NP_199323.1| (NM_123878) putative protein; protein id: At5g45100.1, supported by cDNA: gi_16604441 [Arabidopsis thaliana] dbj|BAB09495.1| (AB019224) gene_id:K17O22.9~pir||T04751~strong similarity to unknown protein [Arabidopsis thaliana] gb|AAL24227.1| (AY058839) AT5g45100/K17O22_9 [Arabidopsis thaliana] Length = 294 Score = 33.1 bits (74), Expect = 2.1 Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 1/54 (1%) Frame = +3 Query: 156 GSADLVLKAACEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPIT 314 G V+ C+ CG + + C+H LC+ CG S L + C VC +T Sbjct: 234 GDVTAVVNGGCKRCGELTASVLVLPCRHLCLCTVCGSSALLRT--CPVCDMVMT 285
>ref|NP_683586.1| (NM_148744) auxin-regulated protein; protein id: At3g23280.2, supported by cDNA: gi_15010671, supported by cDNA: gi_16974316 [Arabidopsis thaliana] gb|AAK73995.1| (AY045637) AT3g23280/K14B15_17 [Arabidopsis thaliana] gb|AAL31143.1| (AY059650) AT3g23280/K14B15_17 [Arabidopsis thaliana] Length = 438 Score = 33.1 bits (74), Expect = 2.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 +PS+ C H C SC K + + C VC A I +I+ Y V Sbjct: 393 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 438
>ref|NP_567428.1| (NM_117514) Expressed protein; protein id: At4g14365.1, supported by cDNA: 37809., supported by cDNA: gi_13358233, supported by cDNA: gi_17065423, supported by cDNA: gi_20148546 [Arabidopsis thaliana] gb|AAG40396.1|AF325044_1 (AF325044) AT4g14360 [Arabidopsis thaliana] gb|AAL32866.1| (AY062788) ankyrin homolog [Arabidopsis thaliana] gb|AAM10164.1| (AY081602) ankyrin homolog [Arabidopsis thaliana] Length = 376 Score = 32.7 bits (73), Expect = 2.8 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 +PS+ C H C SC K + C VC A I +I+ Y+V Sbjct: 331 APSEAVCVPCGHVAGCISCLKEIENKKMGCPVCRANIDQVIKLYHV 376
>emb|CAC59873.1| (AL160371) probable heat shock protein hslu [Leishmania major] Length = 288 Score = 32.7 bits (73), Expect = 2.8 Identities = 29/120 (24%), Positives = 48/120 (39%), Gaps = 2/120 (1%) Frame = +3 Query: 177 KAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATT 356 +A C S G + HT L S A ++A +AP+TN + +R Sbjct: 3 RALSLSCRSSVAATGAASSHTLLTGVRCCSTAAAAAAAPAPAAPLTNPGSKTLIRDMRPR 62 Query: 357 DKSFSIGRFVTGLPPFSKKKSA--ENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETG 530 + + R++ G K S N+W H Q+P ++RE+ K ++ TG Sbjct: 63 ELMKELDRYIVGQSEAKKAVSVALRNRWRRH-------QVPSDIREEIAPKNILMIGPTG 115
>dbj|BAB61152.1| (AP003199) contains ESTs AU068079(C11823),AU068080(C11823)~similar to Arabidopsis thaliana chromosome 3, F4P12.110~unknown protein [Oryza sativa (japonica cultivar-group)] Length = 313 Score = 32.7 bits (73), Expect = 2.8 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 1/52 (1%) Frame = +3 Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 C C S P D C+H LC C + + + +C +C P+ L RE V Sbjct: 246 CVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGL-REIEV 296
>ref|NP_181354.1| (NM_129376) unknown protein; protein id: At2g38190.1 [Arabidopsis thaliana] pir||T01251 hypothetical protein F16M14.12 - Arabidopsis thaliana gb|AAC27168.1| (AC003028) unknown protein [Arabidopsis thaliana] Length = 124 Score = 32.3 bits (72), Expect = 3.7 Identities = 13/45 (28%), Positives = 20/45 (43%) Frame = +3 Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338 P D + C H+ C CG +M + C +C + + R Y V Sbjct: 80 PRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIYTV 124
>dbj|BAC10202.1| (AP004395) contains ESTs AU055804(S20063),AU055998(S20213), AU055803(S20063)~similar to ankyrin homolog [Oryza sativa (japonica cultivar-group)] Length = 489 Score = 32.0 bits (71), Expect = 4.8 Identities = 20/61 (32%), Positives = 25/61 (40%) Frame = +3 Query: 156 GSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYN 335 G+ + L A EG P C H C SC K + C +C A I +IR Y Sbjct: 436 GTCVICLDAPVEGACIP-------CGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYA 488 Query: 336 V 338 V Sbjct: 489 V 489
>ref|NP_610973.1| (NM_137129) CG12863 gene product [Drosophila melanogaster] gb|AAL48827.1| (AY071205) RE24565p [Drosophila melanogaster] Length = 184 Score = 32.0 bits (71), Expect = 4.8 Identities = 27/116 (23%), Positives = 43/116 (36%) Frame = +3 Query: 186 CEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKS 365 C CG + G + KH C +C K + + C C+ + Y + + Sbjct: 69 CNRCGKCPSVNGQTYKHCESCDACVKPNYVHCSDCRRCTQKEGHNCSFYQTKQHCW--MC 126 Query: 366 FSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQ 533 G T P F K+K+ K L R+ + R KY R+ + + T Q Sbjct: 127 GQKGHIETKCPNFRKRKTNYTKGCLLCGKRNHREKRCSYRSKYFREQCFMNETTIQ 182
>gb|AAF58228.2| (AE003814) CG12863-PA [Drosophila melanogaster] Length = 425 Score = 32.0 bits (71), Expect = 4.8 Identities = 27/116 (23%), Positives = 43/116 (36%) Frame = +3 Query: 186 CEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKS 365 C CG + G + KH C +C K + + C C+ + Y + + Sbjct: 310 CNRCGKCPSVNGQTYKHCESCDACVKPNYVHCSDCRRCTQKEGHNCSFYQTKQHCW--MC 367 Query: 366 FSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQ 533 G T P F K+K+ K L R+ + R KY R+ + + T Q Sbjct: 368 GQKGHIETKCPNFRKRKTNYTKGCLLCGKRNHREKRCSYRSKYFREQCFMNETTIQ 423
>gb|AAK84420.1|AF400063_1 (AF400063) neuralized 1 [Mus musculus] Length = 574 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332 +C H LC SCG + + A C +C PI ++I+ Y Sbjct: 535 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571
>ref|NP_067335.1| (NM_021360) neuralized homolog (Drosophila) [Mus musculus] emb|CAB65238.1| (Y15160) neuralized-like protein [Mus musculus] Length = 574 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332 +C H LC SCG + + A C +C PI ++I+ Y Sbjct: 535 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571
>ref|NP_181076.1| (NM_129085) unknown protein; protein id: At2g35330.1 [Arabidopsis thaliana] gb|AAC36187.1| (AC005314) unknown protein [Arabidopsis thaliana] Length = 711 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 1/36 (2%) Frame = +3 Query: 228 CKHTTLCSSCGKS-MALSSARCLVCSAPITNLIREY 332 C H +C+SC S M A C C AP+ IR + Sbjct: 672 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 707
>ref|NP_487802.1| (NC_003272) oligopeptide binding protein of ABC transporter [Nostoc sp. PCC 7120] dbj|BAB75461.1| (AP003594) oligopeptide binding protein of ABC transporter [Nostoc sp. PCC 7120] Length = 588 Score = 31.6 bits (70), Expect = 6.2 Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%) Frame = +3 Query: 333 NVRANATTDKSFSIGRFVTGLPPFSKK---KSAENKWSLHKEGLQGRQIPENMREKYN 497 N ATT ++ + + V + ++ K +S WSL GL G IP ++ EK+N Sbjct: 143 NPAVGATTSANYEVVKSVEAIDDYTVKVNFQSPNPAWSLPFVGLNGMIIPRHIFEKFN 200
>ref|NP_203261.1| (NC_003083) IAP-4 [Epiphyas postvittana nucleopolyhedrovirus] gb|AAD19699.1| (AF119228) apoptosis inhibitor iap-4 [Epiphyas postvittana nucleopolyhedrovirus] gb|AAK85656.1| (AY043265) IAP-4 [Epiphyas postvittana nucleopolyhedrovirus] Length = 141 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/36 (38%), Positives = 21/36 (57%) Frame = +3 Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYN 335 C H TLC+ C S+ + CL+C P+T + +YN Sbjct: 106 CGHYTLCTVC--SVQMCGKPCLLCQMPVTEYV-DYN 138
>gb|AAM97032.1| (AY136366) unknown protein [Arabidopsis thaliana] Length = 738 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 1/36 (2%) Frame = +3 Query: 228 CKHTTLCSSCGKS-MALSSARCLVCSAPITNLIREY 332 C H +C+SC S M A C C AP+ IR + Sbjct: 699 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 734
>ref|XP_123433.1| (XM_123433) similar to neuralized homolog (Drosophila) [Mus musculus] Length = 499 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332 +C H LC SCG + + A C +C PI ++I+ Y Sbjct: 460 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 496
>gb|AAK97495.1|AF401228_1 (AF401228) neuralized [Mus musculus] Length = 557 Score = 31.6 bits (70), Expect = 6.2 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%) Frame = +3 Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332 +C H LC SCG + + A C +C PI ++I+ Y Sbjct: 518 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 554
>ref|XP_085974.1| (XM_085974) similar to zinc finger protein [Homo sapiens] Length = 241 Score = 31.6 bits (70), Expect = 6.2 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 11/50 (22%) Frame = +3 Query: 186 CEGCGSPSDLYGTSCKHTTL--------CSSCGKSMALSS---ARCLVCS 302 C CG + T C+H + CS CGKS + SS C +C+ Sbjct: 187 CHACGKAFNTSSTLCQHNRIHTGEKPFQCSQCGKSFSCSSHLTRHCRMCN 236
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Sep 19, 2002 1:01 AM Number of letters in database: 370,891,306 Number of sequences in database: 1,171,253 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,546,019 Number of Sequences: 1171253 Number of extensions: 6751909 Number of successful extensions: 24973 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 23403 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 24941 length of database: 370,891,306 effective HSP length: 115 effective length of database: 236,197,211 effective search space used: 17950988036 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)