LOCUS NC_002516 7004 bp DNA circular BCT 13-FEB-2011 DEFINITION Pseudomonas aeruginosa PAO1 chromosome, complete genome. ACCESSION NC_002516 VERSION NC_002516.2 GI:110645304 DBLINK Project: 57945 KEYWORDS . SOURCE Pseudomonas aeruginosa PAO1 ORGANISM Pseudomonas aeruginosa PAO1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 7004) AUTHORS Winsor,G.L., Van Rossum,T., Lo,R., Khaira,B., Whiteside,M.D., Hancock,R.E. and Brinkman,F.S. TITLE Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes JOURNAL Nucleic Acids Res. 37 (DATABASE ISSUE), D483-D488 (2009) PUBMED 18978025 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AE004091. On Jul 24, 2006 this sequence version replaced gi:15595198. ----------------------------------------------------------------- This represents the Sept 08, 2010 version of the continually updated, reviewed, Pseudomonas aeruginosa PAO1 genome annotation from PseudoCap (see http://www.pseudomonas.com for the latest updates and links to alternate annotations). This update includes updated base pair coordinates and new features. PseudoCap is coordinated by Fiona S.L. Brinkman (Simon Fraser University, Canada) and Robert E.W. Hancock (University of British Columbia, Canada) with database development by Geoff Winsor (Simon Fraser University). We welcome submission through www.pseudomonas.com of any proposed changes. 'Protein name confidence' is used to rate our confidence of the accuracy of the protein name. Class 1: Function experimentally demonstrated in P. aeruginosa. Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. Class 4: Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. ------------------------------------------------------------------. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7004 /organism="Pseudomonas aeruginosa PAO1" /mol_type="genomic DNA" /strain="PAO1" /db_xref="taxon:208964" gene 483..2027 /gene="dnaA" /locus_tag="PA0001" /db_xref="GeneID:878417" CDS 483..2027 /gene="dnaA" /locus_tag="PA0001" /note="Product name confidence: Class 2 (High similarity to functionally studied protein)" /codon_start=1 /transl_table=11 /product="chromosomal replication initiation protein" /protein_id="NP_064721.1" /db_xref="GI:15595199" /db_xref="GeneID:878417" gene 2056..3159 /gene="dnaN" /locus_tag="PA0002" /db_xref="GeneID:879244" CDS 2056..3159 /gene="dnaN" /locus_tag="PA0002" /note="Product name confidence: Class 2 (High similarity to functionally studied protein)" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit beta" /protein_id="NP_064722.1" /db_xref="GI:15595200" /db_xref="GeneID:879244" gene 3169..4278 /gene="recF" /locus_tag="PA0003" /db_xref="GeneID:879229" CDS 3169..4278 /gene="recF" /locus_tag="PA0003" /note="Product name confidence: Class 2 (High similarity to functionally studied protein)" /codon_start=1 /transl_table=11 /product="recombination protein F" /protein_id="NP_064723.1" /db_xref="GI:15595201" /db_xref="GeneID:879229" gene 4275..6695 /gene="gyrB" /locus_tag="PA0004" /db_xref="GeneID:879230" CDS 4275..6695 /gene="gyrB" /locus_tag="PA0004" /note="Product name confidence: Class 2 (High similarity to functionally studied protein)" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="NP_064724.1" /db_xref="GI:15595202" /db_xref="GeneID:879230" ORIGIN 1 TTTAAAGAGA CCGGCGATTC TAGTGAAATC GAACGGGCAG GTCAATTTCC AACCAGCGAT 61 GACGTAATAG ATAGATACAA GGAAGTCATT TTTCTTTTAA AGGATAGAAA CGGTTAATGC 121 TCTTGGGACG GCGCTTTTCT GTGCATAACT CGATGAAGCC CAGCAATTGC GTGTTTCTCC 181 GGCAGGCAAA AGGTTGTCGA GAACCGGTGT CGAGGCTGTT TCCTTCCTGA GCGAAGCCTG 241 GGGATGAACG AGATGGTTAT CCACAGCGGT TTTTTCCACA CGGCTGTGCG CAGGGATGTA 301 CCCCCTTCAA AGCAAGGGTT ATCCACAAAG TCCAGGACGA CCGTCCGTCG GCCTGCCTGC 361 TTTTATTAAG GTCTTGATTT GCTTGGGGCC TCAGCGCATC GGCATGTGGA TAAGTCCGGC 421 CCGTCCGGCT ACAATAGGCG CTTATTTCGT TGTGCCGCCT TTCCAATCTT TGGGGGATAT 481 CCGTGTCCGT GGAACTTTGG CAGCAGTGCG TGGATCTTCT CCGCGATGAG CTGCCGTCCC 541 AACAATTCAA CACCTGGATC CGTCCCTTGC AGGTCGAAGC CGAAGGCGAC GAATTGCGTG 601 TGTATGCACC CAACCGTTTC GTCCTCGATT GGGTGAACGA GAAATACCTC GGTCGGCTTC 661 TGGAACTGCT CGGTGAACGC GGCGAGGGTC AGTTGCCCGC GCTTTCCTTA TTAATAGGCA 721 GCAAGCGTAG CCGTACGCCG CGCGCCGCCA TCGTCCCATC GCAGACCCAC GTGGCTCCCC 781 CGCCTCCGGT TGCTCCGCCG CCGGCGCCAG TGCAGCCGGT ATCGGCCGCG CCCGTGGTAG 841 TGCCACGTGA AGAGCTGCCG CCAGTGACGA CGGCTCCCAG CGTGTCGAGC GATCCCTACG 901 AGCCGGAAGA ACCCAGCATC GATCCGCTGG CCGCCGCCAT GCCGGCTGGA GCAGCGCCTG 961 CGGTGCGCAC CGAGCGCAAC GTCCAGGTCG AAGGTGCGCT GAAGCACACC AGCTATCTCA 1021 ACCGTACCTT CACCTTCGAG AACTTCGTCG AGGGCAAGTC CAACCAGTTG GCCCGCGCCG 1081 CCGCCTGGCA GGTGGCGGAC AACCTCAAGC ACGGCTACAA CCCGCTGTTC CTCTACGGTG 1141 GCGTCGGTCT GGGCAAGACC CACCTGATGC ATGCGGTGGG CAACCACCTG CTGAAGAAGA 1201 ACCCGAACGC CAAGGTGGTC TACCTGCATT CGGAACGTTT CGTCGCGGAC ATGGTGAAGG 1261 CCTTGCAGCT CAACGCCATC AACGAATTCA AGCGCTTCTA CCGCTCGGTG GACGCACTGT 1321 TGATCGACGA CATCCAGTTC TTCGCCCGTA AGGAGCGCTC CCAGGAGGAG TTCTTCCACA 1381 CCTTCAATGC CCTTCTCGAA GGCGGCCAGC AGGTGATCCT CACCAGCGAC CGCTATCCGA 1441 AGGAAATCGA AGGCCTGGAA GAGCGGCTGA AATCCCGCTT CGGCTGGGGC CTGACGGTGG 1501 CCGTCGAGCC GCCGGAACTG GAAACCCGGG TGGCGATCCT GATGAAGAAG GCCGAGCAGG 1561 CGAAGATCGA GCTGCCGCAC GATGCGGCCT TCTTCATCGC CCAGCGCATC CGTTCCAACG 1621 TGCGTGAACT GGAAGGTGCG CTGAAGCGGG TGATCGCCCA CTCGCACTTC ATGGGCCGGC 1681 CGATCACCAT CGAGCTGATT CGCGAGTCGC TGAAGGACCT GTTGGCCCTT CAGGACAAGC 1741 TGGTCAGCAT CGACAACATC CAGCGCACCG TCGCCGAGTA CTACAAGATC AAGATATCCG 1801 ATCTGTTGTC CAAGCGGCGT TCGCGCTCGG TGGCGCGCCC GCGCCAGGTG GCCATGGCGC 1861 TCTCCAAGGA GCTGACCAAC CACAGCCTGC CGGAGATCGG CGTGGCCTTC GGCGGTCGGG 1921 ATCACACCAC GGTGTTGCAC GCCTGTCGTA AGATCGCTCA ACTTAGGGAA TCCGACGCGG 1981 ATATCCGCGA GGACTACAAG AACCTGCTGC GTACCCTGAC AACCTGACGC AGCCCACGAG 2041 GCAAGGGACT AGACCATGCA TTTCACCATT CAACGCGAAG CCCTGTTGAA ACCGCTGCAA 2101 CTGGTCGCCG GCGTCGTGGA ACGCCGCCAG ACATTGCCGG TTCTCTCCAA CGTCCTGCTG 2161 GTGGTCGAAG GCCAGCAACT GTCGCTGACC GGCACCGACC TCGAAGTCGA GCTGGTTGGT 2221 CGCGTGGTAC TGGAAGATGC CGCCGAACCC GGCGAGATCA CCGTACCGGC GCGCAAGCTG 2281 ATGGACATCT GCAAGAGCCT GCCGAACGAC GTGCTGATCG ACATCCGTGT CGAAGAGCAG 2341 AAACTTCTGG TGAAGGCCGG GCGTAGCCGC TTCACCCTGT CCACCCTGCC GGCCAACGAT 2401 TTCCCCACCG TAGAGGAAGG TCCCGGCTCG CTGAACTTCA GCATTGCCCA GAGCAAGCTG 2461 CGTCGCCTGA TCGACCGCAC CAGCTTCGCC ATGGCCCAGC AGGACGTGCG TTACTACCTC 2521 AACGGCATGC TGCTGGAAGT GAACGGCGGC ACCCTGCGCT CCGTCGCCAC CGACGGCCAC 2581 CGACTGGCCA TGTGCTCGCT GGATGCGCAG ATCCCGTCGC AGGACCGCCA CCAGGTGATC 2641 GTGCCGCGCA AAGGCATCCT CGAACTGGCT CGTCTGCTCA CCGAGCAGGA CGGCGAAGTC 2701 GGCATCGTCC TGGGCCAGCA CCATATCCGT GCCACCACTG GCGAATTCAC CTTCACTTCG 2761 AAGCTGGTGG ACGGCAAGTT CCCGGACTAC GAGCGTGTAC TGCCGCGCGG TGGCGACAAG 2821 CTGGTGGTCG GTGACCGCCA GCAACTGCGC GAAGCCTTCA GCCGTACCGC GATCCTCTCC 2881 AACGAGAAGT ACCGCGGCAT TCGCCTGCAG CTTTCCAACG GTTTGCTGAA AATCCAGGCG 2941 AACAACCCGG AGCAGGAAGA GGCCGAGGAA GAAGTGCAGG TCGAGTACAA CGGCGGCAAC 3001 CTGGAGATAG GCTTCAACGT CAGTTACCTG CTCGACGTGC TGGGTGTGAT CGGTACCGAG 3061 CAGGTCCGCT TCATCCTTTC CGATTCCAAC AGCAGCGCCC TGGTCCACGA GGCCGACAAT 3121 GACGATTCTG CCTATGTCGT CATGCCGATG CGCCTCTAAA CATACTGAAT GTCCCTGACC 3181 CGCGTTTCGG TCACCGCGGT GCGCAACCTG CACCCGGTGA CCCTCTCCCC CTCCCCCCGC 3241 ATCAACATCC TCTACGGCGA CAACGGCAGC GGCAAGACCA GCGTGCTCGA AGCCATCCAC 3301 CTGCTGGGCC TGGCGCGTTC ATTCCGCAGT GCGCGCTTGC AGCCGGTGAT CCAGTATGAG 3361 GAAGCGGCCT GCACCGTATT CGGCCAGGTG ATGTTGGCCA ACGGCATCGC CAGCAACCTG 3421 GGGATTTCCC GTGAGCGCCA GGGCGAGTTC ACCATCCGCA TCGATGGGCA GAACGCCCGG 3481 AGTGCGGCTC AATTGGCGGA AACTCTCCCA CTGCAACTGA TCAACCCGGA CAGCTTTCGG 3541 TTGCTCGAGG GAGCGCCGAA GATCCGGCGA CAGTTCCTCG ATTGGGGAGT GTTCCACGTG 3601 GAACCTCGGT TTCTGCCCGT CTGGCAGCGC CTGCAGAAGG CGCTGCGCCA GCGGAACTCC 3661 TGGCTCCGGC ATGGTAAACT GGACCCCGCG TCGCAAGCGG CCTGGGACCG GGAATTGAGC 3721 CTGGCCAGCG ATGAGATCGA TGCCTACCGC AGAAGCTATA TCCAGGCGTT GAAACCGGTA 3781 TTCGAGGAAA CACTCGCCGA ATTGGTTTCA CTGGATGACC TGACCCTTAG CTACTACCGA 3841 GGCTGGGACA AGGACCGGGA CCTCCTGGAG GTTCTGGCTT CCAGCCTGTT GCGCGACCAG 3901 CAGATGGGCC ACACCCAGGC GGGACCGCAG CGTGCGGATC TTCGCATACG GTTGGCAGGT 3961 CATAACGCCG CGGAGATTCT CTCGCGCGGT CAGCAGAAGC TGGTGGTATG CGCCCTGCGC 4021 ATCGCCCAAG GCCATCTGAT CAATCGCGCC AAGCGCGGAC AGTGCGTCTA CCTGGTGGAC 4081 GACCTGCCCT CGGAACTGGA TGAGCAGCAT CGAATGGCTC TTTGCCGCTT GCTTGAAGAT 4141 TTGGGTTGCC AGGTATTCAT CACCTGCGTG GACCCGCAAC TATTGAAAGA CGGCTGGCGC 4201 ACGGATACGC CGGTATCCAT GTTCCACGTG GAACATGGAA AAGTCTCTCA GACCACGACC 4261 ATCGGGAGTG AAGCATGAGC GAGAACAACA CGTACGACTC TTCCAGCATC AAGGTGCTGA 4321 AGGGGCTGGA TGCCGTACGC AAGCGCCCCG GCATGTACAT CGGCGACACC GACGATGGCA 4381 CCGGTCTGCA CCACATGGTG TTCGAGGTGG TGGATAACTC CATCGACGAA GCGCTGGCCG 4441 GTTACTGCAG CGAAATCAGC ATCACCATCC ATACGGATGA GTCGATCACT GTCCGCGACA 4501 ATGGACGCGG TATTCCGGTG GATATCCACA AGGAAGAAGG GGTTTCTGCG GCGGAAGTGA 4561 TCATGACCGT CCTCCACGCC GGCGGCAAGT TCGACGACAA CACCTACAAG GTGTCCGGCG 4621 GCTTGCACGG TGTGGGCGTC TCGGTGGTGA ACGCGCTGTC CCATGAACTA CGCCTGACCA 4681 TCCGTCGCCA CAACAAGGTC TGGGAACAGG TCTACCACCA CGGCGTTCCG CAGTTCCCAC 4741 TGCGCGAAGT GGGCGAGACC GATGGCTCCG GCACCGAAGT TCACTTCAAG CCGTCCCCGG 4801 AGACCTTCAG CAACATCCAC TTCAGTTGGG ACATCCTGGC CAAGCGCATC CGCGAGCTGT 4861 CCTTCCTCAA CTCCGGCGTC GGCATCCTGC TGCGCGACGA GCGTACCGGC AAGGAGGAGC 4921 TGTTCAAGTA CGAAGGCGGT CTGAAGGCCT TCGTCGAGTA CCTGAACACC AACAAGACCG 4981 CGGTGAACGA GGTATTCCAC TTCAACGTCC AGCGTGAAGA GGACGGCGTG GGTGTGGAAG 5041 TCGCCTTGCA GTGGAACGAC AGCTTCAACG AGAACCTGCT CTGCTTCACC AACAACATCC 5101 CGCAGCGTGA CGGCGGCACC CACCTGGCCG GTTTCCGTTC GGCGCTGACG CGTAACCTGA 5161 ACAACTACAT CGAGGCCGAA GGCCTGGCGA AGAAGTTCAA GATCGCCACC ACCGGCGACG 5221 ATGCCCGCGA AGGCCTCACC GCGATCATCT CGGTGAAGGT ACCGGACCCG AAGTTCAGCT 5281 CGCAGACCAA GGACAAGCTG GTCTCCTCCG AGGTGAAGAC TGCGGTGGAA CAGGAGATGG 5341 GCAAGTACTT CGCCGACTTC CTGCTGGAGA ATCCCAACGA AGCCAAGGCC GTGGTCGGCA 5401 AGATGATCGA CGCCGCCCGT GCCCGCGAGG CCGCGCGCAA GGCGCGCGAG ATGACCCGCC 5461 GCAAGGGCGC GCTGGACATC GCCGGCCTGC CCGGCAAACT GGCCGATTGC CAGGAAAAGG 5521 ACCCGGCGCT CTCCGAACTG TACATCGTGG AGGGTGACTC CGCGGGCGGT TCCGCCAAGC 5581 AGGGCCGCAA TCGCCGGACC CAGGCGATCC TGCCGCTCAA GGGCAAGATC CTCAACGTCG 5641 AAAAGGCGCG CTTCGACAAG ATGCTCTCCT CCCAGGAGGT CGGTACGCTG ATCACCGCCC 5701 TGGGCTGTGG CATCGGCCGC GAGGAATACA ACATCGACAA GCTGCGCTAC CACAACATCA 5761 TCATCATGAC CGATGCTGAC GTCGACGGTT CGCACATCCG CACCCTGCTG TTGACCTTCT 5821 TCTTCCGCCA GATGCCCGAG CTGATCGAGC GTGGCTACAT CTACATCGCC CAGCCCCCGT 5881 TGTACAAGGT CAAGCGCGGC AAGCAGGAGC AGTACATCAA GGACGACCAG GCCATGGAAG 5941 AGTACATGAC CCAGTCGGCC CTGGAAGACG CCAGCCTGCA CGTCAACGAG CACGCTCCGG 6001 GCCTGTCCGG GGCGGCGCTG GAGAAACTGG TCAACGAGTA TCGCGGGGTG ATCGCCACCC 6061 TCAAGCGCCT GTCGCGCCTG TACCCCCAGG AGCTGACCGA GCACTTCATC TACCTGCCTA 6121 CCGTGTCGGT GGACGACCTG GCTAACGAGT CGGCCATGCA GGGCTGGTTG GAGAAGTTCC 6181 AGGCGCGCCT GACCGCCGCC GAGAAGTCCG GCCTGACCTA CAAGGCCAGC CTGCGCGAAG 6241 ACCGCGAGCG CCACCTGTGG CTGCCCGAGG TGGAACTGGT GGCCCACGGC CTGTCCAGCT 6301 ACGTCACCTT CAACCGTGAC TTCTTCGCCA GCAATGACTA CCGCTCGGTG TCGCTGCTCG 6361 GCGACCAGCT GAACAGCCTG CTGGAAGACG GCGCCTACGT GCAGAAGGGT GAGCGCAAGC 6421 GCCCGATCAG CGCCTTCAAG GACGGCCTGG ACTGGCTGAT GGCCGAAGGT ACCAAGCGCC 6481 ACAGCATCCA GCGATACAAG GGGCTGGGCG AGATGAACCC TGAGCAGCTG TGGGAAACCA 6541 CCATGGATCC GAACGTCCGG CGCATGCTCA AGGTGACCAT CGAGGATGCC ATCGCCGCCG 6601 ACCAGATCTT CAACACCCTG ATGGGCGATG CCGTGGAGCC GCGCCGCGAC TTCATCGAAA 6661 GCAACGCGCT GGCGGTGTCG AACCTGGACG TGTGACAGGT CGGCAGACCG ACCCTCATGG 6721 AAACCCCGGC CTGGCGCCGG GGTTTTCTTT TTGCGCCAGG TAGCCTGGAT ACGGGCGCCA 6781 GGGGTGCCTT GCCAAGGTGT GGCCGAGCCC CGGTTACTCG CCGGCATTGG CACCCTGGAC 6841 CCGGGCCTCC TGGCGGCGTG GCACCGCTTC TGTGGGCAGC GGTCGCCGGT CGGTTCGGTC 6901 GATCGTTGCC AGCCGGCCTT GCTTTGCGCC TCGCGTGAAA ACAAGAAGCC CCGCTATGGC 6961 GGGGCTTCTT TTATCGAATC GGCGCACAGT ACGCCTTGCA GGGG //