>>>>LLIS904 9/1993 X52273 Lactococcus lactis insertion element iso-IS904 coding for a transposase. 9/1993 LOCUS LLIS904 1245 bp DNA linear BCT 12-SEP-1993 DEFINITION Lactococcus lactis insertion element iso-IS904 coding for a transposase. ACCESSION X52273 VERSION X52273.1 GI:44028 KEYWORDS insertion element; insertion element iso-IS904; transposon. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 1245) AUTHORS Rauch,P.J.G. TITLE Direct Submission JOURNAL Submitted (11-APR-1990) Rauch P.J.G., Netherlands Institute for Dairy Research, P O Box 20, 6710 BA EDE, The Netherlands REFERENCE 2 (bases 1 to 1245) AUTHORS Rauch,P.J., Beerthuyzen,M.M. and de Vos,W.M. TITLE Nucleotide sequence of IS904 from Lactococcus lactis subsp. lactis strain NIZO R5 JOURNAL Nucleic Acids Res. 18 (14), 4253-4254 (1990) MEDLINE 90332428 FEATURES Location/Qualifiers source 1. .1245 /organism="Lactococcus lactis" /strain="lactis NIZO R5." /db_xref="taxon:1358" repeat_unit 1. .39 /note="imperfect inverted repeat A" promoter 265. .270 /note="put. -35 region (1)" promoter 286. .291 /note="put. -10 region (1)" misc_feature 289. .336 /note="dyad symmetry region" promoter 302. .307 /note="put. -35 region (2)" promoter 326. .331 /note="put. -10 region (2)" CDS 444. .1205 /note="put. transposase (AA 1-253)" /codon_start=1 /transl_table=11 /protein_id="CAA36516.1" /db_xref="GI:44029" /db_xref="SPTREMBL:Q48648" /translation="MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGI MTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGSSLSRPNLINQIFKATAPNKVWLGDM TYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDYFLQACGKEHPQPGLIVHT DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAE ATQEIFKYIETYYNTKRMHSGLDYKSPKDFEKYNS" repeat_unit 1207. .1245 /note="imperfect inverted repeat A'" BASE COUNT 426 a 213 c 255 g 351 t ORIGIN >>>>LLISS1 6/1992 X62737 L.lactis plasmid pTD1 insertion sequence ISS1. 6/1992 LOCUS LLISS1 808 bp DNA linear BCT 05-JUN-1992 DEFINITION L.lactis plasmid pTD1 insertion sequence ISS1. ACCESSION X62737 VERSION X62737.1 GI:44030 KEYWORDS insertion sequence; insertion sequence ISS1; transposase. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 808) AUTHORS Schaefer,A., Jahns,A., Geis,A. and Teuber,M. TITLE Distribution of the IS elements ISS1 and IS904 in lactococci JOURNAL FEMS Microbiol. Lett. 80, 311-318 (1991) REFERENCE 2 (bases 1 to 808) AUTHORS Schaefer,A. TITLE Direct Submission JOURNAL Submitted (13-JAN-1992) Schaefer A., Institut fuer Mikrobiologie, Bundesanstalt fuer Milchforschung, D-2300 Kiel, FRG COMMENT See also M18290-4 & M37395-6. FEATURES Location/Qualifiers source 1. .808 /organism="Lactococcus lactis" /plasmid="pTD1" /strain="W67" /db_xref="taxon:1358" /insertion_seq="ISS1" repeat_region 1. .17 /rpt_type=INVERTED -35_signal 8. .13 -10_signal 30. .35 RBS 61. .66 CDS 74. .754 /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="CAA44601.1" /db_xref="GI:44031" /db_xref="SPTREMBL:Q04224" /translation="MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCH TTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDI WLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVK YLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIYKKNRRNGTLFGFSVSTEI KVLMGITA" repeat_region 791. .808 /rpt_type=INVERTED BASE COUNT 277 a 141 c 165 g 225 t ORIGIN >>>>LLISS1T 12/1992 Z14022 L.lactis insertion sequence ISS1T. 12/1992 LOCUS LLISS1T 1108 bp DNA linear BCT 15-DEC-1992 DEFINITION L.lactis insertion sequence ISS1T. ACCESSION Z14022 VERSION Z14022.1 GI:44032 KEYWORDS insertion sequence; insertion sequence ISS1T. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 86 to 134; 849 to 891) AUTHORS Gasson,M.J. and Swindell,S.R. TITLE Molecular rearrangement of lactose plasmid DNA associated with high frequency aggregation in Lactococcus lactis 712 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1056) AUTHORS Swindell,S.R. TITLE Direct Submission JOURNAL Submitted (08-JUL-1992) S.R. Swindell, Genetics & Microbiology, Institute of Food Research, Norwich Research Park, Norwich, Norfolk, NR4 7UA, ENGLAND FEATURES Location/Qualifiers source 1. .1108 /organism="Lactococcus lactis" /strain="Lactococcus lactis 712" /db_xref="taxon:1358" /clone="pFI341" source 111. .867 /organism="Lactococcus lactis" /insertion_seq="" /db_xref="taxon:1358" BASE COUNT 381 a 187 c 204 g 336 t ORIGIN >>>>LLISTRA 11/1993 X60594 L.lactis insertion sequence (plasmid pUCL22) gene for transposase. 11/1993 LOCUS LLISTRA 934 bp DNA linear BCT 22-NOV-1993 DEFINITION L.lactis insertion sequence (plasmid pUCL22) gene for transposase. ACCESSION X60594 S43267 VERSION X60594.1 GI:44033 KEYWORDS insertion sequence; transposase. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 934) AUTHORS Huang,D.C. TITLE Direct Submission JOURNAL Submitted (07-AUG-1991) D.C. Huang, Lab de Genetique Microbienne, Universite' de Caen, Esplanade de la Paix 14032, Caen Cedex, FRANCE REFERENCE 2 (bases 1 to 934) AUTHORS Huang,D.C., Novel,M., Huang,X.F. and Novel,G. TITLE Nonidentity between plasmid and chromosomal copies of ISS1-like sequences in Lactococcus lactis subsp. lactis CNRZ270 and their possible role in chromosomal integration of plasmid genes JOURNAL Gene 118 (1), 39-46 (1992) MEDLINE 92380489 FEATURES Location/Qualifiers source 1. .934 /organism="Lactococcus lactis" /plasmid="" /strain="Z270" /db_xref="taxon:1358" /clone="D472" source 61. .868 /organism="Lactococcus lactis" /insertion_seq="" /db_xref="taxon:1358" -35_signal 68. .73 -10_signal 90. .95 RBS 121. .126 CDS 134. .814 /note="orf1" /codon_start=1 /transl_table=11 /protein_id="CAA43047.1" /db_xref="GI:44034" /db_xref="SPTREMBL:Q48649" /translation="MNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCH TTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDI WLRKKRNTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVK YLNNLIEQDHRPIKRRNKFYRSLQTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEI KVLMGILA" CDS complement(209. .394) /note="orf3" /codon_start=1 /transl_table=11 /protein_id="CAA43049.1" /db_xref="GI:44036" /db_xref="SPTREMBL:Q48651" /translation="MPTTFDFDISFIHFPRIEGLSIFLFPEMIEDFTVFLYPTINSCV TNINSTIIKEFLNFTIA" CDS 240. .428 /note="orf2" /codon_start=1 /transl_table=11 /protein_id="CAA43048.1" /db_xref="GI:44035" /db_xref="SPTREMBL:Q48650" /translation="MIVELMFVTQLFIVGYKNTVKSSIISGKRKIDSPSIRGKWMKLI SKSKVVGIISIVQLMRMD" CDS complement(508. .630) /note="orf4" /codon_start=1 /transl_table=11 /protein_id="CAA43050.1" /db_xref="GI:44037" /db_xref="SPTREMBL:Q48652" /translation="MRLLRYFTVRCSVLVYKPLLCNFLNAEPIEGALSVTITLG" BASE COUNT 340 a 150 c 174 g 270 t ORIGIN >>>>LLJ000883 11/1998 AJ000883 Lactococcus lactis lactis purDEK operon. 11/1998 LOCUS LLJ000883 3573 bp DNA linear BCT 17-NOV-1998 DEFINITION Lactococcus lactis lactis purDEK operon. ACCESSION AJ000883 VERSION AJ000883.1 GI:3892881 KEYWORDS purDEK operon. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 3573) AUTHORS Nilsson,D. and Kilstrup,M. TITLE Cloning and expression of the Lactococcus lactis purDEK genes, required for growth in milk JOURNAL Appl. Environ. Microbiol. 64 (11), 4321-4327 (1998) MEDLINE 99013630 REFERENCE 2 (bases 1 to 3573) AUTHORS Nilsson,D. TITLE Direct Submission JOURNAL Submitted (27-JAN-1998) Nilsson D., Department of Physiology and Metabolism, Chr. Hansen A/S, Boege Alle 10-12,, DK-2970 Hoersholm, DENMARK FEATURES Location/Qualifiers source 1. .3573 /organism="Lactococcus lactis" /strain="CHCC373" /sub_species="lactis" /db_xref="taxon:1358" CDS complement(<1. .364) /note="orf1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CAA04373.1" /db_xref="GI:3892882" /translation="MATQPTKDKIISSSWELLEELTLTEFSMRKLASAVGMTVSSLYY HFSSKEALFAELIDKASLEIIFPANEKTWQDRLFVYGKNIYTVLESYPNLAQLMMDYP PESENYLRLFDKLLMIVDD" gene join(563. .568,575. .3573) /gene="purDEK" -10_signal 563. .568 /gene="purDEK" /citation=[1] prim_transcript 575. .>3573 /gene="purDEK" /citation=[1] /evidence=experimental gene 711. .715 /gene="purD" RBS 711. .715 /gene="purD" /citation=[1] gene 720. .1958 /gene="purD" CDS 720. .1958 /gene="purD" /codon_start=1 /transl_table=11 /protein_id="CAA04374.1" /db_xref="GI:3892883" /translation="MKILVIGSGGREHALAKKFMESPQVEEVFVAPGNSGMEKDGIQI VHISELSNDKLVKFAQNQNIGLTFVGPETALMNGVVDAFIKAELPIFGPNKMAAELEG SKDFAKSIMKKYGVPTADYATFDSLEPALAYLDEKGVPLVIKADGLAAGKGVTVAFDI ETAKSALADIFSGSQGKVVIEEFLDGEEFSLFSFIHDGKIYPMPIAQDHKRAFDEDKG PNTGGMGAYSPVLHISKEVVNEALEKVVKPTVAGMIEEGKSFTGVLYAGLILTEDGVK TIEFNARFGDPETQVVLPRLKSDLAQAIIDILAGNEPTLEWLESGVTLGVVVAAEGYP SQAKLGLILPEIPEGLNVYYAGVSKNENNQLISSGGRVYLVSETGEDVKSTQKLLYEK LDKLENDGFFYRHDIGSRAI" gene 1982. .1986 /gene="purE" RBS 1982. .1986 /gene="purE" /citation=[1] gene 1991. .2476 /gene="purE" CDS 1991. .2476 /gene="purE" /codon_start=1 /transl_table=11 /protein_id="CAA04375.1" /db_xref="GI:3892884" /translation="MAEVAIIMGCSSDWATMKETAKILDDFGLAYEKKVVSAHRTPAL MAEFSSQARERGYKVIIAGAGGAAHLPGMVSAQTLVPVIGVPIKSRALSGLDSLYSIV QMPAGVPVATMAIGEAGAKNAALFALQLLANTNENLIQKLLVYRAAAQEMVEESNKAL L" gene 2518. .2522 /gene="purK" RBS 2518. .2522 /gene="purK" /citation=[1] gene 2527. .3573 /gene="purK" CDS 2527. .>3573 /gene="purK" /codon_start=1 /transl_table=11 /protein_id="CAA04376.1" /db_xref="GI:3892885" /translation="MIKNTKQTIGIIGGGQLGQMMAIAAQYMGHKVITLDPNPNCSAA KVSDELIVAPYDDVENLLRLAYACDVITYEFENVSAKALHEIEGCVRIPQGIRLLEIT QNRRFEKEFLTNEAKVNVAPWQLVDSAEKLPETVTRKQVLKTTTGGYDGHGQVVLNTD EKLSAAKSLTELSECVLEDFISFEREISVIISGNGHEYVVFPLAENEHRENILHQTIS PARISAEITENAYKIATSIAEKLELSGVLCVEMFLTADGQIYVNELAPRPHNSGHFTI EACDFNQFDLHIKGILGEDLPEPKLLKPAIMLNVLGQHVEAVKKLNHEHADWHQHDYG KADAKHNRKMGHVTI" BASE COUNT 1172 a 569 c 753 g 1079 t ORIGIN >>>>LLJ002203 8/2000 AJ002203 Lactococcus lactis subsp. lactis plasmid pBL1 DNA for lactococcin 972 operon. 8/2000 LOCUS LLJ002203 2455 bp DNA linear BCT 18-AUG-2000 DEFINITION Lactococcus lactis subsp. lactis plasmid pBL1 DNA for lactococcin 972 operon. ACCESSION AJ002203 VERSION AJ002203.2 GI:9795227 KEYWORDS lactococcin 972; lcn972; operon. SOURCE Lactococcus lactis subsp. lactis. ORGANISM Lactococcus lactis subsp. lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 2455) AUTHORS Martinez,B., Fernandez,M., Suarez,J.E. and Rodriguez,A. TITLE Synthesis of lactococcin 972, a bacteriocin produced by Lactococcus lactis IPLA 972, depends on the expression of a plasmid-encoded bicistronic operon JOURNAL Microbiology 145 (Pt 11), 3155-3161 (1999) MEDLINE 20055640 REFERENCE 2 (bases 1 to 2455) AUTHORS Suarez,J.E. TITLE Direct Submission JOURNAL Submitted (26-JAN-1998) Suarez J.E., Microbiologia, Universidad de Oviedo, Julian Claveria sn, 33006 Oviedo, SPAIN REMARK Revised by [3] REFERENCE 3 (bases 1 to 2455) AUTHORS Martinez,B. TITLE Direct Submission JOURNAL Submitted (07-AUG-2000) Martinez B.,Instituto de Productos Lacteos de Asturias, CSIC Apdo. 85, 33300 Villaviciosa, SPAIN COMMENT On Aug 11, 2000 this sequence version replaced gi:3355781. Related sequence AF242367. FEATURES Location/Qualifiers source 1. .2455 /organism="Lactococcus lactis subsp. lactis" /plasmid="pBL1" /strain="IPLA 972" /sub_species="lactis" /db_xref="taxon:1360" -35_signal 57. .62 /gene="lcn972" /evidence=experimental gene 57. .2455 /gene="lcn972" -10_signal 80. .85 /gene="lcn972" /evidence=experimental prim_transcript 93. .456 /gene="lcn972" /evidence=experimental prim_transcript 93. .2455 /gene="lcn972" /note="ORF2" /evidence=experimental stem_loop 126. .150 /gene="lcn972" RBS 166. .171 /gene="lcn972" CDS 178. .453 /gene="lcn972" /function="bacteriocin" /codon_start=1 /transl_table=11 /evidence=experimental /product="lactococcin 972" /protein_id="CAA05247.1" /db_xref="GI:3355782" /db_xref="SPTREMBL:O86283" /translation="MKTKSLVLALSAVTLFSAGGIVAQAEGTWQHGYGVSSAYSNYHH GSKTHSATVVNNNTGRQGKDTQRAGVWAKATVGRNLTEKASFYYNFW" sig_peptide 178. .252 /gene="lcn972" mat_peptide 253. .450 /gene="lcn972" /function="bacteriocin" /product="lactococcin 972" terminator 456. .493 /gene="lcn972" /evidence=experimental RBS 498. .503 /gene="lcn972" /note="ORF2" CDS 509. .2455 /gene="lcn972" /function="putative immunity" /note="ORF2" /codon_start=1 /transl_table=11 /protein_id="CAC03468.1" /db_xref="GI:9795228" /translation="MYKKLERVLITLSIVLVSAFSMIIVINKHKQMFAGTNGGVLVLK AKSNIKESIAEIAKKNNVLIAKQIMVPSTDGKTDNQPTFQKFGNGTLPKDFPEQKNKE FIEDSNDSVYYFIFGKTLSSIDLSKYLNEKGNTSMVSDNDWRFQGITALLDTRMIVGL LLFLISYTSILMANIIINLKKQGVQRLAGISCFRLSFLGLKKRLTYIFITTIITLLTS SLILYIINLRRIMYFYVIIFPTIFIVLVLLLIELIVGILVYLFLQRQKINLVIKDMAP IRALMSFVFLLQLISLLCLIFSFSSISSSHKDLVLLKKATNKWKSQDYYSPSLLNGNT EKSKENVLRFLSEANQKEEVLIIADNFNKYPLQNQYFPTSNGNENILYVTPNYLKKVG IKFNNTMKSDITILVPETEKSRKNKLSTLWSQAFNSLNETSFSYNSSVYKSPSKDLFT FRIFGWSAVDNQAFVQEPLIVVMSPKLFNINNKNINSDVLFSWFSREQILFSNNKTTA DLIKKYRLENVLGSFSNGNLSVKNRFVEIKSQQLFIVVTSSIALISSTFLFYLMNKIY LYQNRKKFAVARISGESLFTTHKTYLIQLFIIIIFAIGMIFIWHLNPLTLIIPPILGG LQLILLTRQIKNNKTFNISVLKGE" BASE COUNT 890 a 354 c 350 g 861 t ORIGIN >>>>LLJW563RP 11/1995 X85168 L.lactis plasmid pJW563 repB and ORFX genes. 11/1995 LOCUS LLJW563RP 2297 bp DNA linear BCT 10-NOV-1995 DEFINITION L.lactis plasmid pJW563 repB and ORFX genes. ACCESSION X85168 VERSION X85168.1 GI:728598 KEYWORDS orfX gene; repB gene. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 2297) AUTHORS Gravesen,A., Josephsen,J., von Wright,A. and Vogensen,F.K. TITLE Characterization of the replicon from the lactococcal theta-replicating plasmid pJW563 JOURNAL Plasmid 34 (2), 105-118 (1995) MEDLINE 96117602 REFERENCE 2 (bases 1 to 2297) AUTHORS Gravesen,A.L. TITLE Direct Submission JOURNAL Submitted (07-MAR-1995) A.L. Gravesen, The Royal Veterinary & Agric. Univ., Dept of Dairy & Food Science, Rolighedsvej 30, 1958 Frederiksberg C, DENMARK FEATURES Location/Qualifiers source 1. .2297 /organism="Lactococcus lactis" /plasmid="pJW563" /sub_species="cremoris" /db_xref="taxon:1358" /clone_lib="pAG34,35,36,37,38,39,40,41,43" repeat_region 178. .199 /note="DRI" /rpt_type=DIRECT repeat_region 257. .337 /note="DRII" /rpt_type=DIRECT repeat_region 328. .354 /note="IR1" /rpt_type=INVERTED -35_signal 343. .347 -10_signal 365. .370 repeat_region 373. .414 /note="IR2" /rpt_type=INVERTED gene join(431. .436,446. .1603) /gene="repB" RBS 431. .436 /gene="repB" CDS 446. .1603 /gene="repB" /codon_start=1 /transl_table=11 /protein_id="CAA59451.1" /db_xref="GI:728599" /db_xref="SPTREMBL:Q48654" /translation="MEIITKNDRNSNERTVCSLKEIEKRKIVEHNDLITSVAKMDKTP LKIFELAVSCIDTENLPKDNIIYLSKKELFTFFDVSDNGKHTRFKEAVEKMQKQAFFE IKEVKGKGYKVKSIVPIPYVEWNSYNDVVTLQFQPQIMPYLIELKKNFTKYALSDIMR LNSKYSIILYKWLCMFYNQYEHYSVKGGRRAEQVETYRNPSIKISELRSLTDTINEYK DMSNFTKRVLDNSLKEINHHTSFNVTYDKIKKGRSIDSIVFHIEKKRMADDNSYKLDD RAYQEDKARKAETEDKLAIEAMKSKYTTLLLENMLLSPFEMQDTKIMAGLQAHVYPLY DELKALRGLKGVKEHLSYVAAKQEAYSKRNVAKYLKKAIEQYLPTVKRQDL" gene 1600. .2193 /gene="ORFX" CDS 1600. .2193 /gene="ORFX" /codon_start=1 /transl_table=11 /protein_id="CAA59452.1" /db_xref="GI:728600" /db_xref="SPTREMBL:Q48655" /translation="MMSEKLKTIKELADEFNVSKQAVRKRLTEEFRANHVETVTSNGV KTLVVTYTGYMLLKQHFTTSNATSNDKVTDTSNPTNADLSVVKILEQQLFVKDKQLEN KDSQISQMQNLLDQQQRLALQDKKLIEEYKSEINELRALKMPQEDMKDGSPIRGEAQE EIERLKAQLKLSEEERNKEKEKDRVKTESKKWWQLWK" BASE COUNT 901 a 352 c 441 g 603 t ORIGIN >>>>LLL216SRR 5/1998 X97364 L.lyticum 16S rRNA gene, strain L2. 5/1998 LOCUS LLL216SRR 1481 bp DNA linear BCT 06-MAY-1998 DEFINITION L.lyticum 16S rRNA gene, strain L2. ACCESSION X97364 VERSION X97364.1 GI:1310678 KEYWORDS 16S ribosomal RNA; 16S rRNA. SOURCE Legionella lytica. ORGANISM Legionella lytica Bacteria; Proteobacteria; gamma subdivision; Legionellaceae group; Legionellaceae; Legionella. REFERENCE 1 (bases 1 to 1481) AUTHORS Birtles,R.J., Rowbotham,T.J., Raoult,D. and Harrison,T.G. TITLE Phylogenetic diversity of intra-amoebal legionellae as revealed by 16S rRNA gene sequence comparison JOURNAL Microbiology 142 (Pt 12), 3525-3530 (1996) MEDLINE 97158243 REFERENCE 2 (bases 1 to 1481) AUTHORS Birtles,R.J. TITLE Direct Submission JOURNAL Submitted (19-APR-1996) R.J. Birtles, UNITE DES RICKETTSIES, CNRS EP J0054, Fac. de Medicine, 27, bd Jean Moulin, F-13385 Marseille Cedex 5, FRANCE FEATURES Location/Qualifiers source 1. .1481 /organism="Legionella lytica" /strain="L2" /db_xref="taxon:96232" rRNA 1. .1481 /gene="16S rRNA" /product="16S ribosomal RNA" gene 1. .1481 /gene="16S rRNA" BASE COUNT 394 a 317 c 468 g 302 t ORIGIN >>>>LLL5SRA 2/1999 D90253 Leptonema illini 5S ribosomal RNA gene A. 2/1999 LOCUS LLL5SRA 550 bp DNA linear BCT 07-FEB-1999 DEFINITION Leptonema illini 5S ribosomal RNA gene A. ACCESSION D90253 VERSION D90253.1 GI:216766 KEYWORDS 5S ribosomal RNA. SOURCE Leptonema illini (strain:3055) DNA. ORGANISM Leptonema illini Bacteria; Spirochaetales; Leptospiraceae; Leptonema. REFERENCE 1 (bases 1 to 550) AUTHORS Fukunaga,M., Horie,I., Mifuchi,I. and Takemoto,M. TITLE Cloning, characterization and taxonomic significance of genes for the 5S ribosomal RNA of Leptonema illini strain 3055 JOURNAL J. Gen. Microbiol. 137 (Pt 7), 1523-1528 (1991) MEDLINE 92065221 COMMENT These data kindly submitted in computer readable form by: Masahito Fukunaga Faculty of Pharmacy and Pharmaceutical Sciences Fukuyama University 985 Higashimura-cho, Fukuyama Hiroshima 729-02 Japan Phone: 0849-36-2111 x5216 Fax: 0849-36-2213. FEATURES Location/Qualifiers source 1. .550 /organism="Leptonema illini" /strain="3055" /db_xref="taxon:183" -35_signal 216. .221 -10_signal 239. .243 rRNA 251. .357 /note="5S ribosomal RNA gene A" BASE COUNT 125 a 148 c 127 g 150 t ORIGIN 28 bp upstream of PvuII site. >>>>LLL5SRB 2/1999 D90254 Leptonema illini 5S ribosomal RNA gene B. 2/1999 LOCUS LLL5SRB 550 bp DNA linear BCT 07-FEB-1999 DEFINITION Leptonema illini 5S ribosomal RNA gene B. ACCESSION D90254 VERSION D90254.1 GI:216767 KEYWORDS 5S ribosomal RNA. SOURCE Leptonema illini (strain:3055) DNA. ORGANISM Leptonema illini Bacteria; Spirochaetales; Leptospiraceae; Leptonema. REFERENCE 1 (bases 1 to 550) AUTHORS Fukunaga,M., Horie,I., Mifuchi,I. and Takemoto,M. TITLE Cloning, characterization and taxonomic significance of genes for the 5S ribosomal RNA of Leptonema illini strain 3055 JOURNAL J. Gen. Microbiol. 137 (Pt 7), 1523-1528 (1991) MEDLINE 92065221 COMMENT These data kindly submitted in computer readable form by: Masahito Fukunaga Faculty of Pharmacy and Pharmaceutical Sciences Fukuyama University 985 Higashimura-cho, Fukuyama Hiroshima 729-02 Japan Phone: 0849-36-2111 x5216 Fax: 0849-36-2213. FEATURES Location/Qualifiers source 1. .550 /organism="Leptonema illini" /strain="3055" /db_xref="taxon:183" -35_signal 216. .221 -10_signal 239. .243 rRNA 251. .357 /note="5S ribosomal RNA gene B" BASE COUNT 123 a 145 c 117 g 165 t ORIGIN 38 bp upstream of StuI site. >>>>LLLACA 4/1996 X81358 L.lactis lacA gene. 4/1996 LOCUS LLLACA 784 bp DNA linear BCT 15-APR-1996 DEFINITION L.lactis lacA gene. ACCESSION X81358 VERSION X81358.1 GI:1263134 KEYWORDS galactoside O-acetyltransferase; lacA gene. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 784) AUTHORS Griffin,H.G. and Gasson,M.J. TITLE The gene (1acA) encoding galactoside acetyltransferase from Lactococcus lactis JOURNAL Biotechnol. Lett. 16, 1125-1130 (1994) REFERENCE 2 (bases 1 to 784) AUTHORS Griffin,H.G. TITLE Direct Submission JOURNAL Submitted (02-SEP-1994) H.G. Griffin, Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, UK COMMENT Related sequence: X80037. FEATURES Location/Qualifiers source 1. .784 /organism="Lactococcus lactis" /strain="ATCC7962" /db_xref="taxon:1358" RBS 10. .16 gene 25. .648 /gene="lacA" CDS 25. .648 /gene="lacA" /EC_number="2.3.1.18" /codon_start=1 /transl_table=11 /product="galactoside O-acetyltransferase" /protein_id="CAA57126.1" /db_xref="GI:1263135" /db_xref="SWISS-PROT:P52984" /translation="MPKLESYKRVHTEELYFPNDQKLWKEQQEALVLLEKFNQTSVTQ PEQQMELLKKMFSEIGENCFIQPPFYANFGGKNVHFGTGIYANFNLTLVDDTDIFVGN HVMFGPNVTIDTATHPVSPDLRKRGAQYNKKVYIEENVWLGAGVIVLPGVRIGKNSVI GAGSLVTKDIPDNVVAFGTPCMVKRKINDSDFKTYDHGKKIDLDEFI" BASE COUNT 273 a 109 c 163 g 239 t ORIGIN >>>>LLLACZ 10/1996 X80037 Lactococcus lactis lacZ gene. 10/1996 LOCUS LLLACZ 3071 bp DNA linear BCT 07-OCT-1996 DEFINITION Lactococcus lactis lacZ gene. ACCESSION X80037 VERSION X80037.1 GI:1556405 KEYWORDS beta-D-galactosidase; lacz gene. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 3071) AUTHORS Griffin,H.G., MacCormick,C.A. and Gasson,M.J. TITLE Cloning and analysis of a gene expressing a temperature-sensitive beta-galactosidase from lactococcus lactis JOURNAL DNA Seq. In press REFERENCE 2 (bases 1 to 3071) AUTHORS Griffin,H.G. TITLE Direct Submission JOURNAL Submitted (05-JUL-1994) H.G. Griffin, Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, UK FEATURES Location/Qualifiers source 1. .3071 /organism="Lactococcus lactis" /strain="ATCC7962" /db_xref="taxon:1358" RBS 24. .30 /gene="lacZ" gene 24. .3027 /gene="lacZ" CDS 37. .3027 /gene="lacZ" /codon_start=1 /transl_table=11 /product="beta-D-galactosidase" /protein_id="CAA56341.1" /db_xref="GI:1556406" /db_xref="SWISS-PROT:Q48727" /translation="MMTMIDVLERKDWENPVVSNWNRLPMHTPMDFLEKQSLNGLWNF DHFSRISDVPKNWLELTESKTEIIVPSNWQIEFKDKSDVPIYTNVTYPIPIQPPYVPE ANPVGAYSRYFDITKEWLESGHVHLTFEGVGSAFHFWLNGEYGGYSEDSRLPAEFDIS NLAKEGQNCLKVLVFRWSKGTYFEDQDMWRMSGIFRSVNLQWLPDNYLLDFSIKTDLD EDLDFANVKLQAYAKNMDDACLEFKLYDDEQLIGECHGFDAEIGVVNPKLWSDEIPYL YRLELTLMDRSGAVFHKETKKIGIRKIAIEKGQLKINGKALLVRGVNKHEFTPEHGYV VSEEVMIKDIKLMKEHNFNAVRCSHYPNDSRWYELCDEYGLYVMDEANIETHGMTPMN RLTNDPTYLPLMSERVTRMVMRDRNHPSIIIWSLGNESGYGSNHQALYDWCKSFDSSR PVHYEGGDDASRGATDATDIICPMYARVDSPSINAPYSLKTWMGVAGENRPLILCEYA HDMGNSLGGFGKYWQAFREIDRLQGGFIWDWVDQGLLKDGNYAYGGDFGDKPNDRQFS LNGLVFPNRQAKPALREAKYWQQYYQFELEKTPLGQVFAFTVTNEYLFRSTDNEKLCY QLTNGLEVLWENELILNMPAGGSMRIDLSELPIDGTDNLFLNIQVKTIEKYNLLESDF EVAHQQFVLQEKINFTDKIDSNEEITLLEDEELLTVRSAKQKFIFNKSNGNLSRWLDE KGNEKLLHELSEQFTRAPLDNDIGVSEVEHIDPNAWLERWKAVGFYELKTLLKNMIIQ ATENEVIISVQTDYEAKGKIAFSTIREYHIFRNGELLLKVDFKRNIEFPEPARIGLSL QLAEKAENVTYFGLGPDENYPDRRGASLFGQWNLRITDMTTPYIFPSENGLRMETREL NYGRLKVRAMGQSFAFNLSPYSQNQLAKKGHWHLLEEEAGTWLNIDGFHMGVGGDDSW SPSVAQEYLLTKGNYHYEVSFKLT" BASE COUNT 1020 a 430 c 667 g 954 t ORIGIN >>>>LLLCPJ 9/1996 X89503 L.lactis DNA for lcp J gene. 9/1996 LOCUS LLLCPJ 400 bp DNA linear BCT 11-SEP-1996 DEFINITION L.lactis DNA for lcp J gene. ACCESSION X89503 VERSION X89503.1 GI:1536913 KEYWORDS bacteriocin J46; lcp J gene. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 400) AUTHORS Huot,E., Meghrous,J., Barrena-Gonzalez,C. and Petitdemange,H. TITLE Bacteriocin J46, a new bacteriocin produced by Lactococcus lactis subsp. cremoris J46 : isolation and characterization of the protein and its gene JOURNAL Anaerobe 2, 137-145 (1996) REFERENCE 2 (bases 1 to 400) AUTHORS Petitdemange,H. TITLE Direct Submission JOURNAL Submitted (10-JUL-1995) H. Petitdemange, Laboratoire de chimie biologique 1, Boulevard des Aiguillettes, BP 239 Faculte des Sciences, F- 54506 Vandoeuvre-Les-Nancy Cedex, FRANCE FEATURES Location/Qualifiers source 1. .400 /organism="Lactococcus lactis" /strain="J46" /sub_species="cremoris" /db_xref="taxon:1358" gene 62. .351 /gene="lcp J" -35_signal 62. .67 /gene="lcp J" TATA_signal 85. .90 /gene="lcp J" RBS 132. .135 /gene="lcp J" CDS 145. .300 /gene="lcp J" /codon_start=1 /transl_table=11 /product="bacteriocin J46" /protein_id="CAA61674.1" /db_xref="GI:1536914" /db_xref="SPTREMBL:P71449" /translation="MKEQNSFNLLQEVTESELDLILGAKGGSGVIHTISHEVIYNSWN FVFTCCS" sig_peptide 145. .216 /gene="lcp J" terminator 328. .351 /gene="lcp J" BASE COUNT 145 a 51 c 69 g 135 t ORIGIN >>>>LLLCT 9/1993 X71410 L.lactis gene for lacticin 481. 9/1993 LOCUS LLLCT 1345 bp DNA linear BCT 24-SEP-1993 DEFINITION L.lactis gene for lacticin 481. ACCESSION X71410 VERSION X71410.1 GI:296368 KEYWORDS lacticin; lantibiotic; lct gene; structural gene. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 1345) AUTHORS Piard,J. TITLE Direct Submission JOURNAL Submitted (13-APR-1993) J. Piard, Lab de Genetique Microbienne, Institut de Biotechnologie, INRA, 78350 Jouy en Josas, FRANCE REFERENCE 2 (bases 1 to 1345) AUTHORS Piard,J.C., Kuipers,O.P., Rollema,H.S., Desmazeaud,M.J. and de Vos,W.M. TITLE Structure, organization, and expression of the lct gene for lacticin 481, a novel lantibiotic produced by Lactococcus lactis JOURNAL J. Biol. Chem. 268 (22), 16361-16368 (1993) MEDLINE 93346379 FEATURES Location/Qualifiers source 1. .1345 /organism="Lactococcus lactis" /strain="CNRZ481" /sub_species="lactis" /db_xref="taxon:1358" -35_signal 729. .734 -10_signal 752. .757 mRNA 764. .>1345 RBS 798. .801 /note="putative" gene 811. .966 /gene="lct" sig_peptide 811. .882 /gene="lct" CDS 811. .966 /gene="lct" /codon_start=1 /transl_table=11 /protein_id="CAA50534.1" /db_xref="GI:296369" /db_xref="SWISS-PROT:P36499" /translation="MKEQNSFNLLQEVTESELDLILGAKGGSGVIHTISHECNMNSWQ FVFTCCS" mat_peptide 883. .963 /gene="lct" /product="lacticin 481" repeat_region 994. .1017 /note="putative rho-independant transcription terminator" /rpt_type=INVERTED BASE COUNT 487 a 185 c 219 g 454 t ORIGIN >>>>LLLLAP316 5/1998 X97358 L.lyticum 16S rRNA gene, strain LLAP3. 5/1998 LOCUS LLLLAP316 1466 bp DNA linear BCT 06-MAY-1998 DEFINITION L.lyticum 16S rRNA gene, strain LLAP3. ACCESSION X97358 VERSION X97358.1 GI:1310679 KEYWORDS 16S ribosomal RNA; 16S rRNA. SOURCE Legionella lytica. ORGANISM Legionella lytica Bacteria; Proteobacteria; gamma subdivision; Legionellaceae group; Legionellaceae; Legionella. REFERENCE 1 (bases 1 to 1466) AUTHORS Birtles,R.J., Rowbotham,T.J., Raoult,D. and Harrison,T.G. TITLE Phylogenetic diversity of intra-amoebal legionellae as revealed by 16S rRNA gene sequence comparison JOURNAL Microbiology 142 (Pt 12), 3525-3530 (1996) MEDLINE 97158243 REFERENCE 2 (bases 1 to 1466) AUTHORS Birtles,R.J. TITLE Direct Submission JOURNAL Submitted (19-APR-1996) R.J. Birtles, UNITE DES RICKETTSIES, CNRS EP J0054, Fac. de Medicine, 27, bd Jean Moulin, F-13385 Marseille Cedex 5, FRANCE FEATURES Location/Qualifiers source 1. .1466 /organism="Legionella lytica" /strain="LLAP3" /db_xref="taxon:96232" rRNA 1. .1466 /gene="16S rRNA" /product="16S ribosomal RNA" gene 1. .1466 /gene="16S rRNA" BASE COUNT 387 a 316 c 463 g 300 t ORIGIN >>>>LLLMRP 11/1995 X89779 L.lactis DNA for LmrP gene. 11/1995 LOCUS LLLMRP 2019 bp DNA linear BCT 06-NOV-1995 DEFINITION L.lactis DNA for LmrP gene. ACCESSION X89779 VERSION X89779.1 GI:1052753 KEYWORDS integral membrane protein; lmrP gene. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 2019) AUTHORS Bolhuis,H., Poelarends,G., van Veen,H.W., Poolman,B., Driessen,A.J. and Konings,W.N. TITLE The Lactococcal lmrP gene encodes a proton motive force-dependent drug transporter JOURNAL J. Biol. Chem. 270 (44), 26092-26098 (1995) MEDLINE 96064673 REFERENCE 2 (bases 1 to 2019) AUTHORS Bolhuis,H. TITLE Direct Submission JOURNAL Submitted (12-JUL-1995) H. Bolhuis, University of Groningen, Department of Microbiology, Kerklaan 30, NL-9751 NN Haren, NETHERLANDS FEATURES Location/Qualifiers source 1. .2019 /organism="Lactococcus lactis" /strain="MG1363" /sub_species="lactis" /db_xref="taxon:1358" -35_signal 417. .422 -10_signal 439. .444 RBS 625. .628 gene 634. .1860 /gene="lmrP" CDS 634. .1860 /gene="lmrP" /codon_start=1 /transl_table=11 /product="LmrP integral membrane protein" /protein_id="CAA61918.1" /db_xref="GI:1052754" /db_xref="SPTREMBL:Q48658" /translation="MKEFWNLDKNLQLRLGIVFLGAFSYGTVFSSMTIYYNQYLGSAI TGILLALSAVATFVAGILAGFFADRNGRKPVMVFGTIIQLLGAALAIASNLPGHVNPW STFIAFLLISFGYNFVITAGNAMIIDASNAENRKVVFMLDYWAQNLSVILGAALGAWL FRPAFEALLVILLLTVLVSFFLTTFVMTETFKPTVKVDEKAENIFQAYKTVLQDKTYM IFMGANIATTFIIMQFDNFLPVHLSNSFKTITFWGFEIYGQRMLTIYLILACVLVVLL MTTLNRLTKDWSHQKGFIWGSLFMAIGMIFSFLTTTFTPIFIAGIVYTLGEIVYTPSV QTLGADLMNPEKIGSYNGVAAIKMPIASILAGLLVSISPMIKAIGVSLVLALTEVLAI ILVLVAVNRHQKTKLN" terminator 1888. .1910 BASE COUNT 633 a 286 c 349 g 751 t ORIGIN >>>>LLLNISZ 10/1999 Y13384 Lactococcus lactis nisZ gene and 3 ORF's. 10/1999 LOCUS LLLNISZ 2778 bp DNA linear BCT 27-OCT-1999 DEFINITION Lactococcus lactis nisZ gene and 3 ORF's. ACCESSION Y13384 VERSION Y13384.1 GI:3157416 KEYWORDS Nisin Z; NisZ gene. SOURCE Lactococcus lactis subsp. lactis. ORGANISM Lactococcus lactis subsp. lactis Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 2778) AUTHORS Immonen,T., Wahlstrom,G., Takala,T. and Saris,P.E. TITLE Evidence for a mosaic structure of the Tn5481 in Lactococcus lactis N8 JOURNAL DNA Seq. 9 (5-6), 245-261 (1998) MEDLINE 99452384 REFERENCE 2 (bases 1 to 2778) AUTHORS Immonen,T. TITLE Direct Submission JOURNAL Submitted (27-MAY-1997) T. Immonen, Institute Of Biotechnology, Biocenter 1, Viikinkaari 9, P.O.Box 56, 00014 University Of Helsinki, FINLAND FEATURES Location/Qualifiers source 1. .2778 /organism="Lactococcus lactis subsp. lactis" /strain="N8" /db_xref="taxon:1360" /clone="pLEB506" /clone="pLEB461" /clone="pLEB462" /clone="pLEB41" /clone="pLEB43" CDS complement(<1. .423) /codon_start=1 /transl_table=11 /product="homologous to branched chain amino acid transporters of LIV-II class" /protein_id="CAA73811.1" /db_xref="GI:3157417" /db_xref="SPTREMBL:O69437" /translation="MEEKLAGKDYLFIGSMLFGLFFGAGNLIFPIHMGQEAGAAISQA NFGFLITAVGFPFLGIIALGISQSNGVFELASRVNRIYAYIFTILLYLVIGPFFALPR LATTSFEIGISPFLSHELQAPLLALFSILFFGTAWFLSR" CDS complement(660. .977) /codon_start=1 /transl_table=11 /product="YjdJ-like protein" /protein_id="CAA73812.1" /db_xref="GI:3157418" /db_xref="SPTREMBL:O69438" /translation="MPFWSTKIFGEGEKLMNIIERENLFELLSDKGEIIGEMAYMPMN NSIIITHTGVSLDYRGQGLAKKLVLAGIQKARREQLKLGATCPYAVKYFREHKEELTD VLK" CDS complement(932. .1204) /codon_start=1 /transl_table=11 /product="YjdI-like protein" /protein_id="CAA73813.1" /db_xref="GI:3157419" /db_xref="SPTREMBL:O69439" /translation="MDNSKLFGEAANEEQLLKNDYRKYCGENMDIYYNVAICEHAGEC VRGNPLVFEVSRKPWIIPDNGDVASNQSVINRCPSGALKYLAKEKN" gene 2605. .2778 /gene="nisZ" CDS 2605. .2778 /gene="nisZ" /codon_start=1 /transl_table=11 /product="nisin Z" /protein_id="CAA73814.1" /db_xref="GI:3157420" /translation="MSTKDFNLDLVSVSKKDSGASPRITSISLCTPGCKTGALMGCNM KTATCNCSIHVSK" BASE COUNT 1020 a 399 c 436 g 923 t ORIGIN