# # Output from 'compseq' # # The Expected frequencies are calculated on the (false) assumption that every # word has equal frequency. # # The input sequences are: # HSFAU Word size 3 Total count 516 # # Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency # AAA 17 0.0329457 0.0156250 2.1085271 AAC 5 0.0096899 0.0156250 0.6201550 AAG 18 0.0348837 0.0156250 2.2325581 AAT 4 0.0077519 0.0156250 0.4961240 ACA 5 0.0096899 0.0156250 0.6201550 ACC 6 0.0116279 0.0156250 0.7441860 ACG 2 0.0038760 0.0156250 0.2480620 ACT 7 0.0135659 0.0156250 0.8682171 AGA 12 0.0232558 0.0156250 1.4883721 AGC 7 0.0135659 0.0156250 0.8682171 AGG 16 0.0310078 0.0156250 1.9844961 AGT 10 0.0193798 0.0156250 1.2403101 ATA 2 0.0038760 0.0156250 0.2480620 ATC 3 0.0058140 0.0156250 0.3720930 ATG 7 0.0135659 0.0156250 0.8682171 ATT 2 0.0038760 0.0156250 0.2480620 CAA 10 0.0193798 0.0156250 1.2403101 CAC 6 0.0116279 0.0156250 0.7441860 CAG 13 0.0251938 0.0156250 1.6124031 CAT 5 0.0096899 0.0156250 0.6201550 CCA 12 0.0232558 0.0156250 1.4883721 CCC 13 0.0251938 0.0156250 1.6124031 CCG 8 0.0155039 0.0156250 0.9922481 CCT 10 0.0193798 0.0156250 1.2403101 CGA 2 0.0038760 0.0156250 0.2480620 CGC 10 0.0193798 0.0156250 1.2403101 CGG 9 0.0174419 0.0156250 1.1162791 CGT 4 0.0077519 0.0156250 0.4961240 CTA 5 0.0096899 0.0156250 0.6201550 CTC 11 0.0213178 0.0156250 1.3643411 CTG 10 0.0193798 0.0156250 1.2403101 CTT 11 0.0213178 0.0156250 1.3643411 GAA 11 0.0213178 0.0156250 1.3643411 GAC 6 0.0116279 0.0156250 0.7441860 GAG 10 0.0193798 0.0156250 1.2403101 GAT 4 0.0077519 0.0156250 0.4961240 GCA 7 0.0135659 0.0156250 0.8682171 GCC 18 0.0348837 0.0156250 2.2325581 GCG 8 0.0155039 0.0156250 0.9922481 GCT 10 0.0193798 0.0156250 1.2403101 GGA 13 0.0251938 0.0156250 1.6124031 GGC 17 0.0329457 0.0156250 2.1085271 GGG 7 0.0135659 0.0156250 0.8682171 GGT 9 0.0174419 0.0156250 1.1162791 GTA 6 0.0116279 0.0156250 0.7441860 GTC 9 0.0174419 0.0156250 1.1162791 GTG 8 0.0155039 0.0156250 0.9922481 GTT 5 0.0096899 0.0156250 0.6201550 TAA 7 0.0135659 0.0156250 0.8682171 TAC 3 0.0058140 0.0156250 0.3720930 TAG 4 0.0077519 0.0156250 0.4961240 TAT 1 0.0019380 0.0156250 0.1240310 TCA 10 0.0193798 0.0156250 1.2403101 TCC 6 0.0116279 0.0156250 0.7441860 TCG 7 0.0135659 0.0156250 0.8682171 TCT 10 0.0193798 0.0156250 1.2403101 TGA 4 0.0077519 0.0156250 0.4961240 TGC 9 0.0174419 0.0156250 1.1162791 TGG 14 0.0271318 0.0156250 1.7364341 TGT 5 0.0096899 0.0156250 0.6201550 TTA 2 0.0038760 0.0156250 0.2480620 TTC 10 0.0193798 0.0156250 1.2403101 TTG 7 0.0135659 0.0156250 0.8682171 TTT 7 0.0135659 0.0156250 0.8682171 Other 0 0.0000000 0.0000000 10000000000.0000000