Build started at 2025-03-17T15:46:08.648089 Main binary: /usr/bin/python3.6 Build Options: -Dbuildtype=release Python system: Linux The Meson build system Version: 0.61.5 Source dir: /home/psgendb/local/install/freebayes-1.3.9 Build dir: /home/psgendb/local/install/freebayes-1.3.9/build Build type: native build Project name: freebayes Project version: 1.3.9 Sanity testing C compiler: cc Is cross compiler: False. Sanity check compiler command line: cc sanitycheckc.c -o sanitycheckc.exe -D_FILE_OFFSET_BITS=64 Sanity check compile stdout: ----- Sanity check compile stderr: ----- Running test binary command: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/sanitycheckc.exe C compiler for the host machine: cc (gcc 8.5.0 "cc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-24)") C linker for the host machine: cc ld.bfd 2.30-125 Sanity testing C++ compiler: c++ Is cross compiler: False. Sanity check compiler command line: c++ sanitycheckcpp.cc -o sanitycheckcpp.exe -D_FILE_OFFSET_BITS=64 Sanity check compile stdout: ----- Sanity check compile stderr: ----- Running test binary command: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/sanitycheckcpp.exe C++ compiler for the host machine: c++ (gcc 8.5.0 "c++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-24)") C++ linker for the host machine: c++ ld.bfd 2.30-125 Sanity testing C compiler: cc Is cross compiler: False. Sanity check compiler command line: cc sanitycheckc.c -o sanitycheckc.exe -D_FILE_OFFSET_BITS=64 Sanity check compile stdout: ----- Sanity check compile stderr: ----- Running test binary command: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/sanitycheckc.exe C compiler for the build machine: cc (gcc 8.5.0 "cc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-24)") C linker for the build machine: cc ld.bfd 2.30-125 Sanity testing C++ compiler: c++ Is cross compiler: False. Sanity check compiler command line: c++ sanitycheckcpp.cc -o sanitycheckcpp.exe -D_FILE_OFFSET_BITS=64 Sanity check compile stdout: ----- Sanity check compile stderr: ----- Running test binary command: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/sanitycheckcpp.exe C++ compiler for the build machine: c++ (gcc 8.5.0 "c++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-24)") C++ linker for the build machine: c++ ld.bfd 2.30-125 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: x86_64 Host machine cpu: x86_64 Target machine cpu family: x86_64 Target machine cpu: x86_64 Pkg-config binary for 1 is not cached. Pkg-config binary missing from cross or native file, or env var undefined. Trying a default Pkg-config fallback at pkg-config Found pkg-config: /usr/bin/pkg-config (1.4.2) Determining dependency 'liblzma' with pkg-config executable '/usr/bin/pkg-config' env[PKG_CONFIG_PATH]: Called `/usr/bin/pkg-config --modversion liblzma` -> 0 5.2.4 env[PKG_CONFIG_PATH]: Called `/usr/bin/pkg-config --cflags liblzma` -> 0 env[PKG_CONFIG_ALLOW_SYSTEM_LIBS]: 1 env[PKG_CONFIG_PATH]: Called `/usr/bin/pkg-config --libs liblzma` -> 0 -L/usr/lib64 -llzma env[PKG_CONFIG_PATH]: Called `/usr/bin/pkg-config --libs liblzma` -> 0 -llzma Running compile: Working directory: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmpcbb49lz9 Command line: c++ /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmpcbb49lz9/testfile.cpp -o /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmpcbb49lz9/output.exe -D_FILE_OFFSET_BITS=64 -O0 -fpermissive Code: #include int main(void) { printf("%ld\n", (long)(sizeof(void *))); return 0; } Compiler stdout: Compiler stderr: Program stdout: 8 Program stderr: Running compile: Working directory: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmp3pg5bdml Command line: c++ /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmp3pg5bdml/testfile.cpp -o /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmp3pg5bdml/output.obj -c -D_FILE_OFFSET_BITS=64 -O0 -fpermissive --print-search-dirs Code: Compiler stdout: install: /usr/lib/gcc/x86_64-redhat-linux/8/ programs: =/usr/libexec/gcc/x86_64-redhat-linux/8/:/usr/libexec/gcc/x86_64-redhat-linux/8/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/bin/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/bin/ libraries: =/usr/lib/gcc/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/lib/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/:/lib/x86_64-redhat-linux/8/:/lib/../lib64/:/usr/lib/x86_64-redhat-linux/8/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/lib/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../:/lib/:/usr/lib/ Compiler stderr: Run-time dependency liblzma found: YES 5.2.4 Run-time dependency threads found: YES Running compile: Working directory: /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmpdsnd8133 Command line: c++ /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmpdsnd8133/testfile.cpp -o /home/psgendb/local/install/freebayes-1.3.9/build/meson-private/tmpdsnd8133/output.exe -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wl,--start-group -llibwfa2 -Wl,--end-group -Wl,--allow-shlib-undefined Code: int main(void) { return 0; } Compiler stdout: Compiler stderr: /usr/bin/ld: cannot find -llibwfa2 collect2: error: ld returned 1 exit status meson.build:28:0: ERROR: C++ shared or static library 'libwfa2' not found