// PathVisio, // a tool for data visualization and analysis using Biological Pathways // Copyright 2006-2011 BiGCaT Bioinformatics // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // package org.pathvisio.core.model; import java.util.HashMap; import java.util.Map; import java.util.Set; import java.util.TreeSet; /** * Extensible enum type for Group Styles. * * Groups can have different biological meanings (e.g. protein Complex), and * can be rendered in different ways based on that. */ public class GroupStyle implements Comparable { private static Map nameMappings = new HashMap(); private static Set values = new TreeSet(); public static final double DEFAULT_M_MARGIN = 8; //Make the bounds slightly //larger than the summed bounds //of the containing elements public static final double COMPLEX_M_MARGIN = 12; public static final GroupStyle NONE = new GroupStyle ("None"); /** * Style used to group objects for drawing convenience. */ public static final GroupStyle GROUP = new GroupStyle ("Group"); /** * Style used to represent a group of objects that belong to a complex. */ public static final GroupStyle COMPLEX = new GroupStyle ("Complex", false, COMPLEX_M_MARGIN); /** * Style used to represent a group of objects that belong to a pathway. */ public static final GroupStyle PATHWAY = new GroupStyle ("Pathway"); private String name; private boolean disallowLinks; private double mMargin; private GroupStyle (String name) { this(name, false, DEFAULT_M_MARGIN); } private GroupStyle (String name, boolean disallowLinks) { this (name, disallowLinks, DEFAULT_M_MARGIN); } private GroupStyle (String name, boolean disallowLinks, double mMargin) { if (name == null) { throw new NullPointerException(); } this.name = name; this.disallowLinks = disallowLinks; this.mMargin = mMargin; values.add(this); nameMappings.put (name, this); } /** Create an object and add it to the list. For extending the enum. */ public static GroupStyle create (String name) { return new GroupStyle(name); } /** Create an object and add it to the list. For extending the enum. */ public static GroupStyle create (String name, boolean disallowLinks) { return new GroupStyle(name, disallowLinks); } /** looks up the ConnectorType corresponding to that name. */ public static GroupStyle fromName (String value) { return nameMappings.get(value); } /** looks up the ConnectorType corresponding to its GPML name. @deprecated use {@link #fromName(String)} instead. */ public static GroupStyle fromGpmlName (String value) { return nameMappings.get(value); } /** * Get the gpml name of the given GroupStyle. * @deprecated use {@link #getName()} instead. */ public static String toGpmlName(GroupStyle style) { return style.getName(); } /** Stable identifier for this ConnectorType. */ public String getName () { return name; } public boolean isDisallowLinks() { return disallowLinks; } static public GroupStyle[] getValues() { return values.toArray(new GroupStyle[0]); } public static String[] getNames() { return nameMappings.keySet().toArray(new String[nameMappings.size()]); } public String toString() { return name; } public int compareTo(GroupStyle o) { return toString().compareTo(o.toString()); } /** Margin of group bounding-box around contained elements */ public double getMMargin() { return mMargin; } }