This is the Consensus Assessment of Sequence And VAriation (CASAVA) software package. CASAVA is covered by the "Illumina Public Source License" agreement and bound by the terms therein. Installing CASAVA ================== Supported Platform ------------------ Linux Requirements ------------ The following tools and packages are required to build CASAVA: - bash (>= 3.0) - GNU coreutils (>= 5.0) - GNU make (>= 3.80) - gcc and g++ (>= 3.4.0 except 4.0.2) - libz (>=1.2.3) - libxml2 (>=2.6.0) The following tools and packages are bundled together with the CASAVA distribution and will be automatically built when necessary: - CMake 2.8.0 - boost 1.44.0 Installation procedure ---------------------- Decompress the tarball, run the configure script provided in the source directory of CASAVA, make, and make install. It is strongly recommended to configure and build CASAVA outside the source directory. The installation steps for a default installation in /usr/local would then be: $ tar -jxf CASAVA_v1.8.0.tar.bz2 $ mkdir CASAVA_v1.8.0-build $ cd CASAVA_v1.8.0-build $ ../CASAVA_v1.8.0/configure $ make $ make install You may want to use the --prefix= option to specify a custom installation directory for CASAVA: $ ../CASAVA_v1.8.0/configure --prefix=/opt The --static command line flag will create static (standalone) binaries: $ ../CASAVA_v1.8.0/configure --prefix=/opt --static Use the --help option to see all the supported options. $ ../CASAVA_v1.8.0/configure --help Installation paths ------------------ Installation directories can either be specified as absolute paths or as relative paths, in which case, the actual installation path is prepended to the specified relative path. Empty paths are replaced by default values. The environment variable DESTDIR is prepended to the actual installation paths during the installation. For instance, if "bindir" is specified as the relative path "bin", the full installation path for all executables is "${DESTDIR}prefix/bin". If "bindir" is "/bin", the full installation path is "${DESTDIR}/bin". Troubleshooting --------------- Contact Illumina Customer Support for technical assistance: - Email techsupport@illumina.com - Toll-free Customer Hotline 1-800-809-ILMN (1-800-809-4566) - International Customer Hotline 1-858-202-ILMN (1-858-202-4566) - Illumina Website http://www.illumina.com When reporting an issue, it is critical to capture all the output and error messages produced.