Copyright (c) 2007-2011 Illumina, Inc. This software is covered by the "Illumina Genome Analyzer Software License Agreement" and the "Illumina Source Code License Agreement", and certain third party copyright/licenses, and any user of this source file is bound by the terms therein (see accompanying files Illumina_Genome_Analyzer_Software_License_Agreement.pdf and Illumina_Source_Code_License_Agreement.pdf and third party copyright/license notices). The CASAVA 1.8 distribution includes the following code libraries, and are distributed according to the licensing terms governing each library. ****************************************************************** SAMTools 0.1.8 Copyright (c) 2008-2009 Genome Research Ltd. 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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. ****************************************************************** CMake - Cross Platform Makefile Generator Copyright 2000-2009 Kitware, Inc., Insight Software Consortium All rights reserved. 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(C)2008-09 Copyright Kitware, Inc. ****************************************************************** Boost Software License - Version 1.0 - August 17th, 2003 Permission is hereby granted, free of charge, to any person or organization obtaining a copy of the software and accompanying documentation covered by this license (the "Software") to use, reproduce, display, distribute, execute, and transmit the Software, and to prepare derivative works of the Software, and to permit third-parties to whom the Software is furnished to do so, all subject to the following: The copyright notices in the Software and this entire statement, including the above license grant, this restriction and the following disclaimer, must be included in all copies of the Software, in whole or in part, and all derivative works of the Software, unless such copies or derivative works are solely in the form of machine-executable object code generated by a source language processor. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. ****************************************************************** ChartDirector Version 4.1 Copyright (C) 2006 Advanced Software Engineering Limited All Rights Reserved ************************* LICENSE AGREEMENT ************************* You should carefully read the following terms and conditions before using the ChartDirector software. Your use of the ChartDirector software indicates your acceptance of this license agreement. Do not use the ChartDirector software if you do not agree with the license agreement. Disclaimer of Warranty The ChartDirector software and the accompanying files are distributed and licensed "as is". Advanced Software Engineering Limited disclaims all warranties, either express or implied, including, but not limited to implied warranties of merchantability and fitness for a particular purpose. Should the ChartDirector software prove defective, the licensee assumes the risk of paying the entire cost of all necessary servicing, repair, or correction and any incidental or consequential damages. In no event will Advanced Software Engineering Limited be liable for any damages whatsoever (including without limitation damages for loss of business profits, business interruption, loss of business information and the like) arising out of the use or the inability to use the ChartDirector software even if Advanced Software Engineering Limited has been advised of the possibility of such damages. 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Subjected to the conditions in this license agreement: - You may use the unmodified trial version of the ChartDirector software without charge. - You may redistribute the unmodified trial version of the ChartDirector software, provided you do not charge for it. - You may embed the unmodified trial version of the ChartDirector software (or part of it), in a product and distribute the product, provided you do not charge for the product. If you do not want the yellow banner messages appearing in the charts, or you want to embed the ChartDirector software (or part of it) in a product that is not free, you must purchase a commercial license to use the ChartDirector software from Advanced Software Engineering Limited. Please refer to Advanced Software Engineering's web site at www.advsofteng.com for details. Credits With the exception of the Java edition of the ChartDirector software, all editions of the ChartDirector software are developed using code from the Independent JPEG Group and the FreeType team. Any software that is derived from the ChartDirector software must include the following text in its documentation. This applies to both the trial version as well as to the commercial licensed version of the ChartDirector software. - This software is based in part on the work of the Independent JPEG Group - This software is based in part of the work of the FreeType Team