# edamtoacd.dat # This file lists values for the ACD relations: attribute taken from the EDAM ontology, for ACD data items with specified attributes. # # The meaning of the columns is: # ACD datatype | Value of relations: attribute | Attributes that must be specified # IMPORTANT. When used with the EMBOSS application "acdrelations": # - the first line for each datatype should have no attributes defined - this gives the default value of the relations: attribute. # - subsequent lines for a given datatype must be in order of number of attributes in the third column (lowest number first) # - the attribute:value pairs (third column) must be delimited by ';' # align | "EDAM: Sequence alignment data" | align | "EDAM: Nucleotide sequence alignment data" | type:"nucleotide" align | "EDAM: Protein sequence alignment data" | type:"protein" align | "EDAM: Multiple sequence alignment data" | minseqs:"3" align | "EDAM: Pairwise sequence alignment data" | minseqs:"2"; maxseqs:"2" align | "EDAM: Multiple protein sequence alignment data" | type:"protein"; minseqs:"3" align | "EDAM: Multiple nucleotide sequence alignment data" | type:"nucleotide"; minseqs:"3" align | "EDAM: Pairwise nucleotide sequence alignment data" | type:"nucleotide"; minseqs:"2"; maxseqs:"2" align | "EDAM: Pairwise protein sequence alignment data" | type:"protein"; minseqs:"2"; maxseqs:"2" array | "EDAM: Generic float array" | # arraychar | "EDAM: Generic character array" | # arrayword | "EDAM: Generic string array" | # arraystring | "EDAM: Generic string array" | # arrayint | "EDAM: Generic integer array" | # arrayfloat | "EDAM: Generic float array" | # arraydouble | "EDAM: Generic double array" | # boolean | "EDAM: Generic boolean" | # codon | "EDAM: Codon usage table" | # cpdb | "EDAM: Protein tertiary structure" | # datafile | "EDAM: EMBOSS data file" | # directory | "EDAM: Directory" | # dirlist | "EDAM: Directory" | # discretestates | "EDAM: PHYLIP discrete states file" | # distances | "EDAM: PHYLIP phylogenetic distance matrix file" | # features | "EDAM: Sequence feature table" | features | "EDAM: Nucleotide sequence feature table" | type:"nucleotide" features | "EDAM: Protein sequence feature table" | type:"protein" # featout | "EDAM: Sequence feature table" | featout | "EDAM: Nucleotide sequence feature table" | type:"nucleotide" featout | "EDAM: Protein sequence feature table" | type:"protein" # filelist | "EDAM: List of file names" | # float | "EDAM: Generic float" | # frequencies | "EDAM: PHYLIP phylogenetic character frequency values file" | # graph | "EDAM: EMBOSS graph file" | # # infile | "EDAM: Free text file" | infile | "EDAM: Free text file" | binary:"N" infile | "EDAM: Binary file" | binary:"Y" # integer | "EDAM: Generic integer" | # list | "EDAM: Generic string array" | # matrix | "EDAM: Integer comparison matrix" | matrix | "EDAM: Integer nucleotide comparison matrix" | protein:"N" matrix | "EDAM: Integer amino acid comparison matrix" | protein:"Y" # matrixf | "EDAM: Float comparison matrix" | matrixf | "EDAM: Float nucleotide comparison matrix" | protein:"N" matrixf | "EDAM: Float amino acid comparison matrix" | protein:"Y" # outcodon | "EDAM: Codon usage table" | # outcpdb | "EDAM: Protein tertiary structure" | # outdata | "EDAM: EMBOSS data file" | # outdir | "EDAM: Directory" | # outdiscrete | "EDAM: PHYLIP discrete states file" | outdistance | "EDAM: PHYLIP phylogenetic distance matrix file" | # outfile | "EDAM: Free text file" | outfile | "EDAM: Free text file" | binary:"N" outfile | "EDAM: Binary file" | binary:"Y" # outfile | "EDAM:Nucleic acid conformation report" | knowntype:"banana output" outfile | "EDAM:Nucleic acid conformation report" | knowntype:"btwisted output" outfile | "EDAM:Codon adaptation index " | knowntype:"cai output" outfile | "EDAM:Protein charge plot" | knowntype:"charge output" outfile | "EDAM:Coding region report" | knowntype:"checktrans output" outfile | "EDAM:Nc statistic" | knowntype:"chips output" outfile | "EDAM:Codon usage fraction difference" | knowntype:"codcmp output" outfile | "EDAM:Sequence record" | knowntype:"coderet output" outfile | "EDAM:CpG island and isochore report" | knowntype:"cpgplot output" outfile | "EDAM:CpG island and isochore report" | knowntype:"cpgreport output" outfile | "EDAM:Codon usage table file" | knowntype:"cusp output" outfile | "EDAM:Codon usage table file" | knowntype:"cutgextract output" outfile | "EDAM:Database index" | knowntype:"dbiblast output" outfile | "EDAM:Database index" | knowntype:"dbifasta output" outfile | "EDAM:Database index" | knowntype:"dbiflat output" outfile | "EDAM:Database index" | knowntype:"dbigcg output" outfile | "EDAM:Database index" | knowntype:"dbxfasta output" outfile | "EDAM:Database index" | knowntype:"dbxflat output" outfile | "EDAM:Database index" | knowntype:"dbxgcg output" outfile | "EDAM:Database index" | knowntype:"dbxreport output" outfile | "EDAM:Database index" | knowntype:"dbxstat output" outfile | "EDAM:Phylogenetic distance matrix file" | knowntype:"distmat output" outfile | "EDAM:DIALIGN sequence alignment file" | knowntype:"edialign output" outfile | "EDAM:List of file names" | knowntype:"embossdata output" outfile | "EDAM:Application version information" | knowntype:"embossversion output" outfile | "EDAM:Clustalw tree record" | knowntype:"emma output" outfile | "EDAM:Peptide molecular weight hits report" | knowntype:"emowse output" outfile | "EDAM:Sequence record" | knowntype:"entret output" outfile | "EDAM:PEST site report" | knowntype:"epestfind output" outfile | "EDAM:Primer report" | knowntype:"eprimer3 output" outfile | "EDAM:Repeat sequence map report" | knowntype:"equicktandem output" outfile | "EDAM:Coding region report" | knowntype:"est2genome output" outfile | "EDAM:Repeat sequence map report" | knowntype:"etandem output" outfile | "EDAM:Enzyme kinetics report" | knowntype:"findkm output" outfile | "EDAM:Sequence composition report" | knowntype:"freak output" outfile | "EDAM:CpG island and isochore report" | knowntype:"geecee output" outfile | "EDAM:Protein isoelectric point report" | knowntype:"giep output" outfile | "EDAM:Peptide hydrophobic moment report" | knowntype:"hmoment output" outfile | "EDAM:Protein isoelectric point report" | knowntype:"iep output" outfile | "EDAM:Sequence alignment information report" | knowntype:"infoalign output" outfile | "EDAM:Nucleotide base information report" | knowntype:"infobase output" outfile | "EDAM:Amino acid information report" | knowntype:"inforesidue output" outfile | "EDAM:Sequence information report" | knowntype:"infoseq output" outfile | "EDAM:CpG island and isochore report" | knowntype:"isochore output" outfile | "EDAM:EMBOSS List File" | knowntype:"listor output" outfile | "EDAM:EMBOSS megamerger log file" | knowntype:"megamerger output" outfile | "EDAM:Peptide molecular weight report" | knowntype:"mwcontam output" outfile | "EDAM:Peptide molecular weight report" | knowntype:"mwfilter output" outfile | "EDAM:Protein secondary structure record" | knowntype:"newcoils output" outfile | "EDAM:CpG island and isochore report" | knowntype:"newcpgreport output" outfile | "EDAM:CpG island and isochore report" | knowntype:"newcpgseek output" outfile | "EDAM:Free text file" | knowntype:"nohtml output" outfile | "EDAM:Free text file" | knowntype:"noreturn output" outfile | "EDAM:Free text file" | knowntype:"nospace output" outfile | "EDAM:Free text file" | knowntype:"notab output" outfile | "EDAM:List of sequence accession numbers" | knowntype:"oddcomp output" outfile | "EDAM:Repeat sequence map report" | knowntype:"palindrome output" outfile | "EDAM:Protein sequence properties report" | knowntype:"pepinfo output" outfile | "EDAM:Nucleotide sequence translation report" | knowntype:"prettyseq output" outfile | "EDAM:Primer report" | knowntype:"prima output" outfile | "EDAM:Primer report" | knowntype:"primers output" outfile | "EDAM:Primer report" | knowntype:"primersearch output" outfile | "EDAM:Sequence-profile alignment report" | knowntype:"profit output" outfile | "EDAM:Sequence profile record" | knowntype:"prophecy output" outfile | "EDAM:Fingerprint alignment report" | knowntype:"pscan output" outfile | "EDAM:Restriction enzyme report" | knowntype:"redata output" outfile | "EDAM:Restriction map report" | knowntype:"remap output" outfile | "EDAM:EMBOSS restover recognition site report" | knowntype:"restover output" outfile | "EDAM:Application information report" | knowntype:"seealso output" outfile | "EDAM:Multiple sequence alignment record" | knowntype:"showalign output" outfile | "EDAM:Database information report" | knowntype:"showdb output" outfile | "EDAM:Database information report" | knowntype:"showdball output" outfile | "EDAM:General sequence features report" | knowntype:"showfeat output" outfile | "EDAM:Nucleotide sequence translation report" | knowntype:"showorf output" outfile | "EDAM:Protein sequence features report" | knowntype:"showpep output" outfile | "EDAM:Nucleotide sequence features report" | knowntype:"showseq output" outfile | "EDAM:Nucleotide sequence translation report" | knowntype:"sixpack output" outfile | "EDAM:Primer match report" | knowntype:"stssearch output" outfile | "EDAM:Synonymous codon usage statictic plot" | knowntype:"syco output" outfile | "EDAM:Sequence information report" | knowntype:"textsearch output" outfile | "EDAM:Application information report" | knowntype:"tfm output" outfile | "EDAM:Transcription factor binding site report" | knowntype:"tfscan output" outfile | "EDAM:Transmembrane region report" | knowntype:"tmap output" outfile | "EDAM:Free text file" | knowntype:"trimspace output" outfile | "EDAM:Application log file" | knowntype:"union output" outfile | "EDAM:EMBOSS vectorstrip log file" | knowntype:"vectorstrip output" outfile | "EDAM:Database information report" | knowntype:"whichdb output" outfile | "EDAM:Base position variability report" | knowntype:"wobble output" outfile | "EDAM:Sequence composition report" | knowntype:"wordcount output" outfile | "EDAM:Application information report" | knowntype:"wossname output" outfile | "EDAM:EMBOSS List File" | knowntype:"yank output" # outfile | "EDAM:Free text file" | knowntype:"crystalball output" outfile | "EDAM:Directory" | knowntype:"allversusall output" outfile | "EDAM:Motif map report" | knowntype:"eiprscan output" outfile | "EDAM:Signal peptide sequence map report" | knowntype:"echlorop output" outfile | "EDAM:Signal peptide sequence map report" | knowntype:"elipop output" outfile | "EDAM:Protein post-translation modification site report" | knowntype:"enetnglyc output" outfile | "EDAM:Protein post-translation modification site report" | knowntype:"enetoglyc output" outfile | "EDAM:Protein post-translation modification site report" | knowntype:"enetphos output" outfile | "EDAM:Protein cleavage site report" | knowntype:"eprop output" outfile | "EDAM:Signal peptide sequence map report" | knowntype:"esignalp output" outfile | "EDAM:Transmembrane region report" | knowntype:"etmhmm output" outfile | "EDAM:Protein post-translation modification site report" | knowntype:"eyinoyang output" # outfileall | "EDAM: Free text file" | outfileall | "EDAM: Free text file" | binary:"N" outfileall | "EDAM: Binary file" | binary:"Y" # outfreq | "EDAM: PHYLIP phylogenetic character frequency values file" | # outmatrix | "EDAM: Integer comparison matrix" | outmatrix | "EDAM: Integer nucleotide comparison matrix" | protein:"N" outmatrix | "EDAM: Integer amino acid comparison matrix" | protein:"Y" # outmatrixf | "EDAM: Float comparison matrix" | outmatrixf | "EDAM: Float nucleotide comparison matrix" | protein:"N" outmatrixf | "EDAM: Float amino acid comparison matrix" | protein:"Y" # outproperties | "EDAM: PHYLIP phylogenetic property values file" | # outscop | "EDAM: SCOP domain classification" | # outtree | "EDAM: PHYLIP phylogenetic tree report" | # pattern | "EMBOSS sequence pattern" | # properties | "EDAM: PHYLIP phylogenetic property values file" | # range | "EDAM: Generic integer range" | # regexp | "EDAM: Regular expression" | # report | "EDAM: EMBOSS report" | report | "EDAM: Sequence feature table" | rformat:"embl" report | "EDAM: Sequence feature table" | rformat:"genbank" report | "EDAM: Sequence feature table" | rformat:"gff" report | "EDAM: Sequence feature table" | rformat:"pir" report | "EDAM: Sequence feature table" | rformat:"swiss" report | "EDAM: Sequence feature table" | rformat:"feattable" report | "EDAM: Nucleotide sequence feature table" | rformat:"embl"; type:"nucleotide" report | "EDAM: Nucleotide sequence feature table" | rformat:"genbank"; type:"nucleotide" report | "EDAM: Nucleotide sequence feature table" | rformat:"gff"; type:"nucleotide" report | "EDAM: Nucleotide sequence feature table" | rformat:"pir"; type:"nucleotide" report | "EDAM: Nucleotide sequence feature table" | rformat:"swiss"; type:"nucleotide" report | "EDAM: Nucleotide sequence feature table" | rformat:"feattable"; type:"nucleotide" report | "EDAM: Protein sequence feature table" | rformat:"embl"; type:"protein" report | "EDAM: Protein sequence feature table" | rformat:"genbank"; type:"protein" report | "EDAM: Protein sequence feature table" | rformat:"gff"; type:"protein" report | "EDAM: Protein sequence feature table" | rformat:"pir"; type:"protein" report | "EDAM: Protein sequence feature table" | rformat:"swiss"; type:"protein" report | "EDAM: Protein sequence feature table" | rformat:"feattable"; type:"protein" # scop | "EDAM: SCOP domain classification" | # selection | "EDAM: Generic string array" | # sequence | "EDAM: Sequence" | sequence | "EDAM: Sequence" | type:"any" sequence | "EDAM: Sequence" | type:"gapany" sequence | "EDAM: Pure nucleotide sequence" | type:"nucleotide" sequence | "EDAM: Pure DNA sequence" | type:"dna" sequence | "EDAM: Pure RNA sequence" | type:"rna" sequence | "EDAM: Pure protein sequence" | type:"protein" sequence | "EDAM: Pure protein sequence" | type:"proteinstandard" sequence | "EDAM: Unambiguous pure nucleotide sequence" | type:"purenucleotide" sequence | "EDAM: Unambiguous pure DNA sequence" | type:"puredna" sequence | "EDAM: Unambiguous pure RNA sequence" | type:"purerna" sequence | "EDAM: Unambiguous pure protein sequence" | type:"pureprotein" sequence | "EDAM: Nucleotide sequence" | type:"gapnucleotide" sequence | "EDAM: Nucleotide sequence" | type:"gapnucleotidephylo" sequence | "EDAM: DNA sequence" | type:"gapdna" sequence | "EDAM: RNA sequence" | type:"gaprna" sequence | "EDAM: DNA sequence" | type:"gapdnaphylo" sequence | "EDAM: RNA sequence" | type:"gaprnaphylo" sequence | "EDAM: Protein sequence" | type:"gapprotein" sequence | "EDAM: Protein sequence" | type:"gapproteinphylo" sequence | "EDAM: Protein sequence" | type:"gapstopprotein" sequence | "EDAM: Protein sequence" | type:"stopprotein" sequence | "EDAM: Protein sequence" | type:"gapproteinstandard" sequence | "EDAM: Protein sequence" | type:"stopproteinstandard" # seqall | "EDAM: Sequence record" | seqall | "EDAM: Sequence record" | type:"any" seqall | "EDAM: Sequence record" | type:"gapany" seqall | "EDAM: Nucleotide sequence record" | type:"nucleotide" seqall | "EDAM: DNA sequence record" | type:"dna" seqall | "EDAM: RNA sequence record" | type:"rna" seqall | "EDAM: Protein sequence record" | type:"protein" seqall | "EDAM: Protein sequence record" | type:"proteinstandard" seqall | "EDAM: Nucleotide sequence record" | type:"purenucleotide" seqall | "EDAM: DNA sequence record" | type:"puredna" seqall | "EDAM: RNA sequence record" | type:"purerna" seqall | "EDAM: Protein sequence record" | type:"pureprotein" seqall | "EDAM: Nucleotide sequence record" | type:"gapnucleotide" seqall | "EDAM: Nucleotide sequence record" | type:"gapnucleotidephylo" seqall | "EDAM: DNA sequence record" | type:"gapdna" seqall | "EDAM: RNA sequence record" | type:"gaprna" seqall | "EDAM: DNA sequence record" | type:"gapdnaphylo" seqall | "EDAM: RNA sequence record" | type:"gaprnaphylo" seqall | "EDAM: Protein sequence record" | type:"gapprotein" seqall | "EDAM: Protein sequence record" | type:"gapproteinphylo" seqall | "EDAM: Protein sequence record" | type:"gapstopprotein" seqall | "EDAM: Protein sequence record" | type:"stopprotein" seqall | "EDAM: Protein sequence record" | type:"gapproteinstandard" seqall | "EDAM: Protein sequence record" | type:"stopproteinstandard" # seqout | "EDAM: Sequence" | seqout | "EDAM: Sequence" | type:"any" seqout | "EDAM: Sequence" | type:"gapany" seqout | "EDAM: Pure nucleotide sequence" | type:"nucleotide" seqout | "EDAM: Pure DNA sequence" | type:"dna" seqout | "EDAM: Pure RNA sequence" | type:"rna" seqout | "EDAM: Pure protein sequence" | type:"protein" seqout | "EDAM: Pure protein sequence" | type:"proteinstandard" seqout | "EDAM: Unambiguous pure nucleotide sequence" | type:"purenucleotide" seqout | "EDAM: Unambiguous pure DNA sequence" | type:"puredna" seqout | "EDAM: Unambiguous pure RNA sequence" | type:"purerna" seqout | "EDAM: Unambiguous pure protein sequence" | type:"pureprotein" seqout | "EDAM: Nucleotide sequence" | type:"gapnucleotide" seqout | "EDAM: DNA sequence" | type:"gapdna" seqout | "EDAM: RNA sequence" | type:"gaprna" seqout | "EDAM: DNA sequence" | type:"gapdnaphylo" seqout | "EDAM: RNA sequence" | type:"gaprnaphylo" seqout | "EDAM: Protein sequence" | type:"gapprotein" seqout | "EDAM: Protein sequence" | type:"gapproteinphylo" seqout | "EDAM: Protein sequence" | type:"gapstopprotein" seqout | "EDAM: Protein sequence" | type:"stopprotein" seqout | "EDAM: Protein sequence" | type:"gapproteinstandard" seqout | "EDAM: Protein sequence" | type:"stopproteinstandard" # seqoutall | "EDAM: Sequence record" | seqoutall | "EDAM: Sequence record" | type:"any" seqoutall | "EDAM: Sequence record" | type:"gapany" seqoutall | "EDAM: Nucleotide sequence record" | type:"nucleotide" seqoutall | "EDAM: DNA sequence record" | type:"dna" seqoutall | "EDAM: RNA sequence record" | type:"rna" seqoutall | "EDAM: Protein sequence record" | type:"protein" seqoutall | "EDAM: Protein sequence record" | type:"proteinstandard" seqoutall | "EDAM: Nucleotide sequence record" | type:"purenucleotide" seqoutall | "EDAM: DNA sequence record" | type:"puredna" seqoutall | "EDAM: RNA sequence record" | type:"purerna" seqoutall | "EDAM: Protein sequence record" | type:"pureprotein" seqoutall | "EDAM: Nucleotide sequence record" | type:"gapnucleotide" seqoutall | "EDAM: Nucleotide sequence record" | type:"gapnucleotidephylo" seqoutall | "EDAM: DNA sequence record" | type:"gapdna" seqoutall | "EDAM: RNA sequence record" | type:"gaprna" seqoutall | "EDAM: DNA sequence record" | type:"gapdnaphylo" seqoutall | "EDAM: RNA sequence record" | type:"gaprnaphylo" seqoutall | "EDAM: Protein sequence record" | type:"gapprotein" seqoutall | "EDAM: Protein sequence record" | type:"gapproteinphylo" seqoutall | "EDAM: Protein sequence record" | type:"gapstopprotein" seqoutall | "EDAM: Protein sequence record" | type:"stopprotein" seqoutall | "EDAM: Protein sequence record" | type:"gapproteinstandard" seqoutall | "EDAM: Protein sequence record" | type:"stopproteinstandard" # seqoutset | "EDAM: Sequence record" | seqoutset | "EDAM: Sequence record" | type:"any" seqoutset | "EDAM: Sequence record" | type:"gapany" seqoutset | "EDAM: Nucleotide sequence record" | type:"nucleotide" seqoutset | "EDAM: DNA sequence record" | type:"dna" seqoutset | "EDAM: RNA sequence record" | type:"rna" seqoutset | "EDAM: Protein sequence record" | type:"protein" seqoutset | "EDAM: Protein sequence record" | type:"proteinstandard" seqoutset | "EDAM: Nucleotide sequence record" | type:"purenucleotide" seqoutset | "EDAM: DNA sequence record" | type:"puredna" seqoutset | "EDAM: RNA sequence record" | type:"purerna" seqoutset | "EDAM: Protein sequence record" | type:"pureprotein" seqoutset | "EDAM: Nucleotide sequence record" | type:"gapnucleotide" seqoutset | "EDAM: Nucleotide sequence record" | type:"gapnucleotidephylo" seqoutset | "EDAM: DNA sequence record" | type:"gapdna" seqoutset | "EDAM: RNA sequence record" | type:"gaprna" seqoutset | "EDAM: DNA sequence record" | type:"gapdnaphylo" seqoutset | "EDAM: RNA sequence record" | type:"gaprnaphylo" seqoutset | "EDAM: Protein sequence record" | type:"gapprotein" seqoutset | "EDAM: Protein sequence record" | type:"gapproteinphylo" seqoutset | "EDAM: Protein sequence record" | type:"gapstopprotein" seqoutset | "EDAM: Protein sequence record" | type:"stopprotein" seqoutset | "EDAM: Protein sequence record" | type:"gapproteinstandard" seqoutset | "EDAM: Protein sequence record" | type:"stopproteinstandard" # seqset | "EDAM: Sequence record" | seqset | "EDAM: Sequence record" | type:"any" seqset | "EDAM: Sequence record" | type:"gapany" seqset | "EDAM: Nucleotide sequence record" | type:"nucleotide" seqset | "EDAM: DNA sequence record" | type:"dna" seqset | "EDAM: RNA sequence record" | type:"rna" seqset | "EDAM: Protein sequence record" | type:"protein" seqset | "EDAM: Protein sequence record" | type:"proteinstandard" seqset | "EDAM: Nucleotide sequence record" | type:"purenucleotide" seqset | "EDAM: DNA sequence record" | type:"puredna" seqset | "EDAM: RNA sequence record" | type:"purerna" seqset | "EDAM: Protein sequence record" | type:"pureprotein" seqset | "EDAM: Nucleotide sequence record" | type:"gapnucleotide" seqset | "EDAM: Nucleotide sequence record" | type:"gapnucleotidephylo" seqset | "EDAM: DNA sequence record" | type:"gapdna" seqset | "EDAM: RNA sequence record" | type:"gaprna" seqset | "EDAM: DNA sequence record" | type:"gapdnaphylo" seqset | "EDAM: RNA sequence record" | type:"gaprnaphylo" seqset | "EDAM: Protein sequence record" | type:"gapprotein" seqset | "EDAM: Protein sequence record" | type:"gapproteinphylo" seqset | "EDAM: Protein sequence record" | type:"gapstopprotein" seqset | "EDAM: Protein sequence record" | type:"stopprotein" seqset | "EDAM: Protein sequence record" | type:"gapproteinstandard" seqset | "EDAM: Protein sequence record" | type:"stopproteinstandard" seqset | "EDAM: Sequence alignment data" | aligned:"Y" # seqset | "EDAM: Sequence alignment data" | type:"any"; aligned:"Y" seqset | "EDAM: Sequence alignment data" | type:"gapany"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"nucleotide"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"dna"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"rna"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"protein"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"proteinstandard"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"purenucleotide"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"puredna"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"purerna"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"pureprotein"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"gapnucleotide"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"gapnucleotidephylo"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"gapdna"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"gaprna"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"gapdnaphylo"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"gaprnaphylo"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"gapprotein"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"gapproteinphylo"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"gapstopprotein"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"stopprotein"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"gapproteinstandard"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"stopproteinstandard"; aligned:"Y" seqset | "EDAM: Nucleotide sequence alignment data" | type:"nucleotide"; aligned:"Y" seqset | "EDAM: Protein sequence alignment data" | type:"protein"; aligned:"Y" seqset | "EDAM: Multiple sequence alignment data" | aligned:"Y"; minseqs:"3" seqset | "EDAM: Pairwise sequence alignment data" | aligned:"Y"; minseqs:"2"; maxseqs:"2" # seqset | "EDAM: Multiple sequence alignment data" | type:"any"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple sequence alignment data" | type:"gapany"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"nucleotide"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"dna"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"rna"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"protein"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"proteinstandard"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"purenucleotide"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"puredna"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"purerna"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"pureprotein"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"gapnucleotide"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"gapnucleotidephylo"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"gapdna"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"gaprna"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"gapdnaphylo"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple nucleotide sequence alignment data" | type:"gaprnaphylo"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"gapprotein"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"gapproteinphylo"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"gapstopprotein"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"stopprotein"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"gapproteinstandard"; aligned:"Y"; minseqs:"3" seqset | "EDAM: Multiple protein sequence alignment data" | type:"stopproteinstandard"; aligned:"Y"; minseqs:"3" # seqset | "EDAM: Pairwise sequence alignment data" | type:"any"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise sequence alignment data" | type:"gapany"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"nucleotide"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"dna"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"rna"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"protein"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"proteinstandard"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"purenucleotide"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"puredna"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"purerna"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"pureprotein"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"gapnucleotide"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"gapnucleotidephylo"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"gapdna"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"gaprna"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"gapdnaphylo"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise nucleotide sequence alignment data" | type:"gaprnaphylo"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"gapprotein"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"gapproteinphylo"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"gapstopprotein"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"stopprotein"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"gapproteinstandard"; aligned:"Y"; minseqs:"2"; maxseqs:"2" seqset | "EDAM: Pairwise protein sequence alignment data" | type:"stopproteinstandard"; aligned:"Y"; minseqs:"2"; maxseqs:"2" # seqsetall | "EDAM: Sequence record" | seqsetall | "EDAM: Sequence record" | type:"any" seqsetall | "EDAM: Sequence record" | type:"gapany" seqsetall | "EDAM: Nucleotide sequence record" | type:"nucleotide" seqsetall | "EDAM: DNA sequence record" | type:"dna" seqsetall | "EDAM: RNA sequence record" | type:"rna" seqsetall | "EDAM: Protein sequence record" | type:"protein" seqsetall | "EDAM: Protein sequence record" | type:"proteinstandard" seqsetall | "EDAM: Nucleotide sequence record" | type:"purenucleotide" seqsetall | "EDAM: DNA sequence record" | type:"puredna" seqsetall | "EDAM: RNA sequence record" | type:"purerna" seqsetall | "EDAM: Protein sequence record" | type:"pureprotein" seqsetall | "EDAM: Nucleotide sequence record" | type:"gapnucleotide" seqsetall | "EDAM: Nucleotide sequence record" | type:"gapnucleotidephylo" seqsetall | "EDAM: DNA sequence record" | type:"gapdna" seqsetall | "EDAM: RNA sequence record" | type:"gaprna" seqsetall | "EDAM: DNA sequence record" | type:"gapdnaphylo" seqsetall | "EDAM: RNA sequence record" | type:"gaprnaphylo" seqsetall | "EDAM: Protein sequence record" | type:"gapprotein" seqsetall | "EDAM: Protein sequence record" | type:"gapproteinphylo" seqsetall | "EDAM: Protein sequence record" | type:"gapstopprotein" seqsetall | "EDAM: Protein sequence record" | type:"stopprotein" seqsetall | "EDAM: Protein sequence record" | type:"gapproteinstandard" seqsetall | "EDAM: Protein sequence record" | type:"stopproteinstandard" # string | "EDAM: Generic string" | # toggle | "EDAM: Generic boolean" | # tree | "EDAM: PHYLIP phylogenetic tree report" | # xygraph | "EDAM: EMBOSS graph file" |