// PathVisio, // a tool for data visualization and analysis using Biological Pathways // Copyright 2006-2011 BiGCaT Bioinformatics // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // package org.pathvisio.desktop.visualization; import java.awt.Color; import java.awt.Graphics2D; import java.awt.Rectangle; import java.util.List; import org.jdom.Element; import org.pathvisio.core.debug.Logger; import org.pathvisio.core.util.ColorConverter; import org.pathvisio.desktop.gex.ReporterData; import org.pathvisio.desktop.gex.Sample; import org.pathvisio.desktop.visualization.Criterion.CriterionException; /** * A rule, or boolean expression, that determines how an * Object value (usually a Double, but that is not required) * maps to a color */ public class ColorRule extends ColorSetObject { // colorCriterion for backwards compatibility public static final String XML_ELEMENT_NAME = "ColorCriterion"; private Criterion criterion; public static final Color INITIAL_COLOR = Color.WHITE; private Color color; public void setColor(Color color) { this.color = color; fireModifiedEvent(); } public Color getColor() { return color == null ? INITIAL_COLOR : color; } /** * Returns error message or null if there was no error. */ public String setExpression(String expression, List symbols) { return criterion.setExpression(expression, symbols); } public String getExpression() { return criterion.getExpression(); } public ColorRule() { setName("rule"); criterion = new Criterion(); } public ColorRule(Element xml) { loadXML(xml); } @Override Color getColor(ReporterData data, Sample key) throws CriterionException { if (criterion.evaluate(data.getByName())) return color; return null; } public void paintPreview(Graphics2D g, Rectangle bounds) { Color c = getColor(); if(c == null) c = Color.BLACK; g.setColor(c); g.fill(bounds); } public String getXmlElementName() { return XML_ELEMENT_NAME; } protected void loadXML(Element xml) { setName(xml.getAttributeValue(XML_ATTR_NAME)); try { String expression = xml.getAttributeValue(XML_ATTR_EXPRESSION); criterion = new Criterion(); criterion.setExpression(expression); Element ce = xml.getChild(XML_ELM_COLOR); if(ce != null) color = ColorConverter.parseColorElement(ce); } catch(Exception e) { Logger.log.error("Unable to load ColorCriterion", e); } } static final String XML_ELM_COLOR = "color"; static final String XML_ATTR_EXPRESSION = "expression"; public Element toXML() { Element elm = super.toXML(); Element ce = ColorConverter.createColorElement(XML_ELM_COLOR, getColor()); elm.addContent(ce); elm.setAttribute(XML_ATTR_EXPRESSION, criterion.getExpression()); return elm; } }