Processed file: nad3.pir
Number of sequences: 17
Alignment assumed to be: Protein
New number of positions: 61 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
nad3_parde ------MEYLLQEYLPILVFLGMASALAIVLILAAAVIAVRN--PDPEKVSAYECGFNAF
nad3_acaca ---------MTLEYIYIFIFFWGAFFISCLLIFLSYFLVYQE--SDIEKNSAYECGFQPF
nad3_allma --------------MTYLVYIVFTIVLTVGLILVSYLLSQAQ--PDSEKVSAYECGFSPL
nad3_apec -----------IFNFLTLFVSILIFLITTLITFAAHFLPSRN-TD-SEKSSPYECGFDPL
nad3_arath ---------MMSEFAPISIYLVISLLVSLILLGVPFPFASNS-STYPEKLSAYECGFDPS
nad3_balca -------------MNSFLIYLLIAITLSFILSIVGHRLPTRN-MD-QEKLSPYECGFDPQ
nad3_chocr ------MKLIFTEYSAILIFFAISSLLSSVIFLLSYFLIPQK--PDQEKVSAYECGFNPF
nad3_drome -------------MFSIIFIALLILLITTIVMFLASILSKKA-LIDREKSSPFECGFDPK
nad3_human -------------MN-FALILMINTLLALLLMIITFWLPQLN-GY-MEKSTPYECGFDPM
nad3_ktun -------------MFFVLSLVLFTFLLSLVLLSVSLSLTKKK-MMNREKSSPFECGFDPK
nad3_lter -------------MILTALSSAIALLVPIIILGAAWVLASRS-TEDREKSSPFECGFDPK
nad3_marpo -----------MEFAPIFVYLVISLLLSLILIGVSFLFASSSSLAYPEKLSAYECGFDPF
nad3_metse ---------MYTEFYGILVLLIFSVVLSAIISGASYILGDKQ--PDREKVSAYECGFDPF
nad3_picca MLNYFVYPYGIENDMGMKFYMMLVPMMSMVLMMINYMMTNKS-DNNMNKTGPYECGFDSF
nad3_podan -------------MSSMTLFILFVSIIALLFLFINLIFAPHN--PYQEKYSIFECGFHSF
nad3_prowi ----------MYEFLGILIYFFIALALSLLLLGLPFLVSTRK--ADPEKISAYECGFDPF
nad3_recam -----MNTMILSEYLSVLIFFIFSFGLSCIILGLSYVLATQN--ADTEKLSPYECGFNPF
#############
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
nad3_parde D-DARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLS-DVAFWGLMVFLAVLTVGFA
nad3_acaca E-DTRSKFNVRYYLIAILFMIFDLEIMYLFPWSISISTGS-FFGVWAIFLFLIILTVGFI
nad3_allma G-DARQKFDVSFYLIAILFIIFDLEVVFILPFASVIHNVS-LLGGWITIIFLVILTIGFI
nad3_apec N-SARVPFSFRFFLVAILFLLFDLEIALLFPLPFSVFFH--P--IHTP----LILTVGLI
nad3_arath G-DARSRFDIRFYLVSILFLIPDLEVTFFFPWAVPPNKID-LFGFWSMMAFLFILTIGFL
nad3_balca A-SARLPFSLRFFLVAILFLLFDLEIALLLPFPAALSARDPQLSFTLAFLILLILTIGLI
nad3_chocr D-DARATFDIRFYLVAILFLIFDLEISFLFPWSLVLGEIS-IIGFWSMIVFLVILTIGFI
nad3_drome S-SSRLPFSLRFFLITIIFLIFDVEIALILPMIIIMKYSNIMIWTITSIIFILILLIGLY
nad3_human S-PARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMVMSSLLLIIILALSLA
nad3_ktun S-SARLPFSMRFFLITVVFLVFDVEIVLLLPYLFSSGWSIDVFSLVGSMMILVILIIGVL
nad3_lter S-TARIPFSTRFFLLAIIFIVFDIEIVLLMPLPTILHTSDVFTTVTTSVLFLMILLIGLI
nad3_marpo D-DARSRFDIRFYLVSILFIIFDLEVTFLFPWAVSLNKIG-LFGFWSMMVFLFILTIGFV
nad3_metse G-TPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVCNQVF-PFGYWTMIVFLAVLTLGLV
nad3_picca R-QSRTTYSIKFILIAILFLPFDLELTSILPYTLSMYNTN-IYGLFILLYFLLPLIIGFI
nad3_podan LGQNRTQFGVKFFIFALVYLLLDLEILLTFPFAVSEYVNN-IYGLIILLGFITIITIGFV
nad3_prowi D-DARGRFDIQFYLVAILFIIFDLEVAFLFPWALTLNKIG-YFGFWSMMLFLFILTVGFI
nad3_recam D-DARGAFDVRFYLVAILFIIFDLEVAFLFPWAVALSDVT-IFGFWTMFIFLLILTVGFI
############################### #########
130 140 150
=========+=========+=========+===
nad3_parde YEWKKGALEWA----------------------
nad3_acaca YEWQKGALEWD----------------------
nad3_allma YEFVSGAITDSF---------------------
nad3_apec FEWVQGGLDWAE---------------------
nad3_arath YEWKRGASDRE----------------------
nad3_balca YEWMEGGLEWAE---------------------
nad3_chocr YEWYKGALEWE----------------------
nad3_drome HEWNQGMLNWSN---------------------
nad3_human YEWLQKGLDWTE---------------------
nad3_ktun HEWSEGSLEWFSSSN------------------
nad3_lter HEWKEGSLDWSS---------------------
nad3_marpo YEWKKGALDWE----------------------
nad3_metse YEWLKGGLEWE----------------------
nad3_picca IEINTKAIYMTKMFNRNVKSMTSYVKYNNKI--
nad3_podan YELGKSALKIDSRQVITMTRFNYSSTIEYLGKI
nad3_prowi YEWRKGALDWS----------------------
nad3_recam YEWKKGALDWE----------------------
########
Parameters used Minimum Number Of Sequences For A Conserved Position: 9 Minimum Number Of Sequences For A Flanking Position: 14 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 6 Allowed Gap Positions: All Use Similarity Matrices: Yes
Flank positions of the 2 selected block(s) Flanks: [48 91] [112 128] New number of positions in nad3.pir-gb: 61 (39% of the original 153 positions)