// PathVisio, // a tool for data visualization and analysis using Biological Pathways // Copyright 2006-2011 BiGCaT Bioinformatics // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // package org.pathvisio.core.model; import java.io.File; /** implemented by classes that can import a pathway from various different types */ public interface PathwayImporter { public String getName(); /** * Get the possible extensions this importer can read (e.g. txt). * The extensions must be unique, the correct importer will be chosen * based on file extension. * @return An array with the possible extensions (without '.') */ public String[] getExtensions(); /** * @param File that contains pathway information * @returns the result of the import, a fresh Pathway instance * @throws ConverterException if the input file could not be read or parsed, * or doesn't contain correct pathway information. */ public Pathway doImport(File file) throws ConverterException; }