TBLASTX 2.2.26+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: NCBI Transcript Reference Sequences 2,903,055 sequences; 4,626,651,242 total letters Query= gi|356995852:1-490 Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA Length=490 Score E Sequences producing significant alignments: (Bits) Value N ref|NM_013633.3| Mus musculus POU domain, class 5, transcription... 418 2e-115 1 ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (... 415 3e-114 1 ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC1005051... 403 8e-111 1 ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC1005051... 403 8e-111 1 ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Po... 349 2e-94 1 ref|XM_528230.3| PREDICTED: Pan troglodytes POU class 5 homeobox... 126 2e-27 1 ref|XR_021762.2| PREDICTED: Pan troglodytes POU domain, class 5,... 125 4e-27 1 ref|NR_034180.1| Homo sapiens POU class 5 homeobox 1 pseudogene ... 125 4e-27 1 ref|XM_002752481.1| PREDICTED: Callithrix jacchus POU domain, cl... 125 5e-27 1 ref|XM_002746317.1| PREDICTED: Callithrix jacchus POU domain, cl... 125 5e-27 1 ref|XM_001135162.2| PREDICTED: Pan troglodytes POU class 5 homeo... 124 1e-26 1 ref|NM_001114955.1| Macaca mulatta POU class 5 homeobox 1 (POU5F... 124 1e-26 1 ref|NR_033594.1| Mus musculus predicted gene 5712 (Gm5712), non-... 124 1e-26 1 ref|NM_001252041.1| Pan troglodytes POU class 5 homeobox 1 (POU5... 124 1e-26 1 ref|XR_024993.2| PREDICTED: Pan troglodytes POU domain, class 5,... 124 1e-26 1 ref|NM_002701.4| Homo sapiens POU class 5 homeobox 1 (POU5F1), t... 124 1e-26 1 ref|XM_002809098.1| PREDICTED: Pongo abelii POU domain, class 5,... 122 5e-26 1 ref|XM_003505863.1| PREDICTED: Cricetulus griseus POU domain, cl... 121 1e-25 1 ref|NM_001173441.1| Felis catus POU class 5 homeobox 1 (POU5F1),... 120 1e-25 1 ref|NR_036440.1| Homo sapiens POU class 5 homeobox 1 pseudogene ... 120 2e-25 1 >ref|NM_013633.3| Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA Length=1353 Score = 418 bits (908), Expect = 2e-115 Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%) Frame = +1/+1 Query 1 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 180 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS Sbjct 1 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 180 Query 181 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 360 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE Sbjct 181 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 360 Query 361 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N Sbjct 361 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489 >ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_105837.2| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141464.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141446.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA Length=570 Score = 415 bits (900), Expect = 3e-114 Identities = 162/163 (99%), Positives = 162/163 (99%), Gaps = 0/163 (0%) Frame = +1/-1 Query 1 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 180 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS Sbjct 570 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 391 Query 181 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 360 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE Sbjct 390 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 211 Query 361 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489 WKATQREPPLSPVPTAPMP*SWRRWNQL RSPRT*KPCRRS*N Sbjct 210 WKATQREPPLSPVPTAPMP*SWRRWNQLQRSPRT*KPCRRS*N 82 >ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104), partial miscRNA Length=505 Score = 403 bits (875), Expect = 8e-111 Identities = 157/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%) Frame = +1/-1 Query 16 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 195 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV Sbjct 505 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 326 Query 196 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 375 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ Sbjct 325 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 146 Query 376 REPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489 REPPLSPVPTAPMP*SWRRWNQL RSPRT*KPCRRS*N Sbjct 145 REPPLSPVPTAPMP*SWRRWNQLQRSPRT*KPCRRS*N 32 >ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104), partial miscRNA Length=505 Score = 403 bits (875), Expect = 8e-111 Identities = 157/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%) Frame = +1/-1 Query 16 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 195 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV Sbjct 505 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 326 Query 196 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 375 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ Sbjct 325 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 146 Query 376 REPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489 REPPLSPVPTAPMP*SWRRWNQL RSPRT*KPCRRS*N Sbjct 145 REPPLSPVPTAPMP*SWRRWNQLQRSPRT*KPCRRS*N 32 >ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Pou5f1), mRNA gb|BC158566.1| Rattus norvegicus POU class 5 homeobox 1, mRNA (cDNA clone MGC:187285 IMAGE:9092936), complete cds Length=1388 Score = 349 bits (757), Expect = 2e-94 Identities = 138/161 (86%), Positives = 143/161 (89%), Gaps = 0/161 (0%) Frame = +1/+1 Query 7 KPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKG 186 K SLGE SFHQAPGSG PPSPWLDTWLQTSPSHPH VGVMGQQGWSRAGW LEPG*AS+G Sbjct 19 KQSLGESSFHQAPGSGSPPSPWLDTWLQTSPSHPHLVGVMGQQGWSRAGWTLEPG*ASRG 198 Query 187 LQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWK 366 LQVGLESDQ QR WGSP V HTSS EGWHTVDLRLDWA*SPKLAWRLCS RARQEHEW+ Sbjct 199 LQVGLESDQVQRCWGSPRVPQHTSSVEGWHTVDLRLDWA*SPKLAWRLCSPRARQEHEWR 378 Query 367 ATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489 AT+REPPL PV AP P*SWRRWN +PRSPR *KPCRRS*+ Sbjct 379 ATRREPPLGPVLPAPAP*SWRRWNLVPRSPRI*KPCRRS*S 501 >ref|XM_528230.3| PREDICTED: Pan troglodytes POU class 5 homeobox 1B (POU5F1B), mRNA Length=1601 Score = 126 bits (274), Expect = 2e-27 Identities = 53/73 (73%), Positives = 59/73 (81%), Gaps = 0/73 (0%) Frame = -1/-2 Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254 +FS+FTA G + QGS E PSELLST PA PSG +VS P WGT P+PT*GPQYAIPPQNS Sbjct 640 SFSSFTAPGGTVQGSGEAPSELLSTPTPASPSG*EVSKPPWGTSPAPT*GPQYAIPPQNS 461 Query 253 YAGGHGEIPNTSE 215 Y GGHG IP+TSE Sbjct 460 YGGGHGGIPHTSE 422 >ref|XR_021762.2| PREDICTED: Pan troglodytes POU domain, class 5, transcription factor 1-like (LOC741863), miscRNA Length=1218 Score = 125 bits (272), Expect = 4e-27 Identities = 53/73 (73%), Positives = 60/73 (82%), Gaps = 0/73 (0%) Frame = -1/-2 Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254 +FS+FTA G + QGS EVPSELLST PA PSG +VS P WGT +PT*GPQYAIPPQNS Sbjct 380 SFSSFTAPGGTVQGSREVPSELLSTLTPASPSG*EVSKPPWGTSRTPT*GPQYAIPPQNS 201 Query 253 YAGGHGEIPNTSE 215 Y+GGHG IP+TSE Sbjct 200 YSGGHGGIPHTSE 162 >ref|NR_034180.1| Homo sapiens POU class 5 homeobox 1 pseudogene 4 (POU5F1P4), non-coding RNA Length=1083 Score = 125 bits (272), Expect = 4e-27 Identities = 53/73 (73%), Positives = 60/73 (82%), Gaps = 0/73 (0%) Frame = -1/-1 Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254 +FS+FTA G + QGS EVPSELLST PA PSG +VS P WGT +PT*GPQYAIPPQNS Sbjct 381 SFSSFTAPGGTVQGSREVPSELLSTLTPASPSG*EVSKPPWGTSRTPT*GPQYAIPPQNS 202 Query 253 YAGGHGEIPNTSE 215 Y+GGHG IP+TSE Sbjct 201 YSGGHGGIPHTSE 163 >ref|XM_002752481.1| PREDICTED: Callithrix jacchus POU domain, class 5, transcription factor 1-like (LOC100389924), mRNA Length=1368 Score = 125 bits (271), Expect = 5e-27 Identities = 53/72 (74%), Positives = 58/72 (81%), Gaps = 0/72 (0%) Frame = -1/-2 Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254 +FS+FTA G QGS E PSELLST APA PSG +VS P WGT P+PT*GPQYAIPPQNS Sbjct 416 SFSSFTAPGGMVQGSGEAPSELLSTPAPASPSG*EVSKPPWGTSPTPT*GPQYAIPPQNS 237 Query 253 YAGGHGEIPNTS 218 Y GGHG IP+TS Sbjct 236 YGGGHGGIPHTS 201 >ref|XM_002746317.1| PREDICTED: Callithrix jacchus POU domain, class 5, transcription factor 1-like (LOC100384946), mRNA Length=1417 Score = 125 bits (271), Expect = 5e-27 Identities = 53/72 (74%), Positives = 58/72 (81%), Gaps = 0/72 (0%) Frame = -1/-1 Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254 +FS+FTA G QGS E PSELLST APA PSG +VS P WGT P+PT*GPQYAIPPQNS Sbjct 466 SFSSFTAPGGMVQGSGEAPSELLSTPAPASPSG*EVSKPPWGTSPTPT*GPQYAIPPQNS 287 Query 253 YAGGHGEIPNTS 218 Y GGHG IP+TS Sbjct 286 YGGGHGGIPHTS 251 Lambda K H 0.318 0.134 0.401 Effective search space used: 149315297940 Database: NCBI Transcript Reference Sequences Posted date: Mar 1, 2012 8:32 PM Number of letters in database: 4,626,651,242 Number of sequences in database: 2,903,055 Matrix: BLOSUM62 Neighboring words threshold: 13 Window for multiple hits: 40