GPML Annotator: .DS_Store

Not a valid gpml file. .DS_Store

GPML Annotator: Hs_ACE-Inhibitor_pathway_PharmGKB.gpml

AGTenzymeuniprot
RENuniprot
Angiotensin Iuniprot
ACEenzyme
AGTR2uniprot
KNG1uniprot
ACEenzyme
NOS3uniprot
Angiotensin IIuniprot
AGTR1uniprot
BDKRB2uniprot
KNG1uniprot
ACE InhibitorCHEBI:35457
Aldosterone hmdbid:HMDB00037
Cell Membrane

GPML Annotator: Hs_Acetylcholine_Synthesis.gpml

PDHA1uniprot
PDHA2uniprot
PEMTuniprot
PCYT1Auniprot
CHKAuniprot
ACHEuniprot
CHATuniprot
Phosphatidylethanolaminechemical
Phosphatidylcholine hmdbid:HMDB02357
Glycerophosphocholine hmdbid:HMDB00086
Choline hmdbid:HMDB00097
Acetyl CoA hmdbid:HMDB01206uniprot
Pyruvate from Glycolysis
Acetate hmdbid:HMDB00042
Choline hmdbid:HMDB00097
Phosphorylcholine hmdbid:HMDB01565
Cytidine Diphosphate Choline hmdbid:HMDB01413
Acetylcholine hmdbid:HMDB00895
*Cytosol*chemical
*Synaptic Cleft*

GPML Annotator: Hs_Adipogenesis.gpml

IGF1uniprot
PTGISuniprot
PPARDuniprot
CREB1uniprot
MIXL1
GH1uniprot
ID3uniprot
WNT10Buniprot
STAT5Auniprot
STAT5Buniprot
DLK1uniprot
NR3C1uniprot
DDIT3uniprot
LIFuniprot
CEBPBuniprot
CYP26A1uniprot
CYP26B1uniprot
RXRAuniprot
RARAuniprot
NR1H3uniprot
LPLenzymeuniprot
SREBF1uniprot
FASuniprot
RBL1uniprot
GATA3uniprot
GATA2uniprot
PPARGuniprot
MEF2Auniprot
MEF2Buniprot
MEF2Cuniprot
MEF2Duniprot
ASIPuniprot
TNFuniprot
MIFuniprot
TGFB1uniprot
SERPINE1uniprot
SLC2A4uniprot
SCDuniprot
TWIST1uniprot
LEPuniprot
RETNuniprot
DF
GTF3Auniprot
RB1uniprot
RBL2uniprot
ADIPOQuniprot
ADFPuniprot
AGTenzymeuniprot
CDKN1Auniprot
E2F1uniprot
SP1uniprot
HMGA1uniprot
PLINuniprot
IL6uniprot
GADD45Auniprot
GADD45Buniprot
CEBPDuniprot
BMP1uniprot
BMP2uniprot
BMP3uniprot
BMP4uniprot
NDNuniprot
FOXO1Auniprot
KLF5uniprot
FOXC2uniprot
PPARGC1Auniprot
NCOA1uniprot
NCOA2uniprot
PPARAuniprot
STAT3uniprot
STAT2uniprot
STAT1uniprot
STAT6uniprot
SOCS1uniprot
SOCS3uniprot
CNTFRuniprot
LIFRuniprot
IL6STuniprot
MBNL1uniprot
OSMuniprot
CTNNB1uniprot
UCP1uniprot
WNT5Buniprot
WNT1uniprot
SMAD3uniprot
FZD1uniprot
DVL1uniprot
TCF1uniprot
RXRGuniprot
FRZBuniprot
INSuniprot
PBEF1uniprot
SPOCKuniprot
TRIB3uniprot
GATA4uniprot
NR2F1uniprot
NRIP1uniprot
RORAuniprot
PRLRuniprot
ADPNuniprot
CUGBP1uniprot
HIF1Auniprot
KLF6uniprot
KLF7uniprot
SFRP4uniprot
NCOR1uniprot
NCOR2uniprot
KLF15uniprot
EGR2uniprot
EBFuniprot
EPAS1uniprot
AHRuniprot
C10orf70uniprot
WWTR1uniprot
GDF10uniprot
IRS1uniprot
IRS4
BSCL2uniprot
LMNAuniprot
AGPAT2uniprot
ZMPSTE24uniprot
LPIN1uniprot
LPIN2uniprot
LIPEuniprot
PCK1uniprot
PCK2uniprot
CEBPAuniprot
IRS2uniprot
IRS3L
LPIN3uniprot
E2F4uniprot
Inhibitors of Preadipocyte to Adipocyte Transition
Transcription Factors/Modulators
Growth Factors/Hormones
Fully Differentiated Adipocyte Markers
Miscellaneous
Preadipocyte
Differentiated adipocyte
Adipocyte Secretory Products
Possible Lipodystrophy Genes
Insulin Action Genes

GPML Annotator: Hs_Alanine_and_aspartate_metabolism_KEGG.gpml

PC
2.3.1.7
2.6.1.18
ABATuniprot
6.3.2.11
3.4.13.3
4.1.1.11
4.1.1.12
GAD2uniprot
2.6.1.12
DARSuniprot
GPTuniprot
AGXTuniprot
6.1.1.7
5.1.1.1
6.3.4.4
ASSuniprot
3.5.1.1
3.5.1.38
6.3.1.1
6.3.5.4
4.3.1.1
ASLuniprot
4.3.2.2
2.6.1.14
3.5.1.3
1.4.3.2
1.4.3.16
1.2.1.18
2.1.3.2
GOT2uniprot
6.3.5.6
DARSuniprot
6.1.1.22
1.4.3.1
1.4.3.15
3.5.1.7
5.1.1.13
ASPAuniprot
GAD1uniprot
GOT1uniprot
Glycolysis / Gluconeogenesis
Pyrimidine metabolism
Pantothenate and CoA biosynthesis
Fatty acid metabolism
Nicotinate and nicotinamide metabolism
Reductive carboxylatechemical
Citrate cycle (TCA cycle)
Reductive carboxylate cycle (CO2 fixation)
His metabolism
Nicotinate and nicotinamide metabolism
Gly, Ser and Thr metabolism
Lys biosynthesis
Urea cycle and metabolism of amino groups
Arg and Pro metabolism
beta-Ala metabolism
Selenoamino acid metabolism
Cyanoamino acid metabolism
D-Ala metabolism
Pyruvate hmdbid:HMDB00243
O-Acetylcarnitine hmdbid:HMDB00201
Acetyl-CoA hmdbid:HMDB01206uniprot
Carnosine hmdbid:HMDB00033
Malonate semialdehyde hmdbid:HMDB03015
L-Alanyl-tRNACHEBI:17732
ProteinCHEBI:16541
D-AlanineCHEBI:15570
L-Aspartyl-tRNA(Asp)CHEBI:29158
N-Carbamoyl-L-aspartateCHEBI:15859
L-Aspartate hmdbid:HMDB00191
L-Argininosuccinate hmdbid:HMDB00052
Adenylosuccinate hmdbid:HMDB00536
L-Asparagine hmdbid:HMDB00168
Citrate hmdbid:HMDB00094
Oxaloacetate hmdbid:HMDB00223
2-OxosuccinamateCHEBI:16327
2-Oxoglutarate hmdbid:HMDB00208
Succinate hmdbid:HMDB00254
Fumarate hmdbid:HMDB00134
Malate hmdbid:HMDB03256
L-Aspartyl-chemical
L-Asparaginyl-tRNA(Asn)CHEBI:29265
D-AspartateCHEBI:29994
N-Acetyl-L-aspartateCHEBI:16953
cycle (CO2 fixation)
tRNA(Asn)CHEBI:29172
b-Alanine hmdbid:HMDB00056
L-Alanine hmdbid:HMDB00161

GPML Annotator: Hs_Alpha6-Beta4-Integrin_NetPath_1.gpml

RHOAuniprot
RTKNuniprot
ITGB4uniprot
FYNuniprot
CLCA1
PTK2uniprot
ITGA6uniprot
LAMR1uniprot
VIMuniprot
CLCA2
GRB2uniprot
DSTuniprot
ERBINuniprot
ERBB2uniprot
PIK3R1uniprot
PIK3R2uniprot
PIK3R3uniprot
PIK3CAuniprot
PIK3CBuniprot
PIK3CGuniprot
PIK3CDuniprot
COL17A1uniprot
SHC1uniprot
MST1Runiprot
SFNuniprot
LAMA1uniprot
LAMB1uniprot
LAMC1uniprot
LAMA5uniprot
LAMB2uniprot
LAMA2uniprot
LAMC1uniprot
LAMB1uniprot
LAMA5uniprot
LAMC1uniprot
LAMC1uniprot
LAMB1uniprot
LAMA2uniprot
LAMA3uniprot
LAMB3uniprot
LAMC2uniprot
PAK1uniprot
RAC1uniprot
PLEC1uniprot
CD151uniprot
IRS2uniprot
IRS1uniprot
EGFRuniprot
AR
TP73uniprot
ABL1uniprot
YWHABuniprot
YWHAEuniprot
YWHAHuniprot
YWHAQuniprot
YWHAZuniprot
YES1uniprot
DSPuniprot
METuniprot
EIF4EBP1uniprot
EIF4Euniprot
ITGB4BPuniprot
LAMC1uniprot
LAMB2uniprot
NTN1uniprot
AKT1uniprot
CASP3uniprot
BADuniprot
PRKCAuniprot
FRAP1uniprot
PRKCDuniprot
MMP7uniprot
SRCuniprot
RHOAuniprot
SMAD2uniprot
SMAD2uniprot
SMAD3uniprot
SMAD3uniprot
ITGB4BPuniprot
CDKN1Auniprot
ITGA6uniprot
ITGB4uniprot
ITGB4uniprot
ITGA6uniprot
ITGB4uniprot
ITGA6uniprot
ITGB4uniprot
ITGA6uniprot
ITGB4uniprot
ITGA6uniprot
Laminin 1
Laminin 2
Laminin 11
Laminin 4
Laminin 10
CY->PM
CY->NU
CY->NU
CY->NU
D
D
D
Molecular Association
Deacetylationchemical
Autophosphorylationchemical
D
Translocation
Plasma membrane
Cytoplasm
NucleusCHEBI:33252
Inhibitionchemical
Ligand
Receptor
Gene Symbol
Molecule in the pathway
Activationchemical
Acetylationchemical
Accession Number: NetPath_1; cellmap:1
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
PM
CY
NU
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Phosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
D
D
D
D
D
Laminin 5

GPML Annotator: Hs_Androgen-Receptor_NetPath_2.gpml

AR
HSPA1Auniprot
STUB1uniprot
CDC37uniprot
CDC25Buniprot
RASuniprot
RAF
MAP2K1uniprot
AR
AR
AR
CDK9uniprot
CTNNB1uniprot
CAV1uniprot
CREBBPuniprot
HDAC1uniprot
SVILuniprot
CDK7uniprot
CCNHuniprot
GTF2H1uniprot
CTDP1uniprot
GTF2F1uniprot
GTF2F2uniprot
NCOA2uniprot
NCOA1uniprot
TBPIP
NR2C2uniprot
NCOA3uniprot
FHL2uniprot
FLNAuniprot
FLNAuniprot
AESuniprot
BAG1uniprot
BRCA1uniprot
CCNE1uniprot
CCND1uniprot
JUNuniprot
CALRuniprot
COX5Buniprot
RUNX2uniprot
RUNX1uniprot
AR
SLC25A4uniprot
ATF2uniprot
TMF1uniprot
NCOA4uniprot
TGFB1I1
RNF14uniprot
RANuniprot
SRISNF2L
PIAS2uniprot
UXTuniprot
EGFRuniprot
UBE3Auniprot
ESR1uniprot
PA2G4uniprot
ETV5uniprot
MMP1uniprot
GAPDHenzymeuniprot
NR3C1uniprot
SRCuniprot
MAPK1uniprot
IL6STuniprot
MYST2uniprot
NSD1uniprot
POU2F1uniprot
POU2F2uniprot
AKT1uniprot
MDM2uniprot
PLAGL1uniprot
RAC3uniprot
RB1uniprot
RB1uniprot
RELAuniprot
RANBP9uniprot
NRIP1uniprot
RNF4uniprot
ZNF278uniprot
PXNuniprot
SPDEFuniprot
HRMT1L2uniprot
HRMT1L2uniprot
PNRC1uniprot
PIAS4uniprot
PIAS1uniprot
PIAS3uniprot
STAT3uniprot
PNRC1uniprot
SMAD3uniprot
SMAD4uniprot
SRYuniprot
NR0B2uniprot
SP1uniprot
NCOR2uniprot
TGIFuniprot
UBE2Iuniprot
SIN3Auniprot
RCHY1uniprot
RCHY1uniprot
HIPK3uniprot
PAK6uniprot
PCAFuniprot
AKT1uniprot
APPLuniprot
HTATIPuniprot
EP300uniprot
SENP1uniprot
CDC2uniprot
MAPK1uniprot
JUNuniprot
NR3C1uniprot
IL6uniprot
PTENuniprot
ESR2uniprot
NR0B1uniprot
IGFIuniprot
GHBPuniprot
GHRuniprot
TP53uniprot
CASP1uniprot
CASP3uniprot
CASP7uniprot
CASP8uniprot
HMGB2uniprot
HMGB1uniprot
YWHAHuniprot
NR5A1uniprot
ESR1uniprot
Androgen (T/DHT)
P
P
P
P
Molecular association
Proteolytic Cleavage
DeSumoylation
Phosphorylationchemical
Activationchemical
Ubiquitination
Translocation
Inhibitionchemical
Enzyme complex
Androgen Independent
P
CY
NU
CY->NU
CY->NU
CY->NU
CY->NU
Gene Symbol
Molecule in the pathway
Cytoplasm
NucleusCHEBI:33252
D
D
D
D
(Protein-protein interaction)
Reactions through unknown mechanisms/molecules
D
Receptor
Ligand
Proteins in a complex interaction
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Sumoylationchemical
Deubiquitination
Recruitment
Control
EC
EN
Extracellular
Endosome
ER
Endoplasmic reticulum
GO
Golgi appparatus
MT
Mitochondrion
PM
Plasma membrane
Androgen Independent
Accession Number: NetPath_2; cellmap:2

GPML Annotator: Hs_Apoptosis.gpml

TRADDuniprot
TNFSF10uniprot
TNFRSF1Auniprot
TNFuniprot
TNFRSF1Buniprot
TRAF1uniprot
TRAF2uniprot
MAP3K1uniprot
MAP2K4uniprot
MAPK10uniprot
FADDuniprot
RIPK1uniprot
BIRC3uniprot
BIRC2uniprot
BIRC4uniprot
CASP6uniprot
CASP7uniprot
CASP3uniprot
CASP2uniprot
BCL2uniprot
IKBKGuniprot
FASuniprot
BCL2L1uniprot
GZMBuniprot
PRF1uniprot
FASLGuniprot
BAK1uniprot
BIDuniprot
BAXuniprot
MYCuniprot
TP53uniprot
MDM2uniprot
RELAuniprot
NFKB1uniprot
APAF1uniprot
CASP9uniprot
NFKBIAuniprot
JUNuniprot
BCL2L11uniprot
HRKuniprot
BNIP3Luniprot
CASP10uniprot
DFFBuniprot
DFFAuniprot
HELLSuniprot
BADuniprot
CASP1uniprot
CASP4uniprot
CASP11uniprot
CASP8uniprot
TRAF3uniprot
TNFRSF25uniprot
LTAuniprot
TNFRSF10Buniprot
TNFRSF21uniprot
IKBKBenzymeuniprot
CHUKenzymeuniprot
NFKBIBuniprot
NFKBIEuniprot
NFKBIAuniprot
NFKBIBuniprot
NFKBIEuniprot
NFKB1uniprot
RELAuniprot
BIRC5uniprot
IRF1uniprot
IRF2uniprot
IRF3uniprot
IRF4uniprot
IRF5uniprot
IRF6uniprot
IRF7uniprot
TNFRSF1Auniprot
CRADDuniprot
RIPK1uniprot
TRADDuniprot
CFLARuniprot
CDKN2Auniprot
PMAIP1uniprot
BBC3uniprot
BOKuniprot
DIABLOuniprot
MCL1uniprot
BCL2L2uniprot
IGF1uniprot
IGF2uniprot
IGF1Runiprot
PIK3R1uniprot
AKT1uniprot
BADuniprot
CYCT
CYCSuniprot
TRP63
TP73uniprot
Apoptosis
Activator of Cell Death
Inhibitor of Cell Death
Fas Liganduniprot
DNA Fragmentation
e
e
Mitochondrion
p
p
degredation
b
Caspuniprot
b
p53 Related
Interferon regulatory factors
b
IGF1R signaling pathway

GPML Annotator: Hs_B_Cell_Receptor_NetPath_12.gpml

CD79Buniprot
BLKuniprot
FYNuniprot
LYNuniprot
SYKuniprot
BLNKuniprot
MAP4K1uniprot
CD5uniprot
PTK2uniprot
PTPN6uniprot
HCLS1uniprot
WAS
ARP2uniprot
ARP3uniprot
ARPC1Buniprot
ARPC2uniprot
ARPC3uniprot
ARPC4uniprot
ARPC5uniprot
HCLS1uniprot
GRB2uniprot
GRB2uniprot
SOS1uniprot
NCK1uniprot
VAV1uniprot
PLCG1uniprot
CR2uniprot
CD19uniprot
CD81uniprot
PLCG2uniprot
PIK3R1uniprot
PIK3R2uniprot
PIK3AP1
MAPK1uniprot
ELK1uniprot
BTKuniprot
CBLuniprot
SHC1uniprot
LCKuniprot
BCAR1uniprot
NEDD9uniprot
PTK2Buniprot
HCKuniprot
CRKLuniprot
BANK1uniprot
ITPR2uniprot
PILRBuniprot
PTPN11uniprot
CD22uniprot
CASP9uniprot
CASP7uniprot
CBLBuniprot
SH3BP2uniprot
VAV2uniprot
PRKD1uniprot
PTPN6uniprot
ITKuniprot
TEC
CRKuniprot
RAPGEF1uniprot
LCP2uniprot
BRDG1uniprot
DOK1uniprot
PTPN18uniprot
PIP5K1Auniprot
PIP5K2Auniprot
PIP5K1Buniprot
PIP5K2Buniprot
PIP5K1Cuniprot
PIP5K2C
PIP5K1Buniprot
PIP5K2Buniprot
RPS6KA1uniprot
MAPK3uniprot
RASA1uniprot
RPS6KA1uniprot
PRKCDuniprot
PRKCDuniprot
CREB1uniprot
LAT2uniprot
PDPK1uniprot
AKT1uniprot
AKT1uniprot
GSK3Auniprot
RAP2Auniprot
FOXO1Auniprot
INPP5D
DOK3uniprot
MAPK8uniprot
FCGR2Buniprot
HCLS1uniprot
RPS6KB1uniprot
RPS6uniprot
GAB2uniprot
JUNuniprot
ATF2uniprot
MAPK14uniprot
BCL6uniprot
MAPKAPK2uniprot
CDK2uniprot
RB1uniprot
CDK4uniprot
CDK6uniprot
CTNNB1uniprot
CTNNB1uniprot
GSK3Buniprot
IKBKBenzymeuniprot
CHUKenzymeuniprot
NFKBIAuniprot
RELAuniprot
RELuniprot
RELAuniprot
RELuniprot
PRKCB1uniprot
CD72uniprot
ATP2B4uniprot
NFATC2uniprot
NFATC3uniprot
NFATC2uniprot
NFATC3uniprot
PPP3CAuniprot
PPP3CBuniprot
APSuniprot
GTF2Iuniprot
PLEKHA1uniprot
PLEKHA2uniprot
DAPP1uniprot
PLEKHA2uniprot
PLEKHA1uniprot
LIME1uniprot
CSKuniprot
CARD11uniprot
BCL10uniprot
MAP3K7uniprot
IKBKGuniprot
CCND2uniprot
CCND3uniprot
CCNE1uniprot
CCNA2uniprot
HNRPKuniprot
PTPRCuniprot
PPP3R1uniprot
NFATC1uniprot
PRKCQuniprot
CDK7uniprot
CD79Auniprot
DAPP1uniprot
HDAC5uniprot
HDAC7Auniprot
HDAC5uniprot
HDAC7Auniprot
CYCSuniprot
CYCSuniprot
RAF1uniprot
MAP2K1uniprot
MAP2K2uniprot
DUSP4uniprot
DUSP6uniprot
STAT3uniprot
STAT1uniprot
ZAP70uniprot
BCL2L11uniprot
MAPK4uniprot
SLA2uniprot
BRAGuniprot
CMTM3uniprot
BCL2uniprot
IGHMuniprot
PRKCB1uniprot
RASGRP3uniprot
BRAFuniprot
PDK2uniprot
BAXuniprot
BAXuniprot
RASGRP3uniprot
GAB1uniprot
PIP5K1Buniprot
PIP5K2Buniprot
SHC1uniprot
PRKCEuniprot
PRKCEuniprot
GTF2Iuniprot
ITPR1uniprot
PIK3AP1
CARD11uniprot
RAPGEF1uniprot
CRKuniprot
BTKuniprot
BLNKuniprot
GAB1uniprot
PTPN6uniprot
PLCG2uniprot
INPP5D
CHUKenzymeuniprot
IKBKBenzymeuniprot
LYNuniprot
SYKuniprot
CD79Auniprot
LYNuniprot
SYKuniprot
LAT2uniprot
RHOAuniprot
Gene Symbol
PIK3CGuniprot
SOS2uniprot
ARP2/3
Complex
Molecular association
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Translocation
Ubiquitination
Cytoplasm
NucleusCHEBI:33252
Mitochondria
CY->NU
CY->NU
CY->NU
CY->NU
CY->PM
CY->PM
CY->NU
CY->PM
CY->PM
Autophosphorylationchemical
Plasma membrane
CY->PM
PM->CY
NU->CY
NU->CY
CY->MT
CY->PM
CY->PM
CY->PM
D
Receptor
Accesion Number: NetPath_12
MA
CY->PM
CY->PM
CY->PM
CY->PM
CY->PM
CY->PM
CY->NU
CY->NU
CY->PM
CY->NU
CY->PM
CY->PM
CY->PM
PM->CY
MT->CY
D
D
D
D
D
D
D
D
D
D
D
D
D
Molecule in the pathway
Proteins in a complex interaction
Enzyme Complex
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
D
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
PM
CY
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
NU
Ligand
D

GPML Annotator: Hs_Biogenic_Amine_Synthesis.gpml

TH
DDCuniprot
DBHuniprot
PNMTuniprot
PAH hmdbid:HMDB01867uniprot
TPH1uniprot
DDCuniprot
ASMTuniprot
HDCuniprot
DDCuniprot
GAD1uniprot
GAD2uniprot
CHATuniprot
COMTuniprot
MAOAuniprot
ACHEuniprot
MAOAuniprot
AANATenzymeuniprot
Tyrosine hmdbid:HMDB00158
L-DOPA hmdbid:HMDB00181
Dopamine hmdbid:HMDB00073
Norepinephrine hmdbid:HMDB00216
Epinephrine hmdbid:HMDB00068
Phenylalanine hmdbid:HMDB00159
Tryptophan hmdbid:HMDB00929
5-hydroxy-tryptophanchemical
Serotonin hmdbid:HMDB00259
Acetylserotoninchemical
Melatonin hmdbid:HMDB01389
Histidine hmdbid:HMDB00177
Histamine hmdbid:HMDB00870
Glutamate hmdbid:HMDB03339
GABA hmdbid:HMDB00112
Choline hmdbid:HMDB00097
Acetylcholine hmdbid:HMDB00895
Synthesis pathways for biogenic amines (in blue)
follow solid arrows through enzymatic steps,
while degradation steps follow dashed arrows.

GPML Annotator: Hs_Blood_Clotting_Cascade.gpml

F12uniprot
F11uniprot
F9
F10uniprot
F10uniprot
VWFuniprot
F5
F7
F2
F13Buniprot
SERPINF2uniprot
PLAUuniprot
PLATuniprot
SERPINB2uniprot
SERPINE1uniprot
PLGuniprot
FGBuniprot
FGAuniprot
FGGuniprot
F8
F8A1uniprot
Prothrombinase Complex
Factor XIIa
Factor XIa
Factor VIIIa
Factor IXa
Factor Xa
Factor Va
Thrombinenzymeuniprot
Fibrin Monomer
Factor XIIIa
Fibrin Polymer
Factor VIIa
+
+
Intrinsic Pathway
Extrinsic Pathway
Tissue Factor
Plasminenzyme
Fibrin
Fibrin Split Products
_
+
Thrombolysis
_
=
Tissue Injury

GPML Annotator: Hs_Calcium_regulation_in_cardiac_cells.gpml

GNASuniprot
GNAQuniprot
ANXA6uniprot
RYR2uniprot
FKBP1Auniprot
PLNuniprot
CALRuniprot
CASQ2uniprot
ADCY7uniprot
RGS2uniprot
ADCY1uniprot
ADCY4uniprot
RGS20uniprot
YWHAHuniprot
PRKCB1uniprot
YWHAQuniprot
YWHAGuniprot
YWHAEuniprot
YWHAZuniprot
RGS19uniprot
SFNuniprot
PRKCHuniprot
PRKAR2Auniprot
ADCY8uniprot
ADCY6uniprot
PRKACBuniprot
PRKCEuniprot
PRKCZuniprot
PRKCDuniprot
PRKD1uniprot
ADCY9uniprot
PRKCHuniprot
PRKCGuniprot
PRKCAuniprot
ADCY2uniprot
PRKAR1Buniprot
PRKCQuniprot
RGS4uniprot
RGS17uniprot
RGS16uniprot
RGS14uniprot
RGS11uniprot
RGS10uniprot
RGS9uniprot
RGS7uniprot
PRKAR2Buniprot
RGS5uniprot
PRKACAuniprot
RGS3uniprot
RGS1uniprot
ADCY5uniprot
ADCY3uniprot
PRKAR1Auniprot
RGS18uniprot
RGS6uniprot
GNG2uniprot
GNGT1uniprot
GNB5uniprot
GNB4uniprot
GNB3uniprot
GNB2uniprot
GNB1uniprot
GRK6uniprot
PLCB3uniprot
GNG4uniprot
GRK4uniprot
GRK5uniprot
PKIBuniprot
CALM2uniprot
PKIGuniprot
PKIAuniprot
GNG3uniprot
GNG11uniprot
GNG5uniprot
GNG13uniprot
GNG12uniprot
GNG8uniprot
GNG7uniprot
YWHABuniprot
PLCB3uniprot
ARRB2uniprot
ARRB1uniprot
CALM1uniprot
RYR3uniprot
ITPR1uniprot
ITPR2uniprot
ITPR3uniprot
CALM3uniprot
GNA11uniprot
RYR1uniprot
CASQ1uniprot
ATP2A2uniprot
ATP2A3uniprot
CAMK2Auniprot
CAMK2Buniprot
CAMK2Guniprot
CAMK2Duniprot
CAMK1uniprot
CAMK4uniprot
CACNB3uniprot
CACNB1uniprot
ATP2B3uniprot
ATP2B2uniprot
ATP2B1uniprot
SLC8A3uniprot
SLC8A1uniprot
ATP1A4uniprot
ATP1B1uniprot
ATP1B2uniprot
ATP1B3uniprot
FXYD2uniprot
CHRM1uniprot
CHRM2uniprot
CHRM3uniprot
CHRM4uniprot
CHRM5uniprot
CACNA1Cuniprot
CACNA1Duniprot
CACNA1Euniprot
CACNA1Suniprot
CACNA1Auniprot
CACNA1Buniprot
ADRB1uniprot
ADRB3uniprot
ADRB2uniprot
ADRA1Auniprot
ADRA1Buniprot
ADRA1Duniprot
GJA1uniprot
GJA3uniprot
GJA4uniprot
GJA5uniprot
GJA6
GJA7uniprot
GJA8uniprot
CX36
GJA10uniprot
GJA12uniprot
GJB1uniprot
GJB2uniprot
GJB3uniprot
GJB4uniprot
GJB5uniprot
GJB6uniprot
KCNJ3uniprot
KCNJ5uniprot
KCNB1uniprot
GNAI1uniprot
GNAI2uniprot
GNAI3uniprot
GNAO1uniprot
GNAZuniprot
cAMP hmdbid:HMDB00058
Ca2+CHEBI:29108
Na+CHEBI:29101
Na+CHEBI:29101
P
FKBP12uniprot
P
Ca
IP3
DAGuniprot
PIP2uniprot
SR
GRK
Calmodulinuniprot
PKA Inhibitors
beta Arrestin
Protein Kinase Auniprot
Signaling
PKC inhibitor Protein-1
Adenylyl Cyclasesenzymeuniprot
G
Regulators of G-protein
bg
Protein Kinase Cuniprot
Protein Kinase Auniprot
Na2+
Repolarization
Cytosolic Cachemical
2+
Ca
2+
Calreticulin-Ca
Calsequestrin C-Cachemical
Calsequestrin S-Cachemical
2+
2+
2+
2+
Cytosolic Cachemical
ATP hmdbid:HMDB00538
ADP + Pi
Phopholambanchemical
ADP + Pi
2+
Cytosolic Cachemical
Acetylcholine hmdbid:HMDB00895
Epinephrine hmdbid:HMDB00068
Epinephrine hmdbid:HMDB00068
IP4
IP3 Receptors
Ca
2+
2+
Cytosol
CaM kinaseenzyme
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
CaM kinaseenzyme
K+
Ca
2+
ATP hmdbid:HMDB00538
Dihydropyridine-Sensitive
Membrane
Depolarization
Ca
2+
Ca
2+
Na+/Ca2+ Exchanger
Na+/K+ ATPase
ATP hmdbid:HMDB00538
Adrenergic Receptor
a
L-Type Ca2+ Channel
M1 Muscarinic Receptor
b
Adrenergic Receptor
Cyclasesuniprot
Adenylylchemical
G
b
G
g
G
bg
IP3 Receptors
Connexin
Connexin
Gap Junctions (Connexins)
Ca
2+
Ca
2+
b
arrestin/GRK
b
arrestin/GRK
G alpha i/o/z
K+
K+
G
bg
G alpha i/o/z

GPML Annotator: Hs_Cell_Cycle-G1_to_S_control_Reactome.gpml

CDK4uniprot
CDK6uniprot
CCND1uniprot
CCND2uniprot
CCND3uniprot
CyclinDuniprot
Cdkuniprot
CDKN1Auniprot
CDKN1Buniprot
CDK7uniprot
CCNHuniprot
CyclinDuniprot
Cdkuniprot
RB1uniprot
E2funiprot
E2F1uniprot
E2F2uniprot
E2F3uniprot
RBL1uniprot
RB1uniprot
E2F4uniprot
E2F5uniprot
E2F6uniprot
RB1uniprot
E2funiprot
TFDP1uniprot
TFDP1uniprot
TFDP2uniprot
CDK2uniprot
CCNE1uniprot
CCNE2uniprot
POLE2uniprot
POLEuniprot
CDC25Auniprot
WEE1uniprot
MYT1uniprot
CCNE1uniprot
CCNE1uniprot
CDK4uniprot
CDK6uniprot
CDK7uniprot
CDC45Luniprot
RPA2uniprot
RPA3uniprot
RPA1uniprot
MCM2uniprot
MCM3uniprot
MCM4uniprot
MCM5uniprot
MCM6uniprot
MCM7uniprot
ORC1Luniprot
ORC2Luniprot
ORC3Luniprot
ORC4Luniprot
ORC5Luniprot
ORC6Luniprot
PRIM1uniprot
PRIM2Auniprot
POLA2uniprot
PCNAuniprot
TP53uniprot
GADD45Auniprot
MDM2uniprot
CDKN2Cuniprot
CDKN2Buniprot
CDKN2Duniprot
CDKN2Auniprot
CCNA1uniprot
CCNB1uniprot
ATMuniprot
TP53uniprot
CDKN1Cuniprot
CCNG2uniprot
MYCuniprot
CREB1uniprot
CREBL1uniprot
CREB3L1
CREB3uniprot
CREB3L4
CREB3L3
MNAT1uniprot
CDC2Auniprot
CDK
CDC2Auniprot
CDK
G1 Cyclin
Cyclin Dschemical
p
p
p
p
E2funiprot
Rb
dp1uniprot
Dependent Kinases
TTTCC/GCGC
Cell cycle DNA replication genes
G1 Phase
G1/S transition Phase
Dependent Kinases
Cyclin Eschemical
G1/S transition Cyclin
p
inactive
phosphorylation of proteins
involved in G1/S transition
DNA polymerasesuniprot
DNA replication
origen recognition
complex
p
G1/S Cell Cycle
Checkpoint
G2 Phase-M phase
u
u
u
Degredation
p
e
cakuniprot
b
b
e

GPML Annotator: Hs_Cell_cycle_KEGG.gpml

ORC6Luniprot
ORC3Luniprot
ORC5Luniprot
ORC4Luniprot
ORC1Luniprot
MCM7uniprot
MCM6uniprot
MCM5uniprot
MCM4uniprot
MCM3uniprot
BUB1Buniprot
ATMuniprot
ABL1uniprot
ATRuniprot
MAD2L2uniprot
BUB1uniprot
BUB3uniprot
EP300uniprot
WEE1uniprot
PTTG1uniprot
PTTG2
PTTG3
RB1uniprot
RB1uniprot
CDC25Buniprot
CDC25Cuniprot
CDK2uniprot
CDK2uniprot
CDK4uniprot
CDK6uniprot
CCNHuniprot
MAD1L1uniprot
GSK3Buniprot
ORC2Luniprot
CCND3uniprot
CCND2uniprot
CDKN2Auniprot
CDKN1Auniprot
CCNE1uniprot
CCNA1uniprot
CCNA2uniprot
PCNAuniprot
YWHAGuniprot
GADD45Auniprot
CDC25Auniprot
HDAC1uniprot
HDAC2uniprot
HDAC3uniprot
HDAC5uniprot
HDAC6uniprot
HDAC7Auniprot
HDAC8uniprot
MCM2uniprot
CDK2uniprot
TP53uniprot
PRKDCuniprot
CHEK1uniprot
CHEK2uniprot
MPEG1
MAD2L1uniprot
CDC2uniprot
CCNA2uniprot
CCNA1uniprot
CCNB1uniprot
CCNB2uniprot
CCNB3uniprot
CDC2uniprot
RB1uniprot
TFDP1uniprot
RBL1uniprot
CDC7uniprot
ASKuniprot
CDC45Luniprot
CDC6uniprot
CDKN1Buniprot
PKMYT1uniprot
SKP2uniprot
SKP2uniprot
CDC14Auniprot
CDC14Buniprot
CDH1uniprot
TBC1D8uniprot
MEN
ESPL1uniprot
SMC1L1uniprot
MDM2uniprot
ARFuniprot
E2F1uniprot
E2F2uniprot
E2F3uniprot
E2F5uniprot
E2F4uniprot
RBL1uniprot
E2F6uniprot
UBE2F
14-3-3
PLK1uniprot
SMAD3uniprot
TGFB1uniprot
SMAD4uniprot
HDAC4uniprot
CCNE2uniprot
CDC20uniprot
MAPKenzymeuniprot
signaling
pathway
Growth Factor
Growth Factor
withdrawal
R-point
(Start)
+p
e
e
p16,15,18,19
p27,57
p21uniprot
Histone Deacetylasesuniprot
+u
+u
+u
+p
e
e
e
Apoptosis
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
HDAC
E2F
DNACHEBI:16991
SCFuniprot
ORC
MCMuniprot
+p
DNACHEBI:16991
DNA biosynthesis
S-phase proteins
+p
SCFuniprot
-p
APC/C
-p
+p
+p
APC/C
+u
DNA damage checkpoint
Securinuniprot
Separin hmdbid:HMDB05005uniprot
Condensin
Transcription Factor E2F
Ubiquitinuniprot
mediated
proteolysischemical
ORC (Origin
Recognition Complex)
MCM (Mini-Chromosome
Maintenance) complex
G1
M
G2
S
+p
+u

GPML Annotator: Hs_Cholesterol_Biosynthesis.gpml

FDPSuniprot
IDI1uniprot
HMGCS1uniprot
HMGCRuniprot
MVKuniprot
MVDuniprot
FDPSuniprot
FDFT1uniprot
DHCR7uniprot
SC5DLuniprot
LSSuniprot
SQLEuniprot
PMVKuniprot
NSDHLuniprot
CYP51A1uniprot
SC4MOLuniprot
Acetyl-CoA hmdbid:HMDB01206uniprot
HMG-CoA hmdbid:HMDB01375
Geranyl-PP hmdbid:HMDB01285
Squalene hmdbid:HMDB00256
Squalene-2,3-Epoxide hmdbid:HMDB01188
Lanosterol hmdbid:HMDB01251
Lathosterol hmdbid:HMDB01170
7-dehydro Cholesterol hmdbid:HMDB00032
Cholesterol hmdbid:HMDB00067
Mevalonate hmdbid:HMDB00227
Mevalonate-5-Pchemical
Mevalonate-5-PPchemical
Delta-Isopentenyl-5-PPchemical
trans-trans-farnesyl-pp
DiMethylally-PPchemical
Fatty Acid Degradation

GPML Annotator: Hs_Circadian_Exercise.gpml

MYF6uniprot
KLF9uniprot
HERPUD1uniprot
SF3A3uniprot
CBX3uniprot
AZIN1uniprot
PSMA4uniprot
ZFR
SUMO1uniprot
HIST1H2BNuniprot
PURAuniprot
CRY2uniprot
PER1uniprot
PER2uniprot
CRY1uniprot
PPP1R3C
CEBPBuniprot
PPP2CBuniprot
NCOA4uniprot
ETV6uniprot
CASTuniprot
HLA-DMAuniprot
HSPA8uniprot
DNAJA1uniprot
UCP3uniprot
GSTM3uniprot
UGP2uniprot
CLDN5uniprot
PIGFuniprot
TUBB3uniprot
GFRA1uniprot
MAP3K7IP2uniprot
SUMO3uniprot
GSTP1uniprot
NCKAP1uniprot
VAPAuniprot
GENX-3414uniprot
DAZAP2uniprot
IDI1uniprot
TOB1uniprot
RBPMSuniprot
G0S2uniprot
ARNTLuniprot
NR1D2uniprot
CLOCKuniprot
BTG1uniprot
EIF4G2uniprot
QKIuniprot
Per1uniprot
Per2uniprot
E-Box
LRE
LRE
Cry1uniprot
Cry2uniprot
Per
Cry
Metabolism
Chaperone
Protein Modification
Transcription
Cell Cycle
DNA/RNA Binding
Other
Structural/Cytoskeleton
Signaling
mHrts
mHrts
mHrts
mSCNp
mLvrs,pchemical
mLvrp mSCNp
mHrts
mSCNp
mHrts
mLvrs
mHrts
mHrts
mHrts
mLvrs
mLvrs
mLvrp
mLvrp
mLvrp
mSCNp
mLvrs,pchemical
mLvrs,p SCNp
mHrts
mLvrs
mSCNp
mSCNp
mLvrs,pchemical
mLvrp mSCNp
mLvrs
mLvrs
mHrts
mLvrp
mSCNp
mHrts
mHrts
mLvrs,pchemical
mLvrp
mLvrp
mHrts Lvrsp
mHrts mLvrs
mLvrs,pchemical
mHrts mLvrs, mSCNp
NucleusCHEBI:33252
mHrts mLvrs,p mSCN
mHrts mLvrs,p
mHrts mLvrs
mHrts mLvrp
mHrts mLvrs,p mSCNp
E-Box

GPML Annotator: Hs_Complement_Activation_Classical.gpml

C1QAuniprot
C1QBuniprot
C1QGuniprot
C1Runiprot
C1Suniprot
DAFuniprot
MASP1uniprot
C2
C3
C5
C6
C7
C8Auniprot
C8Buniprot
C9
C4Auniprot
C4Buniprot
antigen/antibody
complex
C1 complex
aggregated IgG,
IgM-antigen complex,
polyanions, RNA, DNA
lipopolysacharides
Membrane
attack complex
IonsCHEBI:24870
H O
2
Cytoplasm
Plasma
Membrane
Prevents Complement Attack
Proteolytic Cleavage
Complex
Formation

GPML Annotator: Hs_Complement_and_Coagulation_Cascades_KEGG.gpml

C1QBuniprot
C1QAuniprot
C1QGuniprot
C1Runiprot
C1Suniprot
Daf2uniprot
Daf1uniprot
C2
C4
C3
Hc
C6
C9
MASP1uniprot
CD59A
MCPuniprot
CRRY
CFIenzymeuniprot
MASP2enzymeuniprot
MBL1
SERPING1uniprot
C4BPuniprot
C3AR1uniprot
C5R1uniprot
CR2uniprot
CR1uniprot
H2-BF
ADN
CFHuniprot
F3
F7
F9
F8
109821
VWFuniprot
F10uniprot
F5
F2
FGBuniprot
SERPIND1uniprot
CPB2uniprot
TFPIuniprot
F13Buniprot
F2Runiprot
SERPINC1uniprot
SERPINA5uniprot
A2Muniprot
SERPINA1uniprot
PROCuniprot
PROS1uniprot
PLATuniprot
PLAUuniprot
THBDuniprot
SERPINE1uniprot
PLAURuniprot
PLGuniprot
F12uniprot
KLKB1uniprot
KNG1uniprot
SERPINF2uniprot
BDKRB1uniprot
C7
C8Guniprot
membrane attack complex
Cell lysis
C3
Convertase
C3b
Antibody/antigen
complex
C4b/2a
Muscle contraction,
Chemotaxis,
Phagocyte recruitment
Inflammation, etc.
C5a
C3a
C4auniprot
C3b/4b, C3b, C3d
Mediators
Classical Pathway
C3b/Bb
insulin, etc.
Zymosan
Alternative Pathway
Complement Cascade
Lectin Pathway
Thrombinenzymeuniprot
Clot
fibrin degredation
Vascular injury
products
Fibrin
monomer
Cross-linked
fibrin polymer
Platelet, monocyte,
lymphocyte,
endothelial cells,
smooth muscle cells
activation, etc.
Coagulation Cascade
Extrinsic pathway
Degredation
Cell adhesion,
migration,
proliferation, etc.
Cell adhesion,
migration,
proliferation, etc.
Bradykininuniprot
Collagen,
basement membrane,
activated platelets, etc.
Fibrinolytic system
Kinin kallikrein system

GPML Annotator: Hs_Cytokines_and_Inflammatory_Response_Biocarta.gpml

CXCL2uniprot
TNFuniprot
IL1Buniprot
IL1Auniprot
IL6uniprot
TNFuniprot
IL1Buniprot
IL1Auniprot
TNFuniprot
TGFB1uniprot
TNFuniprot
IL1Auniprot
IL1Buniprot
TNFuniprot
IL1Auniprot
IL1Buniprot
IL6uniprot
IL11uniprot
IL12Buniprot
CSF1uniprot
CSF2uniprot
CSF3uniprot
CD4uniprot
IL1Auniprot
IL1Buniprot
IL6uniprot
IL10uniprot
CXCL1uniprot
IL12
IL15uniprot
IFN1@
IFNB1uniprot
TNFuniprot
IL3uniprot
IL6uniprot
IL7uniprot
CSF2uniprot
IL3uniprot
IL4uniprot
IL10uniprot
IL13uniprot
IFNGuniprot
TNFuniprot
IL2uniprot
IL12Buniprot
IL15uniprot
IL2uniprot
IFNGuniprot
IL15uniprot
IL3uniprot
IL4uniprot
IL10uniprot
IL4uniprot
IL10uniprot
IL4uniprot
IL6uniprot
TGFB1uniprot
IL2uniprot
IL4uniprot
IL5uniprot
IL13uniprot
IFNGuniprot
IL3uniprot
IL5uniprot
TGFB1uniprot
IL2uniprot
IL2uniprot
IL2uniprot
IFN1@
PDGFAuniprot
Macrophage
Neutrophil
T-helper
Hypothalamus
Fibroblasts
Endothelial Cells
Inflammatory Response
Hematopoietic Stem Cell
Hematopoiesis
TCR
T-helper
NK cell
Lymphocyte Activated
Mast Cell
B Cell
B Cell
B Cell
B Cell
Plasma Cell
Antibodies
Killer Cells (LAK)
Eos
Eos
Eos
Th
Th
Th
Tc
Tc
Tc
clonal expansion of T cells
(fever)
MHC II

GPML Annotator: Hs_Delta-Notch_NetPath_3.gpml

NOTCH1uniprot
NOTCH2uniprot
NOTCH3uniprot
NOTCH4uniprot
DLL1uniprot
DLL4uniprot
JAG1uniprot
JAG2uniprot
PSEN1uniprot
PSEN2uniprot
APH1Auniprot
APH1Buniprot
PSENENuniprot
NCSTNuniprot
ADAM10uniprot
DLL1uniprot
DLL1uniprot
ADAM17uniprot
NOTCH1uniprot
NOTCH1uniprot
NOTCH2uniprot
NOTCH4uniprot
GSK3Buniprot
NOTCH2uniprot
GSK3Buniprot
NUMBuniprot
ITCHuniprot
APPuniprot
NUMBLuniprot
PIK3R1uniprot
PIK3R2uniprot
AKT1uniprot
FURINuniprot
CNTN1uniprot
NOVuniprot
DTX1uniprot
ASCL1uniprot
EP300uniprot
TP53uniprot
LFNGuniprot
MFNGuniprot
POFUT1uniprot
SKP1Auniprot
FBXW7uniprot
HEY1uniprot
MAML2uniprot
MAML3uniprot
MAML1uniprot
SNW1uniprot
NCOR2uniprot
NCOR1uniprot
HDAC1uniprot
CIR hmdbid:HMDB00904uniprot
SAP30uniprot
HDAC2uniprot
SIN3Auniprot
HES1uniprot
STAT3uniprot
JAK2uniprot
NCOR1uniprot
NCOR2uniprot
RELAuniprot
NFKBIAuniprot
HEY2uniprot
TLE1uniprot
RELAuniprot
SMAD3uniprot
SMAD4uniprot
YY1uniprot
CDK2uniprot
LEF1uniprot
MEF2Cuniprot
SKP1Auniprot
CUL1uniprot
SKP2uniprot
RBX1uniprot
TCF3uniprot
MAPK3uniprot
MAPK1uniprot
WDR12uniprot
PCAFuniprot
FHL1uniprot
RING1uniprot
HIVEP3
SPENuniprot
EP300uniprot
SMAD1uniprot
HES6uniprot
GATA1uniprot
MAGEA1uniprot
CNTFRuniprot
CNTFuniprot
HES5
LCKuniprot
STAT3uniprot
JUNuniprot
RBPSUHuniprot
NOTCH3uniprot
DTX1uniprot
SKP2uniprot
EGFuniprot
EGFRuniprot
JAG1uniprot
JAG1uniprot
JAG2uniprot
NOTCH1uniprot
DLL4uniprot
JAG2uniprot
NOTCH3uniprot
NOTCH1uniprot
NOTCH1uniprot
NOTCH2uniprot
Molecular association
Phosphorylationchemical
Proteolytic Cleavage
Ubiquitination
Translocation
Gamma secretase complex
Intracellular Domain
-- ICD
ICD
ICD
ICD
ICD
ICD
Glycosylation
PM
GO->PM
CY->NU
NU->CY
PM->NU
PM->NU
PM->NU
NU->CY
NU->CY
D
D
D
GO->PM
PM->CY
PM->NU
ICD
(Protein-protein interaction)
Activationchemical
Inhibitionchemical
D
Reactioin through unknown mechanisms/molecules
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
CY
Plasma membrane
Cytoplasm
GO
Golgi apparatus
NucleusCHEBI:33252
NU
CY->NU
CY->NU
CY->NU
Accession Number: NetPath_3; cellmap:3
Enzyme complex
D
D
CY->NU
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
MT
Mitochondrion

GPML Annotator: Hs_DNA_replication_Reactome.gpml

RPA2uniprot
RPA3uniprot
RPA4uniprot
POLAuniprot
PRIM1uniprot
PRIM2Auniprot
POLE2uniprot
POLEuniprot
ORC3Luniprot
ORC2Luniprot
ORC5Luniprot
ORC4Luniprot
ORC1Luniprot
ORC6Luniprot
GMNNuniprot
CDT1uniprot
UBA52uniprot
MCM6uniprot
MCM5uniprot
MCM4uniprot
MCM3uniprot
MCM2uniprot
MCM7uniprot
MCM10uniprot
CDK2uniprot
POLA2uniprot
RFC5uniprot
RFC4uniprot
RFC3uniprot
RFC2uniprot
RFC1uniprot
PCNAuniprot
ASKuniprot
CDC7uniprot
RPA1uniprot
CDC45Luniprot
POLD2uniprot
POLD3uniprot
POLD4uniprot
POLD1uniprot
CDC6uniprot
UBCuniprot
Origin
Orc3uniprot
Orc2uniprot
Orc5uniprot
Orc2uniprot
Orc3uniprot
Orc5uniprot
Orc4uniprot
Orc1uniprot
Orc3uniprot
Orc5uniprot
Orc4uniprot
Orc2uniprot
Cdc6uniprot
Cdc6uniprot
Cdt1uniprot
Cdt1uniprot
Gemininuniprot
Cdc6uniprot
Cdt1uniprot
Mcm10uniprot
Cdt1uniprot
Phosphorylation of Mcm 2-7 complex
DNA polymerase alpha: primase: origin complex
DNA polymerase alpha: primase: origin complex
CTP hmdbid:HMDB00082uniprot
GTP hmdbid:HMDB01273
UTP hmdbid:HMDB00285
ATP hmdbid:HMDB00538
RNA Primer
dCTP hmdbid:HMDB00998
dGTP hmdbid:HMDB01440
dUTP hmdbid:HMDB01191
dATP hmdbid:HMDB01532
Phosphorylated Orc1
Ubiquitinuniprot
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
Phosphorylated Cdc6
Ubiquitinated Orc1
Ubiquitinated Cdc6
Degraded by proteasome in cytosol
Degraded by proteasome in cytosol
RNA primer-DNA primer
RNA primer-DNA primer
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
p49uniprot
p58uniprot
p70uniprot
p180uniprot
RFC36uniprot
RFC37uniprot
RFC38uniprot
RFC40uniprot
RFC140uniprot
Mcm 4,6,7 trimer forms and associates
Ubiquitinuniprot
with the replication fork
Orc2uniprot
Orc3uniprot
RFC Heteropentamer:RNA primer-DNA primer
ATP hmdbid:HMDB00538
PCNA homotrimer
RFC Heteropentamer:RNA primer-DNA primer:
RNA primer-DNA primer:origin duplex:PCNA
Primase
DNA Polymeraseuniprot
a
Pre-replicative complex
2. Activation of the pre-replicative complex
3. DNA replication initiation
Pre-replicative complex
1. Assembly of the pre-replicative complex
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm6uniprot
Mcm7uniprot
Orc Complex
Cdc6uniprot
Cdt1uniprot
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm6uniprot
Mcm7uniprot
4. Switching of origins to post-replicative state
5. Leading/lagging strand synthesis
Orc complex
Processive complex
Orc complex
Orc complex
Orc complex
Mcm5uniprot
Mcm5uniprot

GPML Annotator: Hs_EGFR1_NetPath_4.gpml

EGFuniprot
RAF1uniprot
HRASuniprot
NRASuniprot
KRAS2uniprot
SHOC2uniprot
PIK3R1uniprot
MAP3K2uniprot
GRB14uniprot
GRB2uniprot
GRB10uniprot
MAP3K3uniprot
SOS1uniprot
GRB7uniprot
PIK3R2uniprot
SHC1uniprot
PIK3R3uniprot
PIK3CAuniprot
PIK3CBuniprot
PIK3CDuniprot
PIK3CGuniprot
GAB1uniprot
GAB2uniprot
JAK1uniprot
STAT1uniprot
JAK2uniprot
STAT3uniprot
STAT5Auniprot
STAT2uniprot
STAT5Buniprot
MAP2K1uniprot
PRKCAuniprot
MAP3K1uniprot
PRKCZuniprot
PRKCMuniprot
PRKCIuniprot
PRKCB1uniprot
PRKCGuniprot
MAP2K2uniprot
MAP2K3uniprot
MAP2K5uniprot
MAP3K4uniprot
VAV1uniprot
VAV3uniprot
VAV2uniprot
MAPK7uniprot
MAPK1uniprot
MAPK3uniprot
ELK4uniprot
ELK1uniprot
MAPK8uniprot
MAP2K7uniprot
PTPRRuniprot
GJA1uniprot
YWHABuniprot
WNK1uniprot
EGFRuniprot
KRT7uniprot
KRT8uniprot
KRT17uniprot
KRT18uniprot
HIST3H3uniprot
SNRPD2uniprot
EPPK1uniprot
PLEC1uniprot
PTPN12uniprot
STAT3uniprot
PLSCR1uniprot
ERRFI1uniprot
DOK2uniprot
PITPNAuniprot
CBLCuniprot
CBLBuniprot
PLD2uniprot
PLD1uniprot
PRKCAuniprot
EPS15uniprot
EPS8uniprot
HD
PIK3C2Buniprot
SH3BGRLuniprot
CSKuniprot
REPS2uniprot
RALBP1uniprot
RALBuniprot
REPS1uniprot
TNK2uniprot
ABI1uniprot
SOS2uniprot
DNM1uniprot
SH3GL3uniprot
CDC42uniprot
SPRY2uniprot
JUNDuniprot
FOSuniprot
CEBPAuniprot
MYCuniprot
CEBPBuniprot
PEBP1uniprot
KLF11uniprot
SIN3Auniprot
TGIFuniprot
HDAC1uniprot
SH3KBP1uniprot
SH3GL2uniprot
JUNuniprot
SP1uniprot
AKT1uniprot
PTPN5uniprot
SNCAuniprot
RPS6KA1uniprot
RPS6KA3uniprot
RPS6KA2uniprot
AP2A1uniprot
WASLuniprot
CEACAM1uniprot
EEF1A1uniprot
APPLuniprot
DIP13Buniprot
MTA2uniprot
EPS15L1uniprot
EPN1uniprot
HIP1uniprot
RFXANKuniprot
MAPK14uniprot
TNIP1uniprot
EGFRuniprot
EGFRuniprot
RBBP7uniprot
DDEF1uniprot
STXBP1uniprot
CTNND1uniprot
PKN2uniprot
PAK1uniprot
SH2D3Cuniprot
BCAR1uniprot
CASP9uniprot
RPS6KA5uniprot
SMAD2uniprot
SMAD3uniprot
SMAD2uniprot
SMAD3uniprot
ATF1uniprot
CREB1uniprot
FOXO1Auniprot
PXNuniprot
ELF3uniprot
HAT1uniprot
CAMK2Auniprot
ITCHuniprot
ARAFuniprot
MCF2uniprot
ELF3uniprot
RPS6KA3uniprot
MAP3K2uniprot
FOXO1Auniprot
EPS15uniprot
EEF1A1uniprot
STAT1uniprot
STAT3uniprot
STAT2uniprot
STAT5Auniprot
ZNF259uniprot
PLCG1uniprot
SPRY2uniprot
PLCG2uniprot
PLCG2uniprot
PTPN6uniprot
RAF1uniprot
GAB1uniprot
SHC1uniprot
PLD1uniprot
BCAR1uniprot
SH2D3Cuniprot
STXBP1uniprot
APPLuniprot
APPLuniprot
DIP13Buniprot
STAT1uniprot
SRCuniprot
CBLuniprot
CRKuniprot
CRKLuniprot
NDUFA13uniprot
RAC1uniprot
PTK2Buniprot
CAV1uniprot
CAV2uniprot
NCK1uniprot
NCK2uniprot
PLCG1uniprot
GIT1uniprot
RGS16uniprot
SOCS1uniprot
SOCS3uniprot
INPPL1
RAB5Auniprot
USP6NLuniprot
ARF4uniprot
ZNF259uniprot
RIPK1uniprot
MAP3K14uniprot
RALGDSuniprot
RASA1uniprot
PTK6uniprot
PRKAR1Auniprot
PTPN6uniprot
PTPN11uniprot
MAPK1uniprot
MAP2K1uniprot
DUSP1uniprot
DUSP1uniprot
ARF4uniprot
ARF4uniprot
EGFuniprot
EGFuniprot
SH3GL2uniprot
EGFRuniprot
Molecular association
Translocation
Cytoplasm
NucleusCHEBI:33252
Autophosphorylationchemical
Phosphorylationchemical
Receptor
Ligand
Molecule in the pathway
Enzyme complex
Plasma membrane
Extracellular
Gene Symbol
PM
CY
PM
NU
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
CY
NU
NU
CY
MA
MA
MA
MA
CY
NU
NU
CY
CY
NU
NU
CY
CY
PM
NU
CY
MA
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
PM
CY
PM
CY
PM
CY
NU
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
CY
NU
PM
CY
PM
CY
NU
CY
NU
CY
NU
CY
PM
CY
PM
NU
PM
CY
PM
EN
PM
EN
PM
CY
NU
EC
Proteins in a complex interaction
(Protein-protein interaction)
Autodephosphorylationchemical
Acetylationchemical
Accession Number : NetPath_4; cellmap:4
MA
MA
D
D
D
Reaction through unknown mechanisms/molecules
MA
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Desumoylation

GPML Annotator: Hs_Eicosanoid_Synthesis.gpml

PLA2G2Auniprot
PLA2G6uniprot
PLA2G6uniprot
ALOX5APuniprot
ALOX5uniprot
ALOX15uniprot
ALOX5uniprot
ALOX15uniprot
Peroxidase?
DPEP1uniprot
PTGISuniprot
ALOX5APuniprot
ALOX12uniprot
ALOX15Buniprot
PTGS1uniprot
PTGS2uniprot
TBXAS1uniprot
LTC4Suniprot
GGT1uniprot
Peroxidase?
IPLA2(GAMMA)
LTA4Huniprot
PGE2 9-ketoreduc
PTGESuniprot
PTGES2uniprot
PTGDSuniprot
Peroxidase?
PGD2 11-ketoreduc
Cell Membrane
Arachadonic Acidchemical
PGH2 hmdbid:HMDB01381
5-HPETE
12-HPETE
15-HPETE
15-HETE
12-HETECHEBI:19138
LTC4 hmdbid:HMDB01198
LTD4CHEBI:28666
LTE4 hmdbid:HMDB02200
PGI2 hmdbid:HMDB01335uniprot
PGF2-alphachemical
PGE2 hmdbid:HMDB01220
PGD2 hmdbid:HMDB01403
TXA2 hmdbid:HMDB01452
Lipox = Lipoxygenase
ETE = Eicosatetraenoic Acid
HP = Hydroperoxy
H = Hydroxy
diH = Dihydroxy
PG = Prostaglandin
LT = Leukotriene
TX = Thromboxane
6-KetoPGF2-alphachemical
5-HETECHEBI:28209
LTA4 hmdbid:HMDB01337uniprot
LTB4uniprot
TXA3
TXB2CHEBI:28728

GPML Annotator: Hs_Electron_Transport_Chain.gpml

ND2uniprot
ND3uniprot
ND4uniprot
ND5uniprot
ND6uniprot
ND4Luniprot
COX2uniprot
COX3uniprot
COX4I1uniprot
COX5Auniprot
COX5Buniprot
COX6A2uniprot
COX6B1uniprot
COX7Buniprot
COX7Cuniprot
COX8Auniprot
UCP2uniprot
UCP3uniprot
SLC25A5uniprot
SLC25A6uniprot
SDHBuniprot
NDUFAB1uniprot
NDUFB3uniprot
NDUFA6uniprot
NDUFB4uniprot
NDUFB6uniprot
NDUFB7uniprot
NDUFB9uniprot
NDUFA2uniprot
NDUFA3uniprot
NDUFB8uniprot
NDUFB10uniprot
NDUFC1uniprot
NDUFB1uniprot
NDUFS5uniprot
NDUFB5uniprot
ND1uniprot
NDUFA5uniprot
NDUFS7uniprot
NDUFS6uniprot
NDUFA8uniprot
NDUFS4uniprot
SDHCuniprot
SDHDuniprot
CYTBuniprot
UQCRC1uniprot
UQCRC2uniprot
UQCRBuniprot
UQCRHuniprot
UQCRFS1uniprot
QP-Cuniprot
UCRC
UQCRuniprot
CYCSuniprot
COX1uniprot
COX7A1uniprot
COX7A2Luniprot
COX7A3uniprot
COX7A2uniprot
COX6Cuniprot
COX17uniprot
COX11uniprot
SCO1uniprot
SURF1uniprot
COX15uniprot
ATP5G1uniprot
ATP5G2uniprot
ATP5G3uniprot
ATP6uniprot
ATP5A1uniprot
ATP5Buniprot
ATP5Duniprot
ATP5Euniprot
ATP5F1uniprot
ATP5C1uniprot
ATP5Iuniprot
ATP5J2uniprot
ATP5Luniprot
ATP5Ouniprot
ATP5Huniprot
ATP5Suniprot
ATP5Juniprot
ATP8uniprot
UCP1uniprot
SLC25A27uniprot
SLC25A14uniprot
ATPIF1uniprot
NDUFS8uniprot
NDUFV2uniprot
NDUFA9uniprot
NDUFA10uniprot
NDUFS2uniprot
NDUFV1uniprot
NDUFS1uniprot
NDUFB2uniprot
NDUFA4uniprot
DAP13uniprot
NDUFA7uniprot
NDUFC2uniprot
COX6A1uniprot
SDHAuniprot
NDUFA1uniprot
NDUFV3uniprot
SLC25A4uniprot
NDUFS3uniprot
C subunit
F1 Complex
Stalk
F0 Complex
binds ATP Synthase beta
Uncoupling Protein
Complex Iuniprot
Complex IV
Complex III
Complex II
NADH-Ubiquinonechemical
Succinate-Ubiquinonechemical
Oxidoreductaseenzyme
Ubiquinol-Cytochrome Cchemical
Reductaseenzyme
Cytochrome C
Oxidase
ATP Synthase (Complex V)
Adenine Nucleotidechemical
Translocator
Ubiquinone hmdbid:HMDB02012
Assembly
Oxidoreductaseenzyme

GPML Annotator: Hs_Fas_Pathway_and_Stress_Induction_of_HSP_Regulation_Biocarta.gpml

DAXXuniprot
DAXXuniprot
FASLGuniprot
FASuniprot
HSPB1uniprot
TNFuniprot
IL1Auniprot
MAPKAPK2uniprot
MAPKAPK3uniprot
CYCSuniprot
BCL2uniprot
CASP9uniprot
APAF1uniprot
APAF1uniprot
CASP3uniprot
HSPB1uniprot
HSPB1uniprot
HSPB1uniprot
HSPB1uniprot
HSPB1uniprot
HSPB1uniprot
HSPB1uniprot
actinuniprot
FADDuniprot
FAF1uniprot
FAF1uniprot
FAP1uniprot
CASP8uniprot
CASP8uniprot
CFLARuniprot
RIPK2uniprot
CASP10uniprot
CASP7uniprot
CASP3uniprot
PARP1uniprot
PAK1uniprot
PAK2uniprot
ARHGDIBuniprot
SPTAN1uniprot
DFFAuniprot
DFFBuniprot
DFFBuniprot
PRKDCuniprot
CASP6uniprot
LMNAuniprot
LMNB1uniprot
LMNB2uniprot
RB1uniprot
MAP3K1uniprot
MAP2K4uniprot
MAPK8uniprot
MAP3K7uniprot
JUNuniprot
Stress
Mitochondria Pathway
Apoptosome
Proteasomeenzyme
NFK-B
Pathway
ROSCHEBI:26523
Cell Survival
Necrosis
P
Apoptosis
FAS Pathway
P
P
3x-P
3x-P
3x-P
DNA presentation
P
P
P
P
P
P
P
P
P
Ceramide hmdbid:HMDB04957
Extracellular
Cytoplasm
NucleusCHEBI:33252
Stress Induction of HSP regulation
Cut
Inhibitionchemical
Activate
Self-activation
Glutathione hmdbid:HMDB00125

GPML Annotator: Hs_Fatty_Acid_Beta_Oxidation_1_BiGCaT.gpml

TPI1uniprot
GK
GK2enzymeuniprot
GPD2uniprot
CPT2uniprot
CPT1Auniprot
CHKBuniprot
SLC25A20uniprot
CRATuniprot
ACSL1uniprot
ACAS2uniprot
ACSL3uniprot
ACSL4uniprot
ACSL5uniprot
ACSL6uniprot
CPT1Buniprot
ACADVLuniprot
HADHAuniprot
HADHBuniprot
HADHAuniprot
HADHBuniprot
HADHBuniprot
ACADLuniprot
HADHBuniprot
HADHAuniprot
HADHBuniprot
ECHS1uniprot
HADHSCuniprot
HADHBuniprot
LIPEuniprot
LIPCuniprot
PNPLA2
LIPFuniprot
LPLenzymeuniprot
HADHAuniprot
HADHAuniprot
ACADLuniprot
HADHAuniprot
HADHBuniprot
HADHAuniprot
Triacylglycerolchemical
Glycerol hmdbid:HMDB00131
Dihydroxyacetone Phosphate hmdbid:HMDB01473
Fatty AcidCHEBI:35366
Acyl-CoACHEBI:17984
Palmitoyl-CoA hmdbid:HMDB01338
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
L-Glycerol-3-Phosphatechemical
See Glycolysis MAPP
Trans-Hexadecanoyl-CoAchemical
(S)-3-Hydroxyhexadecanoyl-CoAchemical
3-Oxopalmitoyl-CoA hmdbid:HMDB06402
Myristoyl-CoACHEBI:15532
Acetyl-CoA hmdbid:HMDB01206uniprot
Trans-Tetradex-2-enoyl-CoAchemical
(S)-3-Hydroxytetradecanoyl-CoAchemical
Dxotetradecanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Lauroyl-CoA hmdbid:HMDB03571
2-trans-dodecenoyl-CoACHEBI:15471
(S)-3-Hydroxydodexanonyl-CoAchemical
3-Oxododexanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Decanoyl-CoACHEBI:28493
See Beta Oxidation 2 MAPP
Lipasesenzymeuniprot
See TCA Cycle MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP

GPML Annotator: Hs_Fatty_Acid_Beta_Oxidation_2_BiGCaT.gpml

ACADMuniprot
ECHS1uniprot
HADHSCuniprot
HADHBuniprot
ACADMuniprot
ECHS1uniprot
HADHSCuniprot
HADHBuniprot
ACADSuniprot
ECHS1uniprot
HADHSCuniprot
HADHBuniprot
HADHAuniprot
HADHAuniprot
HADHAuniprot
Decanoyl-CoACHEBI:28493
See Beta Oxidation 1 MAPP
Trans-Dec-2-enoyl-CoACHEBI:10723
(S)-3-Hydroxydecanoyl-CoAchemical
3-Oxocanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Octaoyl-CoAchemical
Trans-Oct-2-enoyl-CoACHEBI:27537
(S)-3-Hydroxyoctanoyl-CoAchemical
3-Oxo-octanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Hexanoyl-CoA hmdbid:HMDB02845
See Beta Oxidation Unsaturated MAPP
(S)-Hydrocyhexanoylchemical
3-Oxohexanoyl-CoACHEBI:27648
Acetyl-CoA hmdbid:HMDB01206uniprot
Butanoyl-CoA hmdbid:HMDB01088
See Beta Oxidation 3 MAPP
Trans-Hex-2-enoyl-CoACHEBI:28706
See TCA Cycle MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP

GPML Annotator: Hs_Fatty_Acid_Beta_Oxidation_3_BiGCaT.gpml

ACADSuniprot
ECHS1uniprot
HADHSCuniprot
GCDHuniprot
DLDuniprot
ACAT1uniprot
HADHAuniprot
HADHBuniprot
Butanoyl-CoA hmdbid:HMDB01088
See Beta Oxidation 2
Cronoyl-CoAchemical
(S)-3-Hydroxybutanoyl-CoA hmdbid:HMDB01166
Acetoacetyl-CoA hmdbid:HMDB01484
Glutaryl-CoA hmdbid:HMDB01339
Glutarate hmdbid:HMDB00661
Acetyl-CoA hmdbid:HMDB01206uniprot
See TCA Cycle

GPML Annotator: Hs_Fatty_Acid_Beta_Oxidation_Meta_BiGCaT.gpml

LPLenzymeuniprot
GK
GK2enzymeuniprot
GPD2uniprot
TPI1uniprot
ACSL1uniprot
ACSL3uniprot
ACSL4uniprot
ACSL5uniprot
ACSL6uniprot
CRATuniprot
CPT1Auniprot
CHKBuniprot
CPT2uniprot
SLC25A20uniprot
CPT1Buniprot
ACADVLuniprot
HADHAuniprot
HADHBuniprot
ACADLuniprot
ECHS1uniprot
HADHSCuniprot
ACADMuniprot
ECHS1uniprot
HADHAuniprot
HADHSCuniprot
HADHBuniprot
ACADSuniprot
ECHS1uniprot
ACADSuniprot
HADHSCuniprot
ACAT1uniprot
HADHAuniprot
HADHBuniprot
DLDuniprot
GCDHuniprot
LIPCuniprot
LIPEuniprot
LIPFuniprot
PNPLA2
ACAS2uniprot
Beta Oxidation 1 MAPP
Beta Oxidation 2 MAPP
Beta Oxidation 3 MAPP
This MAPP is only present for statistical purpose,
to help evaluate all beta-oxidation MAPPS at once.
Omit the 3 individual sub-mapps from statistical
evaluation to prevent redundancy.

GPML Annotator: Hs_Fatty_Acid_Omega_Oxidation_BiGCaT.gpml

CYP1A1uniprot
CYP1A2uniprot
CYP3A4uniprot
CYP4A11uniprot
CYP2A6uniprot
CYP2D6uniprot
CYP2E1uniprot
ADH1Auniprot
ADH1Buniprot
ADH1Cuniprot
ADH4uniprot
ADH6uniprot
ADH7uniprot
ALDH1A1uniprot
ALDH2uniprot
CH3-(CH2)10-COO-
HO-CH-(CH2)10-COO-
HOC-(CH2)10-COO-
-OOC-(CH2)10-COO-
Beta Oxidation

GPML Annotator: Hs_Fatty_Acid_Synthesis_BiGCaT.gpml

PC
ACLYuniprot
FASNuniprot
ACACBuniprot
ACACAuniprot
FASNuniprot
FASNuniprot
FASNuniprot
FASNuniprot
FASNuniprot
FASNuniprot
ACAA2uniprot
HADHSCuniprot
SCDuniprot
ACSL1uniprot
ACSL3uniprot
ACSL4uniprot
ACAS2uniprot
ACSL5uniprot
ACSL6uniprot
FASNuniprot
ECHS1uniprot
ECHDC3
ECH1uniprot
ECHDC2
ECHDC1
MECRuniprot
PECRuniprot
DECR1uniprot
Oxaloacetate hmdbid:HMDB00223
Pyruvate hmdbid:HMDB00243
TCA Cycle
Mitochondrion
Cytosol
Citrate hmdbid:HMDB00094
Acetyl-CoA hmdbid:HMDB01206uniprot
Acetyl-ACPchemical
Acetyl-synthase
Malonyl-CoA hmdbid:HMDB01175
Malonyl-ACPchemical
Acetoacetyl-ACPchemical
beta-hydroxybutyrylchemical
Crotonoyl-ACPchemical
Butyryl-ACPchemical
less than 6 iterations
Palmitoyl-ACPchemical
6 iterations
Palmitate hmdbid:HMDB00220
3-ketoacyl-CoAchemical
3-L-Hydroxyacyl-CoAchemical
trans-delta2-enoyl-CoAchemical
Acyl-CoA (n+2)
Long-Chain fatty acid
Fatty acyl CoA
See Triacylglyceride Synthesis MAPP

GPML Annotator: Hs_Focal_adhesion_KEGG.gpml

THBS4uniprot
TNC
TNRuniprot
VTNuniprot
VWFuniprot
LAMC1uniprot
LAMC3uniprot
TNNuniprot
COL5A3uniprot
TNXBuniprot
COL4A6uniprot
EGFuniprot
FIGFuniprot
HGFuniprot
IGF1uniprot
PDGFAuniprot
PDGFBuniprot
PGFuniprot
PELOuniprot
ITGA2uniprot
ITGA3uniprot
ITGA4uniprot
ITGA5uniprot
ITGA6uniprot
ITGA7uniprot
ITGA8uniprot
ITGA9uniprot
ITGA10uniprot
ITGA11uniprot
ITGA2Buniprot
ITGAEuniprot
ITGADuniprot
ITGALuniprot
ITGAMuniprot
ITGAVuniprot
ITGAXuniprot
ITGB1uniprot
ITGB2uniprot
ITGB3uniprot
ITGB4uniprot
ITGB5uniprot
ITGB6uniprot
ITGB8uniprot
RAP1Auniprot
RAP1Buniprot
DOCK1uniprot
SHC1uniprot
SHC3uniprot
SOS1uniprot
ZYXuniprot
CAV1uniprot
CAV3uniprot
FYNuniprot
GRB2uniprot
VASPuniprot
SRCuniprot
ILKuniprot
CAV2uniprot
ACTN1uniprot
VCLuniprot
CHADuniprot
COL11A1uniprot
COL11A2uniprot
COL2A1uniprot
COL3A1uniprot
COL4A1uniprot
COL4A2uniprot
COL4A4uniprot
COL5A1uniprot
COL5A2uniprot
COL6A2uniprot
COL1A1uniprot
COL1A2uniprot
COMPuniprot
FN1uniprot
IBSPuniprot
LAMA2uniprot
LAMA3uniprot
LAMA4uniprot
LAMA5uniprot
LAMB1uniprot
LAMB2uniprot
LAMC2uniprot
RELNuniprot
SPP1uniprot
THBS1uniprot
THBS2uniprot
THBS3uniprot
LAMB3uniprot
LAMA1uniprot
BLKuniprot
EGFRuniprot
ERBB2uniprot
FGRuniprot
FLT1uniprot
HCKuniprot
IGF1Runiprot
KDR hmdbid:HMDB06226uniprot
METuniprot
PDGFRAuniprot
PDGFRBuniprot
PTK6uniprot
SRMSuniprot
TXKuniprot
TESK2uniprot
STYK1uniprot
TNK2uniprot
TNK1uniprot
ARAFuniprot
BRAFuniprot
RAF1uniprot
MAPK4uniprot
MAPK7uniprot
SEPP1uniprot
MAP2K5uniprot
MAP2K6uniprot
MAPK12uniprot
MAPK1uniprot
MAPK6uniprot
MAP2K2uniprot
MAP2K3uniprot
MAP2K1uniprot
PTK2uniprot
ARHGAP5uniprot
RHOBuniprot
FARP2uniprot
FLNAuniprot
TLN1uniprot
PXNuniprot
CAPN1uniprot
RHOAuniprot
PDPK1uniprot
PARVBuniprot
AKT1uniprot
AKT2uniprot
AKT3uniprot
ROCK1uniprot
ROCK2uniprot
PIP5K1Cuniprot
PPP1R12Auniprot
MYL6uniprot
MYLKuniprot
MYLK2uniprot
ACTBuniprot
ACTG1uniprot
GSK3Buniprot
PIK3CAuniprot
PIK3CDuniprot
PIK3R1uniprot
PIK3R2uniprot
PIK3CGuniprot
PIK3R5uniprot
PIK3R4uniprot
PIK3CBuniprot
PTENuniprot
VAV1uniprot
RAC1uniprot
RAC2uniprot
RAC3uniprot
PAK1uniprot
PAK3uniprot
PAK2uniprot
PAK4uniprot
PAK7uniprot
PAK6uniprot
ELK1uniprot
PDGFC
PDGFDuniprot
VEGFuniprot
VEGFBuniprot
VEGFCuniprot
BCAR1uniprot
CRKuniprot
RAPGEF1uniprot
CDC42uniprot
BRAFuniprot
BADuniprot
BCL2uniprot
BIRC2uniprot
BIRC3uniprot
BIRC4uniprot
MAPK8uniprot
MAPK9uniprot
JUNuniprot
CCND1uniprot
CCND2uniprot
CCND3uniprot
ITGB7uniprot
Ha-Rasuniprot
Catnbuniprot
Diap1uniprot
Crk1uniprot
Phosphatidylinositiolchemical
signaling system
Cell Motility
Integrin alpha
Integrin beta
ITGA
ITGB
ECM-receptor interactions
Cytokine-cytokine receptor interactions
Receptor Tyrosine Kinases
RAF
MEK hmdbid:HMDB00474
ERKenzymeuniprot
PKCenzymeuniprot
PIP2uniprot
PIP3uniprot
DNACHEBI:16991
Apoptosis
Cell Cycle
DNACHEBI:16991
Cell Proliferation
Wnt Signaling
FA turnover
Regulation of
actin cytoskeleton
Actinuniprot
Polymerizationchemical
Stress Fiber/FA
formation
Filopodia
Lamellipodia
formation
Cell Survival
+p
-p
+p
+p
+p
+p
+p
+p
+p
+p
+p
-p
+p
+p
-p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p

GPML Annotator: Hs_G13_Signaling_Pathway.gpml


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LIMK1uniprot
GNA13uniprot
ARHGEF1uniprot
RHOAuniprot
PIK3R2uniprot
DIAPH1uniprot
PFN1uniprot
PIP5K2Auniprot
MAPK10uniprot
PKN1uniprot
MYBPHuniprot
PPP1CBuniprot
ARHGDIBuniprot
RAC1uniprot
MAP3K4uniprot
PAK3uniprot
MYL1uniprot
CIT hmdbid:HMDB00904uniprot
IQGAP1uniprot
IQGAP2uniprot
RPS6KB1uniprot
ROCK1uniprot
ROCK2uniprot
SH3MD2
PIK3CAuniprot
PIK3CBuniprot
PIK3CDuniprot
CFL2uniprot
CFL1uniprot
RTKNuniprot
RHPN2uniprot
ARHGDIGuniprot
CALM1uniprot
TNK2uniprot
CDC42uniprot
WASLuniprot
WAS
p140 Sra-1
13
Activated Rho A
Cytokinesis
Stress Fiber Contraction
Interaction, Focal Adhesion
Contraction & Actin-Myosin
Actinuniprot
Membrane
Ruffling
Anti-Apoptotic
Actin Polymerization
Polymerizationchemical
Filopodia Formation
Actin Reorganization
Stress Fiber
Disassembly of Actin
Cell-Cell Adhesion
G
Disappearance

GPML Annotator: Hs_G_Protein_Signaling.gpml


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GNAI1uniprot
PDE1Buniprot
PDE1Cuniprot
PDE4Auniprot
PDE4Buniprot
PDE4Cuniprot
PDE4Duniprot
PDE7Auniprot
PDE7Buniprot
PDE8Auniprot
PDE8Buniprot
GNB1uniprot
GNB2uniprot
GNB5uniprot
GNGT1uniprot
GNGT2uniprot
GNG3uniprot
GNG4uniprot
GNG5uniprot
GNG7uniprot
GNG8uniprot
GNG10uniprot
GNG11uniprot
GNG12uniprot
GNG13uniprot
GNASuniprot
GNAZuniprot
GNAI2uniprot
GNAI1uniprot
GNAO1uniprot
GNAI3uniprot
ADCY1uniprot
ADCY2uniprot
ADCY3uniprot
ADCY4uniprot
ADCY5uniprot
ADCY6uniprot
ADCY7uniprot
ADCY8uniprot
ADCY9uniprot
KCNJ3uniprot
GNAQuniprot
GNA11uniprot
GNA14uniprot
GNA15uniprot
PLCB3uniprot
ITPR1uniprot
HRASuniprot
NRASuniprot
KRASuniprot
KRASuniprot
RRASuniprot
PPP3CAuniprot
PPP3CCuniprot
PPP3CCuniprot
PRKCDuniprot
PRKCGuniprot
PRKCEuniprot
PRKCIuniprot
PRKCHuniprot
PRKD1uniprot
PRKCQuniprot
PRKCZuniprot
PRKCB1uniprot
PRKD3uniprot
GNA12uniprot
GNA13uniprot
ARHGEF1uniprot
RHOAuniprot
SLC9A1uniprot
PRKAR2Auniprot
PRKAR2Buniprot
PRKACAuniprot
PRKACBuniprot
PRKACGuniprot
PRKAR1Auniprot
PRKAR1Buniprot
PDE1Auniprot
GNB3uniprot
GNALuniprot
GNAO1uniprot
CALM1uniprot
PRKCAuniprot
AKAP1uniprot
AKAP2uniprot
AKAP3uniprot
AKAP4uniprot
AKAP5uniprot
AKAP6uniprot
AKAP10uniprot
AKAP9uniprot
AKAP8uniprot
AKAP7uniprot
AKAP11uniprot
AKAP12uniprot
AKAP13
cAMP hmdbid:HMDB00058
DAGuniprot
Ca
++
G
s
G
G
G
q
i
12/13
Protein Kinase Cuniprot
Phosphatase 2B
Protein Kinase Auniprot
Adenylate Cyclasesuniprot
Phosphodiesteraseschemical
cAMP hmdbid:HMDB00058
beta & gamma
G
Transcription
Transcription
Cell
Response
Cell
Response
Cytoskeletal
Changes
IP3
AKAPs

GPML Annotator: Hs_Glucocorticoid_Mineralocorticoid_Metabolism.gpml

20b-Hydroxysteroid Dh
3a-Hydroxysteroid Dh
3-Oxo-5b-Steroid Dh
(R)20-hydroxysteroid Dh
3a-Hydroxysteroid Dh
Cortisone beta-reductase
Corticosterone 18-Monooxy
HSD11B1uniprot
CYP11B2uniprot
CYP21A2uniprot
CYP17A1uniprot
HSD3B1uniprot
3B-OH-delta-Steroid Dh
HSD3B2uniprot
CYP17A1uniprot
CYP11A1uniprot
HSD3B1uniprot
HSD11B2uniprot
HO
O
HO
Cholesterol hmdbid:HMDB00067
From Cholersterol Biosynthesis
Progesterone hmdbid:HMDB01830
Signaling
Steroid HormoneCHEBI:26764
Pregnenolone hmdbid:HMDB00253
17-a-OH-Pregnenolonechemical
HO
=O
CH
OH
17-a-OH-Progesteronechemical
To Androgen Synthesis
and Metabolism
Substrates in
11-Deoxycorticosterone hmdbid:HMDB00016
C
=O
CH
C
=O
CH
C
O
=O
CH
C
3
3
3
2
OH
HO
OH
=O
CH
C
3
O
O
=O
CH
C
2
OH
HO
OH
11-Deoxycortisol hmdbid:HMDB00015
Cortisol hmdbid:HMDB00063
Cortisone hmdbid:HMDB02802
18-Hydroxy-Corticosteronechemical
O
=O
CH
C
2
OH
C
O
H
HO
Aldosterone hmdbid:HMDB00037
5b-Pregnan-18-alchemical
3a,11b,21-Trihydroxy-20-Oxo-chemical
5b-Pregnan-18-alchemical
11b, 21-Dihydroxy-3,20-
17a,21-Dihydroxy-5b-chemical
Pregnane-3,11,20-trionechemical
Urocortisone hmdbid:HMDB00903
Urocortisol hmdbid:HMDB00949
Cortisol hmdbid:HMDB00063
Cortolone hmdbid:HMDB03180
Pregnane 3,20-dione hmdbid:HMDB03759
11b,17a 21-Trihydroxy-5b
Glucuronides hmdbid:HMDB03141
3a-OH-5b-Pregnane-20-onechemical
5b-Pregnane-3,20-dione hmdbid:HMDB03759
HO
CH
C
3
H
H
Corticosterone hmdbid:HMDB01547
-OH
Pregnanediol hmdbid:HMDB04025
GlucocorticoidsCHEBI:24261
Progesterone Degradation
teal
have strucutures shown

GPML Annotator: Hs_Gluthation_Metabolism_KEGG.gpml

1.8.1.13
ANPEPuniprot
GGT1uniprot
GPX3uniprot
1.8.4.4
1.8.4.1
2.8.1.3
1.8.5.1
1.8.4.3
1.8.3.3
1.11.1.12
1.8.4.7
1.8.4.2
1.5.4.1
G6PDenzymeuniprot
1.1.1.43
IDH1uniprot
GSRuniprot
GSSuniprot
GCLCuniprot
GGT1uniprot
3.4.11.4
ANPEPuniprot
OPLAHuniprot
2.3.2.4
GGT1uniprot
2.3.2.4
2.3.1.80
6.3.1.8
3.5.1.78
GPX1uniprot
GPX2uniprot
GPX4uniprot
GSTA5uniprot
GSTA1uniprot
GSTM1uniprot
GSTT1uniprot
GSTT2uniprot
GSTM2uniprot
GGTLA1uniprot
GGTLA1uniprot
GCLMuniprot
GGTLA1uniprot
Glutamate metabolism
Taurine and hypotaurine
Cyanoaminochemical
Cysteine metabolism
Amino acid metabolism
L-Amino AcidCHEBI:15705
5-Oxoproline hmdbid:HMDB00267
L-Cysteine hmdbid:HMDB00574
L-Glutamate hmdbid:HMDB00148
Glycine hmdbid:HMDB00123
Cysteinyl-Glycinechemical
(5-L-Glutamyl)
Glutathione hmdbid:HMDB00125
g-L-Glutamyl-L-cysteine hmdbid:HMDB01049
Bis-g-glutamylcystinechemical
Gluthatione
NADPH hmdbid:HMDB00221
NADP+ hmdbid:HMDB00217
RX
R-S-GlutathioneCHEBI:17021
Glutamylcysteinyl-chemical
L-Glutamate hmdbid:HMDB00148
R-S-Alanylchemical
Glycine hmdbid:HMDB00123
R-S-Alaninechemical
Acetyl-CoA hmdbid:HMDB01206uniprot
R-S-Mercapturonatechemical
(reduced)
glycylspermidinechemical
glycine hmdbid:HMDB00123
metabolism
acid metabolism
g-Glutamylchemical
Cycle
-L-amino acidchemical
glutathione recycling
Glutathione utilization
Glutathione hmdbid:HMDB00125
utilization
(oxidized)

GPML Annotator: Hs_Glycogen_Metabolism.gpml

GSK3Buniprot
GBE1uniprot
GYS1uniprot
GYS2uniprot
AGLuniprot
PYGMuniprot
PYGBuniprot
PYGLuniprot
PGM1uniprot
UGP2uniprot
UGP2uniprot
GYGuniprot
GYG2uniprot
PHKA1uniprot
PHKA2uniprot
PHKBuniprot
PHKG1uniprot
PHKG2uniprot
CALM2uniprot
GSK3Auniprot
PPP2CBuniprot
PPP2R5Buniprot
PPP2R5Duniprot
PPP2R5Auniprot
PPP2R5Euniprot
PPP2R5Cuniprot
PPP2R1Auniprot
PPP2R2Auniprot
PPP2R2Buniprot
PPP2R2Cuniprot
PPP2R3Auniprot
PPP2R3Buniprot
PPP2CAuniprot
PPP2R4uniprot
CALM1uniprot
CALM3uniprot
PPP2R1Buniprot
Glycogen hmdbid:HMDB00757
Glucose hmdbid:HMDB00122
Glucose-6-phosphate hmdbid:HMDB01401
Glucose-1-phosphate hmdbid:HMDB01586
Glycogen (n+1)
UDP-Glucose +
Glycogen hmdbid:HMDB00757
Glycolysis
Glycogen (n-1) + Glucose-1-phosphate
Degradation
Synthesis
cAMP hmdbid:HMDB00058
Ser/Thr Protein Phosphatase 2A
Phosphorylase Kinaseenzyme

GPML Annotator: Hs_Glycolysis_and_Gluconeogenesis.gpml

HK1enzymeuniprot
GCKuniprot
HK2enzymeuniprot
HK3enzymeuniprot
PFKLuniprot
PFKPuniprot
ALDOAuniprot
ALDOBuniprot
ALDOCuniprot
ENO1uniprot
ENO3uniprot
ENO2uniprot
PKM2uniprot
PKLRuniprot
PC
LDHAuniprot
LDHBuniprot
LDHCuniprot
GOT1uniprot
PDHA1uniprot
PDHA2uniprot
GOT2uniprot
MDH2uniprot
G6PCuniprot
GPIuniprot
PFKMuniprot
FBP1uniprot
FBP2uniprot
TPI1uniprot
GAPDHenzymeuniprot
GAPDHSuniprot
GAPDuniprot
PGK1uniprot
PGK2uniprot
PGAM2uniprot
PGAM1uniprot
ENO1Buniprot
PKM2uniprot
LDHAL6Buniprot
PCK1uniprot
PDHBuniprot
MDH1uniprot
DLATuniprot
DLDuniprot
PDHXuniprot
Glucose hmdbid:HMDB00122
3-Phosphoglycerate hmdbid:HMDB00807
2-Phosphoglyceratechemical
Pyruvate hmdbid:HMDB00243
LactateCHEBI:24996
Fructose-1,6-bisphosphate hmdbid:HMDB01058
Fructose-6-phosphate hmdbid:HMDB00124
Glucose-6-phosphate hmdbid:HMDB01401
1,3-Bisphosphoglycerate hmdbid:HMDB01270
Phosphoenolpyruvate hmdbid:HMDB00263
Dihydroxyacetone hmdbid:HMDB01882
Phosphate hmdbid:HMDB01429
3-phosphatechemical
Glyceraldehyde-chemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Oxaloacetate hmdbid:HMDB00223
Aspartate hmdbid:HMDB00191
Oxaloacetate hmdbid:HMDB00223
Malate hmdbid:HMDB03256
Malate hmdbid:HMDB03256
Pyruvate hmdbid:HMDB00243
TCAuniprot
Cycle
Aspartate hmdbid:HMDB00191
Glycolysis
Gluconeogenesischemical
Mitochondrion
Cytosol

GPML Annotator: Hs_GPCRDB_Class_A_Rhodopsin-like.gpml


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CHRM1uniprot
CHRM2uniprot
CHRM3uniprot
CHRM4uniprot
CHRM5uniprot
ADRA1Buniprot
ADRA1Auniprot
ADRA1Duniprot
ADRA2Cuniprot
ADRA2Buniprot
ADRA2Auniprot
ADRB1uniprot
ADRB2uniprot
ADRB3uniprot
DRD1uniprot
DRD5uniprot
DRD2uniprot
DRD3uniprot
DRD4uniprot
HRH1uniprot
HRH2uniprot
HRH3uniprot
HTR1Euniprot
HTR1Funiprot
HTR1Duniprot
HTR1Buniprot
HTR1Auniprot
HTR2Buniprot
HTR2Cuniprot
HTR2Auniprot
HTR4uniprot
HTR5Auniprot
HTR6uniprot
HTR7uniprot
AGTR1uniprot
AGTR2uniprot
NMBRuniprot
BRS3uniprot
GRPRuniprot
BDKRB2uniprot
BDKRB1uniprot
C3AR1uniprot
GPR77uniprot
FPRL2uniprot
FPR1uniprot
FPRL1uniprot
AGTRL1uniprot
IL8RAuniprot
IL8RBuniprot
CCR1uniprot
CCR2uniprot
CCR3uniprot
CCR4uniprot
CCR5uniprot
CCR6uniprot
CCR8uniprot
CCR9uniprot
CCBP2uniprot
CCRL2uniprot
CXCR3uniprot
CXCR4uniprot
BLR1uniprot
CX3CR1uniprot
CCKARuniprot
CCKBRuniprot
CCR10uniprot
CCRL1uniprot
CCR7uniprot
XCR1uniprot
EDNRAuniprot
EDNRBuniprot
MC1Runiprot
MC2Runiprot
MC4Runiprot
MC5Runiprot
MC3Runiprot
NPY1Runiprot
NPY2Runiprot
PPYR1uniprot
NPY5Runiprot
NPY6Runiprot
GPR83uniprot
NTSR2uniprot
NTSR1uniprot
OPRD1uniprot
OPRK1uniprot
OPRM1uniprot
OPRL1uniprot
SSTR1uniprot
SSTR2uniprot
SSTR3uniprot
SSTR4uniprot
SSTR5uniprot
F2Runiprot
AVPR2uniprot
AVPR1Auniprot
AVPR1Buniprot
OXTRuniprot
GALR1uniprot
GALR3uniprot
GALR2uniprot
F2RL1uniprot
F2RL2uniprot
F2RL3uniprot
HCRTR2uniprot
HCRTR1uniprot
GPR74uniprot
GPR147uniprot
GPR37uniprot
GPR37L1uniprot
GPR32uniprot
CMKLR1uniprot
GPR44uniprot
GPR30uniprot
NMUR2uniprot
NMUR1uniprot
FSHRuniprot
LHCGRuniprot
RHOuniprot
OPN1MWuniprot
OPN1LWuniprot
OPN1SWuniprot
OPN3uniprot
OPN4uniprot
RRHuniprot
Rgruniprot
OR7A17uniprot
Q9UDD9
OR7C1uniprot
OR7A10uniprot
OR7A5uniprot
OR1Q1uniprot
OR1I1uniprot
OR1F1uniprot
OR1E2uniprot
OR1E1uniprot
OR1D4uniprot
OR1A1uniprot
OR1D2uniprot
OR1C1uniprot
OR1A2uniprot
OR7C2uniprot
OR1G1uniprot
OR2J1uniprot
OR10A5uniprot
OR10A4uniprot
OR2N1P
OR5V1uniprot
OR2W1uniprot
OR2S2uniprot
OR2H2uniprot
OR2B3uniprot
OR2J3uniprot
OR2J2uniprot
OR2B2uniprot
OR2B6uniprot
OR2C1uniprot
OR2D2uniprot
OR2F1uniprot
OR2F2uniprot
OR2H1uniprot
OR2A4uniprot
OR3A1uniprot
OR3A3uniprot
OR3A4uniprot
OR8B8uniprot
OR8D2uniprot
OR5F1uniprot
OR5I1uniprot
OR6B1uniprot
OR11A1uniprot
OR6A2uniprot
OR10H2uniprot
OR10H3uniprot
OR10H1uniprot
OR10J1uniprot
OR2T1uniprot
OR5U1uniprot
PTGER1uniprot
PTGER2uniprot
PTGDRuniprot
PTGER3uniprot
PTGER4uniprot
PTGFRuniprot
PTGIRuniprot
TBXA2Runiprot
ADORA1uniprot
MLNRuniprot
GPR50uniprot
MTNR1Auniprot
MTNR1Buniprot
P2RY13uniprot
GPR87uniprot
P2RY12uniprot
P2RY14uniprot
GPR27uniprot
GPR85uniprot
GPR173uniprot
MAS1uniprot
CMKOR1uniprot
GPR1uniprot
GPR31uniprot
GPR24uniprot
GPR25uniprot
GPR12uniprot
GPR4uniprot
ADORA2Auniprot
ADORA2Buniprot
ADORA3uniprot
P2RY2uniprot
P2RY1uniprot
P2RY6uniprot
P2RY4uniprot
LTB4Runiprot
GPR92uniprot
P2RY11uniprot
GPR174uniprot
GPR23uniprot
P2RY5uniprot
P2RY10uniprot
GPR35uniprot
SUCNR1uniprot
CNR2uniprot
CNR1uniprot
PTAFRuniprot
TRHRuniprot
GHSRuniprot
GPR22uniprot
GPR15uniprot
GPR10uniprot
GPR8uniprot
GPR7uniprot
GPR6uniprot
GPR3uniprot
GPR52uniprot
GPR17uniprot
GPR21uniprot
GPR19uniprot
GPR20uniprot
GPR63uniprot
OR2AG1uniprot
OR12D3uniprot
OR1D5uniprot
OR3A2uniprot
GPR45uniprot
CYSLTR1uniprot
CYSLTR2uniprot
GPR43uniprot
GPR42uniprot
GPR40uniprot
GPR41uniprot
GPR18uniprot
GPR68uniprot
GPR34uniprot
GPR171uniprot
GPR109Buniprot
MAS1Luniprot
GPR65uniprot
GPR161uniprot
GPR75uniprot
GPR81uniprot
GPR39uniprot
AmineCHEBI:32952
Acetylcholine (muscarinic)
Adrenoceptors
Alpha Adrenoceptors
Beta Adrenoceptors
Dopamine hmdbid:HMDB00073
Histamine hmdbid:HMDB00870
Serotonin hmdbid:HMDB00259
PeptideCHEBI:16670 CHEBI:16670
Angiotensinuniprot
Bombesinuniprot
Bradykininuniprot
C5a anaphylatoxinuniprot
Fmet-leu-phe
APJ like
Interleukin-8uniprot
Chemokine
C-C Chemokine
C-X-C Chemokine
BONZO receptors (CXC6R)
CCKuniprot
Other Chemokine Receptors
Endothelin
Melanocortinchemical
Neuropeptide Yuniprot
Neuropeptide Y / peptide YY
Opioid
Somatostatin
Vasopressin-like
Orexin & neuropeptide FF
Adrenomedullin (G10D)
Chemokine receptor-like
Neuromedin U
Hormone protein
Follicle stimulating hormone
Lutropin-choriogonadotropic hormone
(Rhod)opsin
Rhodopsin Vertebrate
Rhodopsin Other
Olfactory
ProstaglandinCHEBI:26333
Nucleotide-like
Adenosine hmdbid:HMDB00050
Melatonin hmdbid:HMDB01389
Class A Orphan/other
Platelet ADP & KI01 receptors
SREB
Mas proto-oncogene
ORPH
LGR like (hormone receptors)
Purinoceptors
Purinoceptor type Y
Cannabis
Platelet activating factor
Thyrotropin-releasing hormone & Secretagogue
GPR45 like
Thrombinenzymeuniprot
Olfactory Other
GP40 like
Class A Orphans

GPML Annotator: Hs_GPCRDB_Class_B_Secretin-like.gpml

CALCRuniprot
CALCRLuniprot
CRHR1uniprot
CRHR2uniprot
GIPRuniprot
GLP2Runiprot
GLP1Runiprot
GCGRuniprot
GHRHRuniprot
PTHR2uniprot
PTHR1uniprot
ADCYAP1R1uniprot
SCTRuniprot
VIPR1uniprot
VIPR2uniprot
CD97uniprot
EMR1uniprot
CD97uniprot
EMR2uniprot
LPHN1uniprot
LPHN2uniprot
LPHN3uniprot
ELTD1uniprot
GPR64uniprot
Calcitoninuniprot
Corticotropin releasing factoruniprot
Gastric inhibitory peptide
Glucagonuniprot
Growth hormone-releasing hormoneuniprot
Parathyroid hormone
PACAPuniprot
Secretinuniprot
Vasoactive intestinal polypeptideuniprot
Diuretic hormoneuniprot
EMR1uniprot
Latrophilin
Class B orphan/other

GPML Annotator: Hs_GPCRDB_Class_C_Metabotropic_glutamate_pheromone.gpml

GRM1uniprot
GRM5uniprot
GRM2uniprot
GRM3uniprot
GRM8uniprot
GRM4uniprot
GRM7uniprot
GRM6uniprot
CASRuniprot
GABBR1uniprot
GPR51uniprot
GPRC5Duniprot
GPRC5Cuniprot
GPRC5Buniprot
GPRC5Auniprot
Metabotropic glutamatechemical
Metabotropic glutamate other
GABA-B
Orphan GPRC5

GPML Annotator: Hs_GPCRDB_Other.gpml

GPR84uniprot
RLN3R1uniprot
TAAR3uniprot
TAAR2uniprot
GPR77uniprot
GPR55uniprot
GPR145uniprot
GPR88uniprot
GPR62uniprot
GPR135uniprot
GPRuniprot
TAAR5uniprot
VN1R1uniprot
HRH4uniprot
CCR5uniprot
OR7E24
CELSR3uniprot
GNRHRuniprot
P47886
P47889
P47892
OR8G2uniprot
OR8G1uniprot
FSHRuniprot
F2Runiprot
ADORA2Auniprot
EDG1uniprot
OR10A5uniprot
NTSR1uniprot
LGR6uniprot
HSA8uniprot
HSA3uniprot
HSA12
HSA10
HSA1uniprot
HTR1Funiprot
HTR2Auniprot
IL8RBuniprot
IL8RAuniprot
Q9UDD7
Q9UDD8
Q9UEB1
OR10A2uniprot
UTS2Runiprot
GPR143uniprot
LTB4R2uniprot
GPR61uniprot
GPR56uniprot
GPR116uniprot
P2RY13uniprot
GPR132uniprot
GPR73L1uniprot
GPR133uniprot
GPR18uniprot
OR10A1uniprot
CCR2uniprot
ADRA1Duniprot
ADORA3uniprot
ADRB2uniprot
OR7E18P
OR7E19P
OR7E35P
HTR7uniprot
LGR7uniprot
OR2M4uniprot
OR5-85uniprot
OR5D3P
OR5E1P
OR3A4uniprot
OR2A20P
OR2B6uniprot
OR1F1uniprot
OR2A9P
OR1N1uniprot
OR1E1uniprot
OR1G1uniprot
OR1E3P
OR1R1P
OR2F1uniprot
OR3A1uniprot
LOC168188
OR2A5uniprot
OR5D3
OR3A3uniprot
GPR17uniprot
CELSR2uniprot
CELSR1uniprot
O60411
OR51A1P
GRM8uniprot
OR2A4uniprot
Q9BYT4
Q9H2C7
GRPRuniprot
OR1J5uniprot
CNR1uniprot
CHRM3uniprot
CHRM2uniprot
CCKBRuniprot
CXCR3uniprot
GHRHRuniprot
GRCAuniprot
GPR83uniprot
GRM1uniprot
DRD3uniprot
DRD4uniprot
EMR2uniprot
EBI2uniprot
EDNRAuniprot
EMR3uniprot
FY
ALG6uniprot
P2RY11uniprot
MASS1uniprot
LPHN3uniprot
LPHN2uniprot
PTGFRuniprot
SSTR2uniprot
SMOuniprot

GPML Annotator: Hs_Hedgehog_Netpath_10.gpml

PTCH2uniprot
SHHuniprot
CDC2uniprot
PTCHuniprot
PTCH2uniprot
DHHuniprot
SMOuniprot
IHHuniprot
PTCHuniprot
PTCH2uniprot
IHHuniprot
GLI3uniprot
SKIuniprot
SUFUuniprot
SAP18uniprot
SIN3Auniprot
GLI1uniprot
GAS1uniprot
CREBBPuniprot
DYRK1Auniprot
GLI2uniprot
STK36uniprot
SUFUuniprot
CDC2uniprot
CCNB1uniprot
GLI1uniprot
GLI2uniprot
GLI3uniprot
PTCHuniprot
SUFUuniprot
RAB23uniprot
RAB23uniprot
CCNB1uniprot
SMOHuniprot
IGF2uniprot
DHHuniprot
SHHuniprot
SHHuniprot
DHHuniprot
IHHuniprot
SHHuniprot
HHIPuniprot
HHIPuniprot
HHIPuniprot
PTCHuniprot
Translocation
Plasma membrane
Cytoplasm
Endosome
NucleusCHEBI:33252
CY->NU
CY->NU
CY->NU
CY->NU
PM->EN
CY->NU
CY->PM
PM->EN
Molecular Association
Ligand
Receptor
Molecule in the pathway
Gene Symbol
Activationchemical
D
Inhibitionchemical
Accession Number: NetPath_10; cellmap:10
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
PM
CY
EN
NU
D
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Methylationchemical
Demethylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Extracellular
EC
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Palmitoylationchemical
Glycosylation

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GPML Annotator: Hs_HSP70_and_Apoptosis.gpml

MAP3K1uniprot
CASP8uniprot
CASP3uniprot
FADDuniprot
BIDuniprot
CASP2uniprot
CASP6uniprot
CASP7uniprot
FASuniprot
CASP8uniprot
PDCD8uniprot
CYCSuniprot
APAF1uniprot
CASP9uniprot
CYCSuniprot
NFKB1uniprot
FADDuniprot
TNFRSF1Auniprot
RIPK1uniprot
MAPK10uniprot
HSPA1Auniprot
HSPA1Auniprot
HSPA1Auniprot
TNF-alphauniprot
STRESS
Mitochondria
APOPTOSIS
CELL SURVIVAL
Ik alpha
degradation of
Activationchemical
of proteins
degradation
(activation of NFkB)
Inhibitionchemical
Apoptosome
Inhibitionchemical
NF-kB
FAS-Ligand
Proteasomeenzyme
pathway
Inhibitionchemical
Inhibitionchemical

GPML Annotator: Hs_Hypertrophy_model.gpml

TCF8uniprot
MYOGuniprot
IL1Auniprot
?
EIF4Euniprot
ATF3uniprot
IFNGuniprot
DUSP14uniprot
NR4A3uniprot
MINORuniprot
WDR1uniprot
JUNDuniprot
IL1R1uniprot
CYR61uniprot
GDF8uniprot
EIF4EBP1uniprot
VEGFuniprot
IL18uniprot
ADAM10uniprot
IFRD1uniprot
ANKRD1uniprot
HBEGFuniprot
-634
-698
+1
?
angiogenesis
protein synthesis
proliferative response
+500
+296
correlate to all 4 MINOR probes
HB-EGF correlated

GPML Annotator: Hs_Id_NetPath_5.gpml

ID1uniprot
ID2uniprot
ID3uniprot
ID4uniprot
ID2uniprot
RB1uniprot
RBL2uniprot
RBL1uniprot
TCF3uniprot
MYOD1uniprot
CDK2uniprot
CCNA2uniprot
CCNE1uniprot
ELK1uniprot
ELK4uniprot
ELK3uniprot
PSMD4uniprot
HES1uniprot
PAX5uniprot
PAX2uniprot
PAX8uniprot
MYF5uniprot
MYF6uniprot
MYOGuniprot
TCF12uniprot
SREBF1uniprot
MSCuniprot
IFI16uniprot
BMP2uniprot
BMPR2uniprot
VEGFuniprot
FLT1uniprot
KDR hmdbid:HMDB06226uniprot
SMAD1uniprot
SMAD4uniprot
SMAD5uniprot
ATF3uniprot
SMAD3uniprot
TGFB1uniprot
ACVRL1uniprot
SMAD4uniprot
SMAD5uniprot
SMAD1uniprot
TCR
LCKuniprot
RASuniprot
MAPKenzymeuniprot
ERKenzymeuniprot
IGF1Runiprot
IGF1uniprot
IRS1uniprot
PI3Kuniprot
CTNNB1uniprot
TERTuniprot
NFKB1uniprot
RELAuniprot
BMP6uniprot
CD40LGuniprot
NGFBuniprot
ATF3uniprot
SMAD3uniprot
EGFuniprot
TCF7L2uniprot
Gene Symbol
ID Gene Regulation
D
D
D
D
D
Control
Ligand
Receptor
Molecule in the Pathway
P
P
P
CY -> NU
Cytoplasm
Extracellular
Proteins in a complex interaction
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Activationchemical
Translocation
CY
EC
Accession Number: NetPath_5; cellmap:5
Enzyme complex
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Inhibitionchemical
Recruitment
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
Mitochondria
MT
NucleusCHEBI:33252
NU
PM
Plasma membrane

GPML Annotator: Hs_IL-1_NetPath_13.gpml

IL1Buniprot
IL1RNuniprot
IL1RAPuniprot
IL1R1uniprot
IL1Auniprot
IL1Buniprot
IL1RNuniprot
IL1R2uniprot
IL1R2uniprot
IL1RAPuniprot
IL1R2uniprot
MYD88uniprot
IRAK1uniprot
IRAK4uniprot
IL1R1uniprot
IL1R1uniprot
IRAK4uniprot
IRAK3uniprot
IRAK1uniprot
TOLLIPuniprot
PELI1uniprot
TRAF6uniprot
IRAK1uniprot
MAP3K7uniprot
MAP3K7IP2uniprot
TRAF6uniprot
MAP3K7IP2uniprot
TRAF6uniprot
MAP3K7uniprot
IRAK1uniprot
TRAF6uniprot
MAP3K7IP2uniprot
MAP3K7IP1uniprot
MAP3K7uniprot
MAPK8uniprot
MAP3K14uniprot
CHUKenzymeuniprot
CHUKenzymeuniprot
IKBKAPuniprot
SQSTM1uniprot
PRKCZuniprot
SIRPAuniprot
PTPN11uniprot
TOLLIPuniprot
IL1Auniprot
IRAK2uniprot
IRAK4uniprot
PELI1uniprot
MAP3K14uniprot
IRAK1uniprot
IL1Auniprot
IL1Buniprot
CAPN1uniprot
CAPNS1uniprot
CASP1uniprot
MAP3K7uniprot
MAP3K7IP2uniprot
SIRPAuniprot
MAPK1uniprot
AKT1uniprot
IRAK1uniprot
MAP3K7IP2uniprot
MAP3K7IP1uniprot
MAP3K7uniprot
TRAF6uniprot
MAP3K7IP2uniprot
TRAF6uniprot
MAP3K7uniprot
MAP3K7IP1uniprot
NFKBIAuniprot
NFKBIBuniprot
Gene Symbol
IL1Auniprot
IL1Buniprot
PTPN11uniprot
MAPK1uniprot
MAP2K1uniprot
MAPK3uniprot
NFKBIAuniprot
RELAuniprot
RELAuniprot
NFKB1uniprot
PLCG1uniprot
D
CY -> NU
PM -> CY
PM -> CY
D
D
D
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Autophosphorylationchemical
Dephosphorylationchemical
Palmitoylationchemical
Ubiquitination
Proteolytic cleavage
Glycosylation
Acetylationchemical
Sumoylationchemical
Methylationchemical
Activationchemical
Inhibitionchemical
Translocation
PM
CY
Cytoplasm
NU
EN
Endosome
GO
Golgi apparatus
MT
Mitochondria
CY->EX
CY->EX
Deubiquitination
Deacetylationchemical
Desumoylation
Demethylationchemical
Extracellular
D
D
D
CY -> NU
CY -> NU
(Protein-protein interaction)
EC
NucleusCHEBI:33252
Recruitment
Control
Plasma membrane
Accession Number: NetPath_13

GPML Annotator: Hs_IL-2_NetPath_14.gpml

IL2RGuniprot
IL2RBuniprot
IL2RAuniprot
IL2uniprot
IL2uniprot
IL2uniprot
JAK1uniprot
JAK3uniprot
JAK2uniprot
LCKuniprot
PIK3R1uniprot
PIK3R2uniprot
PTPN6uniprot
MAPK1uniprot
MAPK3uniprot
GAB2uniprot
SYKuniprot
IRS1uniprot
IRS2uniprot
STAM2uniprot
STAMuniprot
SOCS3uniprot
PLCB1uniprot
RPS6KB1uniprot
PIK3CAuniprot
PIK3CBuniprot
PIK3CDuniprot
PIK3CGuniprot
FYNuniprot
AKT1uniprot
FOXO3Auniprot
TERTuniprot
LYNuniprot
PTPN11uniprot
SHC1uniprot
RAF1uniprot
GRB2uniprot
PTK2Buniprot
CD53uniprot
ICAM1uniprot
SOS1uniprot
SOCS1uniprot
CISHuniprot
GNB2L1uniprot
CRKLuniprot
CBLuniprot
SHBuniprot
CRKuniprot
NMIuniprot
ETS1uniprot
ETS2uniprot
NR3C1uniprot
PRKCZuniprot
ITM2Buniprot
BCL2uniprot
IFNA1uniprot
FRAP1uniprot
HSPCAuniprot
MKNK1uniprot
EIF4Euniprot
CREB1uniprot
MAP2K1uniprot
MAP2K2uniprot
VAV1uniprot
STAT5Auniprot
STAT5Buniprot
MAPK1uniprot
MAPK3uniprot
NFKB1uniprot
RELAuniprot
NSEP1uniprot
NFKB1uniprot
RELAuniprot
NSEP1uniprot
TERTuniprot
AKT1uniprot
RAF1uniprot
KRASuniprot
MAPK8uniprot
MAPK14uniprot
MAPKAPK2uniprot
MAPK9uniprot
CHUKenzymeuniprot
EIF3S9uniprot
AKT1uniprot
STAT3uniprot
STAT5Auniprot
STAT5Buniprot
STAT1uniprot
CRKuniprot
IL2uniprot
IL2uniprot
Molecular association
Translocation
Autophosphorylationchemical
Phosphorylationchemical
Inhibitionchemical
Activationchemical
D
D
D
D
D
D
D
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> PM
CY -> NU
PM -> CY
D
D
Ligand
Receptor
Molecule in the pathway
D
D
D
Gene Symbol
Accession Number: NetPath_14
Proteins in a complex interaction
Enzyme complex
Reactions through unknown mechanisms/molecules
Plasma membrane
NucleusCHEBI:33252
(Protein-protein interaction)
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitolyationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Desumoylation
Ubiquitination
Deubiquitination
Sumoylationchemical
Recruitment
Control
CY
EC
EN
ER
GO
MT
PM
Cytoplasm
Extracellular
Endoplasmic reticulum
Endosome
Golgi apparatus
Mitochondrion
NU
NU
NucleusCHEBI:33252
MT

GPML Annotator: Hs_IL-3_NetPath_15.gpml

IL3uniprot
IL3RAuniprot
IL3uniprot
IL3uniprot
CSF2RBuniprot
IL3RAuniprot
CSF2RBuniprot
PIK3CAuniprot
PIK3CDuniprot
HRASuniprot
TEC
VAV1uniprot
JAK1uniprot
JAK2uniprot
PTPN6uniprot
PTPN11uniprot
LYNuniprot
SYKuniprot
HCKuniprot
FYNuniprot
LCKuniprot
STAT1uniprot
STAT5Auniprot
STAT6uniprot
STAT5Buniprot
STAT3uniprot
RARAuniprot
RXRAuniprot
PIK3R1uniprot
PIK3R2uniprot
AKT1uniprot
YWHAZuniprot
FESuniprot
CISHuniprot
GNB2L1uniprot
PRKCB1uniprot
SHC1uniprot
YWHAQuniprot
YWHABuniprot
GAB2uniprot
GRB2uniprot
SOS1uniprot
INPP5D
GAB1uniprot
RAPGEF1uniprot
CRKLuniprot
CBLuniprot
CRKuniprot
PILRBuniprot
BADuniprot
BCL2L1uniprot
BCL2uniprot
BAXuniprot
BCL2L11uniprot
PPP2CAuniprot
CREB1uniprot
PTK2uniprot
PXNuniprot
SRCuniprot
SOCS2uniprot
SOCS3uniprot
DNM1uniprot
VCLuniprot
RAF1uniprot
MAP2K1uniprot
RAC1uniprot
RAC2uniprot
MAPK8uniprot
MAPK1uniprot
MAPK3uniprot
GATA1uniprot
GATA2uniprot
PRKACAuniprot
PAK1uniprot
SHC1uniprot
PRKCAuniprot
PRKCAuniprot
NFKB1uniprot
NFKB1uniprot
SLC2A1uniprot
SLC2A1uniprot
BADuniprot
MAPK3uniprot
TYK2uniprot
GSK3Auniprot
GSK3Buniprot
KCNIP3uniprot
MAPK7uniprot
FOXO1Auniprot
HSPB1uniprot
MAPK14uniprot
ATF2uniprot
ATF1uniprot
MRASuniprot
KRASuniprot
RPS6KB2uniprot
RAP1Auniprot
BIRC5uniprot
MAPKAPK2uniprot
SPI1uniprot
CDC42uniprot
BMXuniprot
TNFRSF1Buniprot
ID1uniprot
SELPuniprot
FCER2uniprot
MAPK9uniprot
CHEK1uniprot
MATKuniprot
MMP2uniprot
MMP9uniprot
Gene Symbol
IL3uniprot
Molecular Association
Cytoplasm
NucleusCHEBI:33252
Autophosphorylationchemical
Phosphorylationchemical
D
CY->PM
CY->NU
CY->PM
CY->NU
D
D
Activationchemical
Plasma membrane
CY->PM
D
MT->CY
D
D
D
D
D
D
D
D
D
D
D
D
D
D
D
Mitochondrion
Accession Number: NetPath_15
Molecule in the pathway
Receptor
Ligand
Proteins in a complex interaction
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Translocation
Inhibitionchemical
PM
CY
NU
MT
Enzyme complex
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Dephosphorylationchemical
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Deacetylationchemical
Acetylationchemical
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
MA
MA
MA
MA
MA
MA

GPML Annotator: Hs_IL-4_NetPath_16.gpml

IL2RGuniprot
IL4Runiprot
IL4uniprot
FESuniprot
INPP5D
PTPN6uniprot
PTPN11uniprot
JAK1uniprot
IRS1uniprot
IL4uniprot
IL4Runiprot
IL13RA1uniprot
JAK2uniprot
TYK2uniprot
JAK1uniprot
PIK3R1uniprot
PIK3R2uniprot
PRKCZuniprot
STAT6uniprot
PAWRuniprot
IRS2uniprot
JAK3uniprot
GRB2uniprot
SOS1uniprot
CXCR4uniprot
ADRBK2uniprot
PTK2uniprot
SHC1uniprot
PLCG1uniprot
HIST2H3Cuniprot
CREBBPuniprot
EP300uniprot
MAPK14uniprot
MAPK11uniprot
ATF2uniprot
CBLuniprot
STAT6uniprot
STAT6uniprot
STAT5Auniprot
SOCS5uniprot
STAT6uniprot
MAPK1uniprot
MAPK3uniprot
MAPK14uniprot
DOK2uniprot
RASA1uniprot
NFKB1uniprot
RELAuniprot
BADuniprot
NCF1uniprot
PIK3CAuniprot
PIK3CDuniprot
BCL2L1uniprot
SOCS1uniprot
RPS6KB1uniprot
HMGA1uniprot
ETS1uniprot
SOCS3uniprot
STAT1uniprot
SRCuniprot
ELK1uniprot
AKT1uniprot
PRKCDuniprot
PRKD3uniprot
PRKCIuniprot
PRKCDuniprot
PRKD3uniprot
PRKCIuniprot
PRKCZuniprot
NFKB1uniprot
SPI1uniprot
LCKuniprot
FYNuniprot
STAMuniprot
STAT6uniprot
JAK2uniprot
Gene Symbol
Translocation
Cytoplasm
Plasma membrane
NucleusCHEBI:33252
CY -> NU
D
D
D
D
CY -> PM
CY -> PM
CY -> PM
CY -> PM
CY -> NU
D
D
D
Ligand
Receptor
Molecule in the pathway
D
Inhibitionchemical
D
Accession Number: NetPath_16
Proteins in a complex interaction
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Dephosphorylationchemical
Activationchemical
(Protein-protein interaction)
Acetylationchemical
PM
CY
NU
Enzyme complex
Autophosphorylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
EC
Extracellular
EN
Endosome
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Control

GPML Annotator: Hs_IL-5_NetPath_17.gpml

IL5uniprot
IL5uniprot
IL5RAuniprot
CSF2RBuniprot
SHC1uniprot
PTPN11uniprot
CSF2RBuniprot
DNM2uniprot
PRKCB1uniprot
MAPK1uniprot
MAPK3uniprot
SHC2uniprot
MAPK14uniprot
NFKBIAuniprot
PTK2Buniprot
PIK3CGuniprot
MAP2K2uniprot
PIK3R1uniprot
PIK3R2uniprot
PTPN6uniprot
NFKB1uniprot
MAPK9uniprot
GRB2uniprot
LYNuniprot
UNC119uniprot
CRKLuniprot
RAF1uniprot
KRASuniprot
SYKuniprot
SDCBPuniprot
SOX4uniprot
SOCS1uniprot
YWHAZuniprot
HCKuniprot
AKT1uniprot
RPS6KA1uniprot
FOXO3Auniprot
NFKB1uniprot
GSK3Auniprot
PLA2G4Auniprot
VAV1uniprot
HCLS1uniprot
CBLuniprot
APSuniprot
JUNuniprot
BTKuniprot
GSK3Buniprot
ATF2uniprot
ELK1uniprot
IL2RBuniprot
STAT5Auniprot
STAT5Buniprot
CRKLuniprot
ALOX5uniprot
ALOX5uniprot
BAXuniprot
BAXuniprot
PRKCDuniprot
PRKCDuniprot
IL5RAuniprot
CSF2RBuniprot
CTNNB1uniprot
CTNNB1uniprot
HRASuniprot
RAP1GAPuniprot
CCND3uniprot
CDKN1Buniprot
RAPGEF1uniprot
ALOX5APuniprot
RAC1uniprot
ICAM1uniprot
ICAM3uniprot
ITGB2uniprot
ITGAMuniprot
PIM1uniprot
JAK1uniprot
JAK2uniprot
STAT3uniprot
STAT1uniprot
STAT5Buniprot
STAT5Auniprot
(Protein-protein interaction)
Translocation
Autophosphorylationchemical
Recruitment
Inhibitionchemical
Activationchemical
Proteins in a complex interaction
Enzyme complex
Cytoplasm
NucleusCHEBI:33252
Plasma membrane
Control
Ubiquitination
Mitochondria
D
D
D
D
D
D
D
D
D
CY->NU
CY->NU
CY->NU
CY->MT
CY->PM
PM->NU
PM->NU
PM->NU
D
D
D
D
D
Ligand
Receptor
Molecule in the pathway
Gene Symbol
D
Accession Number: NetPath_17
Molecular association
D
Reaction through unknown mechanisms/molecules
PM
CY
NU
MT
D
D
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Deubiquitination
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO

GPML Annotator: Hs_IL-6_NetPath_18.gpml

IL6uniprot
IL6Runiprot
IL6Runiprot
IL6STuniprot
IL6STuniprot
FESuniprot
TEC
BTKuniprot
JAK2uniprot
PTPN11uniprot
JAK1uniprot
TYK2uniprot
SHC1uniprot
GRB2uniprot
STAT3uniprot
SOS1uniprot
VAV1uniprot
MAPK1uniprot
GAB1uniprot
PIK3R1uniprot
PIK3R2uniprot
STAT1uniprot
STAT1uniprot
STAT1uniprot
STAT3uniprot
STAT1uniprot
STAT3uniprot
STAT3uniprot
STAT3uniprot
MAPK14uniprot
MAPK14uniprot
SGKuniprot
SGKuniprot
NFKB1uniprot
NFKB1uniprot
NLKuniprot
HRASuniprot
NCOA1uniprot
CREBBPuniprot
RAC1uniprot
CDK9uniprot
DAXXuniprot
AR
HDAC1uniprot
PRKCDuniprot
PTK2Buniprot
GAB2uniprot
MAP2K4uniprot
HSP90AA1uniprot
SOCS3uniprot
FOSuniprot
JUNuniprot
TCF1uniprot
CEBPBuniprot
ERBB2uniprot
ERBB3uniprot
HCKuniprot
LYNuniprot
CEBPBuniprot
RAF1uniprot
CASP3uniprot
CASP9uniprot
PPP2CAuniprot
PPP2CBuniprot
PPP2R1Auniprot
PPP2R1Buniprot
PPP2R2Auniprot
PPP2R2Buniprot
PPP2R2Cuniprot
PPP2R3Auniprot
PPP2R3Buniprot
PPP2R4uniprot
PPP2R5Auniprot
PPP2R5Buniprot
PPP2R5Cuniprot
PPP2R5Duniprot
PPP2R5Euniprot
EP300uniprot
MAP2K6uniprot
CDK5uniprot
MAPTuniprot
RPS6KA2uniprot
MAPK3uniprot
FGRuniprot
PLCG1uniprot
MAP3K4uniprot
RB1uniprot
AKT1uniprot
BADuniprot
GSK3Buniprot
FOXO1Auniprot
MAP2K1uniprot
MAP2K2uniprot
EIF4Euniprot
EIF2Auniprot
MAPK8uniprot
PTK2uniprot
PXNuniprot
FOXO3Auniprot
MLLT7uniprot
INPP5D
INPPL1
RPS6KB1uniprot
EIF4EBP1uniprot
BMXuniprot
FYNuniprot
CD40uniprot
STAT3uniprot
STAT5Auniprot
STAT5Buniprot
STAT3uniprot
STAT3uniprot
MAPKAPK2uniprot
MAP3K7uniprot
MAP3K7uniprot
HSPB1uniprot
IL6uniprot
CDK5R1uniprot
Autophosphorylationchemical
Early Endosomes
Inhibitionchemical
Translocation
Cytoplasm
CY->NU
Phosphorylationchemical
Dephosphorylationchemical
Acetylationchemical
CY->NU
CY->NU
D
D
D
D
D
D
CY->EN
CY->NU
CY->NU
D
D
D
D
D
Ligand
Receptor
Molecule in the pathway
CY->NU
Activationchemical
Complex formation
Gene Symbol
D
D
Accession Number: NetPath_18
Proteins in a complex interaction
Enzyme complex
(Protein-Protein interaction)
D
Reactions through unknown mechanisms/molecules
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
CY
Extracellular
EC
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
NU
NucleusCHEBI:33252
PM
Plasma membrane
Molecular association

GPML Annotator: Hs_IL-7_NetPath_19.gpml

IL7uniprot
IL7Runiprot
JAK3uniprot
IL2RGuniprot
JAK1uniprot
FYNuniprot
LYNuniprot
STAT5Auniprot
STAT5Buniprot
STAT3uniprot
PIK3R1uniprot
PTK2Buniprot
IRS1uniprot
IRS2uniprot
AKT1uniprot
STAT1uniprot
STAM2uniprot
STAMuniprot
BAXuniprot
BADuniprot
FOXO3Auniprot
GSK3Buniprot
FOXO1Auniprot
RB1uniprot
CCND2uniprot
CCNA2uniprot
CDK4uniprot
CDK2uniprot
CLTCuniprot
BCL2L11uniprot
MCL1uniprot
BLKuniprot
MAPK1uniprot
MAPK3uniprot
CBLBuniprot
SHC1uniprot
GRB2uniprot
SOS1uniprot
CBLuniprot
IRF1uniprot
MUC1uniprot
Gene Symbol
HRASuniprot
RAF1uniprot
MAP2K1uniprot
MAP2K2uniprot
D
D
D
PM
CY
NU
EN
GO
MT
Plasma membrane
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Autophosphorylationchemical
Dephosphorylationchemical
Palmitoylationchemical
Ubiquitination
Proteolytic cleavage
Glycosylation
Acetylationchemical
Sumoylationchemical
Methylationchemical
Recruitment
Activationchemical
Inhibitionchemical
Translocation
Cytoplasm
NucleusCHEBI:33252
Endosome
Golgi apparatus
Mitochondrion
Accession Number: NetPath_19
EC
Extracellular
Deacetylationchemical
Demethylationchemical
Desumoylation
Deubiquitination
Control

GPML Annotator: Hs_IL-9_NetPath_20.gpml

IL9uniprot
IL9Runiprot
IL2RGuniprot
IRS1uniprot
PIK3R1uniprot
IRS2uniprot
GRB2uniprot
HTATIPuniprot
STAT3uniprot
STAT3uniprot
JAK1uniprot
VCPuniprot
JAK3uniprot
MAP2K2uniprot
MAPK1uniprot
MAPK3uniprot
MAP2K1uniprot
SHC1uniprot
STAT1uniprot
STAT5Auniprot
STAT5Buniprot
AKT1uniprot
PTPN11uniprot
TYK2uniprot
SOCS3uniprot
Molecular association
CY->NU
Translocation
CY
NU
Autophosphorylationchemical
Phosphorylationchemical
D
Reaction through unknown mechanisms/molecules
D
D
D
Inhibitionchemical
Receptor
Ligand
Activationchemical
Accession Number: NetPath_20
Gene Symbol
Molecule in the pathway
Cytoplasm
NucleusCHEBI:33252
Proteins in a complex interaction
Proteins in a complex interaction
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
PM
Plasma membrane
(Protein-protein interaction)

GPML Annotator: Hs_Inflammatory_Response_Pathway.gpml

COL1A1uniprot
COL1A2uniprot
COL3A1uniprot
FN1uniprot
LAMA5uniprot
LAMB1uniprot
LAMB2uniprot
LAMC1uniprot
LAMC2uniprot
VTNuniprot
THBS3uniprot
THBS1uniprot
IFNGuniprot
IL5uniprot
IL4uniprot
IL2uniprot
TNFRSF1Buniprot
TNFRSF1Auniprot
IL2RGuniprot
IL2RBuniprot
IL2RAuniprot
ZAP70uniprot
LCKuniprot
CD28uniprot
CD40uniprot
CD86uniprot
CD80uniprot
CD40LGuniprot
IL4Runiprot
IL5RAuniprot
IGHA2uniprot
IgM
IGHA1uniprot
Early Response
Blood or Lymph
Inflammation
Epithelium
Fibroblast
Fibrotic Response
B-cell
TH-cell

GPML Annotator: Hs_Insulin_Signaling.gpml


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INSRuniprot
IGF1Runiprot
IRS1uniprot
IRS4
PIK3CAuniprot
PIK3CBuniprot
PIK3CGuniprot
PIK3CDuniprot
PIK3R1uniprot
PIK3R2uniprot
PIK3R3uniprot
PIK3R4uniprot
PIK3C2Auniprot
PIK3C3uniprot
PIK3C2Guniprot
PDPK1uniprot
AKT1uniprot
AKT2uniprot
GSK3Buniprot
GSK3Auniprot
SLC2A4uniprot
PTENuniprot
PRKCIuniprot
PRKCZuniprot
PSCD3uniprot
ARF6uniprot
ARF1uniprot
INPP4Auniprot
TRIB3uniprot
FOXO1Auniprot
PFKMuniprot
GYS1uniprot
GAB1uniprot
SHC1uniprot
GRB2uniprot
PTPN11uniprot
SOS1uniprot
SOS2uniprot
RAF1uniprot
MAP2K1uniprot
MAP2K2uniprot
MAP2K3uniprot
MAP2K4uniprot
MAP2K5uniprot
MAP2K6uniprot
MAP3K1uniprot
MAP3K2uniprot
MAP3K3uniprot
MAP3K4uniprot
MAPK3uniprot
MAPK4uniprot
MAPK1uniprot
MAPK6uniprot
MAPK13uniprot
MAPK9uniprot
MAPK10uniprot
MAP4K1uniprot
MAP3K5uniprot
MAP3K10uniprot
MAPK8uniprot
MAPK14uniprot
MAP3K8uniprot
MAP3K12uniprot
MAP4K2uniprot
MAP3K7uniprot
MAP3K11uniprot
MAPK11uniprot
MAP3K9uniprot
MAP4K4uniprot
MAPK7uniprot
MAP3K13uniprot
MAP4K3uniprot
MAP3K6uniprot
MINK1uniprot
MAPK12uniprot
MAP4K5uniprot
MAP3K14uniprot
RPS6KB1uniprot
RPS6KA2uniprot
RPS6KA3uniprot
RPS6KB2uniprot
RPS6KA1uniprot
RPS6KA5uniprot
RPS6KA6uniprot
RPS6KA4uniprot
PPP1R3Auniprot
PTPRFuniprot
CBLuniprot
CBLBuniprot
CBLCuniprot
RAPGEF1uniprot
CAP1uniprot
SORBS1uniprot
RHOJuniprot
SNX26uniprot
RHOQuniprot
CRKuniprot
FLOT1uniprot
FLOT2uniprot
PTPN1uniprot
FRAP1uniprot
EIF4Euniprot
EIF4EBP1uniprot
LIPEuniprot
GYS2uniprot
EGR1uniprot
FOSuniprot
JUNuniprot
SLC2A1uniprot
GRB10uniprot
SHC3uniprot
HRASuniprot
RRADuniprot
INPPL1
PRKCAuniprot
PRKCB1uniprot
PRKCQuniprot
PRKCHuniprot
PRKCDuniprot
ENPP1uniprot
GYGuniprot
PFKLuniprot
TSC1uniprot
RHEBuniprot
TSC2uniprot
RAB4Auniprot
STXBP4uniprot
VAMP2uniprot
SNAP25uniprot
SNAP23uniprot
EHD1uniprot
EHD2uniprot
MYO1Cuniprot
KIF5Buniprot
KIF3Auniprot
SGKuniprot
SGK2uniprot
SGKLuniprot
FOXO3Auniprot
TBC1D4uniprot
ELK1uniprot
SRFuniprot
GRB14uniprot
STXBP1uniprot
STXBP2uniprot
STXBP3uniprot
STX4Auniprot
MAPK8uniprot
SOCS1uniprot
SOCS3uniprot
PRKAA1uniprot
PRKAA2uniprot
IKBKBenzymeuniprot
XBP1uniprot
RAC1uniprot
RAC2uniprot
IRS3
IRS2uniprot
SHC2uniprot
MAP2K7uniprot
APSuniprot
Glucose Transport
Modulators of Insulin Action
MEK/MAP Kinases
Insulin Receptor Substrates
PI 3-Kinase
p90 Rsk Kinases
Transcriptional Regulators & Immediate Early Genes
Vesicular Trafficking
p70 S6 Kinases
Metabolic Regulation
Ras-MAPK Signaling
PDK/Akt Signaling
Tor Signaling
Translation Regulation

GPML Annotator: Hs_Integrin-mediated_cell_adhesion_KEGG.gpml

CDC42uniprot
SHC1uniprot
SHC3uniprot
ARAFuniprot
BRAFuniprot
RAF1uniprot
MAPK4uniprot
MAPK7uniprot
CAPNS1uniprot
MYLK2uniprot
ARHGEF7uniprot
RAC1uniprot
RAC2uniprot
RAC3uniprot
PDPK1uniprot
VAV2uniprot
VAV3uniprot
ROCK2uniprot
ROCK1uniprot
SORBS1uniprot
SOS1uniprot
GIT2uniprot
PIK3R2uniprot
ZYXuniprot
CAV1uniprot
CAV2uniprot
CAV3uniprot
FYNuniprot
GRB2uniprot
SEPP1uniprot
HRASuniprot
PTK2uniprot
PTK2uniprot
p110uniprot
RHOuniprot
PI5K
CSKuniprot
BCAR1uniprot
SRCuniprot
AKT1uniprot
AKT2uniprot
MYO-P
MYO
CAPN2uniprot
CAPN3uniprot
CAPN5uniprot
CAPN7uniprot
CAPN9uniprot
CAPN10uniprot
CAPN11uniprot
CAPN6uniprot
PAK2uniprot
PAK3uniprot
PAK4uniprot
PAK6uniprot
ACTN
TLN1uniprot
MAP2K3uniprot
MAP2K5uniprot
MAP2K6uniprot
MAPK12uniprot
AKT3uniprot
DOCK1uniprot
CRKuniprot
RAPGEF1uniprot
RAP1Auniprot
RAP1Buniprot
MAPK1uniprot
MAPK6uniprot
MAP2K1uniprot
MAP2K2uniprot
CAPN1uniprot
ITGA2uniprot
ITGA3uniprot
ITGA4uniprot
ITGA5uniprot
ITGA6uniprot
ITGA8uniprot
ITGA9uniprot
ITGA10uniprot
ITGA11uniprot
ITGA2Buniprot
ITGAEuniprot
ITGADuniprot
ITGALuniprot
ITGAMuniprot
ITGAVuniprot
ITGAXuniprot
ITGB1uniprot
ITGB2uniprot
ITGB3uniprot
ITGB4uniprot
ITGB5uniprot
ITGB6uniprot
ITGB7uniprot
ITGB8uniprot
SRCuniprot
VCLuniprot
TNS1uniprot
MAPK10uniprot
PXNuniprot
ILKuniprot
PAK1uniprot
VASPuniprot
ITGA7uniprot
ITGA1uniprot
CAPNuniprot
PI3Kuniprot
Phosphatidylinositiolchemical
signaling system
C3Guniprot
F-actinchemical
p130 Cas
MEK hmdbid:HMDB00474
ERKenzymeuniprot
PAK
cell proliferation
F-actinchemical
cell motility
cell maintenance
cell maintenance
RAF
CAPNuniprot
PAK
ECMuniprot
Integrin alpha
Integrin beta
ITGA
ITGB

GPML Annotator: Hs_Irinotecan_pathway_PharmGKB.gpml

CES2uniprot
CES1uniprot
Irinotecanchemical
SN-38
CYP3A4uniprot
CYP3A5uniprot
M4
APCuniprot
NPCuniprot
CYP3A4uniprot
CYP3A5uniprot
CYP3A4uniprot
CES1uniprot
CES2uniprot
SN-38
UGT1A1uniprot
UGT1A9uniprot
ABCC1uniprot
ABCC2uniprot
SN-38
CES1uniprot
CES2uniprot
ABCC1uniprot
ABCC2uniprot
ABCG2uniprot
UGT1A6uniprot
UGT1A1uniprot
UGT1A10uniprot
SN-38G
CES2uniprot
CES1uniprot
BCHEuniprot
ABCC2uniprot
UGT1A6uniprot
ABCC1uniprot
SN-38
Irinotecanchemical
Irinotecanchemical
Neutropenia
Liver Cell
Diarrhea
Intestine
Model human liver cell showing blood, bile and
intestinal compartments, indicating tissue
involvment of genes in the irinotecan pathway.

GPML Annotator: Hs_Kit-Receptor_NetPath_6.gpml

GRB7uniprot
PIK3R1uniprot
PIK3R2uniprot
SHC1uniprot
CSF2RBuniprot
GRB2uniprot
SOCS6uniprot
SOCS4uniprot
SOCS5uniprot
CISHuniprot
CLTCuniprot
CRKuniprot
SRCuniprot
PLCE1uniprot
JAK2uniprot
GRAPuniprot
PTPRUuniprot
STAP1uniprot
PRKCAuniprot
PLCG1uniprot
STAT1uniprot
STAT5Auniprot
STAT5Buniprot
PIK3CGuniprot
APSuniprot
GRB10uniprot
AKT1uniprot
TEC
LYNuniprot
DOK1uniprot
PTPN6uniprot
PTPN11uniprot
EPORuniprot
RPS6KA1uniprot
MITFuniprot
MAPK1uniprot
ABL1uniprot
INPP5D
FGRuniprot
HCKuniprot
YES1uniprot
RASA1uniprot
FESuniprot
CRKLuniprot
CBLuniprot
SOCS1uniprot
VAV1uniprot
VAV2uniprot
MATKuniprot
BADuniprot
SOS1uniprot
EP300uniprot
FYNuniprot
PRKCB1uniprot
HRASuniprot
RAF1uniprot
SPRED2uniprot
SPRED1uniprot
SH3KBP1uniprot
CBLBuniprot
TRAILR1uniprot
BTKuniprot
KITuniprot
KITLGuniprot
KITuniprot
KITLGuniprot
MAP2K1uniprot
STAT3uniprot
MPDZuniprot
DOK1uniprot
p85 complex
Molecular association
Phosphorylationchemical
Activationchemical
Inhibitionchemical
Autophosphorlation
Dephosphorylationchemical
Plasma Membrane
Cytoplasm
NucleusCHEBI:33252
CY->PM
Accession Number: NetPath_6; cellmap:6
Proteins in a complex interaction
Enzyme complex
Receptor
Ligand
Gene Symbol
Molecule in the pathway
(Protein-protein interaction)
D
PM
CY
NU
D
Reaction through unknown mechanisms/molecules
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Ubiquitination
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
Translocation
Desumoylation

GPML Annotator: Hs_Krebs-TCA_Cycle.gpml

CS
ACO2uniprot
IDH2uniprot
SDHBuniprot
FH
MDH2uniprot
MDH1uniprot
PDHA1uniprot
PDHA2uniprot
PDK1uniprot
PDK2uniprot
PDK3uniprot
PDK4uniprot
PPM2Cuniprot
PDP2uniprot
DLATuniprot
PDHBuniprot
OGDHuniprot
SDHCuniprot
SDHDuniprot
DLDuniprot
DLDuniprot
SUCLG2uniprot
SUCLG1uniprot
SUCLA2uniprot
PDHXuniprot
DLSTuniprot
IDH3Auniprot
IDH3Buniprot
PC
SDHAuniprot
IDH3Guniprot
Pyruvate hmdbid:HMDB00243
Acetyl-CoA hmdbid:HMDB01206uniprot
Succinate hmdbid:HMDB00254
Malate hmdbid:HMDB03256
alpha-Ketogluteratechemical
Oxaloacetate hmdbid:HMDB00223
Fumarate hmdbid:HMDB00134
Malate hmdbid:HMDB03256
Oxaloacetate hmdbid:HMDB00223
Isocitrate hmdbid:HMDB00193
Fatty Acid Synthesis
Glycolysis
Gluconeogenesischemical
Degradation of Fatty Acids
Containing an Odd Number of Carbons
Electron Transport Chain
Degradation of Fatty Acids
Containing an Even Number of Carbons
Citrate hmdbid:HMDB00094
Succinyl-CoA hmdbid:HMDB01022
Mitochondrion
Cytosol

GPML Annotator: Hs_MAPK_Cascade.gpml

SIPA1uniprot
PLCB3uniprot
RASA3uniprot
HRASuniprot
NRASuniprot
RRASuniprot
KRASuniprot
RAF1uniprot
ARAFuniprot
BRAFuniprot
MAP3K1uniprot
MAP3K2uniprot
MAP3K3uniprot
MAP2K1uniprot
MAP2K2uniprot
MAPK3uniprot
MAPK1uniprot
MBPuniprot
MAP2uniprot
ELK1uniprot
MAP2K7uniprot
MAP2K4uniprot
MAPK10uniprot
MAP2K6uniprot
MAPK14uniprot
MAP2K3uniprot
MAP2K4uniprot
JUNuniprot
MAP3K12uniprot
MAPK12uniprot
RapGAPIIchemical
GDP hmdbid:HMDB01201
Rap1GAPuniprot
Activated
GTP hmdbid:HMDB01273
G
i
G
q
and G
g
b
G
Stress Activated Pathways
p38 MAPK Pathway
Growth and Mitogenesis
Apoptosis
NucleusCHEBI:33252

GPML Annotator: Hs_MAPK_signaling_pathway_KEGG.gpml


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TMEM37uniprot
PRKCDuniprot
IL1R2uniprot
IL1R1uniprot
FASuniprot
ACVR1Cuniprot
ACVR1Buniprot
TGFBR1uniprot
TGFBR2uniprot
CD14uniprot
TNFuniprot
GADD45Auniprot
MAP4K3uniprot
MAP3K12uniprot
PPM1Buniprot
MAP2K5uniprot
MAPK7uniprot
MAP2K1uniprot
MAP2K2uniprot
MAPK1uniprot
MAPK3uniprot
MAPK4uniprot
PPP5Cuniprot
mkk3uniprot
MAP2K6uniprot
elk-1chemical
Sap1achemical
PDGFBuniprot
RASA2uniprot
MAP2K1IP1uniprot
MAPK6uniprot
nfat2/4
sap1achemical
MAPKAPK5uniprot
msk1/2
NLKuniprot
TAOK2uniprot
SITPEC
MAP3K7IP2uniprot
MAP3K7IP1uniprot
TRAF6uniprot
MAP3K6uniprot
GCKuniprot
MAP3K13uniprot
ZAKuniprot
MAP3K11uniprot
MAP4K1uniprot
MAP4K4uniprot
MAP2K7uniprot
MAP2K4uniprot
NGFBuniprot
BDNFuniprot
NTF5uniprot
NTRK1uniprot
EGFuniprot
FGF4uniprot
fgfr
EGFRuniprot
PDGFRBuniprot
GNA12uniprot
GRB2uniprot
SOS2uniprot
MRASuniprot
NRASuniprot
KRASuniprot
RASGRP1
RASGRP4
RASGRF2
PRKCGuniprot
PRKCB1uniprot
PRKCZuniprot
PRKCHuniprot
PRKCDuniprot
PRKACAuniprot
RAP1Buniprot
RAP1Auniprot
BRAFuniprot
RAF1uniprot
MOSuniprot
NF1uniprot
RASA1uniprot
PTPRRuniprot
PTPN7uniprot
PTPN5uniprot
MAP3K14uniprot
IKBKGuniprot
IKBKBenzymeuniprot
DUSP1uniprot
DUSP6uniprot
DUSP5uniprot
DUSP7uniprot
DUSP4uniprot
DUSP10uniprot
STMN1uniprot
MAPTuniprot
NFKB1uniprot
mnk1/2
PLA2G5uniprot
PLA2G10uniprot
RPS6KA3uniprot
ATF4uniprot
MYCuniprot
FOSuniprot
SRFuniprot
PPP3CCuniprot
PPP3CAuniprot
PPP3CBuniprot
PPP3R1uniprot
PPP3R2uniprot
HSPA8uniprot
HSPA1Auniprot
JUNuniprot
JUNDuniprot
ATF2uniprot
ELK1uniprot
TP53uniprot
HSPA5uniprot
MAPK8IP3uniprot
CRKuniprot
CRKLuniprot
FLNAuniprot
ARRB1uniprot
ARRB2uniprot
MAPK8uniprot
MAPK10uniprot
MAPK9uniprot
MAPK8IP1uniprot
PTPN7uniprot
PTPN5uniprot
PTPRRuniprot
PPM1Auniprot
AKT1uniprot
AKT2uniprot
AKT3uniprot
STK3uniprot
MINK1uniprot
PAK2uniprot
PAK1uniprot
MAP3K1uniprot
MEKK2/3
MAP3K8uniprot
RAC2uniprot
RAC1uniprot
CDC42uniprot
CASP6uniprot
CASP2uniprot
CASP8uniprot
CASP7uniprot
CASP9uniprot
CASP3uniprot
CASP1uniprot
TRAF2uniprot
MAPK13uniprot
MAPK12uniprot
DDIT3uniprot
MAXuniprot
MEF2Cuniprot
HSPB2uniprot
HSPB1uniprot
ATF4uniprot
CDC25Buniprot
NR4A1uniprot
MAPKAPK2uniprot
MAPK14uniprot
TAOK1uniprot
MAP3K4uniprot
MAP3K7uniprot
MAP3K5uniprot
DAXXuniprot
TGFB2uniprot
TGFB1uniprot
TGFB3uniprot
FASLGuniprot
IL1Buniprot
IL1Auniprot
Classical MAP kinase Pathway
Ca2+CHEBI:29108
DAGuniprot
LPSCHEBI:16412
DNA damage
JNK & p38 MAP kinase pathway
Serum, cytotoxic drugs, irradiation,
heatshock, reactive oxy species
LPS and other stress
Integrin-mediated
cell adhesion
cAMP hmdbid:HMDB00058
IP3
Heteromeric G-protein
Phosphatidylinositolchemical
signaling system
MAPKKKK
ERK5 pathway
Serum, EGF,
reactive oxygen species,
or Srk tyrosinkinase
downstream
PTPuniprot
MKP
p38uniprot
Proliferation, inflammation, anti-apoptosis
DNACHEBI:16991
DNACHEBI:16991
Proliferation,
differentiation
JNKenzymeuniprot
PTPuniprot
MAPKKKenzymeuniprot
MAPKKenzymeuniprot
MAPKenzymeuniprot
Transcription factors
DNACHEBI:16991
Alzheimer’s disease
Wnt signaling
DNACHEBI:16991
Apoptosis
Proliferation, differentiation,
inflammation
DNACHEBI:16991
Proliferation, differentiation
Cell
Cycle
pathway

GPML Annotator: Hs_Matrix_Metalloproteinases.gpml


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MMP2uniprot
MMP9uniprot
MMP7uniprot
MMP12uniprot
MMP20uniprot
MMP10uniprot
MMP3uniprot
MMP11uniprot
MMP19uniprot
MMP14uniprot
MMP15uniprot
MMP16uniprot
MMP17uniprot
MMP24uniprot
TIMP2uniprot
TIMP3uniprot
TIMP4uniprot
BSGuniprot
TNFuniprot
MMP26uniprot
MMP28uniprot
MMP23Auniprot
MMP25uniprot
MMP27
TCF20uniprot
MMP21uniprot
MMP1uniprot
MMP8uniprot
MMP13uniprot
TIMP1uniprot
MMP23Buniprot
Gelatinases
Collagenases
Stromelysinschemical
Membrane-type MMPs
Matrilysinenzyme
Inhibitors
Enamelysinuniprot
Other
Potential Inducers of Transcription
Metalloelastaseenzyme
Based on Vu & Werb (2000)
Matrix metalloproteinases: effectors of
development and normal physiology.
Genes Dev 14:2123-2133

GPML Annotator: Hs_Mitochondrial_fatty_acid_betaoxidation.gpml

ACADLuniprot
CPT2uniprot
ACADMuniprot
ACSL2
PECRuniprot
DCIuniprot
SCP2uniprot
EHHADHuniprot
ACADSuniprot
ACADVLuniprot
CPT1Auniprot
HADHSCuniprot
HADHAuniprot
ACSL3uniprot
ACSL4uniprot
SLC25A20uniprot
ACSL1uniprot
Long chain Acyl-CoA
Long chain Acyl-CoA
trans-chemical
3-Ketoacyl-CoAchemical
saturated
unsaturated
mitochondrial matrix
cytosol
-Enoyl-CoAchemical
Acyl-CoA (n-2)
2,4 Dienoyl-CoA
Acetyl-CoA hmdbid:HMDB01206uniprot
D
2
3-L-Hydroxyacyl-CoAchemical
Long chain acyl-carnitine
Long chain acyl-carnitine
cis-chemical
D-
-Enoyl-CoAchemical
3
Acyl-CoA dehydrogenases:
Long Chain Fatty Acid

GPML Annotator: Hs_Monoamine_GPCRs.gpml

DRD1uniprot
DRD2uniprot
DRD3uniprot
DRD5uniprot
HTR1Auniprot
HTR1Buniprot
HTR1Duniprot
HTR1Euniprot
HTR1Funiprot
HTR2Auniprot
HTR2Buniprot
HTR2Cuniprot
HTR4uniprot
HTR5Auniprot
HTR6uniprot
HTR7uniprot
ADRA1Auniprot
ADRA1Buniprot
ADRA1Duniprot
ADRA2Auniprot
ADRB1uniprot
ADRB2uniprot
ADRB3uniprot
HRH1uniprot
HRH2uniprot
CHRM1uniprot
CHRM2uniprot
CHRM3uniprot
CHRM5uniprot
DRD4uniprot
HTR5B
ADRA2Cuniprot
ADRA2Buniprot
CHRM4uniprot
Dopamine hmdbid:HMDB00073
Adrenergic
Serotonin hmdbid:HMDB00259
Gi/Go Pathway
Gq/G11 Pathway
Gs Pathway
Gs Pathway
Muscarinic
Histamine hmdbid:HMDB00870
Acetylcholine Receptors
Receptors
Receptors
Receptors
Receptors

GPML Annotator: Hs_mRNA_processing_Reactome.gpml

HNRPA1uniprot
HNRPA2B1uniprot
HNRPABuniprot
HNRPCuniprot
HNRPKuniprot
HNRPLuniprot
FUSIP1uniprot
SNRPD1uniprot
SNRPD2uniprot
SNRPEuniprot
SNRPFuniprot
SNRPGuniprot
CSTF1uniprot
CSTF2uniprot
CPSF3uniprot
CPSF1uniprot
CPSF2uniprot
CSTF2Tuniprot
PABPN1uniprot
SFRS9uniprot
LSM2uniprot
SFRS1uniprot
SFRS2uniprot
SFRS3uniprot
SFRS5uniprot
SRRM1uniprot
CLK3uniprot
CLK4uniprot
U2AF2uniprot
CDC40uniprot
SNRPNuniprot
SFRS7uniprot
SFRS6uniprot
SFRS10uniprot
POLR2Auniprot
SUPT5Huniprot
RNMTuniprot
RNGTTuniprot
NCBP1uniprot
NCBP2uniprot
METTL3uniprot
HNRPDuniprot
HNRPH1uniprot
HNRPH2uniprot
HNRPRuniprot
HNRPMuniprot
PTBP1uniprot
Rnu6
SNRP70uniprot
SNRPAuniprot
SNRPBuniprot
SMC1L1uniprot
CD2BP2uniprot
NSEP1uniprot
DHX9uniprot
SNRPD3uniprot
SFRS14uniprot
TMP21uniprot
SFRS12uniprot
SFRS16uniprot
FUSuniprot
SF4uniprot
RBM5uniprot
NUDT21uniprot
CPSF4uniprot
C20orf14uniprot
WDR57uniprot
TXNL4Auniprot
SF3B5uniprot
SFRS4uniprot
SNRPB2uniprot
SF3A3uniprot
SNRPA1uniprot
SF3A1uniprot
SF3A2uniprot
SF3B1uniprot
SF3B2uniprot
DHX38uniprot
CDC40uniprot
DNAJC8uniprot
PRPF8uniprot
PHF5Auniprot
PRPF4uniprot
PRPF4uniprot
LSM2uniprot
PRPF8uniprot
CSTF3uniprot
HEABuniprot
PAPOLAuniprot
DDX1uniprot
HRMT1L1uniprot
HRMT1L2uniprot
PCBP2uniprot
DICER1uniprot
DDX20uniprot
DHX15uniprot
DHX8uniprot
PRPF4Buniprot
NXF1uniprot
DHX16uniprot
CUGBP1uniprot
RNPC2uniprot
BRUNOL4
NONOuniprot
XRN2uniprot
SPOPuniprot
CUGBP2
PTBP2uniprot
PRPF3uniprot
FNBP3uniprot
RBM17uniprot
U2AF1uniprot
SRPK1uniprot
SRPK2uniprot
PPM1Guniprot
RNPS1uniprot
SRP54uniprot
HNRPUuniprot
SFRS8uniprot
SFPQuniprot
PSKH1uniprot
PRPF18uniprot
HNRPA3P1
RBMXuniprot
U1 snRNA
RNU2uniprot
SF3B4uniprot
SF3B3uniprot
CLK1uniprot
CLK2uniprot
LSM7uniprot
SNRPNuniprot
FUSIP1uniprot
U5-116KD
U5 snRNA
SSFA1
SSFA1
SSFA1
U4 snRNA
5 G cap
3
5
3
5
3
5
Polr2auniprot
Spt5uniprot
Rnmt (methyltransferase)
GMP hmdbid:HMDB01397uniprot
mRNA Capping
Processing of Intron-Containing Pre-mRNA
iPo
Cap Binding
Methylation of mRNA
heterogeneous nuclear ribonucleoproteins
Formation of pre-mRNPs
Internal methylation of mRNA
mRNA splicing (major pathway)
pre-mRNA
Primary RNA transcript
hnRNPs
Formation of the Spliceosomal E complex
snRNP Sm core complex
U1 snRNP
3
exon 1
exon 2
intron
GU
A
YYYY
AG
5
SR-binding sites
SR-binding sites
U1 snRNP
U2AF
65
35
RNA helicase A
U2AF
Serine/Argenine Rich Proteins(SR)
mRNA capping
Internal methylation of mRNA
Formation of pre-mRNPs
SR-proteins
Regulation of
Alternative Splicing
Additional Factors
Regulators
splicing factor SF3A
splicing factor SF3B
U2 snRNPs
SF3b14buniprot
SR-proteins
Additional Factors
RNA helicase
U2 snRNP
snRNP Sm core complex
Formation of the Spliceosomal A complex
Formation of the Spliceosomal E complex
Formation of the Spliceosomal A complex
U2 snRNP
3
A
YYYY
AG
5
exon 1
exon 2
U4/U6
U5
Formation of the Spliceosomal B complex
U4 snRNP
U6 snRNP
U5 snRNP
snRNP Sm core complex
U4:U5:U6 tri-snRNP complex
YYYY
AG
5
exon 1
exon 2
A
3
U5
Note: New participating members shown at each step
UG
U6
U2
U4
U1
Formation of the Spliceosomal C complex
Poly(A)-binding protein IIuniprot
CF II
Poly(A) polymerase alphauniprot
CF Ichemical
YYYY
AG
5
exon 2
A
3
UG
exon 1
YYYY
AG
5
A
3
exon 1
exon 2
YYYY
AG
A
5
exon 2
CstF
CFIenzymeuniprot
CF II
Poly(A)pb II
Poly(A) pol
5
3
AAAAAAA
Pi
P-
degraded
SR protein kinases
Additional SR proteins
Putative Alternative Splicing
Accessory Proteins
mRNA splice site selection
hnRNP regulators
RNAi pathway
3
exon 1
Formation of the Spliceosomal B complex
Formation of the active Spliceosomal C complex
Lariat Formation and 5’-Splice Site Cleavage
Cleavage at the 3’-Splice-Site and Exon Ligation
(1)
(2)
(2a)
(2b)
(2c)
(3)
mRNA 3’-end processing
Cleavage of mRNA at the 3’-end
mRNA polyadenylation
CPSF
CstF
right click on blue text for detailed information
5
3
AAUAAA
CA
ATP hmdbid:HMDB00538
CPSF
splicesome associated helicases
Misc.
Rngtt (capping enzyme)
SR-kinases
Kinases Phosphorylating RS domains?
P
SR-phosphatases
SR-proteins
SR protein phosphatases
SR-repressor proteins
Additional Factors

GPML Annotator: Hs_Notch_signaling_KEGG.gpml

RBPSUHLuniprot
PTCRA
HDAC2uniprot
CTBP1uniprot
CTBP2uniprot
CREBBPuniprot
GCN5L2uniprot
PCAFuniprot
DLL1uniprot
DLL3uniprot
DLL4uniprot
JAG1uniprot
JAG2uniprot
LFNGuniprot
MFNGuniprot
RFNGuniprot
NOTCH2uniprot
NOTCH3uniprot
NOTCH4uniprot
ADAM17uniprot
APH1Auniprot
APH1Buniprot
TNFuniprot
PSEN1uniprot
PSEN2uniprot
NCSTNuniprot
DVL1uniprot
DVL2uniprot
DVL3uniprot
NUMBuniprot
NUMBLuniprot
DTX1uniprot
DTX2uniprot
DTX3uniprot
DTX4
DTX31
RBP-Juniprot
MAML1uniprot
NCOR2uniprot
HES1uniprot
HES5
NOTCH1uniprot
MAML3uniprot
LOC330129
HDAC1uniprot
CIR hmdbid:HMDB00904uniprot
SKIPuniprot
NICD
co-repressor complex
DNACHEBI:16991
Notch Intracellular Domain
MAPK signaling pathway
gene expression
S2
S3
Ras/Map

GPML Annotator: Hs_Nuclear_Receptors.gpml

THRAuniprot
THRBuniprot
THRBuniprot
RARAuniprot
RARBuniprot
RARGuniprot
RARGuniprot
PPARAuniprot
PPARDuniprot
PPARGuniprot
PPARGuniprot
NR1D2uniprot
NR0B1uniprot
ROR1uniprot
RORAuniprot
RORCuniprot
NR1H2uniprot
NR1H3uniprot
VDRuniprot
HNF4Auniprot
RXRAuniprot
RXRBuniprot
RXRGuniprot
NR2C2uniprot
NR2F1uniprot
NR2F2uniprot
NR2F6uniprot
NR2E1uniprot
ESR1uniprot
ESR2uniprot
ESRRAuniprot
ESRRBuniprot
NR3C1uniprot
PGRuniprot
AR
NR4A1uniprot
NR4A2uniprot
NR5A1uniprot
NR5A2uniprot
NR1I2uniprot
NR1I3uniprot
Thyroid Receptor
Peroxisome Proliferator
Nuclear Receptor ROR
Oxysterols Receptor
Vitamin D3 Receptoruniprot
Hepatocyte Nuclear Factor
Retinoic Acid Receptor RXR
Orphan Nuclear Receptor
Nuclear receptor TLXuniprot
Coup Transcription Factor
Estrogen Receptoruniprot
Steroid Hormone Receptor
Glucocorticoid Receptoruniprot
Progesterone Receptoruniprot
Androgen Receptoruniprot
NR5 SUPERFAMILY
Steroidogenic Receptor
Orphan Receptor
NR0 SUPERFAMILY
NR1 SUPERFAMILY
NR2 SUPERFAMILY
NR3 SUPERFAMILY
NR4 SUPERFAMILY
Orphan Receptor
Orphan Nuclear
Activated Receptor
Receptor
Retinoic Acid Receptor

GPML Annotator: Hs_Nuclear_receptors_in_lipid_metabolism_and_toxicity.gpml

CYP7A1uniprot
CYP7A1uniprot
CYP7A1uniprot
CYP4A11uniprot
PPARGuniprot
PPARAuniprot
PPARDuniprot
ABCD3uniprot
ABCD2uniprot
ABCA1uniprot
ABCA1uniprot
ABCA1uniprot
ABCB4uniprot
ABCB11uniprot
ABCB1a
ABCB1uniprot
ABCC2uniprot
ABCC3uniprot
ABCG1uniprot
ABCG5uniprot
abcg6
NR1H4uniprot
NR1H3uniprot
CYP8B1uniprot
NR1I2uniprot
NR1I3uniprot
CYP4B1uniprot
RARAuniprot
RARGuniprot
CYP3A4uniprot
VDRuniprot
CYP3A4uniprot
CYP26A1uniprot
RARBuniprot
CYP2E1uniprot
CYP2C9uniprot
CYP2C9uniprot
CYP2B6uniprot
CYP2B6uniprot
CYP1A2uniprot
CYP24A1uniprot
CYP2C9uniprot
CYP3A4uniprot
CYP27B1uniprot
Right click for comments
Acetyl CoA hmdbid:HMDB01206uniprot
IsoprenoidsCHEBI:24913
Lanosterol hmdbid:HMDB01251
7-DehydroCholesterol hmdbid:HMDB00032
Cholesterol hmdbid:HMDB00067
Oxysterolchemical
Bile AcidsCHEBI:3098
1,25-Dihydroxy-Vitamins D3
Fatty AcidsCHEBI:35366
DIET
XenobioticsCHEBI:35703
DIET
Retinoic Ac
SteroidsCHEBI:35341
Gene expression

GPML Annotator: Hs_Nucleotide_GPCRs.gpml

ADORA1uniprot
ADORA2Auniprot
ADORA2Buniprot
ADORA3uniprot
P2RY1uniprot
P2RY2uniprot
P2RY5uniprot
P2RY6uniprot
LTB4Runiprot
GPR23uniprot
P2RY4uniprot
Adenosine hmdbid:HMDB00050
Adenine hmdbid:HMDB00034
Gi/Go Pathway
Gs Pathway
Gq/G11 Pathway

GPML Annotator: Hs_Nucleotide_Metabolism.gpml

PRPS1uniprot
PRPS2uniprot
DHFRuniprot
MTHFD2uniprot
ADSLuniprot
IMPDH1uniprot
ADSSuniprot
POLAuniprot
POLBuniprot
POLGuniprot
POLD1uniprot
NME2uniprot
RRM1uniprot
SATuniprot
SRMuniprot
OAZ1uniprot
HPRT1uniprot
Ribose hmdbid:HMDB00283
PRPP hmdbid:HMDB00280uniprot
SAICAR hmdbid:HMDB00797
AICAR hmdbid:HMDB03192
IMP hmdbid:HMDB00175uniprot
DNACHEBI:16991
DNA Synthesis
dNTPs
dNTPs
GMP hmdbid:HMDB01397uniprot
dNTPs
Xanthine hmdbid:HMDB00292
GMP hmdbid:HMDB01397uniprot
Guanine hmdbid:HMDB00132
Uric Acid hmdbid:HMDB00289
Adenylosuccinate hmdbid:HMDB00536
AMP hmdbid:HMDB00045uniprot
Hypoxanthine hmdbid:HMDB00157
Spermine hmdbid:HMDB01256
Adenine hmdbid:HMDB00034
Spermidine hmdbid:HMDB01257
Putrescine hmdbid:HMDB01414
Ornithine hmdbid:HMDB03374
Polyaminechemical
Synthesis
Monophasphatechemical

GPML Annotator: Hs_Ovarian_Infertility_Genes.gpml

BMPR1Buniprot
PRLRuniprot
FSHRuniprot
LHCGRuniprot
ZP3uniprot
ZP3uniprot
Fig-alpha
DMC1uniprot
ATMuniprot
MLH1uniprot
MSH5uniprot
GDF9uniprot
ZP2uniprot
SMPD1uniprot
DAZLuniprot
GJA4uniprot
GJA4uniprot
INHAuniprot
SMAD3uniprot
PGRuniprot
ESR2uniprot
VDRuniprot
NR5A1uniprot
TF2Duniprot
NCOR1uniprot
NRIP1uniprot
EGR1uniprot
CEBPBuniprot
PTGER2uniprot
CDKN1Buniprot
CCND2uniprot
CDK4uniprot
SMPD1uniprot
CYP19A1uniprot
SYNE2uniprot
Granulosa Cell
Cytoplasm
NucleusCHEBI:33252
Oocyte
NucleusCHEBI:33252
Ooplasm

GPML Annotator: Hs_Oxidative_Stress.gpml

MAOAuniprot
NFIXuniprot
NFKB1uniprot
SP1uniprot
HMOX1uniprot
GPX1uniprot
GPX3uniprot
NQO1uniprot
UGT1A6uniprot
CATuniprot
TXN2uniprot
TXNRD1uniprot
TXNRD2uniprot
GCLCuniprot
GSRuniprot
MT1Xuniprot
GSTT2uniprot
MGST1uniprot
CYP1A1uniprot
CYBAuniprot
FOSuniprot
JUNBuniprot
SOD2uniprot
SOD1uniprot
SOD3uniprot
MAPK14uniprot
MAPK10uniprot
Nrf2uniprot
XDHuniprot
antioxidant genes
Induction of
Inhibition of oxidases
TF inhibition
repression
TF activation
Immediate-early
gene induction
Reactive Oxygen SpeciesCHEBI:26523
Adaptive response
Repression of ROS-
producing systems
Activationchemical
Stress-regulated MAP kinase

GPML Annotator: Hs_p38_MAPK_signaling_pathway.gpml

MAPK14uniprot
MAPK14uniprot
MAP2K6uniprot
MAP3K9uniprot
MAP3K7uniprot
MAP3K5uniprot
MKNK1uniprot
MAPKAPK5uniprot
HSPB1uniprot
MAPKAPK2uniprot
MAPKAPK2uniprot
ATF2uniprot
RPS6KA5uniprot
MEF2Duniprot
DDIT3uniprot
ELK1uniprot
STAT1uniprot
MAXuniprot
MYCuniprot
HMGN1uniprot
CREB1uniprot
PLA2G4Auniprot
MAP2K4uniprot
MAP3K1uniprot
RAC1uniprot
CDC42uniprot
HRASuniprot
TGFBR1uniprot
TGFB2uniprot
TRADDuniprot
TRAF2uniprot
DAXXuniprot
RIPK1uniprot
SHC1uniprot
GRB2uniprot
RASGRF1uniprot
Apoptosis
Translation
?
?
?
Stress: Osmotic shock
g-radiation, Anisomycin
Right click for comments
FASL, Inflammatory
Cytokines, UV, etc.
Growth Factors, UV
Trophic Factors, etc.
DNA transcription
Cytokines Production,
Apoptosis, etc.
?
?

GPML Annotator: Hs_Pentose_Phosphate_Pathway.gpml

G6PDenzymeuniprot
PGLSuniprot
PGDuniprot
RPIAuniprot
TKTuniprot
TKTuniprot
TALDO1uniprot
RPEuniprot
Glucose-6-Phosphate hmdbid:HMDB01401
6-Phosphoglucono-delta-lactone hmdbid:HMDB01127
6-Phosphogluconate hmdbid:HMDB01316
Ribulose-5-Phosphate hmdbid:HMDB00618
Ribose-5-Phosphate hmdbid:HMDB01548
(Hexose Monophosphosphate Shunt
or Phosphogluconate Pathway)
Fructose-6-Phosphate + Erythose-4-Phosphate
Fructose-6-Phosphate hmdbid:HMDB00124
Sedoheptulose-7-Phosphate hmdbid:HMDB01068
+
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
+
Glycolysis/Gluconeogenesis
Xylulose-5-Phosphate hmdbid:HMDB00868
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
Nucleotidechemical
Biosynthesis

GPML Annotator: Hs_Peptide_GPCRs.gpml

AGTR1uniprot
ATP8A1uniprot
AGTR1uniprot
AGTR2uniprot
BDKRB2uniprot
BDKRB1uniprot
NMBRuniprot
GRPRuniprot
BRS3uniprot
CCR1uniprot
CCR2uniprot
CCR3uniprot
CCR4uniprot
CCR5uniprot
CCR6uniprot
CCR7uniprot
CCR8uniprot
CCR-9uniprot
CCR10uniprot
CCR1uniprot
CXCR6uniprot
CXCR3uniprot
CXCR4uniprot
BLR1uniprot
FY
CX3CR1uniprot
FSHRuniprot
LHCGRuniprot
TSHRuniprot
GALR1uniprot
GALR2uniprot
GALR3uniprot
EDNRAuniprot
EDNRBuniprot
CCKARuniprot
CCKBRuniprot
FPR1uniprot
FPRL1uniprot
FPRL2uniprot
C3AR1uniprot
IL8RAuniprot
IL8RBuniprot
MC1Runiprot
MC3Runiprot
MC4Runiprot
MC5Runiprot
NPY1Runiprot
NPY2Runiprot
NPY5Runiprot
NTSR1uniprot
NTSR2uniprot
OPRD1uniprot
OPRK1uniprot
OPRM1uniprot
OPRL1uniprot
GNRHRuniprot
TRHRuniprot
GHSRuniprot
TACR1uniprot
TACR2uniprot
TACR3uniprot
TAC4
SSTR1uniprot
SSTR2uniprot
SSTR3uniprot
SSTR4uniprot
SSTR5uniprot
AVPR1Auniprot
AVPR1Buniprot
AVPR2uniprot
OXTRuniprot
C5R1uniprot
MC2Runiprot
PPYR1uniprot
NPY6Runiprot
Releasing Hormone
Receptors
Opioid Receptors
Neuropeptide Y Receptorsuniprot
Neurotensin Receptors
Chemokine Receptors
Chemotactic Receptors
Angiotensin Receptors
Bombesin Receptors
Endothelin Receptors
Vasopressin and
Oxytocin hmdbid:HMDB02865uniprot
Galanin Receptors
Receptors
Glycoprotein Hormone
Receptors
Cholecystokinin/
Bradykinin Receptors
Somatostatin Receptors
Tachykinin Receptors
Gq Coupled
Gi Coupled
Gs Coupled
Gastrin Receptors
Melanocortinchemical

GPML Annotator: Hs_Prostaglandin_synthesis_regulation.gpml

PTGS1uniprot
PTGS2uniprot
ANXA3uniprot
ANXA2uniprot
ANXA1uniprot
ANXA6uniprot
ANXA4uniprot
SCGB1A1uniprot
ANXA5uniprot
ANXA8uniprot
S100A6uniprot
HSD11B1uniprot
EDNRBuniprot
EDN1uniprot
HPGDuniprot
PRLuniprot
EDNRAuniprot
HSD11B2uniprot
CYP11A1uniprot
PLA2G4Auniprot
S100A10uniprot
PTGISuniprot
PTGDSuniprot
TBXAS1uniprot
PTGDRuniprot
PTGER1uniprot
PTGER2uniprot
PTGER3uniprot
PTGER4uniprot
PTGFRuniprot
PTGIRuniprot
PGF2uniprot
PGI2 hmdbid:HMDB01335uniprot
Ca
2+
Prostaglandin H2 hmdbid:HMDB01381
TXA2 hmdbid:HMDB01452
Cortisol hmdbid:HMDB00063
PGE2 hmdbid:HMDB01220
Cell Membrane
PhospholipidsCHEBI:16247
Inactive Metabolites
Cytoplasm
PG Synthases
Cortisone hmdbid:HMDB02802
Cortisol hmdbid:HMDB00063
Arachidonic Acid hmdbid:HMDB01043
Progesterone hmdbid:HMDB01830
Gq signaling
pathway
PGF2uniprot
Annexinschemical
release
prolactinuniprot
Annexinschemical
Ca
2+
PG Synthases
PG Receptors
PG Receptors

GPML Annotator: Hs_Proteasome_Degradation.gpml

H2AFXuniprot
H2AFZuniprot
UBE1uniprot
UBE1Luniprot
UBE2Buniprot
UBE2D1uniprot
UBE2D2uniprot
UBE2D3uniprot
PSMC1uniprot
NEDD4uniprot
PSMC6uniprot
PSMD1uniprot
PSMD2uniprot
PSMD3uniprot
PSMD4uniprot
PSMC5uniprot
PSMC2uniprot
PSMC3uniprot
PSMC4uniprot
PSMA1uniprot
PSMA2uniprot
PSMB1uniprot
PSMA3uniprot
PSMA4uniprot
PSMB3uniprot
PSMB6uniprot
PSMB7uniprot
PSMB5uniprot
PSMB4uniprot
PSME1uniprot
PSME2uniprot
IFNGuniprot
PSMB9uniprot
PSMB10uniprot
PSMB8uniprot
PSME3uniprot
PSMD7uniprot
PSMD6uniprot
PSMD8uniprot
PSMD9uniprot
PSMD10uniprot
PSMD11uniprot
PSMD12uniprot
PSMD13uniprot
PSMC5uniprot
PSMA6uniprot
PSMA7uniprot
PSMA5uniprot
PSMB2uniprot
HLA-Auniprot
HLA-Buniprot
HLA-Cuniprot
HLA-Euniprot
HLA-Funiprot
HLA-Guniprot
RPN2uniprot
RPN1uniprot
UBCuniprot
PSMD5uniprot
HLA-Huniprot
HLA-J
HIST1H2ABuniprot
ATP hmdbid:HMDB00538
AMP Ubiquitin/E1 Complex
Ubiquitin/E2 Complex
E3/Protein
Proteins to be Degraded
Ubiquitin/Protein
Proteasome 26 S
(PA700) (ATP dependent)
p45 ATPase Subunit
Unfolds and Degrades
Intact Proteins
Proteasome 20S
Catalytic Core (p45)
Activators of
Degrades only Peptides
Presentation by MHC class 1
Oxidatively Damaged
Cytosolic Proteins
20S Complex
Lid subunits
Alpha subunits
Beta subunits

GPML Annotator: Hs_Regulation_of_Actin_Cytoskeleton_KEGG.gpml

EGFRuniprot
ITGA1uniprot
F2Runiprot
F2
FN1uniprot
GNA12uniprot
SOS1uniprot
GNA13uniprot
ARHGEF6uniprot
CSKuniprot
VAV1uniprot
BCAR1uniprot
CRKuniprot
PTK2uniprot
MOSuniprot
MAP2K1uniprot
MAPK1uniprot
CHRM1uniprot
GNG12uniprot
FGD1uniprot
CDC42uniprot
IQGAP1uniprot
ARHGEF1uniprot
BAIAP2uniprot
ENAHuniprot
WAS
ARPC5uniprot
ACTBuniprot
RHOAuniprot
ROCK1uniprot
GRLF1uniprot
RAC1uniprot
RAC3uniprot
RAC2uniprot
CD14uniprot
EGFuniprot
FGF1uniprot
FGF2uniprot
FGF3uniprot
FGF4uniprot
FGF5uniprot
FGF9uniprot
FGF20uniprot
PDGFBuniprot
FGF6uniprot
FGF11uniprot
FGF22uniprot
FGF7uniprot
FGF12uniprot
FGF17uniprot
FGF23uniprot
FGF8uniprot
FGF13uniprot
FGF18uniprot
FGF10uniprot
FGF21uniprot
FGFR1uniprot
FGFR3uniprot
FGFR2uniprot
FGFR4uniprot
PDGFRAuniprot
PDGFRBuniprot
SOS2uniprot
RRASuniprot
RRAS2uniprot
KRASuniprot
PIK3R4uniprot
PIK3C2Auniprot
Pik3c2b
PIK3C2Guniprot
PIK3C3uniprot
PIK3CAuniprot
PIK3CBuniprot
PIK3CDuniprot
PIK3CGuniprot
PIK3R2uniprot
PIK3R1uniprot
PIK3R3uniprot
RAF1uniprot
BRAFuniprot
MAP2K2uniprot
MAPK3uniprot
MAPK4uniprot
MAPK6uniprot
DOCK1uniprot
CHRM2uniprot
CHRM3uniprot
BDKRB2uniprot
BDKRB1uniprot
CHRM5uniprot
ROCK2uniprot
ARHGEF6uniprot
ARHGEF7uniprot
APCuniprot
Apc2uniprot
PAK1uniprot
PAK2uniprot
PAK3uniprot
PAK4uniprot
PAK6uniprot
PAK7uniprot
PFN1uniprot
WASF2uniprot
BAIAP2uniprot
ARPC5uniprot
NCKAP1uniprot
WASF1uniprot
TMSB4Xuniprot
VIL2uniprot
GIT1uniprot
RDXuniprot
SLC9A1uniprot
PIP5K2Auniprot
MSNuniprot
PIP5K1Auniprot
PIP5K1Buniprot
PIP5K2Buniprot
PIP5K1Cuniprot
PFN1uniprot
PIP5K2C
PIP5KL1
VCLuniprot
ACTN1uniprot
PPP1R12Auniprot
MYLKuniprot
PIP5K2Auniprot
LIMK1uniprot
MYL1uniprot
CFL1uniprot
MYL3uniprot
CFL2uniprot
VCLuniprot
GSNuniprot
MYH10uniprot
PIK3R5uniprot
MRASuniprot
NRASuniprot
C11orf13uniprot
INS1uniprot
INS2
FGF15uniprot
FGF14uniprot
FGF16uniprot
PDGFAuniprot
ARHGEF4uniprot
CYFIP2
C3orf10
ACTBuniprot
ACTG1uniprot
ACTG1uniprot
SSH3uniprot
SSH2uniprot
SSH1uniprot
RAC1P4
DIAP1uniprot
ACTBuniprot
ACTG1uniprot
VIL1uniprot
PXNuniprot
LOC442775
CHRM4uniprot
ABI2uniprot
DIAP3uniprot
Growth Factors
Growth Factor (GF)
RTK
RTK
RASuniprot
Rasuniprot
PI3Kuniprot
PI3Kuniprot
Bradykininuniprot
Acetylcholine hmdbid:HMDB00895
Chemotatic factor
LPSCHEBI:16412
PIP3uniprot
Actinuniprot
polymerizationchemical
Focal adhesion
assembly
PIP2uniprot
PIP2uniprot
?
MAPK Signaling
pathway
Actin polymerization
Stabilization
of actin
Lamellipodia
-p
+p
Actin polymerization
stress fiber
Integrin-mediated
cell adhesion
Actomyosinenzyme
assembly contraction
Focal complex
assembly
Integrin-mediated
cell adhesion
stress fiber
Gene Expression
Cadherin-mediated
cell adhesion
Filipodia
Chemotactic factor

GPML Annotator: Hs_Ribosomal_Proteins.gpml

RPL37Auniprot
RPL10Auniprot
RPL8uniprot
RPL3uniprot
RPL3Luniprot
RPL9uniprot
RPL12uniprot
RPLP2uniprot
RPLP1uniprot
RPL13Auniprot
RPL23uniprot
RPL27Auniprot
MRPL19uniprot
RPL17uniprot
RPL23Auniprot
RPL26uniprot
RPL35uniprot
RPL7uniprot
RPL4uniprot
RPL6uniprot
RPL7Auniprot
RPL13uniprot
RPL14uniprot
RPL15uniprot
RPL18Auniprot
RPL18uniprot
RPL19uniprot
RPL21uniprot
RPL22uniprot
RPL24uniprot
RPL27uniprot
RPL28uniprot
RPL29uniprot
RPL31uniprot
RPL32uniprot
RPL34uniprot
RPL35Auniprot
RPL36uniprot
RPL37uniprot
RPL38uniprot
RPL39uniprot
UBA52uniprot
RPL41uniprot
RPL36Auniprot
RPSAuniprot
RPS3uniprot
RPS9uniprot
RPS5uniprot
RPS15Auniprot
RPS16uniprot
RPS20uniprot
RPS14uniprot
RPS23uniprot
RPS29uniprot
RPS13uniprot
RPS11uniprot
RPS15uniprot
RPS3Auniprot
RPS4Xuniprot
RPS4Y1uniprot
RPS6uniprot
RPS7uniprot
RPS8uniprot
RPS10uniprot
RPS12uniprot
RPS17uniprot
RPS19uniprot
RPS21uniprot
RPS24uniprot
RPS25uniprot
RPS26uniprot
RPS27uniprot
RPS27Auniprot
RPS28uniprot
FAUuniprot
RPLP0uniprot
RPS6KA2uniprot
RPS6KA1uniprot
RPS6KA3uniprot
RPS6KA6uniprot
RPL11uniprot
RPL5uniprot
RPS6KB1uniprot
RPL10uniprot
RPL30uniprot
RPS2uniprot
RPS18uniprot
RPS6KB2uniprot
Large (60S) Subunit
Small (40S) Subunit

GPML Annotator: Hs_RNA_transcription_Reactome.gpml

TBPuniprot
GTF2Buniprot
TAF5uniprot
TAF6uniprot
TAF7uniprot
TAF9uniprot
ILKuniprot
TAF12uniprot
TAF13uniprot
GTF2E1uniprot
GTF2A2uniprot
GTF2F2uniprot
GTF2E2uniprot
CDK7uniprot
GTF2H1uniprot
GTF2H2uniprot
GTF2H4uniprot
ERCC3uniprot
ERCC2uniprot
POLR1Buniprot
POLR3Buniprot
POLR2Auniprot
POLR2Funiprot
POLR2Cuniprot
POLR2Euniprot
POLR2Kuniprot
POLR3Duniprot
POLR3Euniprot
POLR3Huniprot
POLR3Kuniprot
POLR1Auniprot
POLR2Iuniprot
POLR2Guniprot
POLR2Huniprot
POLR2Juniprot
POLR2Buniprot
CCNHuniprot
MNAT1uniprot
GTF2H3uniprot
Polr1euniprot
POLR1Duniprot
TATA
5
3
3
5
5
3
5
3
TATA
5
3
5
3
dsDNA
5
3
5
3
5
3
5
Primary RNA transcript
RNA polymerase IIenzyme
(mRNA, snRNPs)
RNA polymerase Ienzyme
(large ribosomal RNAs)
RNA polymerase IIIenzyme
(small stable RNAs)
cell growth
Gene Regulatory Proteins
(recognize surface DNA geometry)
TFIIDuniprot
TFIIBuniprot
Transcription Initiation Factors (TIFs)
TFIIE
TFIIA
TFIIF
TFIIDuniprot
TFIIBuniprot
TFIIH
TFIIF
TATA
TFIIF
RNA pol II
TFIIH
TFIIE
TATA Box binding
proteinCHEBI:16541
Steps 1) TBP binds TATA box
Steps 2) Association of TIFs and RNA polymerase
Steps 3) DNA melting by association with TFIIH
Steps 4) Transcription elongation by NTPs
Steps 5) RNA elongation with CDT phosphorylation
TFIIA

GPML Annotator: Hs_S1P_Signaling.gpml

SPHK1uniprot
SPHK2uniprot
ASAH1uniprot
LOC51190
EDG1uniprot
EDG5uniprot
EDG3uniprot
EDG8uniprot
PLCB1uniprot
PLCB2uniprot
PLCB3uniprot
MAPK3uniprot
MAPK1uniprot
MAPK6uniprot
MAPK4uniprot
MAPK7uniprot
MAPK12uniprot
GNAI1uniprot
GNAI2uniprot
GNAI3uniprot
AKT1uniprot
AKT2uniprot
AKT3uniprot
PIK3C2Buniprot
RACGAP1uniprot
GPCRs similar to S1P

GPML Annotator: Hs_Selenoproteins.gpml

Sephs1uniprot
Sephs2uniprot
Sp1uniprot
Sp3uniprot
Jununiprot
SBP2uniprot
eEFSecchemical
Sars2uniprot
Pstkuniprot
Cystathionine g-lyase
Scly
UGA
eEFSecchemical
GPX1uniprot
GPX2uniprot
GPX4uniprot
DIO1uniprot
SEPP1uniprot
TXNRD1uniprot
SepW
SPS2uniprot
Sep15uniprot
DIO2uniprot
DIO3uniprot
GPX3uniprot
GPX6uniprot
SelH
SelI
SelK
SelM
SEPN1uniprot
SelO
SepX1
SelS
SelT
TXNRD2uniprot
TXNRD3
SelV
Secp43chemical
Slauniprot
TXNRD3
TXNRD2uniprot
Selenbp1uniprot
Fabp1uniprot
Sarsuniprot
TXNRD1uniprot
Rpl30uniprot
SBP2uniprot
SBP2uniprot
Pouf2f1
Nfe2l2uniprot
p105uniprot
Cremuniprot
Fosuniprot
p65uniprot
MethylSelenol MeSeH
H2SeCHEBI:16503
Selenophosphate hmdbid:HMDB06407
Phosphoseryl-tRNA[ser](sec)chemical
Seryl-tRNA[ser](sec)chemical
Sec tRNA[ser]secchemical
Selenocysteyl-tRNA sec
ORGANIC Se
Diet
INORGANIC Se
SeleniteCHEBI:18212
methyl transferase
demethylationchemical
coding region
AUG
STOP
nucleusCHEBI:33252
AntioxidantCHEBI:22586
Redox
Thyroid hormone
enzymes
signalling
metabolism
Sec
synthesis
Se transport
and storage
Protein folding
Unkown
function
Selenoproteins
SeMet
Se = Selenium, SeMet = SelenoMethionine, SeC = Selcysteine, H2Se = Selenide, GSH = gluthatione, Trx = Thioredoxin
SeC
SelenateCHEBI:15075
SeMet
SeC
SeleniteCHEBI:18212
SelenateCHEBI:15075
GSH hmdbid:HMDB00125
Body proteins
TrX
SeC Biosynthesis
SeC
Selenium binding proteins
Transcription Factors
SeC

GPML Annotator: Hs_Signaling_of_Hepatocyte_Growth_Factor_Receptor_Biocarta.gpml

ITGB1uniprot
ITGA1uniprot
PTK2Buniprot
PXNuniprot
PTK2uniprot
SRCuniprot
PTENuniprot
PXNuniprot
PTK2uniprot
SRCuniprot
PTK2Buniprot
RASA1uniprot
PIK3CAuniprot
GAB1uniprot
PTPN11uniprot
GRB2uniprot
STAT3uniprot
SOS1uniprot
CRKLuniprot
CRKuniprot
DOCK1uniprot
RAPGEF1uniprot
RAP1Auniprot
RAP1Buniprot
HRASuniprot
MAPK8uniprot
MAP4K1uniprot
ELK1uniprot
RAF1uniprot
MAP2K1uniprot
MAP2K2uniprot
MAPK1uniprot
MAPK3uniprot
JUNuniprot
FOSuniprot
PAK1uniprot
Met
HGFuniprot
P
P
P
Trancription
Transcription
AP-1uniprot
Transcription
of Cox2
Anoikis
AKT Pathway
Actinuniprot
RHOuniprot
Pathway
RAC1uniprot
Pathway
CDC42uniprot
Pathway
Changes in Cytoskeleton
and Cell mobility
Extracellular
Cytoplasm
Right Click for Comments

GPML Annotator: Hs_Small_ligand_GPCRs.gpml

CNR1uniprot
CNR2uniprot
EDG1uniprot
EDG2uniprot
EDG3uniprot
EDG5uniprot
EDG6uniprot
MTNR1Auniprot
PTAFRuniprot
PTGDRuniprot
PTGER1uniprot
PTGER2uniprot
PTGER3uniprot
PTGER4uniprot
PTGFRuniprot
PTGIRuniprot
TBXA2Runiprot
MTNR1Buniprot
Mel-1C
ProstanoidsCHEBI:26347
Melatonin hmdbid:HMDB01389
Platelet Activating
Lysophosphatidicchemical
AcidCHEBI:37527
Cannabinoidchemical
Gq/G11 Pathway
Gq/G11 Pathway
Gi Pathway

GPML Annotator: Hs_Smooth_muscle_contraction.gpml

PRKAR1Buniprot
ADCY2uniprot
PRKCAuniprot
PRKCB1uniprot
PRKCC
PRKCDuniprot
PRKCGuniprot
PRKCHuniprot
PRKD1uniprot
PRKCQuniprot
PRKCZuniprot
PRKCEuniprot
PRKACBuniprot
ADCY6uniprot
ADCY8uniprot
PRKAR2Auniprot
PRKAR2Buniprot
PRKACAuniprot
ADCY9uniprot
PRKAR1Auniprot
ADCY3uniprot
ADCY5uniprot
CORINuniprot
RGS1uniprot
RGS3uniprot
RGS4uniprot
RGS5uniprot
RGS6uniprot
RGS7uniprot
RGS9uniprot
RGS10uniprot
RGS11uniprot
RGS14uniprot
RGS16uniprot
RGS17uniprot
RGS18uniprot
RGS19uniprot
RGS20uniprot
ADCY4uniprot
ADCY1uniprot
RGS2uniprot
ADCY7uniprot
GABPB2uniprot
SP1uniprot
NFKB1uniprot
ETS2uniprot
IGFBP1uniprot
IGFBP2uniprot
IGFBP4uniprot
ADMuniprot
OXTRuniprot
IGFBP6uniprot
LGR7uniprot
NOS1uniprot
CRHuniprot
IGFBP3uniprot
CRHR1uniprot
RLN1uniprot
NOS3uniprot
FOSuniprot
OXT hmdbid:HMDB02865uniprot
YWHAZuniprot
YWHAEuniprot
YWHAHuniprot
YWHAGuniprot
SFNuniprot
YWHAQuniprot
GJA1uniprot
IL1Buniprot
IL6uniprot
GNAQuniprot
CMKOR1uniprot
ADMRuniprot
OXTRuniprot
JUNuniprot
PDE4Buniprot
PDE4Duniprot
CAMK2Duniprot
YWHABuniprot
CALM1uniprot
CAMK2Buniprot
GABPAuniprot
CAMK2Auniprot
MAFFuniprot
LGR8uniprot
IGFBP5uniprot
CNN1uniprot
CNN2uniprot
MYL4uniprot
MYL2uniprot
ITPR1uniprot
GUCA2Auniprot
GUCA2Buniprot
GUCY2E
GUCY1A3uniprot
GRK5uniprot
GRK6uniprot
GNB1uniprot
GNB2uniprot
GNB3uniprot
GNB4uniprot
GNB5uniprot
GNGT1uniprot
GNG2uniprot
GNG3uniprot
GNG4uniprot
GNG7uniprot
GNG8uniprot
GNG12uniprot
GNG13uniprot
GNG5uniprot
GNG11uniprot
ATF2uniprot
ATF3uniprot
CREB3uniprot
ATF5uniprot
ATF4uniprot
ATF1uniprot
CREB1uniprot
GRK4uniprot
GNASuniprot
CALM2uniprot
PKIAuniprot
PKIBuniprot
PKIGuniprot
CALCAuniprot
RCP9
CALM3uniprot
CREBL1uniprot
ITPR2uniprot
ITPR3uniprot
DGKZuniprot
PLCD1uniprot
PLCG1uniprot
PLCG2uniprot
PLCB3uniprot
GSTO1uniprot
RYR3uniprot
ATP2A2uniprot
ARRB1uniprot
ARRB2uniprot
CACNB3uniprot
SLC8A1uniprot
EDG2uniprot
CALD1uniprot
ACTA1uniprot
ACTA2uniprot
ACTBuniprot
ACTCuniprot
ACTG1uniprot
RAMP1uniprot
RAMP2uniprot
RAMP3uniprot
CAMK2Guniprot
MYLK2uniprot
RYR1uniprot
ATP2A3uniprot
RYR2uniprot
Protein Kinase Auniprot
Protein Kinase Cuniprot
TR
TR = Transcriptional Regulation
note: see gene backpages for references
Regulators of G-protein
Signaling
IGFBP
Adenylyl Cyclases
Activation Via CRH and cAMP
PKC inhibitor Protein-1
Pathways of Myometrial Relaxation
Pathways of Myometrial Contraction
cAMP hmdbid:HMDB00058
cGMP hmdbid:HMDB01314
Predicted OT-R
Predicted Cxn43
Ets complex
Pge2chemical
NucleusCHEBI:33252
AP-1 complex
Myometrial Relaxation
Adenylyl Cyclasesenzymeuniprot
PKAenzyme
Myometrial Contraction
PKCenzymeuniprot
PKC inhibitor 1
RGS hmdbid:HMDB00131uniprot
G
bg
bg
DAGuniprot
G
Calcium Mobilization
IGFBP
TR
NO
Transcriptional
CRE-Transcription Factors
bg
G
IP3
Pip2chemical
GRK
GRK
Cell Growth
GPCR Kinaseenzyme
PKA Inhibitors
Regulators
Phospholipase-Cchemical
Camk2
IP3 Receptor
SR
IP3 Receptor
Calmodulinuniprot
Phospholipase-Cchemical
CAM-Kinase 2
beta Arrestin
beta Arrestin
beta Arrestin
Calcium Influx
+
Ca
2+
LPAuniprot
Ca
2+
Na
cAMP hmdbid:HMDB00058
MAPKenzymeuniprot
2+
Mg
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
Mlck
P
-
ATP hmdbid:HMDB00538
Pi + ADP
RAMPuniprot
RAMPuniprot
Ca++/Calmodulin
Ryr
Ryanodine Receptor (Ryr)

GPML Annotator: Hs_Statin_Pathway_PharmGKB.gpml

HMGCRuniprot
CYP7A1uniprot
SOAT1uniprot
DGAT1uniprot
LDLRuniprot
SCARB1uniprot
LRP1uniprot
LPLenzymeuniprot
LIPCuniprot
CETPuniprot
LCATenzymeuniprot
ABCA1uniprot
APOA1uniprot
APOA4uniprot
APOC1uniprot
APOEuniprot
APOC2uniprot
APOC3uniprot
TRNP
PLTPuniprot
Cell Membrane
Statin hmdbid:HMDB05007
acetylCoA hmdbid:HMDB01206uniprot
Cholesterol hmdbid:HMDB00067
Cholic Acid hmdbid:HMDB00619
Free FA
Cholesterol Ester
PhospholipidCHEBI:16247
Triglycerideschemical
Liver cell
LDL
IDL
VLDL
HDL
Cholesterol hmdbid:HMDB00067
Tissues
Plasma
Represses
Activates
Legend

GPML Annotator: Hs_Steroid_Biosynthesis.gpml


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HSD3B1uniprot
HSD3B2uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B2uniprot
HSD3B2uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
CYP17A1uniprot
Hydroxyprogesterone aldolase
CYP17A1uniprot
Hydroxyprogesterone aldolase
HSD3B1uniprot
F13Buniprot
Steroid-19-Hydroxylasechemical
Steroid-19-Hydroxylasechemical
HSD17B1uniprot
HSD17B2uniprot
HSD17B3uniprot
HSD17B4uniprot
HSD17B7uniprot
HSD3B1uniprot
HSD3B2uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
HSD3B1uniprot
Cholesterol hmdbid:HMDB00067
Pregnenolone hmdbid:HMDB00253
Progesterone hmdbid:HMDB01830
17-alpha-OH-Pregnenolonechemical
17-alpha-OH-Progesteronechemical
DHA hmdbid:HMDB00077
Androstenedione hmdbid:HMDB00053
Androstenediol hmdbid:HMDB03818
Testosterone hmdbid:HMDB02998
Dihydrotestosterone hmdbid:HMDB02961
Estrone hmdbid:HMDB01425
Estradiol hmdbid:HMDB00151
* 3-beta-OH-delta-steroid DH & Steroid isomerase =
** Estradiol-17-beta DH = DHB
To Mineralcorticoid Synthesis
To Glucocorticoid Synthesis
*
*
**
*
*

GPML Annotator: Hs_Striated_muscle_contraction.gpml

MYL4uniprot
MYL2uniprot
MYH6uniprot
MYH8uniprot
ACTA1uniprot
ACTCuniprot
TNNI1uniprot
TNNT2uniprot
TPM3uniprot
DMDuniprot
VIMuniprot
TPM2uniprot
TNNI2uniprot
TNNI3uniprot
TNNT3uniprot
TNNT1uniprot
TNNC1uniprot
TNNC2uniprot
MYL3uniprot
MYL1uniprot
MYH3uniprot
ACTN2uniprot
ACTN4uniprot
TMOD1uniprot
MYOM1uniprot
TCAPuniprot
TTNuniprot
DES
TPM4uniprot
TPM1uniprot
MYBPC3uniprot
MYBPC2uniprot
MYBPC1uniprot
ACTA2uniprot
ACTG1uniprot
MYL9uniprot
ACTN3uniprot
NEBuniprot
Myosin Light Chain
Myosin Heavy Chainuniprot
Tropomyosinuniprot
Other Structural
M Disk
Z Disk
Z Disk
Myosin Binding
A Model of Triggering of Striated Muscle
Contraction by Ca++
Troponin-Tuniprot
Troponin-Iuniprot
Troponin-Cuniprot
Actinuniprot
Actinuniprot
Myosin Binding Site
(Covered)
Ca
Ca
Myosin Head
Regulatory Proteins

GPML Annotator: Hs_Synthesis_and_Degradation_of_Ketone_Bodies_KEGG.gpml

ACAT1uniprot
HMGCS2uniprot
HMGCLuniprot
OXCT1uniprot
BDHuniprot
3-Hydroxy-butyratechemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Acetoacetyl-CoA hmdbid:HMDB01484
3-Hydroxy-3-methylglutaryl-CoA hmdbid:HMDB01375
Acetyl-CoA hmdbid:HMDB01206uniprot
Pyruvate metabolism
Fatty acid metabolism
Sterol biosynthesis
Acetoacetate hmdbid:HMDB00060
Fatty acid beta-oxidation
Glycolysis
(HMG-CoA cycle)
* pathway-regulated enzymes: HMG-CoA synthase, mt

GPML Annotator: Hs_T-Cell-Receptor_NetPath_11.gpml

TRA@
TRB@
CD3Guniprot
CD3Duniprot
CD3Euniprot
CD5uniprot
PTPN6uniprot
NCK1uniprot
SLAuniprot
SYKuniprot
CBLuniprot
PIK3R1uniprot
PIK3R2uniprot
TRAT1uniprot
LAX1uniprot
GAB2uniprot
SHC1uniprot
PRKCQuniprot
VAV1uniprot
FYBuniprot
DUSP3uniprot
PTPN3uniprot
PTPN12uniprot
MAP2K1uniprot
MAPK1uniprot
PRKD2uniprot
SIT1uniprot
PTPN11uniprot
MAP3K1uniprot
PTPRH
MAP2K2uniprot
MAPK3uniprot
VAV3uniprot
VAV2uniprot
STAT1uniprot
STAT5Auniprot
MAPK7uniprot
JAK3uniprot
SH2D3Cuniprot
BCL10uniprot
PAK1uniprot
SCAP1
SCAP2
SOS2uniprot
DBNLuniprot
ABL1uniprot
RASA1uniprot
PTPN22uniprot
CRKLuniprot
CTNNB1uniprot
CBLBuniprot
SHBuniprot
SRCuniprot
PTK2uniprot
AKT1uniprot
CD4uniprot
CD8Auniprot
SH3BP2uniprot
STAT5Buniprot
CD2uniprot
RAP1Auniprot
LYNuniprot
RAC2uniprot
CD3Zuniprot
CD3Zuniprot
FYNuniprot
ZAP70uniprot
LCKuniprot
MAP4K1uniprot
MUC1uniprot
TUBBuniprot
FCRL3
SLA2uniprot
CARD11uniprot
WASPIPuniprot
NFAM1uniprot
DEF6uniprot
WAS
GRAPuniprot
GRAP2uniprot
LCP2uniprot
ARHGDIBuniprot
CRKuniprot
DTX1uniprot
NEDD9uniprot
RAPGEF1uniprot
PSTPIP1uniprot
LATenzymeuniprot
GRB2uniprot
SOS1uniprot
PLCG1uniprot
PXNuniprot
ARHGEF7uniprot
TXKuniprot
KHDRBS1uniprot
NCLuniprot
UNC119uniprot
TUBA1uniprot
ITKuniprot
DNM2uniprot
DLG1uniprot
CREB1uniprot
CREBBPuniprot
ARHGEF6uniprot
GIT2uniprot
VASPuniprot
ENAHuniprot
EVLuniprot
CDC42uniprot
FYBuniprot
LCP2uniprot
NCK1uniprot
PTPRCuniprot
SH2D2Auniprot
WASF2uniprot
ABI1uniprot
PAG1uniprot
RASGRP2
CD2APuniprot
HOMER3uniprot
CEBPBuniprot
PPP3CBuniprot
CABIN1uniprot
NFATC2uniprot
ITPR1uniprot
YWHAQuniprot
JUNuniprot
JUNuniprot
FOSuniprot
CISHuniprot
DOCK2uniprot
RIPK2uniprot
LIME1uniprot
ACP1uniprot
LNKuniprot
STK39uniprot
HDAC7Auniprot
STAT5Auniprot
STAT5Buniprot
LIME1uniprot
HDAC7Auniprot
BRAFuniprot
PTK2Buniprot
PTPRJuniprot
CD3Euniprot
Antigen
Molecular association
Methylationchemical
Glycosylation
Autophosphorylationchemical
Demethylationchemical
Translocation
Cytoplasm
Endoplasmic reticulum
Endosome
Palmitoylationchemical
Phosphorylationchemical
CY->NU
CY->NU
CY->PM
NU->CY
D
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
Accession Number: NetPath_11
ER
CY
EN
Acetylationchemical
Deacetylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
EC
Extracellular
Golgi apparatus
GO
Mitochondrion
MT
NucleusCHEBI:33252
NU
Plasma membrane
PM

GPML Annotator: Hs_TGF-beta-Receptor_NetPath_7.gpml

TGFB1uniprot
TGFBR1uniprot
TGFBR2uniprot
SMAD2uniprot
DAB2uniprot
SMAD7uniprot
SMURF1uniprot
TGFBR3uniprot
TGFBR2uniprot
TGFB2uniprot
ARRB2uniprot
TGFB3uniprot
TGFBR1uniprot
TGFBR2uniprot
SMAD3uniprot
STRAPuniprot
SMAD6uniprot
TGFBR2uniprot
TGFBR3uniprot
TGFB1uniprot
SPARCuniprot
SDC2uniprot
CD44uniprot
AP2B1uniprot
SMAD4uniprot
ZFYVE9uniprot
DAXXuniprot
FKBP1Auniprot
FNTAuniprot
ERBB2IPuniprot
GIPC1uniprot
PIK3R1uniprot
CTNNB1uniprot
ENGuniprot
CAV1uniprot
EIF3S2uniprot
AXIN1uniprot
SNX6uniprot
VDRuniprot
PRKAR2Auniprot
PRKAR1Buniprot
TCF8uniprot
TGIFuniprot
NUP214uniprot
PIK3R2uniprot
PARD3uniprot
HGSuniprot
TGFBR1uniprot
TGFBR2uniprot
TGFBR2uniprot
TGFBR3uniprot
TGFBR2uniprot
TGFBR1uniprot
TGFB1uniprot
TGFB3uniprot
TGFB2uniprot
TGFB2uniprot
TGFBR3uniprot
TGFBR2uniprot
TGFB1uniprot
TGFBR2uniprot
TGFBR3uniprot
TGFBR3uniprot
TGFBR2uniprot
TGFB3uniprot
TGFB3uniprot
LEF1uniprot
HDAC1uniprot
MEF2Cuniprot
MEF2Auniprot
RUNX2uniprot
MYCuniprot
SP1uniprot
NUP153uniprot
SMAD2uniprot
NFYCuniprot
SNIP1uniprot
ZFHX1Buniprot
FOXH1uniprot
PCAFuniprot
EP300uniprot
CDC27uniprot
SKILuniprot
ESR1uniprot
SMAD4uniprot
SMAD3uniprot
RBX1uniprot
CUL1uniprot
DVL1uniprot
FOXO3Auniprot
TP53uniprot
TP73uniprot
SNW1uniprot
CRI2
STAMBPL1uniprot
FOXO1Auniprot
ATF2uniprot
CITED1uniprot
JUNDuniprot
FOSuniprot
RBL1uniprot
APC10uniprot
ANAPC1uniprot
ANAPC4uniprot
CDC27uniprot
CDC16uniprot
CDC23uniprot
ANAPC2uniprot
ANAPC5uniprot
ANAPC7uniprot
E2F5uniprot
HNF4Auniprot
E2F4uniprot
ANAPC1uniprot
ANAPC2uniprot
ANAPC5uniprot
ANAPC7uniprot
CDC27uniprot
CDC16uniprot
CDC23uniprot
ANAPC4uniprot
JUNuniprot
SMAD3uniprot
SKIuniprot
AR
CTCFuniprot
ATF3uniprot
ESR1uniprot
ETS1uniprot
AXIN2uniprot
MLLT7uniprot
JUNBuniprot
FOSBuniprot
TRAP1uniprot
STK11IP
STK11uniprot
SUMO1uniprot
HOXA9uniprot
DCP1Auniprot
COPS5uniprot
MAPK14uniprot
MAP3K7uniprot
SMAD7uniprot
SMURF1uniprot
YAP1uniprot
MAP2K6uniprot
MAP2K3uniprot
SMURF2uniprot
SMAD7uniprot
SMURF2uniprot
STRAPuniprot
SNX6uniprot
SNX1uniprot
SNX2uniprot
SNX4uniprot
CDK2uniprot
CCNE1uniprot
TFDP1uniprot
SMAD3uniprot
TFDP2uniprot
CDKN1Auniprot
NFYAuniprot
NFYBuniprot
FOXG1Buniprot
CREBBPuniprot
NCOA1uniprot
FZR1uniprot
RBL2uniprot
PPP2R2Auniprot
APC10uniprot
ROCK1uniprot
CDC25Auniprot
MAP3K7IP1uniprot
XPO1uniprot
HSPA8uniprot
ROCK1uniprot
RBL2uniprot
E2F4uniprot
E2F4uniprot
E2F4uniprot
RBL1uniprot
KPNB1uniprot
SMAD3uniprot
KPNB1uniprot
SMAD3uniprot
TFDP2uniprot
TFDP2uniprot
SMAD4uniprot
SMAD4uniprot
DCP1Auniprot
SMAD2uniprot
SMAD2uniprot
RB1uniprot
RB1uniprot
MAPK8uniprot
CDK6uniprot
CDK4uniprot
CCND1uniprot
PRKCDuniprot
PRKCGuniprot
PRKCB1uniprot
RB1uniprot
PIAS1uniprot
PIAS2uniprot
UBE2D2uniprot
UBE2D1uniprot
UBE2D3uniprot
SKP1Auniprot
BTRCuniprot
RBX1uniprot
CUL1uniprot
CAMK2Auniprot
CAMK2Duniprot
CAMK2Guniprot
CAMK2Buniprot
E2F5uniprot
SKP1Auniprot
CUL1uniprot
RBX1uniprot
BTRCuniprot
SMAD3uniprot
RBL1uniprot
SMAD4uniprot
SMAD3uniprot
E2F4uniprot
E2F5uniprot
TFDP1uniprot
RBL1uniprot
SMAD4uniprot
E2F4uniprot
TFDP1uniprot
SMAD3uniprot
E2F5uniprot
E2F5uniprot
E2F5uniprot
RBL1uniprot
CDC2uniprot
CCNB2uniprot
MAPK14uniprot
MAPK8uniprot
Gene Symbol
ACVRL1uniprot
NU -> CY
NU -> CY
NU
CY
CY
NU
CY
NU
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
CY
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
NU
NU
CY
NU
CY
CY
NU
NU
CY
NU
CY
CY
NU
CY
NU
NU
CY
NU
CY
NU
CY
NU
CY
CY
NU
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
Translocation
CY
Cytoplasm
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondria
NU
NucleusCHEBI:33252
PM
Plasma membrane
Accession Number: NetPath_7; cellmap:7

GPML Annotator: Hs_TGF_Beta_Signaling_Pathway.gpml

TGFB1uniprot
INHBAuniprot
BMP4uniprot
TGFBR3uniprot
ENGuniprot
TGFBR2uniprot
TGFBR1uniprot
FKBP1Auniprot
LTBP1uniprot
FSTuniprot
NOGuniprot
ITGB6uniprot
THBS1uniprot
TGFBR2uniprot
TGFBR1uniprot
ZFYVE9uniprot
SMAD1uniprot
SMAD5uniprot
SMAD9uniprot
SMAD2uniprot
SMAD3uniprot
SMAD4uniprot
IFNGuniprot
TGFB1uniprot
BMP4uniprot
TNFuniprot
EGFuniprot
STAT1uniprot
SMAD2uniprot
SMAD1uniprot
NFKB1uniprot
SMAD7uniprot
SMAD6uniprot
MAPK3uniprot
HRASuniprot
WNT1uniprot
TNFuniprot
CTNNB1uniprot
JAK1uniprot
MAPK9uniprot
SPP1uniprot
ZFHX1Buniprot
RUNX2uniprot
RUNX3uniprot
LEF1uniprot
STAT3uniprot
JUNuniprot
TFE3uniprot
FOXH1uniprot
ZNF423
EP300uniprot
CREBBPuniprot
TGIFuniprot
SKILuniprot
SKIuniprot
SERPINE1uniprot
FOSuniprot
LIFuniprot
BAMBIuniprot
ligands:
CofactorCHEBI:23357
Co-Smads
Co-smads
Repressors
CofactorsCHEBI:23357
Rsmads
R-Smads
TGFb
Accessory receptors:

GPML Annotator: Hs_TNF-alpha-NF-kB_NetPath_9.gpml

TRAF6uniprot
FLNAuniprot
PSMC3uniprot
RELuniprot
NFKB1uniprot
CYLDuniprot
IKBKGuniprot
TBK1enzymeuniprot
TBKBP1
PSMD6uniprot
TRAIPuniprot
TRPC4APuniprot
TRIAD3
TNFRSF8uniprot
CASP8AP2uniprot
HSPB1uniprot
TNFRSF1Buniprot
TNFRSF1Buniprot
TNFRSF1Auniprot
TNFRSF1Auniprot
TNFuniprot
TNFuniprot
TNFuniprot
TNFuniprot
TNFuniprot
PRKCZuniprot
RELAuniprot
PRKACAuniprot
PPP2CAuniprot
UBCH5Cuniprot
HIST3H3uniprot
UBCH5Buniprot
CASP7uniprot
MEKK2uniprot
CAPN3uniprot
CDC34uniprot
NFKBIAuniprot
TRAF2uniprot
TRADDuniprot
PSMD7uniprot
PSMD3uniprot
PSMD12uniprot
NFKB2uniprot
PSMD13uniprot
T2BP
PSMD1uniprot
RPL30uniprot
RELBuniprot
SMARCC1uniprot
CDC37uniprot
RPL6uniprot
SMARCA4uniprot
HDAC1uniprot
HDAC2uniprot
KCNQ1uniprot
KPNA3uniprot
PSMB5uniprot
FAF1uniprot
PSMC1uniprot
STAT1uniprot
FADDuniprot
PSMC2uniprot
PAPOLAuniprot
BCL3uniprot
PMLuniprot
IQGAP2uniprot
DDX3uniprot
GLG1uniprot
USP11uniprot
BCL7Auniprot
GSK3Buniprot
SMARCB1uniprot
TRAF1uniprot
TBK1enzymeuniprot
SMARCE1uniprot
COPS3uniprot
HDAC6uniprot
SMARCC2uniprot
UNC5CL
PKN1uniprot
KPNA2uniprot
KPNA6uniprot
TAB3uniprot
PIAS3uniprot
PEG3uniprot
CAV1uniprot
GTF2Iuniprot
TXLNAuniprot
MAP3K3uniprot
YWHAGuniprot
GAB1uniprot
PFDN2uniprot
YWHABuniprot
YWHAEuniprot
YWHAHuniprot
YWHAQuniprot
YWHAZuniprot
TNFAIP3uniprot
TNIP1uniprot
TNIP2
AKT2uniprot
CHUKenzymeuniprot
AKT1uniprot
SRCuniprot
RNF25uniprot
NFKB1uniprot
RELAuniprot
FBXW11uniprot
CSNK2A1uniprot
CSNK2A2uniprot
CSNK2Buniprot
RIPK1uniprot
CASP10uniprot
CASP8uniprot
TRAF3uniprot
BIRC2uniprot
BIRC3uniprot
PTK2uniprot
CFLARuniprot
CASP3uniprot
NFKBIAuniprot
CUL1uniprot
SKP1Auniprot
BTRCuniprot
G3BP2uniprot
RELAuniprot
ASE1uniprot
NFKBIBuniprot
LRPPRCuniprot
MCC
MTIF2uniprot
NKIRAS1uniprot
NKIRAS2uniprot
PDCD2uniprot
POLR1Auniprot
POLR1Buniprot
POLR1Duniprot
POLRY2H
POLR2Luniprot
IKBKBenzymeuniprot
DBC1uniprot
IKBKGuniprot
CHUKenzymeuniprot
RASAL2uniprot
PRAF1uniprot
POLR1Cuniprot
NFKBIEuniprot
NFKBIAuniprot
COMMD1uniprot
MCM5uniprot
MCM7uniprot
SUMO1uniprot
IKBKAPuniprot
HSP90AB1uniprot
ZA20D2uniprot
CREBBPuniprot
FKBP5uniprot
HSP90AA1uniprot
PTPN11uniprot
MAP3K14uniprot
FBLuniprot
RPL4uniprot
KTN1uniprot
RPL8uniprot
RPS11uniprot
RPS13uniprot
TRAF5uniprot
AZI2
IKBKEuniprot
TANKuniprot
MAP3K1uniprot
WDR68uniprot
UBE2Iuniprot
MAP3K8uniprot
MAP3K3uniprot
MAP2K5uniprot
MARK2uniprot
RPS6KA5uniprot
NFKBIZ
USP2uniprot
NSMAFuniprot
GNB2L1uniprot
NALP4uniprot
CRADDuniprot
CASP2uniprot
TNFRSF11Auniprot
AKAP8uniprot
ACTL6Auniprot
PPP1R13Luniprot
DPF2uniprot
RIPK3uniprot
RIPK2uniprot
PEBP1uniprot
NR2C2uniprot
NR2C2uniprot
MAP3K7IP1uniprot
MAP3K7IP2uniprot
ALPLuniprot
TNFRSF1Auniprot
TNFuniprot
DAPuniprot
FANCD2uniprot
BIRC2uniprot
TRAF2uniprot
RIPK1uniprot
TRADDuniprot
TNFRSF1Buniprot
BIRC3uniprot
TRAF1uniprot
TRAF2uniprot
BAG4uniprot
RPS6KB1uniprot
TRAF4uniprot
RELBuniprot
RELAuniprot
RELuniprot
TRAF4uniprot
NFKB1uniprot
Gene Symbol
Gene
Gene
Gene
Gene
NU
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
CY
EC
EN
ER
GO
MT
PM
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Ubiquitination
Inhibitionchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Activationchemical
Recruitment
Control
Translocation
Cytoplasm
Extracellular
Endosome
Endoplasmic reticulum
Golgi apparatus
CY ->NU
CY ->NU
CY ->NU
CY ->NU
CY ->NU
Receptor
Ligand
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
D
Autophosphorylationchemical
Mitochondrion
NucleusCHEBI:33252
Plasma membrane
Accession Number: NetPath_9; cellmap:9
Molecule in the pathway

GPML Annotator: Hs_Translation_Factors.gpml

EIF2B1uniprot
EIF2B2uniprot
EIF2B3uniprot
EIF2B4uniprot
EIF2B5uniprot
EIF2AK3uniprot
EIF2AK2uniprot
EIF3S1uniprot
EIF3S2uniprot
EIF3S3uniprot
EIF3S4uniprot
EIF3S5uniprot
EIF3S6uniprot
EIF3S7uniprot
EIF3S8uniprot
EIF4A1uniprot
EIF4A2uniprot
EIF4Buniprot
WBSCR1uniprot
EIF4Euniprot
SUI1uniprot
SUI1uniprot
PAIP1uniprot
EIF4EBP1uniprot
EIF4EBP2uniprot
EIF4EBP3uniprot
EEF1A2uniprot
EEF1B2uniprot
EEF1Duniprot
EEF1Guniprot
EEF2uniprot
ETF1uniprot
GSPT2
PABPC1uniprot
EIF4G1uniprot
EIF4G3uniprot
EIF2S1uniprot
EIF2S2uniprot
EIF2S3uniprot
EIF5Buniprot
EIF1AYuniprot
EIF1AXuniprot
KIAA0664uniprot
EIF3S10uniprot
EIF3S9uniprot
EIF2AK1uniprot
EIF5uniprot
EIF5Auniprot
EEF2Kenzymeuniprot
ITGB4BPuniprot
EEF1A1uniprot
AAAAAAAAAAAAAAA
m7G
AUG
mRNACHEBI:33699
Guanine Nucleotide Exchange
scanning
40S Subunit
Terminationchemical
Elongation
Initiationchemical
60S Subunit
Binds aminoacyl-tRNA
Translocation
Recruitment of 60S subunit
Recruitment of 43S
Pre-initiation Complex
43S Pre-initiation Complex
and first peptide bond
Cap Binding Complex

GPML Annotator: Hs_Triacylglyceride_Synthesis_BiGCaT.gpml

GPD1uniprot
GK
GPAMuniprot
GNPATuniprot
AGPSuniprot
AYR1uniprot
AGPAT1uniprot
AGPAT2uniprot
AGPAT3uniprot
AGPAT4uniprot
AGPAT5uniprot
PPAP2Auniprot
PPAP2Buniprot
PPAP2Cuniprot
DGAT1uniprot
GK2enzymeuniprot
DGAT2uniprot
MGAT1uniprot
MGAT2uniprot
LPLenzymeuniprot
LIPEuniprot
LIPCuniprot
LIPFuniprot
PNPLA2
MGAT3uniprot
Dihydroxyacetonephosphate hmdbid:HMDB01473
Glycerol hmdbid:HMDB00131
Glycerol-3-phosphate hmdbid:HMDB00126
Fatty Acyl CoA
See Fatty Acid Synthesis MAPP
Lysophosphatic Acidchemical
Dihydroxyacetone phosphate hmdbid:HMDB01473
Fatty acyl CoA
acyldihydroxyacetonephosphatechemical
See Fatty Acid Synthesis MAPP
Phosphatic acidchemical
Only 1 of these enzymes is needed
DiacylglycerolCHEBI:18035 CHEBI:18035
Only 1 of these enzymes is needed
Triacylglycerolchemical
Fatty Acyl CoA
MonoacylglycerolCHEBI:17408 CHEBI:17408
Degradation
Path

GPML Annotator: Hs_Tryptophane_Metabolism_KEGG.gpml

2.6.1.27
1.4.3.2
INDOuniprot
CYP2J2uniprot
ASMTuniprot
HRMT1L2uniprot
AANATenzymeuniprot
INDOuniprot
MDM2uniprot
MAOBuniprot
DDCuniprot
2.6.1.27
DDCuniprot
INDOuniprot
2.6.1.27
1.13.11.17
1.7.3.2
1.14.16.-
3.5.1.49
3.5.1.9
1.13.11.23
1.14.16.3
ACAT1uniprot
HADH2uniprot
ECHS1uniprot
GCDHuniprot
OGDHuniprot
1.2.1.32
ACMSDuniprot
HAAOuniprot
KYNUuniprot
1.14.13.9
KYNUuniprot
KYNUuniprot
TDO2uniprot
4.1.99.1
TPH1uniprot
WARSuniprot
1.13.99.3
CATuniprot
AADATuniprot
AADATuniprot
1.10.3.4
MAOBuniprot
1.13.11.-
1.5.1.-
DHCR24uniprot
1.13.11.10
1.3.1.18
1.14.99.2
1.13.12.3
DDCuniprot
MAOBuniprot
4.1.1.43
1.2.3.7
ALDH3A2uniprot
2.1.1.47
1.1.1.110
CYP7B1uniprot
AFMIDuniprot
ALDH3A2uniprot
AOX1uniprot
1.2.1.-
EDD1uniprot
HRMT1L2uniprot
HRMT1L2uniprot
MAOBuniprot
4.2.1.84
3.5.1.4
3.5.5.1
3.2.1.147
1.1.1.190
1.1.1.191
ABP1uniprot
2.1.1.49
INMTuniprot
3.5.99.5
CYP1A1uniprot
CYP1A2uniprot
CYP2A13uniprot
Cyp2a1uniprot
Cyp2a2uniprot
Cyp2c12uniprot
Cyp2d2uniprot
CYP2E1uniprot
CYP19A1uniprot
CYP1B1uniprot
CYP3A4uniprot
CYP2C18uniprot
Cyp2b15uniprot
Cyp2c39uniprot
CYP2F1uniprot
CYP4F12uniprot
HADHSCuniprot
ALDH1A2uniprot
ALDH1A1uniprot
ALDH2uniprot
Aldh1a4uniprot
ALDH9A1uniprot
ALDH1A2uniprot
ALDH1A1uniprot
Aldh1a4uniprot
ALDH2uniprot
ALDH9A1uniprot
4.1.1.-
MDM2uniprot
MDM2uniprot
UBE3Auniprot
UBE3Auniprot
RNF25uniprot
RNF25uniprot
ASMTuniprot
GCDHuniprot
Nicotinate and nicotinamide metabolism
PhenylAla, Tyr and Trp biosynthesis
Glycolysis / Gluconeogenesis
Benzoate degradation via hydroxylation
Benzoate degradation via hydroxylation
6-Hydroxykynurenatechemical
4,6-Dihydroxyquinoline hmdbid:HMDB04077
4-(2-Amino-5-hydroxyphenyl)chemical
5-HydroxykynurenamineCHEBI:28715
5-HydroxykynurenineCHEBI:2076
5-Hydroxy-N-formylkynurenineCHEBI:2065
N-AcetylisatinCHEBI:16050
N-AcetylindoxylCHEBI:15363
Indoxyl hmdbid:HMDB04094
2,3-DihydroxyindoleCHEBI:17828
2-Oxoglutarate hmdbid:HMDB00208
Oxaloacetate hmdbid:HMDB00223
5-(2’-Carboxyethyl)-4,6-dihydroxypicolinatechemical
5-(2’-Formylethyl)-4,6-dihydroxypicolinatechemical
5-(3’-Carboxy-3’-oxopropyl)chemical
5-(3’-Carboxy-3’-oxopropenyl)-4,6-dihydroxypicolinchemical
7,8-DihydroxykynurenateCHEBI:17508
7,8-Dihydro-7,8-dihydroxykynurenateCHEBI:17109
Acetyl-CoA hmdbid:HMDB01206uniprot
Kynurenate hmdbid:HMDB00715
4-(2-Aminophenyl)-2,4-dioxobutanoate hmdbid:HMDB00978
L-Kynurenine hmdbid:HMDB00183
Formylkynurenine hmdbid:HMDB01200
Indole hmdbid:HMDB00738
2-FormylaminobenzaldehydeCHEBI:18033
3-IndoleglycolaldehydeCHEBI:15976
Indole-3-acetamideCHEBI:16031
5-HydroxyindolepyruvateCHEBI:27597
5-Hydroxychemical
L-Tryptophan hmdbid:HMDB00929
C00332
C01144
C00877
C00527
2-Oxoadipate hmdbid:HMDB00225
2-Aminomuconate hmdbid:HMDB01241
2-Aminomuconate hmdbid:HMDB01241
Quinolinate hmdbid:HMDB00232
2-Amino-3-carboxymuconatechemical
3-Hydroxyanthranilate hmdbid:HMDB01476
Xanthurenicchemical
4-(2-Amino-3-hydroxyphenyl)chemical
4,8-DihydroxyquinolineCHEBI:28883
3-HydroxykynurenamineCHEBI:27421
3-Hydroxy-chemical
IsophenoxazineCHEBI:17293
2-AminophenolCHEBI:18112
Cinnavalininatechemical
L-Tryptophanyl-tRNAchemical
3-(2-Aminoethyl)chemical
5-Hydroxyindoleacetaldehyde hmdbid:HMDB04073
5-Hydroxyindoleacetate hmdbid:HMDB00763
5-Methoxytryptamine hmdbid:HMDB04095
Formyl-5-hydroxykynurenamineCHEBI:28736
N-Acetylserotonin hmdbid:HMDB01238
Melatonin hmdbid:HMDB01389
6-Hydroxymelatonin hmdbid:HMDB04081
Formyl-N-acetyl-5-chemical
IndolepyruvateCHEBI:17640
Indolelactate hmdbid:HMDB00671
3-MethylindolepyruvateCHEBI:28549
6-HydroxyindolelactateCHEBI:27524
Indole-3-acetate hmdbid:HMDB00197
Indole-3-acetaldehyde hmdbid:HMDB01190
Tryptamine hmdbid:HMDB00303
5-Methoxyindoleacetate hmdbid:HMDB04096
5-HydroxyindoleacetylglycineCHEBI:27631
Indole-3-ethanol hmdbid:HMDB03447
3-Methyldioxyindole hmdbid:HMDB04186
2-Formaminochemical
Indole-3-acetaldoximeCHEBI:28311
GlucobrassicinCHEBI:29028
3-MethoxyanthranilateCHEBI:20109
8-Methoxykynurenatechemical
Anthranilate hmdbid:HMDB01123
Anthranilate hmdbid:HMDB01123
3-IndoleacetonitrileCHEBI:17566
Formylanthranilate hmdbid:HMDB04089
N-Methylserotonin hmdbid:HMDB04369
N-Methyltryptamine hmdbid:HMDB04370
(Z)-5-Oxohex-2-enedioatechemical
methoxykynurenaminechemical
-1H-indol-5-olchemical
-L-tryptophanchemical
-2,4-dioxobutanoatechemical
benzoylacetatechemical
-2,4-dioxobutanoatechemical
-4,6-dihydroxypicolinatechemical
L-kynurenine hmdbid:HMDB00183

GPML Annotator: Hs_Unsaturated_Fatty_Acid_Beta_Oxidation_BiGCaT.gpml

HADHAuniprot
HADHBuniprot
ACADLuniprot
ACADLuniprot
HADHAuniprot
HADHBuniprot
ACADMuniprot
DECR1uniprot
DCIuniprot
DCIuniprot
Linoleoyl-CoA hmdbid:HMDB01064
cis,cis-3,6-Dodecadienoyl-CoACHEBI:28002
Acetyl-CoA hmdbid:HMDB01206uniprot
trans,cis-Lauro-2,6-dienoyl-CoACHEBI:28387
Acetyl-CoA hmdbid:HMDB01206uniprot
4-cis-dexeboyl-CoAchemical
2-trans-4-cis-decadienoyl-CoACHEBI:29119
3-trans-decenoyl-CoACHEBI:29126
trans-dec-2-enoyl-CoACHEBI:10723
See Beta Oxidation 2 MAPP

GPML Annotator: Hs_Urea_cycle_and_metabolism_of_amino_groups_KEGG.gpml

CPS1uniprot
GLUD1uniprot
NAGSuniprot
ALDH18A1uniprot
2.7.2.8
2.6.1.11
1.2.1.38
ALDH18A1uniprot
2.3.1.35
OTCenzymeuniprot
ASSuniprot
OATuniprot
PYCR1uniprot
ARG1uniprot
ODC1uniprot
SRMuniprot
SMSuniprot
ASLuniprot
3.5.1.5
1.2.1.46
1.5.99.1
GATMuniprot
6.3.4.6
3.5.1.54
3.5.1.59
3.5.2.14
3.5.4.21
3.5.3.3
GAMTuniprot
3.5.2.10
2.7.3.1
CKMuniprot
2.6.1.69
3.5.1.16
ACY1uniprot
ARG2uniprot
CKBuniprot
PYCRL
SMSuniprot
Glutamate metabolism
Ala and aspartate metabolism
Pyrimidine metabolism
Pro metabolism
Nitrogen metabolism
Amino acid metabolism
D-Arg and D-ornithine metabolism
Citrate cycle (TCA cycle)
Arginine metabolism
Purine metabolism
NH3CHEBI:16134
CarbamoylCHEBI:33100
L-Glutamate hmdbid:HMDB00148
N-Acetyl-glutamate hmdbid:HMDB01138
L-Glutamylchemical
N-Acetyl-L-glutamate hmdbid:HMDB01138
N2-Acetyl-L-ornithineCHEBI:16543
N-Acetyl-L-glutamate hmdbid:HMDB01138
L-Aspartate hmdbid:HMDB00191
L-Citrulline hmdbid:HMDB00904
L-Ornithine hmdbid:HMDB00214
(S)-1-Pyrroline-5-carboxylate hmdbid:HMDB01301
L-Glutamate-chemical
L-Proline hmdbid:HMDB00162
C03406
Spermine hmdbid:HMDB01256
Putrescine hmdbid:HMDB01414
Spermidine hmdbid:HMDB01257
Arginine hmdbid:HMDB00517
Fumarate hmdbid:HMDB00134
Urea hmdbid:HMDB00294
Formate hmdbid:HMDB00142
Formaldehyde hmdbid:HMDB01426
Urea-1-carboxylateCHEBI:15832
CO2CHEBI:16526
Sarcosine hmdbid:HMDB00271
N-MethylhydantoinCHEBI:16354
N-CarbamoylsarcosineCHEBI:15737
Creatine hmdbid:HMDB00064
Creatinine hmdbid:HMDB00562
Guanidinoacetate hmdbid:HMDB00128
creatine-P hmdbid:HMDB01511
Phosphoguanidinoacetate hmdbid:HMDB03705
5-semialdehydechemical

GPML Annotator: Hs_Wnt_NetPath_8.gpml

WNT3Auniprot
WNT1uniprot
WNT2uniprot
LRP6uniprot
WNT4uniprot
SFRP1uniprot
LRP5uniprot
AXIN1uniprot
GSK3Buniprot
LRP6uniprot
FZD8uniprot
DKK1uniprot
DVL1uniprot
ROR2uniprot
FZD5uniprot
WNT7Auniprot
FZD2uniprot
LRP1uniprot
WNT5Auniprot
ARRB2uniprot
PRKCAuniprot
PRKCB1uniprot
PRKCGuniprot
FZD7uniprot
MAGI3
FZD4uniprot
VANGL2uniprot
MAPK8uniprot
MAP3K7uniprot
HIPK2uniprot
NLKuniprot
MYBuniprot
FZD1uniprot
CXXC4
CSNK1Duniprot
FRAT1uniprot
TCF3uniprot
TCF4uniprot
PIAS4uniprot
UBL1uniprot
DVL2uniprot
RHOAuniprot
DAAM1uniprot
CSNK1Euniprot
NKD1
BRD7uniprot
DAB2uniprot
CTNNB1uniprot
EP300uniprot
FHL2uniprot
CSNK2A1uniprot
CSNK2A2uniprot
CSNK2Buniprot
APCuniprot
CSNK1A1uniprot
ARRB1uniprot
CTNNBIP1uniprot
CDC25Cuniprot
CDC2uniprot
PPP2CAuniprot
DVL3uniprot
MAP1Buniprot
SF1uniprot
CTBP1uniprot
CTBP2uniprot
PAX2uniprot
MAPK8IP1uniprot
TBPuniprot
AXIN2uniprot
SOX1uniprot
SALL1uniprot
AKT1uniprot
APCuniprot
BCL9uniprot
PIN1uniprot
CAMK2Auniprot
CAMK2Buniprot
CAMK2Guniprot
CAMK2Duniprot
JUPuniprot
RAC1uniprot
SMAD3uniprot
FZD6uniprot
CTNNB1uniprot
SFRP2uniprot
AXIN1uniprot
BTRCuniprot
AP2uniprot
ARRB2uniprot
RUNX2uniprot
MARK2uniprot
CUL1uniprot
SKP1Auniprot
SMAD4uniprot
TAX1BP3uniprot
CDH1uniprot
RUVBL1uniprot
FRAT2uniprot
DLG4uniprot
DLG2uniprot
DLG1uniprot
CTNNB1uniprot
GSK3Buniprot
DVL1uniprot
APCuniprot
LEF1uniprot
LEF1uniprot
APCuniprot
MAP3K7uniprot
APCuniprot
CDC2uniprot
SMT3H2uniprot
SENP2uniprot
CSNK2A1uniprot
CSNK2A2uniprot
DVL2uniprot
DVL1uniprot
BTRCuniprot
CCND1uniprot
CRYBB2uniprot
JUNuniprot
MAPK9uniprot
FZD4uniprot
FZD1uniprot
ANKRD6uniprot
AXIN1uniprot
SOX9uniprot
WNT1uniprot
WNT2uniprot
WNT1uniprot
WNT3Auniprot
MAPK3uniprot
MAPK1uniprot
RAF1uniprot
WNT4uniprot
AKT1uniprot
FZD1uniprot
FZD1uniprot
FZD9uniprot
WNT1uniprot
WNT1uniprot
WNT3uniprot
Molecular Association
Translocation
Phosphorylationchemical
Autophosphorylationchemical
Sumoylationchemical
Desumoylation
Activationchemical
Inhibitionchemical
Acetylationchemical
Ubiquitination
Dephosphorylationchemical
Plasma membrane
PM
Cytoplasm
CY
MT
NucleusCHEBI:33252
CY->NU
CY->NU
NU->CY
CY->NU
CY->NU
CY->NU
CY->PM
CY->PM
CY->PM
D
PM->CY
D
D
D
CY->PM
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
Enzyme Complex
(Protein-protein interaction)
Reaction through unknowm mechanisms/molecules
D
Accession Number: NetPath_8; cellmap:8
Demethylationchemical
Methylationchemical
Palmitoylationchemical
Glycosylation
Deacetylationchemical
Golgi apparatus
Endoplasmic reticulum
Complex formation
Deubiquitination
Control
Recruitment
Proteolytic cleavage
Extracellular
Mitochondrion
Endosome
EN
EC
NU
ER
GO
D
D
D
D

GPML Annotator: Hs_Wnt_signaling.gpml

TCF-1/LEF
LDLRuniprot
WNT1uniprot
WNT2uniprot
WNT2Buniprot
WNT3uniprot
WNT3Auniprot
WNT4uniprot
WNT5Auniprot
WNT5Buniprot
WNT6uniprot
WNT7Auniprot
WNT7Buniprot
WNT10Auniprot
WNT10Buniprot
WNT11uniprot
WNT16uniprot
WNT16uniprot
FZD1uniprot
FZD2uniprot
FZD10uniprot
FZD9uniprot
FZD8uniprot
FZD7uniprot
FZD6uniprot
FZD5uniprot
SFRP4uniprot
FZD3uniprot
MAPK9uniprot
MAPK10uniprot
RHOAuniprot
RAC1uniprot
DVL1uniprot
DVL2uniprot
DVL3uniprot
PRKCB1uniprot
PRKCGuniprot
PRKCDuniprot
PRKCEuniprot
PRKCIuniprot
PRKCHuniprot
PRKD1uniprot
PRKCQuniprot
PRKCZuniprot
PPP2R5Euniprot
PPP2R5Cuniprot
FRAT1uniprot
AXIN1uniprot
CSNK1Euniprot
GSK3Buniprot
APCuniprot
CTNNB1uniprot
FBXW2uniprot
PAFAH1B1uniprot
MYCuniprot
CCND1uniprot
CCND2uniprot
CCND3uniprot
FOSL1uniprot
JUNuniprot
PLAUuniprot
PRKCAuniprot
Apoptosis
Cytoskeleton
Phosphorylatedchemical
B
-Cateninchemical
P
NucleusCHEBI:33252
Transcriptional Activation
-Cateninchemical
B
Recruitment to Unknown
Ubiquitin Conjugating Enzymeenzyme
Ubiquitin Tagged
26S Proteasome Degredation
Frizzled Ligands

GPML Annotator: Mm_ACE-Inhibitor_pathway_PharmGKB.gpml

Agtuniprot
Ren1uniprot
Angiotensin Iuniprot
Ace
ACE InhibitorCHEBI:35457
Kng1uniprot
Bradykininuniprot
Ace
Nos3uniprot
Angiotensin IIuniprot
Aldosterone hmdbid:HMDB00037
Bdkrb2uniprot
Agtr2uniprot
Agtr1uniprot
Cell Membrane

GPML Annotator: Mm_Acetylcholine_Synthesis.gpml

Pdha1uniprot
Pdha2uniprot
Pemtuniprot
Chat
Ache
Chkauniprot
Pcyt1auniprot
Phosphatidylethanolaminechemical
Phosphatidylcholine hmdbid:HMDB02357
Glycerophosphocholine hmdbid:HMDB00086
Choline hmdbid:HMDB00097
Acetyl CoA hmdbid:HMDB01206uniprot
Pyruvate from Glycolysis
Acetate hmdbid:HMDB00042
Choline hmdbid:HMDB00097
Phosphorylcholine hmdbid:HMDB01565
Cytidine Diphosphate Choline hmdbid:HMDB01413
Acetylcholine hmdbid:HMDB00895
*Cytosol*chemical
*Synaptic Cleft*

GPML Annotator: Mm_Adipogenesis.gpml

Igf1uniprot
Ptgisuniprot
Pparduniprot
Creb1uniprot
Mixl1
Gh
Id3uniprot
Stat5auniprot
Stat5buniprot
Nr3c1uniprot
Ddit3uniprot
Lifuniprot
Cebpbuniprot
Cyp26a1uniprot
Cyp26b1uniprot
Rxrauniprot
Rarauniprot
Nr1h3uniprot
Lpluniprot
Fasuniprot
Rbl1uniprot
Gata3uniprot
Gata2uniprot
Pparguniprot
Tnfuniprot
Mifuniprot
Tgfb1uniprot
Serpine1uniprot
Slc2a4uniprot
Scd1uniprot
Twist1uniprot
Fabp4uniprot
Rb1uniprot
Rbl2uniprot
Nsg1uniprot
E2f1uniprot
Sp1uniprot
Hmga1uniprot
Il6uniprot
Gadd45auniprot
Gadd45buniprot
Cebpauniprot
Cebpduniprot
Bmp1uniprot
Bmp2uniprot
Bmp3uniprot
Bmp4uniprot
E2f4
Foxo1uniprot
Klf5uniprot
Foxc2uniprot
Ppargc1auniprot
Ncoa2uniprot
Pparauniprot
Stat3uniprot
Stat2uniprot
Stat1uniprot
Stat6uniprot
Socs1uniprot
Socs3uniprot
Cntfruniprot
Lifruniprot
Il6stuniprot
Ucp1uniprot
Wnt1uniprot
Smad3uniprot
Fzd1uniprot
Dvl1uniprot
Tcf1uniprot
Rxrguniprot
Frzbuniprot
Ins1uniprot
Ins2uniprot
Trib3uniprot
Prlruniprot
Cugbp1uniprot
Hif1auniprot
Klf6uniprot
Klf7uniprot
Sfrp4uniprot
Ncor1uniprot
Ncor2uniprot
Ahruniprot
Klf15uniprot
Egr2uniprot
Ebf1uniprot
Epas1uniprot
Wwtr1uniprot
Gdf10uniprot
Irs1uniprot
LOC384783
Irs3chemical
Irs4chemical
Bscl2uniprot
Lmnauniprot
Zmpste24uniprot
Lpin1uniprot
Lpin2uniprot
Lpin3uniprot
Pck1uniprot
Pck2uniprot
Dlk1uniprot
Ndnuniprot
Wnt10buniprot
Wnt5buniprot
Gata4uniprot
Ncoa1uniprot
Nr2f1uniprot
Rorauniprot
Nrip1uniprot
Plinuniprot
Lipeuniprot
Retnuniprot
Adnuniprot
Adfpuniprot
Adpnuniprot
Agtuniprot
Pbef1uniprot
Spock1uniprot
Osmuniprot
Catnbuniprot
Agrpuniprot
D10Ertd214euniprot
Lepuniprot
Mef2auniprot
Mef2buniprot
Mef2cuniprot
Mef2duniprot
Srebf1uniprot
Mbnl1uniprot
Adipoquniprot
Agpat2uniprot
Inhibitors of Preadipocyte to Adipocyte Transition
Transcription Factors/Modulators
Growth Factors/Hormones
Fully Differentiated Adipocyte Markers
Miscellaneous
Preadipocyte
Differentiated adipocyte
Adipocyte Secretory Products
Possible Lipodystrophy Genes
Insulin Action Genes

GPML Annotator: Mm_Alanine_and_aspartate_metabolism_KEGG.gpml

Pcxuniprot
2.3.1.7
2.6.1.18
Abatuniprot
6.3.2.11
3.4.13.3
4.1.1.11
4.1.1.12
Gad2uniprot
2.6.1.12
Darsuniprot
Gpt1uniprot
Agxtuniprot
6.1.1.7
5.1.1.1
6.3.4.4
Ass1uniprot
3.5.1.1
3.5.1.38
6.3.1.1
6.3.5.4
4.3.1.1
Asluniprot
4.3.2.2
2.6.1.14
3.5.1.3
1.4.3.2
1.4.3.16
1.2.1.18
2.1.3.2
Got2uniprot
6.3.5.6
Darsuniprot
6.1.1.22
1.4.3.1
1.4.3.15
3.5.1.7
5.1.1.13
Aspauniprot
Gad1uniprot
Got1uniprot
Glycolysis / Gluconeogenesis
Pyrimidine metabolism
Pantothenate and CoA biosynthesis
Fatty acid metabolism
Nicotinate and nicotinamide metabolism
Reductive carboxylatechemical
Citrate cycle (TCA cycle)
Reductive carboxylate cycle (CO2 fixation)
His metabolism
Nicotinate and nicotinamide metabolism
Gly, Ser and Thr metabolism
Lys biosynthesis
Urea cycle and metabolism of amino groups
Arg and Pro metabolism
beta-Ala metabolism
Selenoamino acid metabolism
Cyanoamino acid metabolism
D-Ala metabolism
Pyruvate hmdbid:HMDB00243
O-Acetylcarnitine hmdbid:HMDB00201
Acetyl-CoA hmdbid:HMDB01206uniprot
Carnosine hmdbid:HMDB00033
Malonate semialdehyde hmdbid:HMDB03015
L-Alanyl-tRNACHEBI:17732
ProteinCHEBI:16541
D-AlanineCHEBI:15570
L-Aspartyl-tRNA(Asp)CHEBI:29158
N-Carbamoyl-L-aspartateCHEBI:15859
L-Aspartate hmdbid:HMDB00191
L-Argininosuccinate hmdbid:HMDB00052
Adenylosuccinate hmdbid:HMDB00536
L-Asparagine hmdbid:HMDB00168
Citrate hmdbid:HMDB00094
Oxaloacetate hmdbid:HMDB00223
2-OxosuccinamateCHEBI:16327
2-Oxoglutarate hmdbid:HMDB00208
Succinate hmdbid:HMDB00254
Fumarate hmdbid:HMDB00134
Malate hmdbid:HMDB03256
L-Aspartyl-chemical
L-Asparaginyl-tRNA(Asn)CHEBI:29265
D-AspartateCHEBI:29994
N-Acetyl-L-aspartateCHEBI:16953
cycle (CO2 fixation)
tRNA(Asn)CHEBI:29172
b-Alanine hmdbid:HMDB00056
L-Alanine hmdbid:HMDB00161

GPML Annotator: Mm_Alpha6-Beta4-Integrin_NetPath_1.gpml

Rhoauniprot
Rtknuniprot
Itgb4uniprot
Fynuniprot
Clca3
Ptk2uniprot
Itga6uniprot
Rpsauniprot
Vimuniprot
Clca5
Grb2uniprot
DSTuniprot
Erbb2ipuniprot
Erbb2uniprot
PIK3R1uniprot
Pik3r2uniprot
Pik3r3uniprot
Pik3cauniprot
Pik3cbuniprot
Pik3cguniprot
Pik3cduniprot
Col17a1uniprot
Shc1uniprot
Mst1runiprot
Sfnuniprot
Lama1uniprot
Lamb1-1uniprot
Lamc1uniprot
Lama5uniprot
Lamb2uniprot
Lama2uniprot
Lamc1uniprot
Lamb1-1uniprot
Lama5uniprot
Lamc1uniprot
Lamc1uniprot
Lamb1-1uniprot
Lama2uniprot
Lama3uniprot
Lamb3uniprot
Lamc2uniprot
Pak1uniprot
Rac1uniprot
Plec1uniprot
Cd151uniprot
Irs2uniprot
Irs1uniprot
Egfruniprot
Ar
Trp73
Abl1uniprot
Ywhabuniprot
Ywhaeuniprot
Ywhahuniprot
Ywhaquniprot
Ywhazuniprot
Yes1uniprot
Dsp
Met
Eif4ebp1uniprot
Eif4euniprot
Itgb4bpuniprot
Lamc1uniprot
Lamb2uniprot
Ntn1uniprot
Akt1uniprot
Casp3uniprot
Bad
Prkcauniprot
Frap1uniprot
Prkcduniprot
Mmp7uniprot
Srcuniprot
Rhoauniprot
Smad2uniprot
Smad2uniprot
Smad3uniprot
Smad3uniprot
Itgb4bpuniprot
Cdkn1auniprot
Itga6uniprot
Itgb4uniprot
Itgb4uniprot
Itga6uniprot
Itgb4uniprot
Itga6uniprot
Itgb4uniprot
Itga6uniprot
Itgb4uniprot
Itga6uniprot
Laminin 1
Laminin 2
Laminin 11
Laminin 4
Laminin 10
CY->PM
CY->NU
CY->NU
CY->NU
D
D
D
Molecular Association
Deacetylationchemical
Autophosphorylationchemical
D
Translocation
Plasma membrane
Cytoplasm
NucleusCHEBI:33252
Inhibitionchemical
Ligand
Receptor
Gene Symbol
Molecule in the pathway
Activationchemical
Acetylationchemical
Accession Number: NetPath_1; cellmap:1
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
PM
CY
NU
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Phosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
D
D
D
D
D
Laminin 5

GPML Annotator: Mm_Androgen-Receptor_NetPath_2.gpml

Ar
HSPA1Auniprot
Stub1uniprot
Cdc37uniprot
Cdc25buniprot
RASuniprot
Raf1uniprot
Map2k1uniprot
Ar
Ar
Ar
Cdk9uniprot
Ctnnb1uniprot
Cav1uniprot
Crebbpuniprot
Hdac1uniprot
Sviluniprot
Cdk7uniprot
Ccnhuniprot
Gtf2h1uniprot
Ctdp1uniprot
Gtf2f1uniprot
Gtf2f2uniprot
Ncoa2uniprot
Ncoa1uniprot
Psmc3ip
Nr2c2uniprot
Ncoa3uniprot
Fhl2uniprot
FLNAuniprot
FLNAuniprot
Aesuniprot
Bag1uniprot
Brca1uniprot
Ccne1uniprot
Ccnd1uniprot
Jununiprot
Calruniprot
Cox5buniprot
Runx2uniprot
RUNX1uniprot
Ar
Slc25a4uniprot
Atf2uniprot
Tmf1
NCOA4uniprot
Tgfb1i1
Rnf14uniprot
Ran
Rad54l2
Pias2uniprot
Uxtuniprot
Egfruniprot
Ube3auniprot
Esr1uniprot
Pa2g4uniprot
Etv5uniprot
Mmp1auniprot
LOC622339
Nr3c1uniprot
Srcuniprot
Mapk1uniprot
Il6stuniprot
Myst2uniprot
Nsd1uniprot
Pou2f1uniprot
Pou2f2uniprot
Akt1uniprot
Mdm2uniprot
PLAGL1uniprot
Rac3uniprot
Rb1uniprot
Rb1uniprot
Relauniprot
Ranbp9uniprot
Nrip1uniprot
Rnf4uniprot
Zfp278
Pxnuniprot
Spdefuniprot
Prmt1uniprot
Prmt1uniprot
Pnrc1uniprot
Pias4uniprot
Pias1uniprot
Pias3uniprot
Stat3uniprot
Pnrc1uniprot
Smad3uniprot
Smad4uniprot
SRYuniprot
Nr0b2uniprot
Sp1uniprot
Ncor2uniprot
Tgifuniprot
Ube2iuniprot
Sin3auniprot
Rchy1uniprot
Rchy1uniprot
Hipk3uniprot
Pak6
Pcafchemical
Akt1uniprot
2900057D21Rik
Htatipuniprot
Ep300
Senp1uniprot
Cdc2auniprot
Mapk1uniprot
Jununiprot
Nr3c1uniprot
Il6uniprot
Ptenuniprot
Esr2uniprot
Nr0b1uniprot
Igf1uniprot
GHBPuniprot
Ghruniprot
Trp53uniprot
Casp1uniprot
Casp3uniprot
Casp7uniprot
Casp8uniprot
Hmgb2uniprot
Hmgb1uniprot
Ywhahuniprot
Nr5a1uniprot
Esr1uniprot
Androgen (T/DHT)
P
P
P
P
Molecular association
Proteolytic Cleavage
DeSumoylation
Phosphorylationchemical
Activationchemical
Ubiquitination
Translocation
Inhibitionchemical
Enzyme complex
Androgen Independent
P
CY
NU
CY->NU
CY->NU
CY->NU
CY->NU
Gene Symbol
Molecule in the pathway
Cytoplasm
NucleusCHEBI:33252
D
D
D
D
(Protein-protein interaction)
Reactions through unknown mechanisms/molecules
D
Receptor
Ligand
Proteins in a complex interaction
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Sumoylationchemical
Deubiquitination
Recruitment
Control
EC
EN
Extracellular
Endosome
ER
Endoplasmic reticulum
GO
Golgi appparatus
MT
Mitochondrion
PM
Plasma membrane
Androgen Independent
Accession Number: NetPath_2; cellmap:2

GPML Annotator: Mm_Apoptosis.gpml

Traddchemical
Tnfsf10uniprot
Tnfrsf1auniprot
Tnfuniprot
Tnfrsf1buniprot
Traf1uniprot
Traf2uniprot
Map3k1uniprot
Map2k4uniprot
Mapk10uniprot
Fadduniprot
Ripk1uniprot
Birc2uniprot
Birc3uniprot
Birc4uniprot
Casp6uniprot
Casp7uniprot
Casp3uniprot
Casp2uniprot
Bcl2uniprot
Ikbkguniprot
Bcl2l1uniprot
Gzmbuniprot
Prf1uniprot
Fasluniprot
Bak1uniprot
Bid
Baxuniprot
Mycuniprot
Trp53uniprot
Mdm2uniprot
Relauniprot
Nfkb1uniprot
Apaf1uniprot
Casp9
Cycsuniprot
Cyctuniprot
Nfkbiauniprot
Jununiprot
Bcl2l11uniprot
Bid3uniprot
Bnip3luniprot
Casp10
Dffbuniprot
Dffauniprot
Hellsuniprot
Bad
Casp1uniprot
Casp11uniprot
Casp11uniprot
Casp8uniprot
Traf3uniprot
Tnfrsf25
Ltauniprot
Tnfrsf10buniprot
Tnfrsf21uniprot
Ikbkbuniprot
Chukuniprot
Nfkbibuniprot
Nfkbieuniprot
Nfkbiauniprot
Nfkbibuniprot
Nfkbieuniprot
Nfkb1uniprot
Relauniprot
Birc5uniprot
Trp73
Trp63uniprot
Irf1uniprot
Irf2uniprot
Irf3uniprot
Irf4uniprot
Irf5uniprot
Irf6uniprot
Irf7uniprot
Bokuniprot
Pmaip1chemical
Bbc3uniprot
Bcl2l2uniprot
Cradduniprot
Cflaruniprot
Ripk1uniprot
Traddchemical
Diablouniprot
Cdkn2auniprot
Mcl1uniprot
Tnfrsf1auniprot
Bad
Fasuniprot
Pik3r1uniprot
Akt1uniprot
Igf1runiprot
Igf2uniprot
Igf1uniprot
Apoptosis
Activator of Cell Death
Inhibitor of Cell Death
Fas Liganduniprot
DNA Fragmentation
e
e
Mitochondrion
p
p
degredation
b
Caspuniprot
b
p53 Related
Interferon regulatory factors
b
IGF1R signaling pathway

GPML Annotator: Mm_B_Cell_Receptor_NetPath_12.gpml

Cd79buniprot
Blkuniprot
Fynuniprot
Lyn
Sykuniprot
Blnkuniprot
Map4k1uniprot
Cd5uniprot
Ptk2uniprot
Ptpn6uniprot
Hcls1uniprot
Was
Actr2uniprot
Actr3uniprot
Arpc1buniprot
Arpc2uniprot
Arpc3uniprot
Arpc4uniprot
Arpc5uniprot
Hcls1uniprot
Grb2uniprot
Grb2uniprot
Sos1uniprot
Nck1
Vav1uniprot
Plcg1uniprot
Cr2uniprot
Cd19uniprot
Cd81uniprot
Plcg2uniprot
PIK3R1uniprot
Pik3r2uniprot
Pik3ap1
Mapk1uniprot
Elk1uniprot
Btkuniprot
Cbluniprot
Shc1uniprot
Lckuniprot
Bcar1uniprot
Nedd9uniprot
Ptk2buniprot
Hckuniprot
Crkluniprot
BANK1uniprot
Itpr2uniprot
PILRBuniprot
Ptpn11uniprot
Cd22uniprot
Casp9
Casp7uniprot
Cblbuniprot
Sh3bp2uniprot
Vav2uniprot
Prkcmuniprot
Ptpn6uniprot
Itkuniprot
Tecuniprot
Crkuniprot
Rapgef1chemical
Lcp2uniprot
AI586015
Dok1uniprot
Ptpn18uniprot
Pip5k1buniprot
Pip5k2auniprot
Pip5k1auniprot
Pip5k2buniprot
Pip5k1cuniprot
Pip5k2c
Pip5k1auniprot
Pip5k2buniprot
Rps6ka1uniprot
Mapk3uniprot
Rasa1uniprot
Rps6ka1uniprot
Prkcduniprot
Prkcduniprot
Creb1uniprot
Lat2uniprot
Pdpk1uniprot
Akt1uniprot
Akt1uniprot
Gsk3auniprot
Rap2auniprot
Foxo1uniprot
Inpp5d
Dok3uniprot
Mapk8uniprot
Fcgr2buniprot
Hcls1uniprot
RPS6KB1uniprot
RPS6uniprot
Gab2uniprot
Jununiprot
Atf2uniprot
Mapk14uniprot
Bcl6uniprot
Mapkapk2uniprot
CDK2uniprot
Rb1uniprot
Cdk4uniprot
Cdk6uniprot
Ctnnb1uniprot
Ctnnb1uniprot
Gsk3buniprot
Ikbkbuniprot
Chukuniprot
Nfkbiauniprot
Relauniprot
Reluniprot
Relauniprot
Reluniprot
Prkcb1uniprot
Cd72uniprot
Atp2b4uniprot
Nfatc2uniprot
Nfatc3uniprot
Nfatc2uniprot
Nfatc3uniprot
Ppp3cauniprot
Ppp3cbuniprot
Apsuniprot
Gtf2iuniprot
Plekha1uniprot
Plekha2uniprot
Dapp1uniprot
Plekha2uniprot
Plekha1uniprot
Lime1uniprot
Cskuniprot
Card11
Bcl10uniprot
Map3k7uniprot
Ikbkguniprot
Ccnd2uniprot
Ccnd3uniprot
Ccne1uniprot
Ccna2uniprot
Hnrpkuniprot
Ptprcuniprot
Ppp3r1uniprot
Nfatc1uniprot
Prkcquniprot
Cdk7uniprot
Cd79auniprot
Dapp1uniprot
Hdac5uniprot
Hdac7auniprot
Hdac5uniprot
Hdac7auniprot
Cycsuniprot
Cycsuniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
Dusp4uniprot
Dusp6uniprot
Stat3uniprot
Stat1uniprot
Zap70uniprot
Bcl2l11uniprot
Mapk4uniprot
SLA2uniprot
4631426J05Rik
Cmtm3uniprot
Bcl2uniprot
IGHMuniprot
Prkcb1uniprot
Rasgrp3
BRAFuniprot
Pdk2uniprot
Baxuniprot
Baxuniprot
Rasgrp3
Gab1uniprot
Pip5k1auniprot
Pip5k2buniprot
Shc1uniprot
Prkceuniprot
Prkceuniprot
Gtf2iuniprot
Itpr1uniprot
Pik3ap1
Card11
Rapgef1chemical
Crkuniprot
Btkuniprot
Blnkuniprot
Gab1uniprot
Ptpn6uniprot
Plcg2uniprot
Inpp5d
Chukuniprot
Ikbkbuniprot
Lyn
Sykuniprot
Cd79auniprot
Lyn
Sykuniprot
Lat2uniprot
Rhoauniprot
Gene Symbol
Pik3cguniprot
Sos2uniprot
ARP2/3
Complex
Molecular association
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Translocation
Ubiquitination
Cytoplasm
NucleusCHEBI:33252
Mitochondria
CY->NU
CY->NU
CY->NU
CY->NU
CY->PM
CY->PM
CY->NU
CY->PM
CY->PM
Autophosphorylationchemical
Plasma membrane
CY->PM
PM->CY
NU->CY
NU->CY
CY->MT
CY->PM
CY->PM
CY->PM
D
Receptor
Accesion Number: NetPath_12
MA
CY->PM
CY->PM
CY->PM
CY->PM
CY->PM
CY->PM
CY->NU
CY->NU
CY->PM
CY->NU
CY->PM
CY->PM
CY->PM
PM->CY
MT->CY
D
D
D
D
D
D
D
D
D
D
D
D
D
Molecule in the pathway
Proteins in a complex interaction
Enzyme Complex
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
D
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
PM
CY
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
NU
Ligand
D

GPML Annotator: Mm_Biogenic_Amine_Synthesis.gpml

Th
Ddcuniprot
Dbhuniprot
Pnmtuniprot
Pahuniprot
Tph1uniprot
Ddcuniprot
Asmtchemical
Hdcuniprot
Ddcuniprot
Gad1uniprot
Gad2uniprot
Chat
Comtuniprot
Maoauniprot
Ache
Maoauniprot
Aanatuniprot
Tyrosine hmdbid:HMDB00158
L-DOPA hmdbid:HMDB00181
Dopamine hmdbid:HMDB00073
Norepinephrine hmdbid:HMDB00216
Epinephrine hmdbid:HMDB00068
Phenylalanine hmdbid:HMDB00159
Tryptophan hmdbid:HMDB00929
5-hydroxy-tryptophanchemical
Serotonin hmdbid:HMDB00259
Acetylserotoninchemical
Melatonin hmdbid:HMDB01389
Histidine hmdbid:HMDB00177
Histamine hmdbid:HMDB00870
Glutamate hmdbid:HMDB03339
GABA hmdbid:HMDB00112
Choline hmdbid:HMDB00097
Acetylcholine hmdbid:HMDB00895
Synthesis pathways for biogenic amines (in blue)
follow solid arrows through enzymatic steps,
while degradation steps follow dashed arrows.

GPML Annotator: Mm_Blood_Clotting_Cascade.gpml

F12uniprot
F9
F10uniprot
Serpine1uniprot
Serpinb2uniprot
F8
F8auniprot
Platuniprot
F5
Fgl2uniprot
F2
Fgauniprot
Plauuniprot
Plguniprot
Serpinf2uniprot
F13buniprot
F10uniprot
Vwfuniprot
F7
Factor XIIa
Factor XIa
Factor VIIIa
Factor IXa
Factor Xa
Factor Va
Thrombinenzymeuniprot
Fibrin Monomer
Factor XIIIa
Fibrin Polymer
Factor VIIa
+
+
Intrinsic Pathway
Extrinsic Pathway
Tissue Factor
Plasminenzyme
Fibrin
Fibrin Split Products
Thrombolysis
Tissue Injury

GPML Annotator: Mm_Calcium_regulation_in_cardiac_cells.gpml

Gnasuniprot
Gnaquniprot
Anxa6uniprot
Ryr2
Fkbp1auniprot
Plnuniprot
Calruniprot
Casq2uniprot
Adcy7uniprot
Rgs2uniprot
Rgs20uniprot
Ywhahuniprot
Prkcb1uniprot
Ywhaquniprot
Ywhaguniprot
Ywhaeuniprot
Ywhazuniprot
Rgs19uniprot
Sfnuniprot
Prkchuniprot
Prkar2auniprot
Adcy8uniprot
Adcy6uniprot
Prkacbuniprot
Prkceuniprot
Prkczuniprot
Prkcduniprot
Prkcmuniprot
Adcy9uniprot
Prkciuniprot
Prkccuniprot
Prkcauniprot
Adcy2uniprot
Prkar1buniprot
Prkcquniprot
Rgs4uniprot
Rgs17uniprot
Rgs16uniprot
Rgs14uniprot
Rgs11uniprot
Rgs10uniprot
Rgs9uniprot
Rgs7uniprot
Prkar2buniprot
Rgs5uniprot
Prkacauniprot
Rgs3uniprot
Rgs1uniprot
Adcy3uniprot
Prkar1auniprot
Rgs18uniprot
Rgs6uniprot
Gng2uniprot
Gngt1uniprot
Gnb5uniprot
Gnb4uniprot
Gnb3uniprot
Gnb2uniprot
Gnb1uniprot
Gprk6uniprot
Plcb3uniprot
Gng4uniprot
Gprk2luniprot
Gprk5uniprot
Pkibuniprot
Calm2uniprot
Pkiguniprot
Pkiauniprot
Gng3uniprot
Gng11uniprot
Gng5uniprot
Gng13uniprot
Gng12uniprot
Gng8uniprot
Gng7uniprot
Ywhabuniprot
Plcb3uniprot
Arrb2uniprot
Arrb1uniprot
Calm1uniprot
Ryr3
Itpr1uniprot
Itpr2uniprot
Itpr3uniprot
Calm3uniprot
Gna11uniprot
Ryr1
Casq1uniprot
Atp2a3uniprot
Camk2auniprot
Camk2buniprot
Camk2guniprot
Camk2duniprot
Camk1uniprot
Camk4uniprot
Cacnb3uniprot
Cacnb1uniprot
Atp2b3uniprot
Atp2b2uniprot
Atp2b1uniprot
Slc8a3uniprot
Slc8a1uniprot
Atp1a4uniprot
Atp1b1uniprot
Atp1b2uniprot
Atp1b3uniprot
Fxyd2uniprot
Chrm1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Chrm5uniprot
Cacna1cuniprot
Cacna1duniprot
Cacna1euniprot
Cacna1suniprot
Cacna1auniprot
Cacna1buniprot
Adrb1uniprot
Adrb3uniprot
Adrb2uniprot
Adra1auniprot
Adra1buniprot
Adra1duniprot
Gja1uniprot
Gja3uniprot
Gja4uniprot
Gja5uniprot
Gja6uniprot
Gja7uniprot
Gja8uniprot
Gja9uniprot
Gja10uniprot
Gja12uniprot
Gjb1uniprot
Gjb2uniprot
Gjb3uniprot
Gjb4uniprot
Gjb5uniprot
Gjb6uniprot
Kcnj3uniprot
Kcnj5uniprot
Kcnb1uniprot
Gnai1uniprot
Gnai2uniprot
Gnai3uniprot
Gnao1uniprot
Gnazuniprot
Adcy1uniprot
Atp2a2uniprot
Adcy5uniprot
Adcy4uniprot
cAMP hmdbid:HMDB00058
Ca2+CHEBI:29108
Na+CHEBI:29101
Na+CHEBI:29101
P
FKBP12uniprot
P
Ca
IP3
DAGuniprot
PIP2uniprot
SR
GRK
Calmodulinuniprot
PKA Inhibitors
beta Arrestin
Protein Kinase Auniprot
Signaling
PKC inhibitor Protein-1
Adenylyl Cyclasesenzymeuniprot
G
Regulators of G-protein
bg
Protein Kinase Cuniprot
Protein Kinase Auniprot
Na2+
Repolarization
Cytosolic Cachemical
2+
Ca
2+
Calreticulin-Ca
Calsequestrin C-Cachemical
Calsequestrin S-Cachemical
2+
2+
2+
2+
Cytosolic Cachemical
ATP hmdbid:HMDB00538
ADP + Pi
Phopholambanchemical
ADP + Pi
2+
Cytosolic Cachemical
Acetylcholine hmdbid:HMDB00895
Epinephrine hmdbid:HMDB00068
Epinephrine hmdbid:HMDB00068
IP4
IP3 Receptors
Ca
2+
2+
Cytosol
CaM kinaseenzyme
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
CaM kinaseenzyme
K+
Ca
2+
ATP hmdbid:HMDB00538
Dihydropyridine-Sensitive
Membrane
Depolarization
Ca
2+
Ca
2+
Na+/Ca2+ Exchanger
Na+/K+ ATPase
ATP hmdbid:HMDB00538
Adrenergic Receptor
b
L-Type Ca2+ Channel
M1 Muscarinic Receptor
a
Adrenergic Receptor
Cyclasesuniprot
Adenylylchemical
G
b
G
g
G
bg
IP3 Receptors
Connexin
Connexin
Gap Junctions (Connexins)
Ca
2+
Ca
2+
b
arrestin/GRK
b
arrestin/GRK
G alpha i/o/z
K+
K+
G
bg
G alpha i/o/z

GPML Annotator: Mm_CAR_RET_Metabolism.gpml

Bcmo1uniprot
Lratuniprot
Retsatuniprot
Adh1uniprot
Adh5uniprot
Adh4uniprot
Rdh7uniprot
Rdh5chemical
Dhrs3uniprot
Rbp1uniprot
Rbp2uniprot
Rbp7uniprot
Rbp4uniprot
Crabp1uniprot
Crabp2uniprot
Bcdo2uniprot
ARATuniprot
Aldh1a1uniprot
Aldh1a2uniprot
Raldh3uniprot
Aldh8a1
Cyp26a1uniprot
Rdh7uniprot
Rdh16chemical
Rdh11uniprot
Aldh1a1uniprot
Aldh1a2uniprot
Aldh8a1
RARa
RARb
RARg
RXRa
RXRb
RXRg
Cyp26b1uniprot
Cyp2e1uniprot
Ugt1a7c
Sult1a1uniprot
Sult2b1uniprot
Scarb1uniprot
Cd36uniprot
Bcmo1uniprot
Lratuniprot
Lpluniprot
Scarb1uniprot
Abcg5uniprot
Abcg8uniprot
Npc1l1uniprot
all-trans ROL
9-cis ROL
13,14 dehydro ROL
RE
beta-carotene hmdbid:HMDB00561
beta-10'-apocarotenalchemical
all-trans RAL
9-cis RAL
13,14 dehydro RAL
all-trans RA
9-cis RA
13,14 dehydro RA
?
5
5
1,2,3
1,2,3,4,6
7,8,9
ROL=retinol; RAL=retinaldehyde
ROL-binding proteins
RA-binding proteins
NucleusCHEBI:33252
Nuclear receptors
all-trans-4-oxo dehydro RA
Cytochrome P450 family
all-trans-4-oxo RA
?
PPAR pathways
RA = retinoic acid, RE = retinyl ester
beta-carotene hmdbid:HMDB00561
Liver
Enterocyte
beta-carotene hmdbid:HMDB00561
beta-carotene hmdbid:HMDB00561
RALuniprot
ROLuniprot
RE
RE + dietary lipids
ROLuniprot
chylomicron
RE + dietary lipids
RE + dietary lipids
?
Blood
?

GPML Annotator: Mm_Carotenoid_retinol_metabolism_liver.gpml

Bcmo1uniprot
Lratuniprot
Retsatuniprot
Adh1uniprot
Adh5uniprot
Adh4uniprot
Rdh7uniprot
Rdh5chemical
Dhrs3uniprot
Rbp1uniprot
Rbp2uniprot
Rbp7uniprot
Rbp4uniprot
Crabp1uniprot
Crabp2uniprot
Scarb1uniprot
Bcdo2uniprot
ARATuniprot
Aldh1a1uniprot
Aldh1a2uniprot
Raldh3uniprot
Aldh8a1
Cyp26a1uniprot
Rdh7uniprot
Rdh16chemical
Rdh11uniprot
Aldh1a1uniprot
Aldh1a2uniprot
Aldh8a1
dietary CAR
all-trans ROL
9-cis ROL
13,14 dehydro ROL
retinyl ester hmdbid:HMDB03598
beta-carotene hmdbid:HMDB00561
beta-10'-apocarotenalchemical
all-trans RAL
9-cis RAL
13,14 dehydro RAL
all-trans RA
9-cis RA
13,14 dehydro RA
?
?
5
5
1,2,3
1,2,3,4,6
7,8,9
ROL=retinol; RAL=retinaldehyde; RA=retinoic acid
ROL-binding proteins
RA-binding proteins
NucleusCHEBI:33252
RA-receptors
all-trans-4-oxo dehydro RA
CYP26 Gene family
all-trans-4-oxo RA

GPML Annotator: Mm_Carotenoid_retinol_metabolism_RPE.gpml

Lratuniprot
Rpe65uniprot
Rdh5chemical
Retsatuniprot
Adh1uniprot
Adh5uniprot
Rdh16chemical
Rdh7uniprot
Rdh5chemical
Rdh12uniprot
Dhrs3uniprot
Rbp1uniprot
Rbp2uniprot
Rbp4uniprot
Crabp1uniprot
Crabp2uniprot
ARATuniprot
Aldh1a2uniprot
Aldh1a3uniprot
Aldh8a1
Dhrs3uniprot
Rdh7uniprot
Rlbp1uniprot
Cyp26a1uniprot
Aldh1a2uniprot
Aldh1a3uniprot
Aldh8a1
all-trans ROL
9-cis ROL
all-trans dehydro ROL
retinyl ester hmdbid:HMDB03598
11-cis ROL
11-cis RAL
all-trans RAL
9-cis RAL
all-trans dehydro RAL
all-trans RA
9-cis RA
all-trans dehydro RA
?
5
5
5
5
1,2,3
1,2,3,4,6
7,8,9
ROL=retinol; RAL=retinaldehyde; RA=retinoic acid
ROL-binding proteins
RAL-binding proteins
11-cis binding protein
all-trans 4-oxo RA
all-trans 4-oxo dehydro RA
CYP26 Gene family
NucleusCHEBI:33252
RA-receptors

GPML Annotator: Mm_Cell_Cycle-G1_to_S_control_Reactome.gpml

Cdk4uniprot
Cdk6uniprot
Ccnd1uniprot
Ccnd2uniprot
Ccnd3uniprot
CyclinDuniprot
Cdkuniprot
Cdkn1auniprot
Cdkn1buniprot
Cdk7uniprot
Ccnhuniprot
CyclinDuniprot
Cdkuniprot
Rb
E2funiprot
E2f1uniprot
E2f2uniprot
E2f3uniprot
Rbl1uniprot
Rb1uniprot
E2f4
E2f5uniprot
E2f6uniprot
Rb
E2funiprot
dp1uniprot
Tfdp1uniprot
Tfdp2uniprot
Cdk2uniprot
Ccne1uniprot
Ccne2uniprot
Pole2uniprot
Pole
Cdc25auniprot
Wee1uniprot
Pkmyt1uniprot
CyclinEchemical
Cdkuniprot
CyclinEchemical
Cdkuniprot
Cdc2auniprot
Cdk4uniprot
Cdk6uniprot
Cdk7uniprot
Cdc45luniprot
Rpa2uniprot
Rpa3uniprot
Rpa1uniprot
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm5uniprot
Mcm6uniprot
Mcm7uniprot
Orc1luniprot
Orc2luniprot
Orc3luniprot
Orc4luniprot
Orc5luniprot
Orc6luniprot
Prim1uniprot
Prim2uniprot
Pola2uniprot
Pcnauniprot
Trp53uniprot
Gadd45auniprot
Mdm2uniprot
Cdkn2cuniprot
Cdkn2buniprot
Cdkn2duniprot
Cdkn2auniprot
Cdc2auniprot
Ccna1uniprot
Ccnb1-rs1
Atmuniprot
p53uniprot
Cdkn1cuniprot
Ccng2uniprot
Mycuniprot
Creb1uniprot
Crebl1uniprot
Creb3l1
Creb3uniprot
Creb3l4
Creb3l3
Mnat1uniprot
G1 Cyclin
Cyclin Dschemical
p
p
p
p
E2funiprot
Rb
dp1uniprot
Dependent Kinases
TTTCC/GCGC
Cell cycle DNA replication genes
G1 Phase
G1/S transition Phase
Dependent Kinases
Cyclin Eschemical
G1/S transition Cyclin
p
inactive
phosphorylation of proteins
involved in G1/S transition
DNA polymerasesuniprot
DNA replication
origen recognition
complex
p
G1/S Cell Cycle
Checkpoint
G2 Phase-M phase
u
u
u
Degredation
p
e
cakuniprot
b
b
e

GPML Annotator: Mm_Cell_Cycle_KEGG.gpml

Hdac4chemical
Orc4luniprot
Mcm7uniprot
Mcm6uniprot
Mcm5uniprot
Mcm4uniprot
Mcm3uniprot
Bub1buniprot
Atmuniprot
Abl1uniprot
Bub1uniprot
Bub3uniprot
Wee1uniprot
Rb1uniprot
Rb1uniprot
Cdk2uniprot
Cdk4uniprot
Cdk6uniprot
Ccnhuniprot
Gsk3buniprot
Tgfb1uniprot
Orc2luniprot
Smad3uniprot
Smad4uniprot
Ccnd3uniprot
Ccnd2uniprot
Cdkn2auniprot
Cdkn1buniprot
Ccne1uniprot
Ccna1uniprot
Ccna2uniprot
Pcnauniprot
Ywhaguniprot
Gadd45auniprot
Cdc25auniprot
Hdac1-pschemical
Hdac2uniprot
Hdac5uniprot
Mcm2uniprot
Cdk2uniprot
Trp53uniprot
Prkdcuniprot
Chek1uniprot
Ccna2uniprot
Ccna1uniprot
Ccnb1uniprot
Ccnb2uniprot
Cdc2auniprot
Rb1uniprot
Tfdp1uniprot
Rbl1uniprot
Cdc45luniprot
Cdkn1auniprot
MEN
Mdm2uniprot
E2f1uniprot
E2f3uniprot
E2f5uniprot
Rbl1uniprot
E2f6uniprot
Cdc14A
Espl1uniprot
Smc1l2uniprot
Skp2uniprot
Skp2uniprot
Ep300
ARFuniprot
Chek2uniprot
Atruniprot
Cdk2uniprot
Cdc2auniprot
Ccnb3uniprot
Cdc6uniprot
Ccne2uniprot
AA545217
Tbc1d8uniprot
Cdc14B
Cdh1uniprot
Cdc20uniprot
Pttg1uniprot
Mpeg1chemical
Mad1l1uniprot
Mad2l1uniprot
Mad2l2uniprot
Cdc25buniprot
Cdc7uniprot
Orc5luniprot
Orc1luniprot
Orc3luniprot
Orc6luniprot
Hdac3uniprot
AL118125
Hdac6uniprot
Hdac7auniprot
E2f2uniprot
E2f4
14-3-3
Plk1uniprot
Cdc25cuniprot
Pkmyt1uniprot
MAPKenzymeuniprot
signaling
pathway
Growth Factor
Growth Factor
withdrawal
R-point
(Start)
+p
e
e
p16,15,18,19
p27,57
p21uniprot
Histone Deacetylasesuniprot
+u
+u
+u
+p
e
e
e
Apoptosis
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
HDAC
E2F
DNACHEBI:16991
SCFuniprot
ORC
+p
DNACHEBI:16991
DNA biosynthesis
S-phase proteins
+p
SCFuniprot
APC/C
-p
+p
+u
APC/C
+u
DNA damage checkpoint
Separin hmdbid:HMDB05005uniprot
Condensin
Transcription Factor E2F
Ubiquitinuniprot
mediated
proteolysischemical
ORC (Origin
Recognition Complex)
MCM (Mini-Chromosome
Maintenance) complex
G1
M
G2
S
Securinuniprot
MCMuniprot
+p
+p
-p

GPML Annotator: Mm_Cholesterol_Biosynthesis.gpml

Hmgcs1uniprot
Hmgcruniprot
Mvkuniprot
Pmvkuniprot
Mvduniprot
Sqleuniprot
Dhcr7uniprot
Idi1uniprot
Fdpsuniprot
Lssuniprot
Fdpsuniprot
Fdft1uniprot
Cyp51uniprot
Sc4moluniprot
Nsdhluniprot
Sc5duniprot
Fatty Acid Degradation
DiMethylally-PPchemical
Geranyl-PP hmdbid:HMDB01285
trans-trans-farnesyl-pp
Delta-Isopentenyl-5-PPchemical
Mevalonate-5-Pchemical
Mevalonate hmdbid:HMDB00227
HMG-CoA hmdbid:HMDB01375
Acetyl-CoA hmdbid:HMDB01206uniprot
Lathosterol hmdbid:HMDB01170
Lanosterol hmdbid:HMDB01251
Squalene-2,3-Epoxide hmdbid:HMDB01188
Squalene hmdbid:HMDB00256
Mevalonate-5-PPchemical
7-dehydro Cholesterol hmdbid:HMDB00032
Cholesterol hmdbid:HMDB00067

GPML Annotator: Mm_Circadian_Exercise.gpml

Myf6uniprot
Bteb1uniprot
Herpud1uniprot
Sf3a3uniprot
Cbx3uniprot
Oazinuniprot
Psma4uniprot
Zfr
Sumo1uniprot
Hist1h2bnuniprot
Purauniprot
Cry2uniprot
Per1uniprot
Per2uniprot
Cry1uniprot
Ppp1r3cchemical
Cebpbuniprot
Ppp2cbuniprot
Ncoa4
Etv6uniprot
D14Ertd171euniprot
Hspa8uniprot
Dnaja1uniprot
Ucp3uniprot
Gstm3uniprot
Ugp2uniprot
Cldn5uniprot
Pigfuniprot
Tubb4uniprot
Gfra1uniprot
Map3k7ip2uniprot
Sumo3uniprot
Gstp2uniprot
Nckap1uniprot
Vapauniprot
D5Ertd593euniprot
Dazap2uniprot
Idi1uniprot
Eif4g2uniprot
Tob1uniprot
Qk
Rbpmsuniprot
G0s2uniprot
Arntluniprot
Nr1d2uniprot
Clock
Btg1uniprot
H2-DMauniprot
Nr1d1uniprot
Per1uniprot
Per2uniprot
E-Box
E-Box
Cry1uniprot
Cry2uniprot
Per
Cry
Metabolism
Chaperone
Protein Modification
Transcription
Cell Cycle
DNA/RNA Binding
Other
Structural/Cytoskeleton
Signaling
mHrts
mHrts
mHrts
mSCNp
mLvrs,pchemical
mLvrp mSCNp
mHrts
mSCNp
mHrts
mLvrs
mHrts
mHrts
mHrts
mLvrs
mLvrs
mLvrp
mLvrp
mLvrp
mSCNp
mLvrs,pchemical
mLvrs,p SCNp
mHrts
mLvrs
mSCNp
mSCNp
mLvrs,pchemical
mLvrp mSCNp
mLvrs
mLvrs
mHrts
mLvrp
mSCNp
mHrts
mHrts
mLvrs,pchemical
mLvrp
mLvrp
mHrts Lvrsp
mHrts mLvrs
mLvrs,pchemical
mHrts mLvrs, mSCNp
NucleusCHEBI:33252
mHrts mLvrs,p mSCN
mHrts mLvrs,p
mHrts mLvrs
mHrts mLvrp
mHrts mLvrs,p mSCNp
E-Box
E-Box
Rev-erba
E-Box
e

GPML Annotator: Mm_Complement_Activation_Classical.gpml

C1qbuniprot
C1qauniprot
C1qguniprot
C1runiprot
C1suniprot
Daf2uniprot
Daf1uniprot
C2
C4
C3
Hc
C6
1700013L23Rik
C9
Masp1uniprot
C7
antigen/antibody
complex
C1 complex
aggregated IgG,
IgM-antigen complex,
polyanions, RNA, DNA
lipopolysacharides
Membrane
attack complex
IonsCHEBI:24870
H O
2
Cytoplasm
Plasma
Membrane
Prevents Complement Attack
Proteolytic Cleavage
Complex
Formation

GPML Annotator: Mm_Complement_and_Coagulation_Cascades_KEGG.gpml

C1qbuniprot
C1qauniprot
C1qguniprot
C1runiprot
C1suniprot
Daf2uniprot
Daf1uniprot
C2
C4
C3
Hc
C6
1700013L23Rik
C9
Masp1uniprot
Cd59auniprot
Mcpuniprot
Crryuniprot
Cfiuniprot
Masp2uniprot
Mbl1uniprot
Serping1uniprot
C4bpuniprot
C3ar1uniprot
C5r1uniprot
Cr2uniprot
Cr1uniprot
H2-Bfuniprot
Adnuniprot
Cfhuniprot
F3
F7
F9
F8
F11uniprot
Vwfuniprot
F10uniprot
F5
F2
Fgbuniprot
Serpind1uniprot
Cpb2uniprot
Tfpiuniprot
F13buniprot
F2runiprot
Serpinc1uniprot
Serpina5uniprot
Serpina1uniprot
Procuniprot
Pros1uniprot
Platuniprot
Plauuniprot
Thbduniprot
Serpine1uniprot
Plauruniprot
Plguniprot
F12uniprot
Klkb1uniprot
Kng1uniprot
Serpinf2uniprot
Bdkrb1uniprot
C7
A2muniprot
membrane attack complex
Cell lysis
C3
Convertase
C3b
Antibody/antigen
complex
C4b/2a
Muscle contraction,
Chemotaxis,
Phagocyte recruitment
Inflammation, etc.
C5a
C3a
C4auniprot
C3b/4b, C3b, C3d
Mediators
Classical Pathway
C3b/Bb
insulin, etc.
Zymosan
Alternative Pathway
Complement Cascade
Lectin Pathway
Thrombinenzymeuniprot
Clot
fibrin degredation
Vascular injury
products
Fibrin
monomer
Cross-linked
fibrin polymer
Platelet, monocyte,
lymphocyte,
endothelial cells,
smooth muscle cells
activation, etc.
Coagulation Cascade
Extrinsic pathway
Degredation
Cell adhesion,
migration,
proliferation, etc.
Cell adhesion,
migration,
proliferation, etc.
Bradykininuniprot
Collagen,
basement membrane,
activated platelets, etc.
Fibrinolytic system
Kinin kallikrein system

GPML Annotator: Mm_Cytokines_and_Inflammatory_Response_Biocarta.gpml

Tnfuniprot
Il1buniprot
Il1auniprot
Il6uniprot
Tnfuniprot
Il1buniprot
Il1auniprot
Tnfuniprot
Tgfb1uniprot
Pdgfauniprot
Tnfuniprot
Il1auniprot
Il1buniprot
Tnfuniprot
Il1auniprot
Il1buniprot
Il6uniprot
Csf1uniprot
Csf2uniprot
Csf3uniprot
Cd4uniprot
Il1auniprot
Il1buniprot
Il6uniprot
Il10uniprot
Ifnb1uniprot
Tnfuniprot
Il3uniprot
Il6uniprot
Csf2uniprot
Il3uniprot
Il4uniprot
Il10uniprot
Il13uniprot
Ifnguniprot
Tnfuniprot
Il2uniprot
Il15uniprot
Il2uniprot
Ifnguniprot
Il15uniprot
Il3uniprot
Il4uniprot
Il10uniprot
Il4uniprot
Il10uniprot
Il4uniprot
Il6uniprot
Tgfb1uniprot
Il2uniprot
Il4uniprot
Il5uniprot
Il13uniprot
Ifnguniprot
Il3uniprot
Il5uniprot
Tgfb1uniprot
Il2uniprot
Il2uniprot
Il2uniprot
Il11uniprot
Cxcl1uniprot
Cxcl1uniprot
Il12buniprot
Il12buniprot
Il12buniprot
Il15uniprot
Il7uniprot
Ifna
Ifna
Macrophage
Neutrophil
T-helper
Hypothalamus
Fibroblasts
Endothelial Cells
Inflammatory Response
Hematopoietic Stem Cell
Hematopoiesis
TCR
T-helper
NK cell
Lymphocyte Activated
Mast Cell
B Cell
B Cell
B Cell
B Cell
Plasma Cell
Antibodies
Killer Cells (LAK)
Eos
Eos
Eos
Th
Th
Th
Tc
Tc
Tc
clonal expansion of T cells
(fever)
MHC II

GPML Annotator: Mm_Delta-Notch_NetPath_3.gpml

Notch1uniprot
Notch2uniprot
Notch3uniprot
Notch4uniprot
Dll1uniprot
Dll4uniprot
Jag1uniprot
Jag2uniprot
Psen1uniprot
Psen2uniprot
Aph1auniprot
Aph1buniprot
Psenenuniprot
Ncstnuniprot
Adam10uniprot
Dll1uniprot
Dll1uniprot
Adam17uniprot
Notch1uniprot
Notch1uniprot
Notch2uniprot
Notch4uniprot
Gsk3buniprot
Notch2uniprot
Gsk3buniprot
Numb
Itchuniprot
App
Numbluniprot
PIK3R1uniprot
Pik3r2uniprot
Akt1uniprot
Furinenzymeuniprot
Cntn1uniprot
Nov
Dtx1uniprot
Ascl1uniprot
Ep300
Trp53uniprot
Lfnguniprot
Mfnguniprot
Pofut1uniprot
Skp1auniprot
Fbxw7uniprot
Hey1uniprot
Maml2
MAML3uniprot
Maml1uniprot
SNW1uniprot
Ncor2uniprot
Ncor1uniprot
Hdac1uniprot
1700023B02Rik
Sap30uniprot
Hdac2uniprot
Sin3auniprot
Hes1uniprot
Stat3uniprot
Jak2uniprot
Ncor1uniprot
Ncor2uniprot
Relauniprot
Nfkbiauniprot
Hey2uniprot
Tle1uniprot
Relauniprot
Smad3uniprot
Smad4uniprot
Yy1uniprot
CDK2uniprot
Lef1uniprot
Mef2cuniprot
Skp1auniprot
Cul1uniprot
Skp2uniprot
Rbx1uniprot
Tcfe2auniprot
Mapk3uniprot
Mapk1uniprot
Wdr12uniprot
Pcafchemical
Fhl1uniprot
Ring1uniprot
Hivep3
SPENuniprot
Ep300
Smad1uniprot
Hes6uniprot
Zfpm1uniprot
MAGEA1uniprot
Cntfruniprot
Cntfuniprot
Hes5uniprot
Lckuniprot
Stat3uniprot
Jununiprot
Rbpsuhuniprot
Notch3uniprot
Dtx1uniprot
Skp2uniprot
Egfuniprot
Egfruniprot
Jag1uniprot
Jag1uniprot
Jag2uniprot
Notch1uniprot
Dll4uniprot
Jag2uniprot
Notch3uniprot
Notch1uniprot
Notch1uniprot
Notch2uniprot
Molecular association
Phosphorylationchemical
Proteolytic Cleavage
Ubiquitination
Translocation
Gamma secretase complex
Intracellular Domain
-- ICD
ICD
ICD
ICD
ICD
ICD
Glycosylation
PM
GO->PM
CY->NU
NU->CY
PM->NU
PM->NU
PM->NU
NU->CY
NU->CY
D
D
D
GO->PM
PM->CY
PM->NU
ICD
(Protein-protein interaction)
Activationchemical
Inhibitionchemical
D
Reactioin through unknown mechanisms/molecules
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
CY
Plasma membrane
Cytoplasm
GO
Golgi apparatus
NucleusCHEBI:33252
NU
CY->NU
CY->NU
CY->NU
Accession Number: NetPath_3; cellmap:3
Enzyme complex
D
D
CY->NU
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
MT
Mitochondrion

GPML Annotator: Mm_DNA_replication_Reactome.gpml

Mcm10uniprot
Ubbuniprot
Orc2luniprot
Orc1luniprot
Orc6luniprot
Cdc6uniprot
Gmnnuniprot
Ris2uniprot
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm5uniprot
Mcm6uniprot
Cdk2uniprot
AA545217
Cdc7uniprot
Rpa2uniprot
Rpa1uniprot
Rpa3uniprot
Prim1uniprot
Prim2uniprot
Pole2uniprot
Pole
Pola2uniprot
Pola1uniprot
Pcnauniprot
Rfc5uniprot
Rfc4uniprot
Rfc3uniprot
Rfc2uniprot
Recc1uniprot
Pold2uniprot
Pold3uniprot
Pold4uniprot
Pold1uniprot
Orc3luniprot
Orc5luniprot
Orc4luniprot
Mcm7uniprot
Cdc45luniprot
Wbscr5uniprot
Origin
Orc3uniprot
Orc2uniprot
Orc5uniprot
Orc2uniprot
Orc3uniprot
Orc5uniprot
Orc4uniprot
Orc1uniprot
Orc3uniprot
Orc5uniprot
Orc4uniprot
Orc2uniprot
Orc Complex
Phosphorylation of Mcm 2-7 complex
primase
DNA polymerase alpha: primase: origin complex
DNA polymerase alpha: primase: origin complex
CTP hmdbid:HMDB00082uniprot
GTP hmdbid:HMDB01273
UTP hmdbid:HMDB00285
ATP hmdbid:HMDB00538
RNA Primer
dCTP hmdbid:HMDB00998
dGTP hmdbid:HMDB01440
dUTP hmdbid:HMDB01191
dATP hmdbid:HMDB01532
Prereplicative complex
Phosphorylated Orc1
Ubiquitinuniprot
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
Phosphorylated Cdc6
Ubiquitinated Orc1
Ubiquitinated Cdc6
Degraded by proteasome in cytosol
Degraded by proteasome in cytosol
RNA primer-DNA primer
RNA primer-DNA primer
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
p49uniprot
p58uniprot
p70uniprot
p180uniprot
RFC36uniprot
RFC37uniprot
RFC38uniprot
RFC40uniprot
RFC140uniprot
Mcm 4,6,7 trimer forms and associates
Ubiquitinuniprot
with the replication fork
Orc2uniprot
Orc3uniprot
a
RFC Heteropentamer:RNA primer-DNA primer
ATP hmdbid:HMDB00538
PCNA homotrimer
RFC Heteropentamer:RNA primer-DNA primer:
RNA primer-DNA primer:origin duplex:PCNA
2. Activation of the pre-replicative complex
3. DNA replication initiation
4. Switching of origins to post-replicative state
1. Assembly of the pre-replicative complex
5. Leading/lagging strand synthesis
Orc complex
Orc complex
Orc complex
Orc complex
Pre-replicative complex
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm5uniprot
Mcm6uniprot
Mcm7uniprot
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm5uniprot
Mcm6uniprot
Mcm7uniprot
Mcm10uniprot
Cdc6uniprot
Cdc6uniprot
Cdt1uniprot
Cdt1uniprot
Gemininuniprot
DNA polymeraseuniprot
Processive complex

GPML Annotator: Mm_EGFR1_NetPath_4.gpml

Egfuniprot
Raf1uniprot
Hras1uniprot
Nrasuniprot
Krasuniprot
Shoc2uniprot
PIK3R1uniprot
Map3k2uniprot
Grb14uniprot
Grb2uniprot
Grb10uniprot
Map3k3uniprot
Sos1uniprot
Grb7uniprot
Pik3r2uniprot
Shc1uniprot
Pik3r3uniprot
Pik3cauniprot
Pik3cbuniprot
Pik3cduniprot
Pik3cguniprot
Gab1uniprot
Gab2uniprot
Jak1uniprot
Stat1uniprot
Jak2uniprot
Stat3uniprot
Stat5auniprot
Stat2uniprot
Stat5buniprot
Map2k1uniprot
Prkcauniprot
MAP3K1uniprot
Prkczuniprot
Prkcmuniprot
Prkciuniprot
Prkcb1uniprot
PRKCGuniprot
Map2k2uniprot
Map2k3uniprot
Map2k5uniprot
Map3k4uniprot
Vav1uniprot
Vav3uniprot
Vav2uniprot
Mapk7uniprot
Mapk1uniprot
Mapk3uniprot
Elk4uniprot
Elk1uniprot
Mapk8uniprot
Map2k7
Ptprruniprot
Gja1uniprot
Ywhabuniprot
Wnk1uniprot
Egfruniprot
Krt2-7
Krt2-8uniprot
Krt1-17uniprot
Krt1-18uniprot
LOC382523
Snrpd2uniprot
EPPK1uniprot
Plec1uniprot
Ptpn12uniprot
Stat3uniprot
Stat1uniprot
Srcuniprot
Cbluniprot
Crkuniprot
Crkluniprot
Ndufa13uniprot
Rac1uniprot
Ptk2buniprot
Cav1uniprot
Cav2uniprot
Nck1
Nck2uniprot
Plcg1uniprot
Git1uniprot
Rgs16uniprot
Socs1uniprot
Socs3uniprot
Inppl1
Rab5auniprot
Usp6nluniprot
Arf4uniprot
Zfp259uniprot
Ripk1uniprot
Map3k14uniprot
Ralgdsuniprot
Rasa1uniprot
Ptk6uniprot
Prkar1auniprot
Ptpn6uniprot
Ptpn11uniprot
Plscr1uniprot
Errfi1uniprot
Dok2uniprot
Pitpnauniprot
Cblcuniprot
Cblbuniprot
Pld2uniprot
Pld1uniprot
Prkcauniprot
Eps15uniprot
Eps8uniprot
Hdhuniprot
Pik3c2b
Sh3bgrluniprot
Cskuniprot
Reps2uniprot
Ralbp1uniprot
Ralbuniprot
Reps1uniprot
Tnk2uniprot
ABI1uniprot
Sos2uniprot
Dnm1uniprot
Sh3gl3uniprot
Cdc42uniprot
Spry2uniprot
Jund1uniprot
Fosuniprot
Cebpauniprot
Mycuniprot
Cebpbuniprot
Pebp1uniprot
Tieg3uniprot
Sin3auniprot
Tgifuniprot
Hdac1uniprot
Sh3kbp1uniprot
Sh3gl2uniprot
Jununiprot
Sp1uniprot
Akt1uniprot
Ptpn5uniprot
Sncauniprot
Rps6ka1uniprot
Rps6ka3uniprot
Rps6ka2uniprot
Ap2a1uniprot
Wasluniprot
Ceacam1uniprot
Eef1a1uniprot
2900057D21Rik
Dip3buniprot
Mta2uniprot
Eps15l1uniprot
Epn1uniprot
Hip1uniprot
Rfxankuniprot
Mapk14uniprot
Tnip1uniprot
Egfruniprot
Egfruniprot
Rbbp7uniprot
Ddef1uniprot
Stxbp1uniprot
Ctnnd1uniprot
Pkn2uniprot
Pak1uniprot
Sh2d3cuniprot
Bcar1uniprot
Casp9
Rps6ka5uniprot
Smad2uniprot
Smad3uniprot
Smad2uniprot
Smad3uniprot
ATF1uniprot
Creb1uniprot
Foxo1uniprot
Pxnuniprot
Elf3
Hat1uniprot
Camk2auniprot
Itchuniprot
Arafuniprot
Mcf2chemical
Elf3
Rps6ka3uniprot
Map3k2uniprot
Foxo1uniprot
Eps15uniprot
Eef1a1uniprot
Stat1uniprot
Stat3uniprot
Stat2uniprot
Stat5auniprot
Zfp259uniprot
Plcg1uniprot
Spry2uniprot
Plcg2uniprot
Plcg2uniprot
Ptpn6uniprot
Raf1uniprot
Gab1uniprot
Shc1uniprot
Pld1uniprot
Bcar1uniprot
Sh2d3cuniprot
Stxbp1uniprot
2900057D21Rik
2900057D21Rik
Dip3buniprot
Mapk1uniprot
Map2k1uniprot
Dusp1uniprot
Dusp1uniprot
Arf4uniprot
Arf4uniprot
Egfuniprot
Egfuniprot
Sh3gl2uniprot
Egfruniprot
Molecular association
Translocation
Cytoplasm
NucleusCHEBI:33252
Autophosphorylationchemical
Phosphorylationchemical
Receptor
Ligand
Molecule in the pathway
Enzyme complex
Plasma membrane
Extracellular
Gene Symbol
PM
CY
PM
NU
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
CY
NU
NU
CY
MA
MA
MA
MA
CY
NU
NU
CY
CY
NU
NU
CY
CY
PM
NU
CY
MA
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
PM
CY
PM
CY
PM
CY
NU
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
CY
NU
PM
CY
PM
CY
NU
CY
NU
CY
NU
CY
PM
CY
PM
NU
PM
CY
PM
EN
PM
EN
PM
CY
NU
EC
Proteins in a complex interaction
(Protein-protein interaction)
Autodephosphorylationchemical
Acetylationchemical
Accession Number : NetPath_4; cellmap:4
MA
MA
D
D
D
Reaction through unknown mechanisms/molecules
MA
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT

GPML Annotator: Mm_Eicosanoid_Synthesis.gpml

Pla2g6uniprot
Alox5apuniprot
Alox5uniprot
Tbxas1uniprot
Ptgs1uniprot
Ptgs2uniprot
Ptgisuniprot
Ptgdsuniprot
Ptgesuniprot
PGD2 11-ketoreduc
Lta4huniprot
Alox5apuniprot
Alox5uniprot
Peroxidase?
Peroxidase?
Ltc4suniprot
Dpep1uniprot
Alox15uniprot
Alox12euniprot
Alox12uniprot
Alox15buniprot
Pla2g5uniprot
Pla2g2cuniprot
Pla2g2auniprot
Pla2g12auniprot
Ggt1uniprot
Ptges2uniprot
Peroxidase?
PGE2 9-ketoreduc
Cell Membrane
Arachadonic Acidchemical
PGH2 hmdbid:HMDB01381
5-HPETE
12-HPETE
15-HPETE
15-HETE
12-HETECHEBI:19138
LTC4 hmdbid:HMDB01198
LTD4CHEBI:28666
LTE4 hmdbid:HMDB02200
PGI2 hmdbid:HMDB01335uniprot
PGF2-alphachemical
PGE2 hmdbid:HMDB01220
PGD2 hmdbid:HMDB01403
TXA2 hmdbid:HMDB01452
Lipox = Lipoxygenase
ETE = Eicosatetraenoic Acid
HP = Hydroperoxy
H = Hydroxy
diH = Dihydroxy
PG = Prostaglandin
LT = Leukotriene
TX = Thromboxane
6-KetoPGF2-alphachemical
5-HETECHEBI:28209
LTA4 hmdbid:HMDB01337uniprot
LTB4uniprot
TXA3
TXB2CHEBI:28728

GPML Annotator: Mm_Electron_Transport_Chain.gpml

Atpif1uniprot
Cox6cuniprot
Cox17uniprot
Surf1uniprot
Ucp1uniprot
Ucp2uniprot
Ucp3uniprot
Cycsuniprot
Cyctuniprot
COX1uniprot
COX2uniprot
COX3uniprot
Cox4i1uniprot
Cox5auniprot
Cox5buniprot
Cox6a2uniprot
Cox6a1uniprot
Cox6b1uniprot
Cox7a1uniprot
Cox7a2uniprot
Cox7buniprot
Cox7cuniprot
Cox8buniprot
Cox8auniprot
ATP8uniprot
Slc25a4uniprot
Slc25a5uniprot
Atp5a1uniprot
Atp5buniprot
Atp5c1uniprot
Atp5duniprot
Atp5euniprot
Atp5juniprot
Atp5ouniprot
ATP6uniprot
Atp5f1uniprot
Atp5g1uniprot
Atp5g2uniprot
Atp5g3uniprot
Atp5huniprot
Atp5kuniprot
Atp5j2uniprot
Atp5luniprot
Slc25a14uniprot
Cox7a2luniprot
ND2uniprot
ND3uniprot
ND4uniprot
ND5uniprot
ND6uniprot
ND4Luniprot
Ndufa1uniprot
Ndufa4uniprot
Ndufs6uniprot
Ndufa3uniprot
Sdhauniprot
Sdhbuniprot
Sdhcuniprot
Sdhduniprot
Uqcrc1uniprot
Uqcrc2uniprot
Uqcrhuniprot
CYTBuniprot
1500040F11Rik
ND1uniprot
Ndufa2uniprot
Ndufa6uniprot
Ndufb4uniprot
Ndufb9uniprot
Ndufb2uniprot
Ndufb10uniprot
AI256775
Atp5suniprot
Slc25a27
Ndufa7uniprot
Ndufab1uniprot
Ndufa5uniprot
Ndufa8uniprot
Ndufv2uniprot
Ndufs3uniprot
Ndufa9uniprot
Ndufa10uniprot
Uqcrbuniprot
C subunit
F1 Complex
Stalk
F0 Complex
binds ATP Synthase beta
Uncoupling Protein
Complex Iuniprot
Complex IV
Complex III
Complex II
Oxidoreductaseenzyme
NADH-Ubiquinonechemical
Succinate-Ubiquinonechemical
Oxidoreductaseenzyme
Ubiquinol-Cytochrome Cchemical
Reductaseenzyme
Cytochrome C
Oxidase
ATP Synthase (Complex V)
Adenine Nucleotidechemical
Translocator
Ubiquinone hmdbid:HMDB02012
Assembly

GPML Annotator: Mm_ESC_Pluripotency_Pathways.gpml

Lifruniprot
Il6stuniprot
Jak1uniprot
Jak1uniprot
Stat3uniprot
Ptpn11uniprot
Stat3uniprot
Lrp5uniprot
Dvl1uniprot
Dvl2uniprot
Dvl3uniprot
Axin1uniprot
Gsk3buniprot
Apcuniprot
Ctnnb1uniprot
Ctnnb1uniprot
Tcf1uniprot
Ctnnb1uniprot
Bmp4uniprot
Lifuniprot
Wnt2uniprot
Wnt1uniprot
Wnt2buniprot
Wnt3uniprot
Wnt3auniprot
Wnt4uniprot
Wnt5auniprot
Wnt5buniprot
Wnt6uniprot
Wnt7auniprot
Wnt7buniprot
Wnt10auniprot
Wnt10buniprot
Wnt11uniprot
Wnt9buniprot
Wnt16uniprot
Grb2uniprot
Sos1uniprot
Gab1uniprot
Erasuniprot
Raf1uniprot
Brafuniprot
Arafuniprot
Map2k1uniprot
Map2k2uniprot
Map2k3uniprot
Map2k5uniprot
Map2k6uniprot
Sepp1uniprot
Mapk1uniprot
Mapk4uniprot
Mapk6uniprot
Mapk7uniprot
Mapk12uniprot
Pik3r2uniprot
Pik3cduniprot
Akt1uniprot
Akt2uniprot
Akt3uniprot
Ptenuniprot
Egfuniprot
Pdgfrbuniprot
Pdgfrauniprot
Fgfr1uniprot
Fgf14uniprot
Fgf1uniprot
Fgf2uniprot
Fgfr4uniprot
Fgf10uniprot
Fgf3uniprot
Fgf5uniprot
Fgf6uniprot
Fgf7uniprot
Fgf8uniprot
Fgf9uniprot
Fgfr3uniprot
Fgfr2uniprot
Fgf18uniprot
Fgf12uniprot
Fgf15uniprot
Fgf13uniprot
Fgf17uniprot
Fgf23uniprot
Fgf20uniprot
Fgf22uniprot
Fgf16uniprot
Fgf21uniprot
Fgf4uniprot
Fgf11uniprot
Egfruniprot
Pdgfbuniprot
Pdgfauniprot
Lrp6uniprot
Fzd1uniprot
Fzd2uniprot
Fzd3uniprot
Fzd4uniprot
Fzd5uniprot
Fzd6uniprot
Fzd7uniprot
Fzd8uniprot
Fzd9uniprot
Stat3uniprot
Stat3uniprot
Acvr1uniprot
Bmpr1auniprot
Bmpr1buniprot
Bmpr2uniprot
actr2uniprot
Smad1uniprot
Smad5uniprot
Smad4uniprot
Smad6uniprot
Smad7uniprot
Smad9uniprot
Smad1uniprot
Smad5uniprot
Smad9uniprot
Smad1uniprot
Smad5uniprot
Smad9uniprot
Smad4uniprot
actr2b
Mycuniprot
+p
+p
+p
Degradation of beta-catenin
NucleusCHEBI:33252
+p
R-Smad / Co-Smad
RAF
MEK hmdbid:HMDB00474
ERKenzymeuniprot
Ras-GTPchemical
Ras-GDPchemical
Elkuniprot
c-Fos
c-Jun
PIP3uniprot
+p
PI3 kinaseenzymeuniprot
mdm2uniprot
mTORuniprot
IKKenzyme
Ca++
PKCenzymeuniprot
JNKenzymeuniprot
PDE
non-canonical pathway
Ras/ERK pathway
LIF Signaling
PI3 Kinase / Akt signaling
Self-renewal
Self-renewal
Self-renewal
Wnt signaling
BMP signaling
Frizzled ligands
+p
+p
+p
Inhibits self-renewal (promotes differentiation)
NucleusCHEBI:33252
Self-renewal
-p
-p Dephosphorylation
b
b
Gi Signaling
R-Smad / Co-Smad complex
b
PIP2uniprot
PIP2uniprot
GPCR-Arrestin Signals
G12 Signaling
Promotes self-renewal (inhibits differentiation)
+p Pshophorylation
b Binding

GPML Annotator: Mm_Fas_Pathway_and_Stress_Induction_of_HSP_Regulation_Biocarta.gpml

Daxxuniprot
Daxxuniprot
Fasluniprot
Fasuniprot
Hspb1uniprot
Tnfuniprot
Il1auniprot
Mapkapk2uniprot
Mapkapk3uniprot
Cycsuniprot
Bcl2uniprot
Casp9
Apaf1uniprot
Apaf1uniprot
Casp3uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
actinuniprot
Fadduniprot
Faf1uniprot
Faf1uniprot
Ptpn13uniprot
Casp8uniprot
Casp8uniprot
Cflaruniprot
Ripk2uniprot
casp10
Casp7uniprot
Casp3uniprot
Parp1uniprot
Pak1uniprot
Pak2uniprot
Arhgdibuniprot
Spna1uniprot
Dffauniprot
Dffbuniprot
Dffbuniprot
Prkdcuniprot
Casp6uniprot
Lmnauniprot
Lmnb1uniprot
Lmnb2uniprot
Rb1uniprot
Map3k1uniprot
Map2k4uniprot
Mapk8uniprot
Map3k7uniprot
Jununiprot
Stress
Mitochondria Pathway
Apoptosome
Proteasomeenzyme
NFK-B
Pathway
ROSCHEBI:26523
Cell Survival
Necrosis
P
Apoptosis
FAS Pathway
P
P
3x-P
3x-P
3x-P
DNA presentation
P
P
P
P
P
P
P
P
P
Ceramide hmdbid:HMDB04957
Extracellular
Cytoplasm
NucleusCHEBI:33252
Stress Induction of HSP regulation
Cut
Inhibitionchemical
Activate
Self-activation
Glutathione hmdbid:HMDB00125

GPML Annotator: Mm_Fatty_Acid_Beta_Oxidation_1_BiGCaT.gpml

Lpluniprot
Tpi1uniprot
Gykuniprot
Gk2
Gpd2uniprot
Cpt2uniprot
Cpt1auniprot
Chkbuniprot
Slc25a20uniprot
Cratuniprot
Acsl1uniprot
Acas2uniprot
Acsl3uniprot
Acsl4uniprot
Acsl5uniprot
Acsl6uniprot
Cpt1buniprot
Acadvluniprot
Hadhauniprot
Hadhbuniprot
Hadhauniprot
Hadhbuniprot
Hadhbuniprot
Hadhauniprot
Acadluniprot
Hadhbuniprot
Hadhauniprot
Hadhauniprot
Hadhbuniprot
Hadhauniprot
Hadhbuniprot
Acadluniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Lipeuniprot
Lipcuniprot
Pnpla2chemical
Lipfuniprot
Triacylglycerolchemical
Glycerol hmdbid:HMDB00131
Dihydroxyacetone Phosphate hmdbid:HMDB01473
Fatty AcidCHEBI:35366
Acyl-CoACHEBI:17984
Palmitoyl-CoA hmdbid:HMDB01338
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
L-Glycerol-3-Phosphatechemical
See Glycolysis MAPP
Trans-Hexadecanoyl-CoAchemical
(S)-3-Hydroxyhexadecanoyl-CoAchemical
3-Oxopalmitoyl-CoA hmdbid:HMDB06402
Myristoyl-CoACHEBI:15532
Acetyl-CoA hmdbid:HMDB01206uniprot
Trans-Tetradex-2-enoyl-CoAchemical
(S)-3-Hydroxytetradecanoyl-CoAchemical
Dxotetradecanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Lauroyl-CoA hmdbid:HMDB03571
2-trans-dodecenoyl-CoACHEBI:15471
(S)-3-Hydroxydodexanonyl-CoAchemical
3-Oxododexanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Decanoyl-CoACHEBI:28493
See Beta Oxidation 2 MAPP
Lipasesenzymeuniprot
See TCA Cycle MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP

GPML Annotator: Mm_Fatty_Acid_Beta_Oxidation_2_BiGCaT.gpml

Acadmuniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Acadmuniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Acadsuniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Decanoyl-CoACHEBI:28493
See Beta Oxidation 1 MAPP
Trans-Dec-2-enoyl-CoACHEBI:10723
(S)-3-Hydroxydecanoyl-CoAchemical
3-Oxocanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Octaoyl-CoAchemical
Trans-Oct-2-enoyl-CoACHEBI:27537
(S)-3-Hydroxyoctanoyl-CoAchemical
3-Oxo-octanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Hexanoyl-CoA hmdbid:HMDB02845
See Beta Oxidation Unsaturated MAPP
Trans-Hex-2-enoyl-CoACHEBI:28706
(S)-Hydrocyhexanoylchemical
3-Oxohexanoyl-CoACHEBI:27648
Acetyl-CoA hmdbid:HMDB01206uniprot
Butanoyl-CoA hmdbid:HMDB01088
See Beta Oxidation 3 MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP

GPML Annotator: Mm_Fatty_Acid_Beta_Oxidation_3_BiGCaT.gpml

Acadsuniprot
Echs1uniprot
Hadhscuniprot
Gcdhuniprot
Dlduniprot
Acat1uniprot
Hadhauniprot
Hadhbuniprot
Butanoyl-CoA hmdbid:HMDB01088
See Beta Oxidation 2
Cronoyl-CoAchemical
(S)-3-Hydroxybutanoyl-CoA hmdbid:HMDB01166
Acetoacetyl-CoA hmdbid:HMDB01484
Glutaryl-CoA hmdbid:HMDB01339
Glutarate hmdbid:HMDB00661
Acetyl-CoA hmdbid:HMDB01206uniprot
See TCA Cycle

GPML Annotator: Mm_Fatty_Acid_Beta_Oxidation_Meta_BiGCaT.gpml

Lpluniprot
Gykuniprot
Gk2
Gpd2uniprot
Tpi1uniprot
Acsl1uniprot
Acsl3uniprot
Acsl4uniprot
Acsl5uniprot
Acsl6uniprot
Cratuniprot
Cpt1auniprot
Chkbuniprot
Cpt2uniprot
Slc25a20uniprot
Cpt1buniprot
Acadvluniprot
Hadhauniprot
Hadhbuniprot
Acadluniprot
Echs1uniprot
Hadhscuniprot
Acadmuniprot
Echs1uniprot
Hadhauniprot
Hadhscuniprot
Hadhbuniprot
Acadsuniprot
Echs1uniprot
Acadsuniprot
Hadhscuniprot
Acat1uniprot
Hadhauniprot
Hadhbuniprot
Dlduniprot
Gcdhuniprot
Lipcuniprot
Lipeuniprot
Lipfuniprot
Pnpla2chemical
Acas2uniprot
Beta Oxidation 1 MAPP
Beta Oxidation 2 MAPP
Beta Oxidation 3 MAPP
This MAPP is only present for statistical purpose,
to help evaluate all beta-oxidation MAPPS at once.
Omit the 3 individual sub-mapps from statistical
evaluation to prevent redundancy.

GPML Annotator: Mm_Fatty_Acid_Omega_Oxidation_BiGCaT.gpml

Cyp1a1uniprot
Cyp1a2uniprot
CYP3A4uniprot
CYP4A11uniprot
CYP2A6uniprot
CYP2D6uniprot
Cyp2e1uniprot
ADH1Auniprot
ADH1Buniprot
ADH1Cuniprot
Adh4uniprot
ADH6uniprot
Adh7uniprot
Aldh1a1uniprot
Aldh2uniprot
CH3-(CH2)10-COO-
HO-CH-(CH2)10-COO-
HOC-(CH2)10-COO-
-OOC-(CH2)10-COO-
Beta Oxidation

GPML Annotator: Mm_Fatty_Acid_Synthesis_BiGCaT.gpml

Pcxuniprot
Aclyuniprot
Fasnuniprot
Fasnuniprot
Acacbchemical
ACACAuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Acaa2uniprot
Hadhscuniprot
Ech1uniprot
Pecruniprot
Scd1uniprot
Acsl1uniprot
Acsl3uniprot
Acsl4uniprot
Acas2uniprot
Acsl5uniprot
Acsl6uniprot
Echs1uniprot
Echdc2
Echdc1
Echdc3
Nrbf1uniprot
Decr1uniprot
Oxaloacetate hmdbid:HMDB00223
Pyruvate hmdbid:HMDB00243
TCA Cycle
Mitochondrion
Cytosol
Citrate hmdbid:HMDB00094
Acetyl-CoA hmdbid:HMDB01206uniprot
Acetyl-ACPchemical
Acetyl-synthase
Malonyl-CoA hmdbid:HMDB01175
Malonyl-ACPchemical
Acetoacetyl-ACPchemical
beta-hydroxybutyrylchemical
Crotonoyl-ACPchemical
Butyryl-ACPchemical
less than 6 iterations
Palmitoyl-ACPchemical
6 iterations
Palmitate hmdbid:HMDB00220
3-ketoacyl-CoAchemical
3-L-Hydroxyacyl-CoAchemical
trans-delta2-enoyl-CoAchemical
Acyl-CoA (n+2)
Long-Chain fatty acid
Fatty acyl CoA
See Triacylglyceride Synthesis MAPP

GPML Annotator: Mm_Focal_adhesion_KEGG.gpml

Thbs4uniprot
Tncuniprot
Tnruniprot
Vtnuniprot
Vwfuniprot
Lamc1uniprot
Lamc3uniprot
Tnnuniprot
Col5a3
Tnxb
Col4a6
Egfuniprot
Figfuniprot
Hgfuniprot
Igf1uniprot
Pdgfauniprot
Pdgfbuniprot
Pgfuniprot
Pelouniprot
Itga2uniprot
Itga3uniprot
Itga4uniprot
Itga5uniprot
Itga6uniprot
Itga7uniprot
Itga8
Itga9
Itga10
Itga11uniprot
Itga2buniprot
Itgaeuniprot
Itgaduniprot
Itgaluniprot
Itgamuniprot
Itgavuniprot
Itgaxuniprot
Itgb1uniprot
Itgb2uniprot
Itgb3uniprot
Itgb4uniprot
Itgb5uniprot
Itgb6uniprot
Itgb7uniprot
Itgb8
Rap1auniprot
Rap1buniprot
Dock1uniprot
Shc1uniprot
Shc3uniprot
Sos1uniprot
Zyxuniprot
Cavuniprot
Cav3uniprot
Fynuniprot
Grb2uniprot
Vaspuniprot
Srcuniprot
Ilkuniprot
Cav2uniprot
Actn1uniprot
Vcluniprot
Chad
Col11a1uniprot
Col11a2uniprot
Col2a1uniprot
Col3a1uniprot
Col4a1uniprot
Col4a2uniprot
Col4a4
Col5a1uniprot
Col5a2
Col6a2uniprot
Col1a1uniprot
Col1a2uniprot
Compuniprot
Fn1uniprot
Ibspuniprot
Lama2uniprot
Lama3uniprot
Lama4uniprot
Lama5uniprot
Lamb1-1uniprot
Lamb2uniprot
Lamc2uniprot
Relnuniprot
Spp1uniprot
Thbs1uniprot
Thbs2uniprot
Thbs3uniprot
Lamb3uniprot
Lama1uniprot
Blkuniprot
Egfruniprot
Erbb2uniprot
Fgruniprot
Flt1uniprot
Hckuniprot
Igf1runiprot
Kdruniprot
Met
Pdgfrauniprot
Pdgfrbuniprot
Ptk6uniprot
Srmsuniprot
Txkuniprot
Tesk2uniprot
Styk1uniprot
Tnk2uniprot
Tnk1uniprot
Arafuniprot
Brafuniprot
Ha-Rasuniprot
Raf1uniprot
Mapk4uniprot
Sepp1uniprot
Map2k5uniprot
Map2k6uniprot
Mapk12uniprot
Mapk1uniprot
Mapk6uniprot
Map2k2uniprot
Map2k3uniprot
Map2k1uniprot
Ptk2uniprot
Arhgap5uniprot
Rhobuniprot
Farp2uniprot
Flnauniprot
Tln1uniprot
Pxnuniprot
Capn1uniprot
Rhoauniprot
Pdpk1uniprot
Parvbuniprot
Akt1uniprot
Akt2uniprot
Akt3uniprot
Rock1uniprot
Rock2uniprot
Pip5k1cuniprot
Ppp1r12auniprot
Myl6uniprot
Mylkuniprot
Mylk2uniprot
Diap1uniprot
Actbuniprot
Actg1uniprot
Gsk3buniprot
Catnbuniprot
Pik3cauniprot
Pik3cduniprot
Pik3r1uniprot
Pik3r2uniprot
Pik3cguniprot
Pik3r5uniprot
Pik3r4uniprot
Pik3cbuniprot
Ptenuniprot
Vav1uniprot
Rac1uniprot
Rac2uniprot
Rac3uniprot
Pak1uniprot
Pak3uniprot
Pak2uniprot
Pak4uniprot
Pak7uniprot
Pak6
Elk1uniprot
Pdgfcchemical
Pdgfduniprot
Vegfauniprot
Vegfbuniprot
Vegfcuniprot
Bcar1uniprot
Crkuniprot
Crk1uniprot
Rapgef1chemical
Brafuniprot
Bad
Bcl2uniprot
Birc2uniprot
Birc3uniprot
Birc4uniprot
Mapk8uniprot
Mapk9uniprot
Jununiprot
Ccnd1uniprot
Ccnd2uniprot
Ccnd3uniprot
Cdc42uniprot
Mapk7uniprot
LOC235580
Phosphatidylinositiolchemical
signaling system
Cell Motility
Integrin alpha
Integrin beta
ITGA
ITGB
ECM-receptor interactions
Cytokine-cytokine receptor interactions
Receptor Tyrosine Kinases
RAF
MEK hmdbid:HMDB00474
ERKenzymeuniprot
PKCenzymeuniprot
PIP2uniprot
PIP3uniprot
DNACHEBI:16991
Apoptosis
Cell Cycle
DNACHEBI:16991
Cell Proliferation
Wnt Signaling
FA turnover
Regulation of
actin cytoskeleton
Actinuniprot
Polymerizationchemical
Stress Fiber/FA
formation
Filopodia
Lamellipodia
formation
Cell Survival
-p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
-p
+p
+p
-p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p

GPML Annotator: Mm_G13_Signaling_Pathway.gpml


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Arhgdiguniprot
Arhgdibuniprot
Ppp1cbuniprot
Rhpn1uniprot
Cdc42uniprot
Rac1uniprot
Rps6kb1uniprot
Map3k4uniprot
Mapk10uniprot
Calm1uniprot
Pak3uniprot
Cfl1uniprot
Mybphuniprot
Rtknuniprot
Rhoauniprot
Arhgef1uniprot
Gna13uniprot
Diap1uniprot
Pfn1uniprot
Pip5k2auniprot
Sh3md2
p140 Sra-1
Myl1uniprot
Pik3r2uniprot
Was
Wasluniprot
Iqgap1uniprot
Zfp29uniprot
Cfl2uniprot
Limk1uniprot
Cituniprot
Tnk2uniprot
Rock1uniprot
Rock2uniprot
Pik3cduniprot
Pik3cauniprot
Pkn1uniprot
13
Activated Rho A
Cytokinesis
Actinuniprot
Membrane
Ruffling
Anti-Apoptotic
Actin Polymerization
Polymerizationchemical
Filopodia Formation
Actin Reorganization
Stress Fiber
Disappearance
Disassembly of Actin
G
Cell-Cell Adhesion
Contraction & Actin-Myosin
Interaction, Focal Adhesion
Stress Fiber Contraction

GPML Annotator: Mm_G_Protein_Signaling.gpml


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Gnao1uniprot
Gnazuniprot
Gnai1uniprot
Gnai2uniprot
Gnai3uniprot
Gna11uniprot
Gna14uniprot
Gna15uniprot
Gna12uniprot
Gna13uniprot
Arhgef1uniprot
Slc9a1uniprot
Itpr1uniprot
Hras1uniprot
Nrasuniprot
Krasuniprot
Rhoauniprot
Adcy6uniprot
Adcy7uniprot
Adcy8uniprot
Prkar2auniprot
Prkar2buniprot
Prkacauniprot
Adcy9uniprot
Prkar1auniprot
Adcy1uniprot
Adcy3uniprot
Prkacg
Gnasuniprot
Gnaluniprot
Gnao1uniprot
Adcy4uniprot
Adcy5uniprot
Pde1buniprot
Pde1cuniprot
Pde4duniprot
Pde7auniprot
Pde7buniprot
Pde8auniprot
Gnaquniprot
Prkar1buniprot
Adcy2uniprot
Calm1uniprot
Prkcauniprot
Prkcb1uniprot
Prkccuniprot
Prkcduniprot
Prkciuniprot
Prkchuniprot
Prkcmuniprot
Prkcquniprot
Prkczuniprot
Plcb3uniprot
Ppp3cauniprot
Ppp3cbuniprot
Ppp3ccuniprot
Gnb1uniprot
Gnb2uniprot
Gnb3uniprot
Gnb4uniprot
Gnb5uniprot
Gngt1uniprot
Gng2uniprot
Gng3uniprot
Gng4uniprot
Gng5uniprot
Gng7uniprot
Gng8uniprot
Pde1auniprot
Kcnj3uniprot
Prkceuniprot
Rrasuniprot
Prkacbuniprot
Gng11uniprot
Gng12uniprot
Gng13uniprot
Akap1uniprot
Akap2uniprot
Akap3uniprot
Akap4uniprot
Akap7uniprot
Akap8uniprot
Akap9
Akap10uniprot
Akap12
Pde3auniprot
Pde4buniprot
Pde10achemical
cAMP hmdbid:HMDB00058
IP3
Ca
++
s
G
G
G
q
i
12/13
DAGuniprot
Cytoskeletal
Changes
Cell
Response
Cell
Response
Transcription
Transcription
cAMP hmdbid:HMDB00058
Phosphatase 2B
Protein Kinase Auniprot
Phosphodiesteraseschemical
Adenylate Cyclasesuniprot
Protein Kinase Cuniprot
G
G
beta & gamma
AKAPs

GPML Annotator: Mm_Glucocorticoid_Mineralocorticoid_Metabolism.gpml

Cyp11a1uniprot
Hsd3b1uniprot
Cyp11b2uniprot
Hsd3b1uniprot
Cyp11b2uniprot
Hsd3b1uniprot
Hsd3b4uniprot
Hsd3b6uniprot
Hsd3b2uniprot
Hsd3b3uniprot
Hsd3b5uniprot
(R)20-hydroxysteroid Dh
Cortisone beta-reductase
20b-Hydroxysteroid Dh
3a-Hydroxysteroid Dh
3-Oxo-5b-Steroid Dh
Cyp17a1uniprot
Cyp21a1uniprot
Cyp17a1uniprot
Hsd11b1uniprot
Hsd11b2uniprot
Akr1c21
HO
O
HO
Cholesterol hmdbid:HMDB00067
From Cholersterol Biosynthesis
Progesterone hmdbid:HMDB01830
Signaling
Steroid HormoneCHEBI:26764
Pregnenolone hmdbid:HMDB00253
17-a-OH-Pregnenolonechemical
HO
=O
CH
OH
17-a-OH-Progesteronechemical
and Metabolism
Substrates in
have strucutures shown
11-Deoxycorticosterone hmdbid:HMDB00016
C
=O
CH
C
=O
CH
C
O
=O
CH
C
3
3
3
2
OH
HO
OH
=O
CH
C
3
O
O
=O
CH
C
2
OH
HO
OH
11-Deoxycortisol hmdbid:HMDB00015
Cortisol hmdbid:HMDB00063
Cortisone hmdbid:HMDB02802
18-Hydroxy-Corticosteronechemical
O
=O
CH
C
2
OH
C
O
H
HO
Aldosterone hmdbid:HMDB00037
5b-Pregnan-18-alchemical
3a,11b,21-Trihydroxy-20-Oxo-chemical
5b-Pregnan-18-alchemical
11b, 21-Dihydroxy-3,20-
17a,21-Dihydroxy-5b-chemical
Pregnane-3,11,20-trionechemical
Urocortisone hmdbid:HMDB00903
Urocortisol hmdbid:HMDB00949
Cortisol hmdbid:HMDB00063
Cortolone hmdbid:HMDB03180
Pregnane 3,20-dione hmdbid:HMDB03759
11b,17a 21-Trihydroxy-5b
Glucuronides hmdbid:HMDB03141
3a-OH-5b-Pregnane-20-onechemical
5b-Pregnane-3,20-dione hmdbid:HMDB03759
HO
CH
C
3
H
H
Corticosterone hmdbid:HMDB01547
-OH
Pregnanediol hmdbid:HMDB04025
GlucocorticoidsCHEBI:24261
*
*
*
Progesterone Degradation
teal
To Androgen Synthesis
3B-OH-delta-Steroid Dh

GPML Annotator: Mm_Gluthation_Metabolism_KEGG.gpml

1.8.1.13
Anpepuniprot
Gpx3uniprot
1.8.4.4
1.8.4.1
2.8.1.3
1.8.5.1
1.8.4.3
1.8.3.3
1.11.1.12
1.8.4.7
1.8.4.2
1.5.4.1
G6pdxuniprot
1.1.1.43
Idh1uniprot
Gsruniprot
Gssuniprot
Gclcuniprot
3.4.11.4
Anpepuniprot
Oplahuniprot
2.3.2.4
2.3.2.4
2.3.1.80
6.3.1.8
3.5.1.78
Gpx1uniprot
Gpx2uniprot
Gpx4uniprot
MGI:1915562
Gstm2uniprot
Gstt1uniprot
Gstt2uniprot
Gstm3uniprot
Gclmuniprot
Ggt1uniprot
Ggt1uniprot
Ggt1uniprot
Gsta5uniprot
Gsta2uniprot
Ggtla1uniprot
Ggtla1uniprot
Ggtla1uniprot
Glutamate metabolism
Taurine and hypotaurine
Cyanoaminochemical
Cysteine metabolism
Amino acid metabolism
L-Amino AcidCHEBI:15705
5-Oxoproline hmdbid:HMDB00267
L-Cysteine hmdbid:HMDB00574
L-Glutamate hmdbid:HMDB00148
Glycine hmdbid:HMDB00123
Cysteinyl-Glycinechemical
(5-L-Glutamyl)
Glutathione hmdbid:HMDB00125
g-L-Glutamyl-L-cysteine hmdbid:HMDB01049
Bis-g-glutamylcystinechemical
Gluthatione
NADPH hmdbid:HMDB00221
NADP+ hmdbid:HMDB00217
RX
R-S-GlutathioneCHEBI:17021
Glutamylcysteinyl-chemical
L-Glutamate hmdbid:HMDB00148
R-S-Alanylchemical
Glycine hmdbid:HMDB00123
R-S-Alaninechemical
Acetyl-CoA hmdbid:HMDB01206uniprot
R-S-Mercapturonatechemical
(reduced)
glycylspermidinechemical
glycine hmdbid:HMDB00123
metabolism
acid metabolism
g-Glutamylchemical
Cycle
-L-amino acidchemical
glutathione recycling
Glutathione utilization
Glutathione hmdbid:HMDB00125
utilization
(oxidized)

GPML Annotator: Mm_Glycogen_Metabolism.gpml

Pgm1uniprot
Ugp2uniprot
Gyg1uniprot
Gys1uniprot
Gys3uniprot
Branching Enzymeenzyme
Debranching Enzymeenzyme
Pygmuniprot
Gsk3buniprot
Phka1uniprot
Phkg1uniprot
Phkg2uniprot
Ppp2r5euniprot
Ppp2r5cuniprot
Ppp2cauniprot
Ppp2cbuniprot
Ppp2r4uniprot
Ppp2r3auniprot
Pygluniprot
Phka2uniprot
Ppp2r5d
Ppp2r1auniprot
Ppp2r2auniprot
Ppp2r5auniprot
Ppp2r5b
Glycogen hmdbid:HMDB00757
Glucose hmdbid:HMDB00122
Glucose-6-phosphate hmdbid:HMDB01401
Glucose-1-phosphate hmdbid:HMDB01586
Glycogen (n+1)
UDP-Glucose +
Glycogen hmdbid:HMDB00757
Glycolysis
Glycogen (n-1) + Glucose-1-phosphate
Degradation
Synthesis
Phosphorylase Kinase B
cAMP hmdbid:HMDB00058
Ser/Thr Protein Phosphatase 2A

GPML Annotator: Mm_Glycolysis_and_Gluconeogenesis.gpml

Pgk2uniprot
Pgk1uniprot
Hk1uniprot
Hk2uniprot
G6pcuniprot
Gpi1uniprot
Pfkmuniprot
Pfkluniprot
Pfkpuniprot
Fbp1uniprot
Fbp2uniprot
Fbp3uniprot
Aldoauniprot
Aldocuniprot
Tpi1uniprot
LOC14433
Gapdsuniprot
Pgam2uniprot
Eno1uniprot
Eno3uniprot
Eno2uniprot
Pkm2uniprot
Pklruniprot
Ldh1uniprot
Ldh2uniprot
Ldh3uniprot
Pdha1uniprot
Pdha2uniprot
Pcxuniprot
Gckuniprot
Pck1uniprot
Pdhbuniprot
Dlatuniprot
Dlduniprot
Pdhxuniprot
Mdh1uniprot
Got1uniprot
Got2uniprot
Mdh2uniprot
Hk3uniprot
Aldobuniprot
Pgam1uniprot
Glucose hmdbid:HMDB00122
3-Phosphoglycerate hmdbid:HMDB00807
2-Phosphoglyceratechemical
Pyruvate hmdbid:HMDB00243
LactateCHEBI:24996
Fructose-1,6-bisphosphate hmdbid:HMDB01058
Fructose-6-phosphate hmdbid:HMDB00124
Glucose-6-phosphate hmdbid:HMDB01401
1,3-Bisphosphoglycerate hmdbid:HMDB01270
Phosphoenolpyruvate hmdbid:HMDB00263
Dihydroxyacetone hmdbid:HMDB01882
Phosphate hmdbid:HMDB01429
3-phosphatechemical
Glyceraldehyde-chemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Oxaloacetate hmdbid:HMDB00223
Aspartate hmdbid:HMDB00191
Oxaloacetate hmdbid:HMDB00223
Malate hmdbid:HMDB03256
Malate hmdbid:HMDB03256
Pyruvate hmdbid:HMDB00243
TCAuniprot
Cycle
Aspartate hmdbid:HMDB00191
Glycolysis
Gluconeogenesischemical
Mitochondrion
Cytosol

GPML Annotator: Mm_GPCRDB_Class_A_Rhodopsin-like.gpml


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Chrm1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Adra1auniprot
Adra1buniprot
Adra1duniprot
Adra2buniprot
Adra2cuniprot
Adra2auniprot
Adrb1uniprot
Adrb2uniprot
Adrb3uniprot
Drd3uniprot
Drd4uniprot
Hrh1uniprot
Hrh2uniprot
Htr1buniprot
Htr1duniprot
Htr1auniprot
Htr1funiprot
Htr2auniprot
Htr2buniprot
Htr2cuniprot
Htr4uniprot
Htr5auniprot
Htr5buniprot
Htr6uniprot
Htr7uniprot
Agtr1uniprot
Agtr1buniprot
Agtr2uniprot
Nmbruniprot
Grpruniprot
Brs3uniprot
Bdkrb2uniprot
Bdkrb1uniprot
C3ar1uniprot
C5r1uniprot
Fpr-rs2
Fpr-rs1
Fpr1uniprot
Fprl1uniprot
Fpr-rs4
Fpr-rs3
Agtrl1uniprot
Il8rbuniprot
Ccr1uniprot
Ccr1l1uniprot
Ccr2uniprot
Ccr3uniprot
Ccr4uniprot
Ccr5uniprot
Ccr6uniprot
Ccr8uniprot
Ccr9uniprot
Ccbp2uniprot
Ccrl2uniprot
Cxcr3uniprot
Cxcr4uniprot
Blr1uniprot
Cx3cr1uniprot
Cckaruniprot
Cckbruniprot
Mc1runiprot
Mc2runiprot
Mc4runiprot
Mc3runiprot
Mc5runiprot
Npy1runiprot
Npy2runiprot
Ppyr1uniprot
Npy5runiprot
Npy6runiprot
Gpr83uniprot
Ntsr1uniprot
Ntsr2uniprot
Oprd1uniprot
Oprk1uniprot
Oprm1uniprot
Oprl1uniprot
Sstr1uniprot
Sstr2uniprot
Sstr3uniprot
Sstr4uniprot
Sstr5uniprot
F2runiprot
Avpr1auniprot
Avpr1buniprot
Avpuniprot
Oxtruniprot
Galr1uniprot
Galr3uniprot
Galr2uniprot
F2rl3uniprot
F2rl1uniprot
F2rl2uniprot
Gpr37uniprot
Gpr37l1uniprot
Gpr33uniprot
Cmklr1uniprot
Gpr44uniprot
Gpr30uniprot
Nmur1uniprot
Fshruniprot
Lhcgruniprot
Tshruniprot
Rhouniprot
Opn1mwuniprot
Opn1swuniprot
Rgruniprot
Opn4uniprot
Rrhuniprot
Opn3uniprot
Olfr19uniprot
Olfr1355
Olfr870
Olfr159
Olfr157
Olfr156
Olfr155
Gabbr1uniprot
Q9EPG0
Olfr71
Olfr708
Olfr17
Q9EPV1
Olfr716
Olfr715
Olfr713
Olfr15uniprot
Olfr707
Olfr714
Olfr710
Olfr70
Q9EQ94
Olfr948
Olfr971
Olfr955
Olfr930
Olfr148uniprot
Olfr933
Olfr144uniprot
Olfr926
Olfr938
Olfr943
Olfr242
Olfr146uniprot
Olfr934
Olfr959
Olfr960
Olfr961
Olfr143uniprot
Olfr968
Olfr27
Olfr44
Olfr970
Olfr480uniprot
Olfr893
Olfr160
Olfr957
Olfr954
Olfr945
Olfr937
Olfr888
Olfr145uniprot
Olfr878
Olfr874
Olfr889
Olfr876
Olfr887
Olfr894
Olfr151uniprot
Olfr49
Olfr749
Olfr2
Olfr6uniprot
Olfr711
Olfr16
Olfr706
Olfr701
Olfr705
Olfr703
Olfr704
Ptger1uniprot
Ptger2uniprot
Ptgdruniprot
Ptger3uniprot
Ptger4uniprot
Ptgfruniprot
Ptgiruniprot
Tbxa2runiprot
Adora2auniprot
Adora2buniprot
Adora3uniprot
P2ry2uniprot
P2ry1uniprot
P2ry6uniprot
P2ry4uniprot
Gpr35uniprot
Ltb4r1uniprot
Sucnr1uniprot
Cnr2uniprot
Cnr1uniprot
Ptafruniprot
Trhr2
Trhruniprot
Gpr50uniprot
Mtnr1auniprot
Gpr87uniprot
P2ry12uniprot
P2ry13uniprot
P2ry14uniprot
Gpr27uniprot
Mas1uniprot
Cmkor1uniprot
Tcp10cchemical
Gpr19uniprot
Gpr3uniprot
Gpr12uniprot
Gpr63uniprot
Gpr45uniprot
Cysltr1uniprot
Gpr65uniprot
Gpr34uniprot
Gpr109buniprot
Ednrbuniprot
Avpr2uniprot
Oxtuniprot
Olfr944
Olfr972
AmineCHEBI:32952
Acetylcholine (muscarinic)
Adrenoceptors
Alpha Adrenoceptors
Beta Adrenoceptors
Dopamine hmdbid:HMDB00073
Histamine hmdbid:HMDB00870
PeptideCHEBI:16670 CHEBI:16670
Angiotensinuniprot
Bombesinuniprot
Bradykininuniprot
C5a anaphylatoxinuniprot
Fmet-leu-phe
APJ like
Interleukin-8uniprot
Chemokine
C-C Chemokine
C-X-C Chemokine
CCKuniprot
Melanocortinchemical
Neuropeptide Yuniprot
Neurotensinuniprot
Opioid
Somatostatin
Thrombinenzymeuniprot
Vasopressin-like
Galaninuniprot
Proteinase activated
GPR37 / endothelin B-like
Chemokine receptor-like
Neuromedin U
Hormone protein
Follicle stimulating hormone
Lutropin-choriogonadotropic hormone
Thyrotropin
(Rhod)opsin
Rhodopsin Vertebrate
Rhodopsin Other
Olfactory
Olfactory type 3
ProstanoidCHEBI:26347
ProstaglandinCHEBI:26333
Prostacyclin hmdbid:HMDB01335
Thromboxane hmdbid:HMDB03208
Nucleotide-like
Adenosine hmdbid:HMDB00050
Purinoceptors
Cannabis
Platelet activating factor
Melatonin hmdbid:HMDB01389
Class A Orphan/other
Thyrotropin-releasing hormone & Secretagogue
Endothelin

GPML Annotator: Mm_GPCRDB_Class_B_Secretin-like.gpml

Calcrluniprot
Calcruniprot
Crhr2uniprot
Crhr1uniprot
Gcgruniprot
Glp1runiprot
Ghrhruniprot
Pthr1uniprot
Adcyap1r1uniprot
Vipr1uniprot
Vipr2uniprot
Cd97uniprot
Emr1uniprot
Cd97uniprot
Calcitoninuniprot
Corticotropin releasing factoruniprot
Glucagonuniprot
Growth hormone-releasing hormoneuniprot
Parathyroid hormone
PACAPuniprot
Vasoactive intestinal polypeptideuniprot
EMR1uniprot

GPML Annotator: Mm_GPCRDB_Class_C_Metabotropic_glutamate_pheromone.gpml

Grm1uniprot
Grm3uniprot
Grm8uniprot
Casruniprot
V2R2
V2r1buniprot
V2r14
V2r4
V2r1
V2r2
Gabbr1uniprot
Gprc5duniprot
Metabotropic glutamatechemical
Extracellular calcium-sensing
Putative pheromone Receptors
GABA-B
Orphan GPRC5

GPML Annotator: Mm_GPCRDB_Other.gpml


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Smouniprot
V1ra2uniprot
V1ra7uniprot
V1ra9uniprot
V1ra8uniprot
V1ra6uniprot
V1ra5uniprot
V1ra4uniprot
V1ra3uniprot
V1ra1uniprot
V1rb2uniprot
V1rb4uniprot
V1rb7uniprot
V1rb8uniprot
V1rb9uniprot
V1rb1uniprot
V1rb6uniprot
V1rb3uniprot
V1rc4
V1rc2
V1rc1
V1rc3
V1rc6
V1rc7
V1RC9
V1rc5
V1rc8
V1rd7
V1rd1
V1rd2
V1rd3
V1rd6
V1rd14
V1rd9
V1rd4
Gpr132uniprot
Gpr73uniprot
Ltb4r2uniprot
Gpr84uniprot
Mrgprhuniprot
Gpr146uniprot
Grca
Dfyuniprot
Gpr88uniprot
Cysltr1uniprot
Celsr2uniprot
Celsr1uniprot
Gpr115uniprot
Gpr56uniprot
Drd2uniprot
Gpr143uniprot
Olfr154uniprot
Xcr1uniprot
Gpr2uniprot
Ccr7uniprot
Adora1uniprot
Adora3uniprot
Drd1auniprot
Edg5uniprot
Ednrauniprot
Gpr7uniprot
Mc4runiprot
Grm1uniprot
Tacr3uniprot
Fzd1uniprot
Fzd5uniprot
V2r3
V2r5
V2r6
V2r7
Gprc2a-rs1
Gprc2a-rs2
Gprc2a-rs3
Sstr5uniprot
Olfr1355
Olfr1353
Calcruniprot
Casruniprot
Olfr10uniprot
Olfr11uniprot
Olfr12uniprot
Olfr13uniprot
Olfr7uniprot
Olfr1uniprot
Olfr3uniprot
Olfr5uniprot
Olfr6uniprot
Olfr8uniprot
Olfr9uniprot
Mtnr1buniprot
Oprk1uniprot
Olfr4uniprot
Q61071
Drd5uniprot
Htr1duniprot
Htr1auniprot
Olfr32
Olfr20
Olfr30
Olfr28
Olfr19uniprot
Olfr25
Olfr33
Olfr18
Olfr22-ps1
Olfr24
Olfr29-ps1
Olfr31
Olfr27
Olfr26
Htr1da
Htr1db
Gpr37l1uniprot
Oprm1uniprot
Edg8uniprot
Edg1uniprot
Cnr1uniprot
Adrb2uniprot
Ghsruniprot
Tas1r1uniprot
Adrb1uniprot
Gpr34uniprot
Olfr701
Fzd7uniprot
Cd97uniprot
Rrhuniprot
6530406P05Rikchemical
Gpr39uniprot
Gpr83uniprot
Q9EPV2
Olfr395
Olfr397
Olfr23
Q9EPY6
Q9EPY8
Olfr402
Olfr410
Olfr412
Trhr2
Q9ERW4
Irx6uniprot
Q9ERX0
Q9ERX4
Q9ERX6
Q9ERY0
Q9ERY2
Olfr394
Q9ERY7
Celsr3uniprot
Q9ESF9
Olfr2
Q9ESG1
Q9JHH0
Q9JHK3
Fzd2uniprot
Q9JM17
Q9JM18
Q9JM19
Olfr161
Q9JM21
Q9JM22
Q9JM23
Q9JM24
Q9JM25
Q9JM26
Q9JM27
Q9JM28
Q9JM29
Q9JM30
Q9JM31
Q9JM33
Q9JM34
Olfr403
Q9JM36
Q9JM37
Olfr382
Q9JM39
Q9JM40
Q9JM41
Q9JM42
Oprl1uniprot
Opn1lw
Pthr2uniprot
Fzd9uniprot
Q9WU87
Olfr642
Olfr586
Gabbr1uniprot
Olfr138
Olfr62
Olfr61
Olfr60
Olfr59
Olfr58
Olfr56
Olfr57
Olfr55
Olfr54
Olfr53
Olfr52
Olfr51
Olfr50
Olfr48
Olfr47
Olfr46
Olfr45
Olfr44
Olfr43uniprot
Olfr42
Vipr1uniprot
Smoothened
Vomeronasal receptors (V1R & V3R)
Putative / unclassified GPCRs
Other Chemokine Receptors
Fragments

GPML Annotator: Mm_Hedgehog_Netpath_10.gpml

Ptch2uniprot
Shh
Cdc2auniprot
Ptch1uniprot
Ptch2uniprot
Dhhuniprot
Smouniprot
Ihhuniprot
Ptch1uniprot
Ptch2uniprot
Ihhuniprot
Gli3uniprot
Ski
Sufuuniprot
Sap18uniprot
Sin3auniprot
Gli1uniprot
Gas1uniprot
Crebbpuniprot
Dyrk1auniprot
Gli2chemical
Stk36uniprot
Sufuuniprot
Cdc2auniprot
CCNB1uniprot
Gli1uniprot
Gli2chemical
Gli3uniprot
Ptch1uniprot
Sufuuniprot
Rab23uniprot
Rab23uniprot
CCNB1uniprot
Smouniprot
Igf2uniprot
Dhhuniprot
Shh
Shh
Dhhuniprot
Ihhuniprot
Shh
Hhipuniprot
Hhipuniprot
Hhipuniprot
Ptch1uniprot
Translocation
Plasma membrane
Cytoplasm
Endosome
NucleusCHEBI:33252
CY->NU
CY->NU
CY->NU
CY->NU
PM->EN
CY->NU
CY->PM
PM->EN
Molecular Association
Ligand
Receptor
Molecule in the pathway
Gene Symbol
Activationchemical
D
Inhibitionchemical
Accession Number: NetPath_10; cellmap:10
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
PM
CY
EN
NU
D
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Methylationchemical
Demethylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Extracellular
EC
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Palmitoylationchemical
Glycosylation

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GPML Annotator: Mm_HSP70_and_Apoptosis.gpml

Map3k1uniprot
Casp8uniprot
Casp3uniprot
Fadduniprot
Bid
Casp2uniprot
Casp6uniprot
Casp7uniprot
Hspa1auniprot
Fasuniprot
Casp8uniprot
Pdcd8uniprot
Cycsuniprot
Apaf1uniprot
Casp9
Cycsuniprot
Nfkb1uniprot
Hspa1auniprot
Hspa1auniprot
Fadduniprot
Tnfrsf1auniprot
Ripk1uniprot
Mapk10uniprot
TNF-alphauniprot
STRESS
Mitochondria
APOPTOSIS
CELL SURVIVAL
Ik alpha
degradation of
Activationchemical
of proteins
degradation
(activation of NFkB)
Inhibitionchemical
Apoptosome
Inhibitionchemical
NF-kB
FAS-Ligand
Proteasomeenzyme
pathway
Inhibitionchemical
Inhibitionchemical

GPML Annotator: Mm_Hypertrophy_model.gpml

Zfhx1auniprot
Myoguniprot
Il1auniprot
?
Eif4euniprot
Atf3uniprot
Ifnguniprot
Dusp14uniprot
Nr4a3uniprot
MINORuniprot
Wdr1uniprot
Jund1uniprot
Il1r1uniprot
Cyr61uniprot
Gdf8uniprot
Eif4ebp1uniprot
Vegfauniprot
Il18uniprot
Adam10uniprot
Ifrd1uniprot
Ankrd1uniprot
Hbegfuniprot
-634
-698
+1
?
angiogenesis
protein synthesis
proliferative response
+500
+296
correlate to all 4 MINOR probes
HB-EGF correlated

GPML Annotator: Mm_Id_NetPath_5.gpml

Id1uniprot
Id2uniprot
Id3uniprot
Id4uniprot
Id2uniprot
Rb1uniprot
Rbl2uniprot
Rbl1uniprot
Tcfe2auniprot
Myod1uniprot
CDK2uniprot
Ccna2uniprot
Ccne1uniprot
Elk1uniprot
Elk4uniprot
Elk3uniprot
Psmd4uniprot
Hes1uniprot
Pax5uniprot
Pax2uniprot
Pax8uniprot
Myf5uniprot
Myf6uniprot
Myoguniprot
Tcf12uniprot
Srebf1uniprot
Mscuniprot
IFI16uniprot
Bmp2uniprot
Bmpr2uniprot
Vegfauniprot
Flt1uniprot
Kdruniprot
Smad1uniprot
Smad4uniprot
Smad5uniprot
Atf3uniprot
Smad3uniprot
Tgifuniprot
Acvrl1uniprot
Smad4uniprot
Smad5uniprot
Smad1uniprot
TCR
LCKuniprot
RASuniprot
MAPKenzymeuniprot
ERKenzymeuniprot
Igf1runiprot
Igf1uniprot
Irs1uniprot
PI3Kuniprot
Ctnnb1uniprot
Tertuniprot
Nfkb1uniprot
Relauniprot
Bmp6uniprot
Cd40lguniprot
Ngfbuniprot
Atf3uniprot
Smad3uniprot
Egfuniprot
Tcf7l2uniprot
Gene Symbol
ID Gene Regulation
D
D
D
D
D
Control
Ligand
Receptor
Molecule in the Pathway
P
P
P
CY -> NU
Cytoplasm
Extracellular
Proteins in a complex interaction
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Activationchemical
Translocation
CY
EC
Accession Number: NetPath_5; cellmap:5
Enzyme complex
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Inhibitionchemical
Recruitment
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
Mitochondria
MT
NucleusCHEBI:33252
NU
PM
Plasma membrane

GPML Annotator: Mm_IL-1_NetPath_13.gpml

Il1buniprot
Il1rnuniprot
Il1rapuniprot
Il1r1uniprot
Il1auniprot
Il1buniprot
Il1rnuniprot
Il1r2uniprot
Il1r2uniprot
Il1rapuniprot
Il1r2uniprot
Myd88uniprot
Irak1uniprot
Il1r1uniprot
Il1r1uniprot
Irak1uniprot
Traf6uniprot
Irak1uniprot
Traf6uniprot
Traf6uniprot
Irak1uniprot
Traf6uniprot
Sirpauniprot
Il1auniprot
Irak2chemical
Irak1uniprot
Il1auniprot
Il1buniprot
Sirpauniprot
Irak1uniprot
Traf6uniprot
Traf6uniprot
Gene Symbol
Il1auniprot
Il1buniprot
CAPN1uniprot
CAPNS1uniprot
CASP1uniprot
SQSTM1uniprot
PTPN11uniprot
PTPN11uniprot
IRAK3uniprot
IRAK4uniprot
IRAK4uniprot
Irak4uniprot
PLCG1uniprot
MAPK1uniprot
MAPK1uniprot
AKT1uniprot
MAP3K7IP2uniprot
MAP3K7IP2uniprot
MAP3K7IP2uniprot
MAP3K7IP2uniprot
MAP3K7IP2uniprot
MAP3K7IP2uniprot
MAP3K7uniprot
MAP3K7uniprot
MAP3K7uniprot
MAP3K7uniprot
MAP3K7uniprot
MAP3K7uniprot
MAP3K7IP1uniprot
MAP3K7IP1uniprot
MAP3K7IP1uniprot
MAPK8uniprot
CHUKenzymeuniprot
CHUKenzymeuniprot
MAP2K1uniprot
MAPK3uniprot
TOLLIPuniprot
TOLLIPuniprot
PELI1uniprot
PELI1uniprot
MAP3K14uniprot
MAP3K14uniprot
IKBKAPuniprot
RELAuniprot
RELAuniprot
NFKBIAuniprot
NFKBIAuniprot
NFKBIBuniprot
NFKB1uniprot
PRKCZuniprot
D
CY -> NU
PM -> CY
PM -> CY
D
D
Accession Number: NetPath_13
D
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Autophosphorylationchemical
Dephosphorylationchemical
Palmitoylationchemical
Ubiquitination
Proteolytic cleavage
Glycosylation
Acetylationchemical
Sumoylationchemical
Methylationchemical
Recruitment
Activationchemical
Inhibitionchemical
Translocation
PM
Plasma membrane
CY
Cytoplasm
NU
NucleusCHEBI:33252
EN
Endosome
GO
Golgi apparatus
MT
Mitochondria
CY->EX
CY->EX
Deubiquitination
Deacetylationchemical
Desumoylation
Demethylationchemical
EC
Extracellular
D
D
D
CY -> NU
CY -> NU
Control

GPML Annotator: Mm_IL-2_NetPath_14.gpml

Il2rguniprot
Il2rbuniprot
Il2rauniprot
Il2uniprot
Il2uniprot
Il2uniprot
Jak1uniprot
Jak3uniprot
Jak2uniprot
Lckuniprot
PIK3R1uniprot
Pik3r2uniprot
Ptpn6uniprot
Mapk1uniprot
Mapk3uniprot
Gab2uniprot
Sykuniprot
Irs1uniprot
Irs2uniprot
Stam2uniprot
Stamuniprot
Socs3uniprot
Plcb1uniprot
RPS6KB1uniprot
Pik3cauniprot
Pik3cbuniprot
Pik3cduniprot
Pik3cguniprot
Fynuniprot
Akt1uniprot
Foxo3a
Tertuniprot
Lyn
Ptpn11uniprot
Shc1uniprot
Raf1uniprot
Grb2uniprot
Ptk2buniprot
Cd53uniprot
Icam1uniprot
Sos1uniprot
Socs1uniprot
Cishuniprot
Gnb2l1uniprot
Crkluniprot
Cbluniprot
Shbuniprot
Crkuniprot
Nmiuniprot
Ets1uniprot
Ets2uniprot
Nr3c1uniprot
Prkczuniprot
Itm2buniprot
Bcl2uniprot
IFNA1uniprot
Frap1uniprot
Hsp90aa1uniprot
Mknk1uniprot
Eif4euniprot
Creb1uniprot
Map2k1uniprot
Map2k2uniprot
Vav1uniprot
Stat5auniprot
Stat5buniprot
Mapk1uniprot
Mapk3uniprot
Nfkb1uniprot
Relauniprot
Ybx1uniprot
Nfkb1uniprot
Relauniprot
Ybx1uniprot
Tertuniprot
Akt1uniprot
Raf1uniprot
Krasuniprot
Mapk8uniprot
Mapk14uniprot
Mapkapk2uniprot
Mapk9uniprot
Chukuniprot
Eif3s9uniprot
Akt1uniprot
Stat3uniprot
Stat5auniprot
Stat5buniprot
Stat1uniprot
Crkuniprot
Il2uniprot
Il2uniprot
Molecular association
Translocation
Autophosphorylationchemical
Phosphorylationchemical
Inhibitionchemical
Activationchemical
D
D
D
D
D
D
D
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> PM
CY -> NU
PM -> CY
D
D
Ligand
Receptor
Molecule in the pathway
D
D
D
Gene Symbol
Accession Number: NetPath_14
Proteins in a complex interaction
Enzyme complex
Reactions through unknown mechanisms/molecules
Plasma membrane
NucleusCHEBI:33252
(Protein-protein interaction)
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitolyationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Desumoylation
Ubiquitination
Deubiquitination
Sumoylationchemical
Recruitment
Control
CY
EC
EN
ER
GO
MT
MT
PM
Cytoplasm
Extracellular
Endoplasmic reticulum
Endosome
Golgi apparatus
Mitochondrion
NU
NU
NucleusCHEBI:33252

GPML Annotator: Mm_IL-3_NetPath_15.gpml

IL3uniprot
Il3rauniprot
IL3uniprot
IL3uniprot
CSF2RBuniprot
Il3rauniprot
CSF2RBuniprot
Pik3cauniprot
Pik3cduniprot
Hras1uniprot
Tecuniprot
Vav1uniprot
Jak1uniprot
Jak2uniprot
Ptpn6uniprot
Ptpn11uniprot
Lyn
Sykuniprot
Hckuniprot
Fynuniprot
Lckuniprot
Stat1uniprot
Stat5auniprot
Stat6uniprot
Stat5buniprot
Stat3uniprot
RARAuniprot
Rxrauniprot
PIK3R1uniprot
Pik3r2uniprot
Akt1uniprot
Ywhazuniprot
Fesuniprot
Cishuniprot
Gnb2l1uniprot
Prkcb1uniprot
Shc1uniprot
Ywhaquniprot
Ywhabuniprot
Gab2uniprot
Grb2uniprot
Sos1uniprot
Inpp5d
Gab1uniprot
Rapgef1chemical
Crkluniprot
Cbluniprot
Crkuniprot
PILRBuniprot
Bad
Bcl2l1uniprot
Bcl2uniprot
Baxuniprot
Bcl2l11uniprot
Ppp2cauniprot
Creb1uniprot
Ptk2uniprot
Pxnuniprot
Srcuniprot
Socs2uniprot
Socs3uniprot
Dnm1uniprot
Vcluniprot
Raf1uniprot
Map2k1uniprot
Rac1uniprot
Rac2uniprot
Mapk8uniprot
Mapk1uniprot
Mapk3uniprot
Gata1uniprot
Gata2uniprot
Prkacauniprot
Pak1uniprot
Shc1uniprot
Prkcauniprot
Prkcauniprot
Nfkb1uniprot
Nfkb1uniprot
Slc2a1uniprot
Slc2a1uniprot
Bad
Mapk3uniprot
Tyk2uniprot
Gsk3auniprot
Gsk3buniprot
Kcnip3uniprot
Mapk7uniprot
Foxo1uniprot
Hspb1uniprot
Mapk14uniprot
Atf2uniprot
ATF1uniprot
Mrasuniprot
Krasuniprot
Rps6kb2uniprot
Rap1auniprot
Birc5uniprot
Mapkapk2uniprot
Sfpi1uniprot
Cdc42uniprot
Bmxuniprot
Tnfrsf1buniprot
Id1uniprot
Selpuniprot
Fcer2auniprot
Mapk9uniprot
Chek1uniprot
Matkuniprot
Mmp2uniprot
Mmp9uniprot
Gene Symbol
IL3uniprot
Molecular Association
Cytoplasm
NucleusCHEBI:33252
Autophosphorylationchemical
Phosphorylationchemical
D
CY->PM
CY->NU
CY->PM
CY->NU
D
D
Activationchemical
Plasma membrane
CY->PM
D
MT->CY
D
D
D
D
D
D
D
D
D
D
D
D
D
D
D
Mitochondrion
Accession Number: NetPath_15
Molecule in the pathway
Receptor
Ligand
Proteins in a complex interaction
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Translocation
Inhibitionchemical
PM
CY
NU
MT
Enzyme complex
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Dephosphorylationchemical
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Deacetylationchemical
Acetylationchemical
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
MA
MA
MA
MA
MA
MA

GPML Annotator: Mm_IL-4_NetPath_16.gpml

Il2rguniprot
Il4rauniprot
Il4uniprot
Fesuniprot
Inpp5d
Ptpn6uniprot
Ptpn11uniprot
Jak1uniprot
Irs1uniprot
Il4uniprot
Il4rauniprot
Il13ra1uniprot
Jak2uniprot
Tyk2uniprot
Jak1uniprot
PIK3R1uniprot
Pik3r2uniprot
Prkczuniprot
Stat6uniprot
Pawruniprot
Irs2uniprot
Jak3uniprot
Grb2uniprot
Sos1uniprot
Cxcr4uniprot
Adrbk2uniprot
Ptk2uniprot
Shc1uniprot
Plcg1uniprot
HIST2H3Cuniprot
Crebbpuniprot
Ep300
Mapk14uniprot
Mapk11uniprot
Atf2uniprot
Cbluniprot
Stat6uniprot
Stat6uniprot
Stat5auniprot
Socs5uniprot
Stat6uniprot
Mapk1uniprot
Mapk3uniprot
Mapk14uniprot
Dok2uniprot
Rasa1uniprot
Nfkb1uniprot
Relauniprot
Bad
NCF1uniprot
Pik3cauniprot
Pik3cduniprot
Bcl2l1uniprot
Socs1uniprot
RPS6KB1uniprot
Hmga1uniprot
Ets1uniprot
Socs3uniprot
Stat1uniprot
Srcuniprot
Elk1uniprot
Akt1uniprot
Prkcduniprot
Prkcnuniprot
Prkciuniprot
Prkcduniprot
Prkcnuniprot
Prkciuniprot
Prkczuniprot
Nfkb1uniprot
Sfpi1uniprot
Lckuniprot
Fynuniprot
Stamuniprot
Stat6uniprot
Jak2uniprot
Gene Symbol
Translocation
Cytoplasm
Plasma membrane
NucleusCHEBI:33252
CY -> NU
D
D
D
D
CY -> PM
CY -> PM
CY -> PM
CY -> PM
CY -> NU
D
D
D
Ligand
Receptor
Molecule in the pathway
D
Inhibitionchemical
D
Accession Number: NetPath_16
Proteins in a complex interaction
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Dephosphorylationchemical
Activationchemical
(Protein-protein interaction)
Acetylationchemical
PM
CY
NU
Enzyme complex
Autophosphorylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
EC
Extracellular
EN
Endosome
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Control

GPML Annotator: Mm_IL-5_NetPath_17.gpml

Il5uniprot
Il5uniprot
Il5rauniprot
CSF2RBuniprot
Shc1uniprot
Ptpn11uniprot
CSF2RBuniprot
Dnm2uniprot
Prkcb1uniprot
Mapk1uniprot
Mapk3uniprot
SHC2uniprot
Mapk14uniprot
Nfkbiauniprot
Ptk2buniprot
Pik3cguniprot
Map2k2uniprot
PIK3R1uniprot
Pik3r2uniprot
Ptpn6uniprot
Nfkb1uniprot
Mapk9uniprot
Grb2uniprot
Lyn
Unc119uniprot
Crkluniprot
Raf1uniprot
Krasuniprot
Sykuniprot
Sdcbpuniprot
Sox4uniprot
Socs1uniprot
Ywhazuniprot
Hckuniprot
Akt1uniprot
Rps6ka1uniprot
Foxo3a
Nfkb1uniprot
Gsk3auniprot
Pla2g4auniprot
Vav1uniprot
Hcls1uniprot
Cbluniprot
Apsuniprot
Jununiprot
Btkuniprot
Gsk3buniprot
Atf2uniprot
Elk1uniprot
Il2rbuniprot
Stat5auniprot
Stat5buniprot
Crkluniprot
Alox5uniprot
Alox5uniprot
Baxuniprot
Baxuniprot
Prkcduniprot
Prkcduniprot
Il5rauniprot
CSF2RBuniprot
Ctnnb1uniprot
Ctnnb1uniprot
Hras1uniprot
Rap1gap
Ccnd3uniprot
Cdkn1buniprot
Rapgef1chemical
Alox5apuniprot
Rac1uniprot
Icam1uniprot
ICAM3uniprot
Itgb2uniprot
Itgamuniprot
Pim1uniprot
Jak1uniprot
Jak2uniprot
Stat3uniprot
Stat1uniprot
Stat5buniprot
Stat5auniprot
(Protein-protein interaction)
Translocation
Autophosphorylationchemical
Recruitment
Inhibitionchemical
Activationchemical
Proteins in a complex interaction
Enzyme complex
Cytoplasm
NucleusCHEBI:33252
Plasma membrane
Control
Ubiquitination
Mitochondria
D
D
D
D
D
D
D
D
D
CY->NU
CY->NU
CY->NU
CY->MT
CY->PM
PM->NU
PM->NU
PM->NU
D
D
D
D
D
Ligand
Receptor
Molecule in the pathway
Gene Symbol
D
Accession Number: NetPath_17
Molecular association
D
Reaction through unknown mechanisms/molecules
PM
CY
NU
MT
D
D
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Deubiquitination
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO

GPML Annotator: Mm_IL-6_NetPath_18.gpml

Il6uniprot
Il6rauniprot
Il6rauniprot
Il6stuniprot
Il6stuniprot
Fesuniprot
Tecuniprot
Btkuniprot
Jak2uniprot
Ptpn11uniprot
Jak1uniprot
Tyk2uniprot
Shc1uniprot
Grb2uniprot
Stat3uniprot
Sos1uniprot
Vav1uniprot
Mapk1uniprot
Gab1uniprot
PIK3R1uniprot
Pik3r2uniprot
Stat1uniprot
Stat1uniprot
Stat1uniprot
Stat3uniprot
Stat1uniprot
Stat3uniprot
Stat3uniprot
Stat3uniprot
Mapk14uniprot
Mapk14uniprot
Sgkuniprot
Sgkuniprot
Nfkb1uniprot
Nfkb1uniprot
Nlkuniprot
Hras1uniprot
Ncoa1uniprot
Crebbpuniprot
Rac1uniprot
Cdk9uniprot
Daxxuniprot
Ar
Hdac1uniprot
Prkcduniprot
Ptk2buniprot
Gab2uniprot
Map2k4uniprot
Hsp90aa1uniprot
Socs3uniprot
Fosuniprot
Jununiprot
Tcf1uniprot
Cebpbuniprot
Erbb2uniprot
Erbb3uniprot
Hckuniprot
Lyn
Cebpbuniprot
Raf1uniprot
Casp3uniprot
Casp9
Ppp2cauniprot
Ppp2cbuniprot
Ppp2r1auniprot
Ppp2r1buniprot
Ppp2r2auniprot
Ppp2r2buniprot
Ppp2r2cuniprot
3222402P14Rikchemical
PPP2R3Buniprot
Ppp2r4uniprot
Ppp2r5auniprot
Ppp2r5b
Ppp2r5cuniprot
Ppp2r5d
Ppp2r5euniprot
Ep300
Map2k6uniprot
Cdk5uniprot
MAPTuniprot
Rps6ka2uniprot
Mapk3uniprot
Fgruniprot
Plcg1uniprot
Map3k4uniprot
Rb1uniprot
Akt1uniprot
Bad
Gsk3buniprot
Foxo1uniprot
Map2k1uniprot
Map2k2uniprot
Eif4euniprot
Eif2auniprot
Mapk8uniprot
Ptk2uniprot
Pxnuniprot
Foxo3a
Mllt7uniprot
Inpp5d
Inppl1
RPS6KB1uniprot
Eif4ebp1uniprot
Bmxuniprot
Fynuniprot
Cd40uniprot
Stat3uniprot
Stat5auniprot
Stat5buniprot
Stat3uniprot
Stat3uniprot
Mapkapk2uniprot
Map3k7uniprot
Map3k7uniprot
Hspb1uniprot
Il6uniprot
Cdk5r1uniprot
Autophosphorylationchemical
Early Endosomes
Inhibitionchemical
Translocation
Cytoplasm
CY->NU
Phosphorylationchemical
Dephosphorylationchemical
Acetylationchemical
CY->NU
CY->NU
D
D
D
D
D
D
CY->EN
CY->NU
CY->NU
D
D
D
D
D
Ligand
Receptor
Molecule in the pathway
CY->NU
Activationchemical
Complex formation
Gene Symbol
D
D
Accession Number: NetPath_18
Proteins in a complex interaction
Enzyme complex
(Protein-Protein interaction)
D
Reactions through unknown mechanisms/molecules
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
CY
Extracellular
EC
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
NU
NucleusCHEBI:33252
PM
Plasma membrane
Molecular association

GPML Annotator: Mm_IL-7_NetPath_19.gpml

IL7uniprot
Il7runiprot
Jak3uniprot
Il2rguniprot
Jak1uniprot
Fynuniprot
Lyn
Stat5auniprot
Stat5buniprot
Stat3uniprot
PIK3R1uniprot
Ptk2buniprot
Irs1uniprot
Irs2uniprot
Akt1uniprot
Stat1uniprot
Stam2uniprot
Stamuniprot
Baxuniprot
Bad
Foxo3a
Gsk3buniprot
Foxo1uniprot
Rb1uniprot
Ccnd2uniprot
Ccna2uniprot
Cdk4uniprot
CDK2uniprot
Cltcuniprot
Bcl2l11uniprot
Mcl1uniprot
Blkuniprot
Mapk1uniprot
Mapk3uniprot
Cblbuniprot
Shc1uniprot
Grb2uniprot
Sos1uniprot
Cbluniprot
Irf1uniprot
Muc1uniprot
Gene Symbol
Hras1uniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
D
D
D
PM
CY
NU
EN
GO
MT
Plasma membrane
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Autophosphorylationchemical
Dephosphorylationchemical
Palmitoylationchemical
Ubiquitination
Proteolytic cleavage
Glycosylation
Acetylationchemical
Sumoylationchemical
Methylationchemical
Recruitment
Activationchemical
Inhibitionchemical
Translocation
Cytoplasm
NucleusCHEBI:33252
Endosome
Golgi apparatus
Mitochondrion
Accession Number: NetPath_19
EC
Extracellular
Deacetylationchemical
Demethylationchemical
Desumoylation
Deubiquitination
Control

GPML Annotator: Mm_IL-9_NetPath_20.gpml

Il9uniprot
Il9runiprot
Il2rguniprot
Irs1uniprot
PIK3R1uniprot
Irs2uniprot
Grb2uniprot
Htatipuniprot
Stat3uniprot
Stat3uniprot
Jak1uniprot
Vcpuniprot
Jak3uniprot
Map2k2uniprot
Mapk1uniprot
Mapk3uniprot
Map2k1uniprot
Shc1uniprot
Stat1uniprot
Stat5auniprot
Stat5buniprot
Akt1uniprot
Ptpn11uniprot
Tyk2uniprot
Socs3uniprot
Molecular association
CY->NU
Translocation
CY
NU
Autophosphorylationchemical
Phosphorylationchemical
D
Reaction through unknown mechanisms/molecules
D
D
D
Inhibitionchemical
Receptor
Ligand
Activationchemical
Accession Number: NetPath_20
Gene Symbol
Molecule in the pathway
Cytoplasm
NucleusCHEBI:33252
Proteins in a complex interaction
Proteins in a complex interaction
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
PM
Plasma membrane
(Protein-protein interaction)

GPML Annotator: Mm_Inflammatory_Response_Pathway.gpml

H2-Eb1uniprot
Il10rauniprot
Fcgr1uniprot
Mmp2uniprot
Tnfuniprot
Ltauniprot
Il1auniprot
Il1buniprot
Il6uniprot
Fn1uniprot
Lama5uniprot
Lamb1-1uniprot
Lamc1uniprot
Lamb2uniprot
Lamc2uniprot
Vtnuniprot
Col3a1uniprot
Col1a1uniprot
Col1a2uniprot
Il5rauniprot
Tnfsf5uniprot
Cd80uniprot
Cd86uniprot
Tnfrsf5uniprot
Cd28uniprot
Tnfrsf1auniprot
Tnfrsf1buniprot
Lckuniprot
Zap70uniprot
Il2rauniprot
Il2rbuniprot
Il2rguniprot
Il2uniprot
Il4uniprot
Il5uniprot
Ifnguniprot
Thbs3uniprot
Thbs1uniprot
Il4rauniprot
Igh-Ia
Igh-6
B-cell
TH-cell
Fibroblast
Blood or Lymph
Epithelium
Macrophage
Inflammation
Early Response
Fibrotic Response

GPML Annotator: Mm_Insulin_Signaling.gpml


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Insruniprot
Igf1runiprot
Irs1uniprot
Irs2uniprot
Irs4chemical
Pik3cauniprot
Pik3cbuniprot
Pik3cguniprot
Pik3cduniprot
Pik3r1uniprot
Pik3r2uniprot
Pik3r3uniprot
Pik3r4uniprot
Pik3c2auniprot
Pik3c3uniprot
Pik3c2guniprot
Pdpk1uniprot
Akt1uniprot
Akt2uniprot
Gsk3buniprot
Gsk3auniprot
Slc2a4uniprot
Ptenuniprot
Prkciuniprot
Prkczuniprot
Pscd3uniprot
Arf6uniprot
Arf1uniprot
Inpp4auniprot
Trib3uniprot
Foxo1uniprot
Pfkmuniprot
Gys1uniprot
Gab1uniprot
Shc1uniprot
Shc2uniprot
Grb2uniprot
Ptpn11uniprot
Sos1uniprot
Sos2uniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
Map2k3uniprot
Map2k4uniprot
Map2k5uniprot
Map2k6uniprot
Map3k1uniprot
Map3k2uniprot
Map3k3uniprot
Map3k4uniprot
Mapk3uniprot
Mapk4uniprot
Mapk1uniprot
Mapk6uniprot
Mapk13uniprot
Mapk9uniprot
Mapk10uniprot
Map4k1uniprot
Map3k5uniprot
Map3k10
Mapk8uniprot
Mapk14uniprot
Map3k8uniprot
Map3k12uniprot
Map4k2uniprot
Map3k7uniprot
Map3k11
Map2k7
Mapk11uniprot
Map3k9
Map4k4uniprot
Mapk7uniprot
Map3k13
Map4k3uniprot
Map3k6
Mink1uniprot
Mapk12uniprot
Map4k5uniprot
Map3k14uniprot
Rps6kb1uniprot
Rps6ka2uniprot
Rps6ka3uniprot
Rps6kb2uniprot
Rps6ka1uniprot
Rps6ka5uniprot
Rps6ka6
Rps6ka4uniprot
Irs3chemical
Ppp1ccuniprot
Ptprf
Cbluniprot
Cblbuniprot
Cblcuniprot
Rapgef1chemical
Cap1uniprot
Sorbs1uniprot
Rhojuniprot
Snx26uniprot
Rhoquniprot
Crkuniprot
Flot1uniprot
Flot2uniprot
MGI:1345171
Ptpn1uniprot
Frap1uniprot
Eif4euniprot
Eif4ebp1uniprot
Lipeuniprot
Gys2uniprot
Egr1uniprot
Fosuniprot
Jununiprot
Slc2a1uniprot
Grb10uniprot
Shc3uniprot
Hras1uniprot
Rraduniprot
Inppl1
Prkcauniprot
Prkcb1uniprot
Prkcquniprot
Prkchuniprot
Prkcduniprot
Enpp1uniprot
Gyg1uniprot
Pfkluniprot
Tsc1uniprot
Rhebuniprot
Tsc2uniprot
Rab4auniprot
Stxbp4uniprot
Vamp2uniprot
Snap25uniprot
Snap23uniprot
Ehd1uniprot
Ehd2uniprot
Myo1cuniprot
Kif5buniprot
Kif3auniprot
Sgkuniprot
Sgk2uniprot
Sgkluniprot
Foxo3a
Tbc1d4uniprot
Elk1uniprot
Srfuniprot
Grb14uniprot
Stxbp1uniprot
Stxbp2uniprot
Stxbp3uniprot
Stx4auniprot
Mapk8uniprot
Socs1uniprot
Socs3uniprot
Prkaa1uniprot
Prkaa2uniprot
Ikbkbuniprot
Xbp1uniprot
Rac1uniprot
Rac2uniprot
Glucose Transport
Modulators of Insulin Action
MEK/MAP Kinases
Insulin Receptor Substrates
PI 3-Kinase
p90 Rsk Kinases
Transcriptional Regulators & Immediate Early Genes
Vesicular Trafficking
p70 S6 Kinases
Metabolic Regulation
Ras-MAPK Signaling
PDK/Akt Signaling
Tor Signaling
Translation Regulation

GPML Annotator: Mm_Integrin-mediated_cell_adhesion_KEGG.gpml

Cdc42uniprot
Shc1uniprot
Shc3uniprot
Arafuniprot
Brafuniprot
Mapk4uniprot
Mapk7uniprot
Arhgef7uniprot
Rac1uniprot
Rac2uniprot
Rac3uniprot
Pdpk1uniprot
Vav2uniprot
Vav3uniprot
Sos1uniprot
Zyxuniprot
Cav1uniprot
Cav3uniprot
Fynuniprot
Grb2uniprot
Sepp1uniprot
Ha-Rasuniprot
Ptk2uniprot
Ptk2uniprot
Rhouniprot
Cskuniprot
Bcar1uniprot
Srcuniprot
Akt1uniprot
Akt2uniprot
MYO-P
MYO
Capn2uniprot
Capn11
Capn6uniprot
Pak3uniprot
Pak6
Vaspuniprot
Map2k5uniprot
Map2k6uniprot
Mapk12uniprot
Rapgef1chemical
Mapk1uniprot
Mapk6uniprot
Map2k2uniprot
Pelouniprot
Itga2uniprot
Itga3uniprot
Itga4uniprot
Itga5uniprot
Itga6uniprot
Itga7uniprot
Itga8
Itga9
Itga10
Itga11uniprot
Itga2buniprot
Itgaeuniprot
Itgaduniprot
Itgaluniprot
Itgamuniprot
Itgavuniprot
Itgaxuniprot
Itgb1uniprot
Itgb2uniprot
Itgb3uniprot
Itgb4uniprot
Itgb5uniprot
Itgb6uniprot
Itgb7uniprot
Itgb8
Srcuniprot
Mapk10uniprot
Ilkuniprot
Cav2uniprot
Capn3uniprot
Capn9uniprot
Actn1uniprot
Git2uniprot
Akt3uniprot
Capns1uniprot
Rap1auniprot
Rap1buniprot
Raf1uniprot
Tln1uniprot
Sorbs1uniprot
Crkuniprot
Dock1uniprot
PI5K
Pik3r2uniprot
p110uniprot
Rock1uniprot
Rock2uniprot
Mylk2uniprot
Capn1uniprot
Capn5uniprot
Capn7uniprot
Capn10uniprot
Pak2uniprot
Pak1uniprot
Pak4uniprot
Map2k3uniprot
Map2k1uniprot
Vcluniprot
Tns
Pxnuniprot
CAPNuniprot
PI3Kuniprot
Phosphatidylinositiolchemical
signaling system
C3Guniprot
F-actinchemical
p130 Cas
MEK hmdbid:HMDB00474
ERKenzymeuniprot
PAK
F-actinchemical
cell motility
cell maintenance
cell maintenance
RAF
CAPNuniprot
PAK
ECMuniprot
Integrin alpha
Integrin beta
ITGA
ITGB
cell proliferation

GPML Annotator: Mm_Irinotecan_pathway_PharmGKB.gpml

Ces2uniprot
Ces1uniprot
Irinotecanchemical
SN-38
CYP3A4uniprot
CYP3A5uniprot
M4
APCuniprot
NPCuniprot
CYP3A4uniprot
CYP3A5uniprot
CYP3A4uniprot
Ces1uniprot
Ces2uniprot
SN-38
Ugt1a1uniprot
Ugt1a9
Abcc1uniprot
Abcc2uniprot
SN-38
Ces1uniprot
Ces2uniprot
Abcc1uniprot
Abcc2uniprot
Abcg2uniprot
Ugt1a6uniprot
Ugt1a1uniprot
Ugt1a10
SN-38G
Ces2uniprot
Ces1uniprot
Bcheuniprot
Abcc2uniprot
Ugt1a6uniprot
Abcc1uniprot
SN-38
Irinotecanchemical
Irinotecanchemical
Neutropenia
Liver Cell
Diarrhea
Intestine
Model human liver cell showing blood, bile and
intestinal compartments, indicating tissue
involvment of genes in the irinotecan pathway.

GPML Annotator: Mm_Kit-Receptor_NetPath_6.gpml

Grb7uniprot
PIK3R1uniprot
Pik3r2uniprot
Shc1uniprot
CSF2RBuniprot
Mpdzuniprot
Grb2uniprot
Socs6uniprot
Socs4uniprot
Socs5uniprot
Cishuniprot
Cltcuniprot
Crkuniprot
Srcuniprot
Plce1uniprot
Jak2uniprot
Grapuniprot
Ptpru
AI586015
Prkcauniprot
Plcg1uniprot
Stat1uniprot
Stat5auniprot
Stat5buniprot
Pik3cguniprot
Apsuniprot
Grb10uniprot
Akt1uniprot
Tecuniprot
Lyn
Dok1uniprot
Dok1uniprot
Ptpn6uniprot
Ptpn11uniprot
Eporuniprot
Rps6ka1uniprot
Mitfuniprot
Mapk1uniprot
Abl1uniprot
Inpp5d
Fgruniprot
Hckuniprot
Yes1uniprot
Rasa1uniprot
Fesuniprot
Crkluniprot
Cbluniprot
Socs1uniprot
Vav1uniprot
Vav2uniprot
Matkuniprot
Bad
Sos1uniprot
Ep300
Fynuniprot
Prkcb1uniprot
Hras1uniprot
Raf1uniprot
Spred2uniprot
Spred1uniprot
Sh3kbp1uniprot
Cblbuniprot
Tnfrsf10buniprot
Btkuniprot
Kit
Kitluniprot
Kit
Kitluniprot
Map2k1uniprot
Stat3uniprot
p85 complex
Molecular association
Phosphorylationchemical
Activationchemical
Translocation
Inhibitionchemical
Autophosphorlation
Dephosphorylationchemical
Plasma Membrane
Cytoplasm
NucleusCHEBI:33252
CY->PM
Accession Number: NetPath_6; cellmap:6
Proteins in a complex interaction
Enzyme complex
Receptor
Ligand
Gene Symbol
Molecule in the pathway
(Protein-protein interaction)
D
PM
CY
NU
D
Reaction through unknown mechanisms/molecules
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion

GPML Annotator: Mm_Krebs-TCA_Cycle.gpml

Pdha1uniprot
Pdha2uniprot
Pdhbuniprot
Dlatuniprot
Dlduniprot
Pdhxuniprot
Pdk2uniprot
Pdk3uniprot
Pdk4uniprot
4930402E16Rik
Pcxuniprot
Mdh1uniprot
Mdh2uniprot
Cs
Aco2uniprot
Fh1uniprot
Idh3auniprot
Idh3b
Idh3guniprot
Idh2uniprot
Sdhauniprot
Sdhbuniprot
Sdhcuniprot
Sdhduniprot
Ogdhuniprot
Dlstuniprot
Dlduniprot
Suclg1uniprot
Suclg2uniprot
Sucla2uniprot
Pyruvate hmdbid:HMDB00243
Acetyl-CoA hmdbid:HMDB01206uniprot
Succinate hmdbid:HMDB00254
Malate hmdbid:HMDB03256
alpha-Ketogluteratechemical
Oxaloacetate hmdbid:HMDB00223
Fumarate hmdbid:HMDB00134
Malate hmdbid:HMDB03256
Oxaloacetate hmdbid:HMDB00223
Isocitrate hmdbid:HMDB00193
Fatty Acid Synthesis
Glycolysis
Gluconeogenesischemical
Degradation of Fatty Acids
Containing an Odd Number of Carbons
Electron Transport Chain
Degradation of Fatty Acids
Containing an Even Number of Carbons
Citrate hmdbid:HMDB00094
Succinyl-CoA hmdbid:HMDB01022
Mitochondrion
Cytosol

GPML Annotator: Mm_MAPK_Cascade.gpml

Hras1uniprot
Krasuniprot
Nrasuniprot
Rrasuniprot
Plcb3uniprot
Map3k1uniprot
Map3k2uniprot
Map3k3uniprot
Map2k1uniprot
Map2k2uniprot
Mapk3uniprot
Mapk1uniprot
Jununiprot
Map2k3uniprot
Map2k4uniprot
Brafuniprot
Map2k6uniprot
Mbpuniprot
Mtap2uniprot
Elk1uniprot
Sipa1uniprot
Mapk14uniprot
Map2k7
Raf1uniprot
Arafuniprot
Rasa3uniprot
RapGAPIIchemical
Mapk10uniprot
Map3k12uniprot
Mapk12uniprot
GDP hmdbid:HMDB01201
Activated
GTP hmdbid:HMDB01273
G
i
G
q
and G
g
b
G
Stress Activated Pathways
p38 MAPK Pathway
Growth and Mitogenesis
Apoptosis
NucleusCHEBI:33252
Rap1GAPuniprot

GPML Annotator: Mm_MAPK_signaling_pathway_KEGG.gpml


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Tmem37uniprot
Ntrk1uniprot
Egfruniprot
fgfr
Pdgfrbuniprot
Ngfbuniprot
Bdnfuniprot
Ntf5uniprot
Egfuniprot
Fgf4uniprot
Pdgfbuniprot
Grb2uniprot
Sos2uniprot
Krasuniprot
Nrasuniprot
Mrasuniprot
Gna12uniprot
Gap1m
Rasgrf2
Rasgrp4
Rasgrp1
Nf1uniprot
Rasa1uniprot
Prkcduniprot
Prkccuniprot
Prkcb1uniprot
Prkczuniprot
Prkchuniprot
Prkcduniprot
Il1r2uniprot
Il1r1uniprot
Fasuniprot
Tgfbr1uniprot
Acvr1buniprot
Tgfbr1uniprot
Tgfbr2uniprot
Cd14uniprot
Tnfuniprot
Il1auniprot
Il1buniprot
Fasluniprot
Tgfb3uniprot
Tgfb1uniprot
Tgfb2uniprot
Gadd45auniprot
traf6uniprot
tab2uniprot
ecsitchemical
Daxxuniprot
tab1uniprot
traf2uniprot
Casp1uniprot
Casp3uniprot
Casp9
Casp7uniprot
Casp8uniprot
Casp2uniprot
Casp6uniprot
Rac1uniprot
Rac2uniprot
Cdc42uniprot
Brafuniprot
Raf1uniprot
Mosuniprot
Prkacauniprot
Rap1buniprot
Rap1auniprot
Map4k3uniprot
hgk
hpk1uniprot
Pak1uniprot
Pak2uniprot
Stk3uniprot
mink
gckuniprot
Map3k8uniprot
Map3k1uniprot
mlk3
Map3k3uniprot
lzk
Map3k12uniprot
mltkuniprot
ask2
Map3k5uniprot
Map3k7uniprot
mekk4uniprot
Taok1uniprot
Taok2uniprot
Ppm1buniprot
Map2k5uniprot
Mapk7uniprot
Map2k1uniprot
Map2k2uniprot
Mapk1uniprot
Mapk3uniprot
Mapk4uniprot
Mapk6uniprot
mp1uniprot
Ptpn7uniprot
Ptpn5uniprot
Ptprruniprot
Dusp1uniprot
Dusp6uniprot
Gm337
Dusp7uniprot
Dusp4uniprot
Dusp10uniprot
nikuniprot
Ikbkguniprot
Ikbkbuniprot
Akt1uniprot
Akt2uniprot
Akt3uniprot
Ppp5cuniprot
mkk3uniprot
Map2k6uniprot
Ppm1auniprot
Mapk13uniprot
Mapk12uniprot
Mapk14uniprot
Nfkb1uniprot
Maptuniprot
Stmn1uniprot
Pla2g5uniprot
Pla2g10uniprot
mnk1/2
rsk2uniprot
Atf4uniprot
elk-1chemical
Sap1achemical
Mycuniprot
SRFuniprot
Fosuniprot
Ppp3ccuniprot
Ppp3cauniprot
Ppp3cbuniprot
Ppp3r1uniprot
Ppp3r2uniprot
mkk7
mkk4
Mapk8uniprot
Mapk10uniprot
Mapk9uniprot
Mapk8ip1uniprot
Ptpn7uniprot
Ptpn5uniprot
Ptprruniprot
flnauniprot
Mapk8ip3uniprot
Arrb1uniprot
Arrb2uniprot
Crkuniprot
Crkluniprot
Hspa8uniprot
Hspa1auniprot
Hspa5uniprot
Jununiprot
Jund1uniprot
nfat2/4
Atf2uniprot
Elk-1chemical
Trp53uniprot
sap1achemical
Ddit3uniprot
Max
mef2cuniprot
Hspb2uniprot
Hspb1uniprot
Atf4uniprot
Nr4a1uniprot
prak
Mapkapk2uniprot
msk1/2
Cdc25buniprot
nlkuniprot
Classical MAP kinase Pathway
Ca2+CHEBI:29108
DAGuniprot
LPSCHEBI:16412
DNA damage
JNK & p38 MAP kinase pathway
Serum, cytotoxic drugs, irradiation,
heatshock, reactive oxy species
LPS and other stress
Integrin-mediated
cell adhesion
cAMP hmdbid:HMDB00058
IP3
Heteromeric G-protein
Phosphatidylinositolchemical
signaling system
MAPKKKK
ERK5 pathway
Serum, EGF,
reactive oxygen species,
or Srk tyrosinkinase
downstream
PTPuniprot
MKP
p38uniprot
Proliferation, inflammation, anti-apoptosis
DNACHEBI:16991
DNACHEBI:16991
Proliferation,
differentiation
JNKenzymeuniprot
PTPuniprot
MAPKKKenzymeuniprot
MAPKKenzymeuniprot
MAPKenzymeuniprot
Transcription factors
DNACHEBI:16991
Alzheimer’s disease
Wnt signaling
DNACHEBI:16991
Apoptosis
Proliferation, differentiation,
inflammation
DNACHEBI:16991
Proliferation, differentiation
Cell
Cycle
pathway

GPML Annotator: Mm_Matrix_Metalloproteinases.gpml


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Timp3uniprot
Timp2uniprot
Timp4uniprot
Mmp1auniprot
Mmp8uniprot
Mmp13uniprot
Mmp2uniprot
Mmp9uniprot
Mmp3uniprot
Mmp11uniprot
Mmp7uniprot
Mmp12uniprot
Mmp10uniprot
Mmp14uniprot
Mmp15uniprot
Mmp16uniprot
Mmp17uniprot
Mmp19uniprot
Mmp20uniprot
Mmp24uniprot
Mmp23uniprot
Mmp25
Mmp22
Timp1uniprot
Bsguniprot
Tcf20uniprot
Tnfuniprot
Gelatinases
Collagenases
Stromelysinschemical
Membrane-type MMPs
Matrilysinenzyme
Inhibitors
Enamelysinuniprot
Other
Potential Inducers of Transcription
Metalloelastaseenzyme
Based on Vu & Werb (2000)
Matrix metalloproteinases: effectors of
development and normal physiology.
Genes Dev 14:2123-2133

GPML Annotator: Mm_Mitochondrial_fatty_acid_betaoxidation.gpml

Acadluniprot
Cpt2uniprot
Acadmuniprot
Acsl1uniprot
Pecruniprot
Dciuniprot
Scp2uniprot
Ehhadhuniprot
Acadsuniprot
Acadvluniprot
Cpt1auniprot
Hadhscuniprot
Hadhauniprot
Acsl3uniprot
Acsl4uniprot
Slc25a20uniprot
Long chain Acyl-CoA
Long chain Acyl-CoA
trans-chemical
3-Ketoacyl-CoAchemical
saturated
unsaturated
mitochondrial matrix
cytosol
-Enoyl-CoAchemical
Acyl-CoA (n-2)
2,4 Dienoyl-CoA
Acetyl-CoA hmdbid:HMDB01206uniprot
D
2
3-L-Hydroxyacyl-CoAchemical
Long chain acyl-carnitine
Long chain acyl-carnitine
cis-chemical
D-
-Enoyl-CoAchemical
3
Acyl-CoA dehydrogenases:
Long Chain Fatty Acid

GPML Annotator: Mm_Monoamine_GPCRs.gpml

Drd2uniprot
Drd3uniprot
Drd4uniprot
Drd5uniprot
Htr1auniprot
Htr1buniprot
Htr1duniprot
Drd1auniprot
Htr1funiprot
Htr2auniprot
Htr2buniprot
Htr2cuniprot
Htr4uniprot
Htr5auniprot
Htr5buniprot
Htr6uniprot
Htr7uniprot
Adra1auniprot
Adra1buniprot
Adra1duniprot
Adra2auniprot
Adra2buniprot
Adra2cuniprot
Adrb1uniprot
Adrb2uniprot
Adrb3uniprot
Admruniprot
Hrh1uniprot
Hrh2uniprot
Chrm4uniprot
Chrm1uniprot
Chrm2uniprot
Chrm3uniprot
Htr1duniprot
Chrm5uniprot
Dopamine hmdbid:HMDB00073
Adrenergic
Serotonin hmdbid:HMDB00259
Gi/Go Pathway
Gq/G11 Pathway
Gs Pathway
Gs Pathway
Muscarinic Ach
Histamine hmdbid:HMDB00870
Receptors
Receptors
Receptors
Receptors
Receptors

GPML Annotator: Mm_mRNA_processing_binding_Reactome.gpml

Hnrpa1uniprot
Hnrpa2b1uniprot
Hnrpabuniprot
Hnrpcuniprot
Hnrpkuniprot
Hnrpluniprot
Fusip1uniprot
Snrpd1uniprot
Snrpd2uniprot
Snrpeuniprot
Snrpfuniprot
Snrpguniprot
Cstf1uniprot
Cstf2uniprot
Cpsf3uniprot
Cpsf1uniprot
Cpsf2uniprot
Cstf2tuniprot
Pabpn1uniprot
Lsm2uniprot
Prpf18uniprot
Sfrs1uniprot
Clk1uniprot
Clk4uniprot
U2af2uniprot
Snrpnuniprot
Polr2auniprot
Supt5huniprot
Rnmtuniprot
Rngttuniprot
Ncbp1uniprot
Ncbp2uniprot
Mettl3uniprot
Hnrpa3uniprot
Hnrpduniprot
Rbmxrtuniprot
Hnrph1uniprot
Hnrph2uniprot
Hnrpu
Hnrpmuniprot
Ptbp1uniprot
Snrp70uniprot
Snrpauniprot
Snrpbuniprot
Smc1l1uniprot
Cd2bp2uniprot
Nsep1uniprot
Dhx9uniprot
Snrpd3uniprot
Sfrs8
Sfrs14uniprot
Sfrs12uniprot
Sfrs16uniprot
Fusuniprot
Sf4uniprot
Rbm5uniprot
Cpsf5uniprot
Cpsf4uniprot
MGI:1336880
2610031L17Rik
0610009C03Rik
Txnl4uniprot
Sf3b5uniprot
Sfrs4uniprot
Snrpb2uniprot
Sf3a3uniprot
Snrpa1uniprot
Sf3a1uniprot
Sf3a2uniprot
Sf3b1uniprot
Sf3b2
Sf3b3
Sf3b4
Dhx38
Cdc40uniprot
Dnajc8uniprot
Prpf8uniprot
Phf5auniprot
Prpf4uniprot
Nhp2l1uniprot
Prpf4uniprot
Lsm2uniprot
Nhp2l1uniprot
Prpf8uniprot
Cstf3uniprot
AI462438
Papolauniprot
1500011J06Rik
Ddx1uniprot
Hrmt1l1uniprot
Hrmt1l2uniprot
Pcbp2uniprot
Dicer1uniprot
Ddx20uniprot
Dhx15uniprot
Dhx8
Prpf4buniprot
Nxf1uniprot
Dhx16
Cugbp1uniprot
Rnpc2uniprot
Prpf18uniprot
Brunol4
Nonouniprot
Xrn2uniprot
Spopuniprot
Smn1uniprot
Cugbp2
Ptbp2uniprot
Prpf3uniprot
Fnbp3uniprot
Rbm17uniprot
Lsm7uniprot
2610317D23Rik
Lsm11uniprot
D11Ertd730e
1500034e06rik
Sfrs11
Sfpquniprot
U2af1uniprot
Rbms1uniprot
Rbms2uniprot
Rnu108
Adam5
Afg3l1uniprot
Acin1uniprot
Rnpepuniprot
MGI:1926224
Abcb4uniprot
Cnot4uniprot
BC013481
Dnd1uniprot
Cstf2tuniprot
Cirbpuniprot
Cdk9uniprot
Csaduniprot
Cyp4f18uniprot
Cpeb1
Cpeb3
Cpeb4
Cova1uniprot
Tia1uniprot
Dazap1uniprot
Dazluniprot
MGI:2387367
D15Ertd119e
D5Ertd700e
D8Ertd233euniprot
Elavl1uniprot
Elavl2uniprot
Elavl3uniprot
Elavl4uniprot
Eral1uniprot
AI255183
Eif3s4uniprot
Eif3s9uniprot
Eif4g2uniprot
Ewsr1uniprot
AA407033
AA522010
Pcbp3uniprot
Pcbp4uniprot
Exosc9uniprot
Polr2guniprot
Prkruniprot
2810055E05Rik
Pum1uniprot
Pum2uniprot
Qk
Rad21uniprot
Rae1uniprot
Rnaseluniprot
Rpl12uniprot
Rpl19uniprot
Rpl22uniprot
Rpl26uniprot
Rpl32uniprot
Rpl37uniprot
Rpl39uniprot
Rpl7uniprot
Rpl8uniprot
Rpl9uniprot
Rps11uniprot
Rps13uniprot
Rps14uniprot
Rps20uniprot
Rps23uniprot
Rps24uniprot
Rps27uniprot
Rps28uniprot
Rps29uniprot
Rps4xuniprot
Rps6uniprot
Rps7uniprot
Exosc4uniprot
Sca1uniprot
Scye1uniprot
Slbpuniprot
Snrp1cuniprot
Son
Srp14uniprot
Srp19uniprot
Srp9uniprot
Ssa2uniprot
Nhp2l1uniprot
Stau1uniprot
Tarbp2uniprot
Tenr
Tertuniprot
Trim21uniprot
Tsnuniprot
Wbp4uniprot
Zbp1uniprot
Zfp346uniprot
Zfp385
Auhuniprot
Eif4e2uniprot
Srpk1uniprot
Srpk2uniprot
Ppm1guniprot
Pskh1uniprot
MGI:2661424
SRrp40uniprot
Rnps1uniprot
Srp54uniprot
Clk2uniprot
Clk3uniprot
Sfrs10uniprot
Sfrs2uniprot
Sfrs3uniprot
Sfrs5uniprot
Srrm1uniprot
Sfrs6
Sfrs7uniprot
Sfrs9uniprot
Prp17uniprot
U4 snRNA
Rnu2
Rnu1a1uniprot
Rnu1a2
Rnu1b1
Rnu1b2
Rnu6
U5 snRNA
Hnrpr
Nhp2l1uniprot
Tmed10uniprot
0610009D07Rik
Rnpepl1
1700012H05Rik
Rbm15buniprot
2610102M01Rik
AA589495
AI194270
Safb2uniprot
AI255207
AI255212
AI255215
AI255219
AI255230
D9Mgi24chemical
AI255750
AI255840
AI255847
AI256346
AI256354
AI314192
AI447568
Sfrs12uniprot
AI462171
AI467299
AI503051
AI504630
Ralyuniprot
Htf9cuniprot
Igf2bp1
Igf2bp3
Uhmk1uniprot
Matr3uniprot
Matr3-ps1
Matr3-ps2
Mki67ipuniprot
Spenuniprot
Msi1huniprot
Msi2huniprot
Myef2uniprot
Syncripuniprot
Nsap1l-pending
Zfmluniprot
Ncluniprot
Pspc1chemical
Ppil4uniprot
Ppieuniprot
Ppargc1auniprot
Rbm7uniprot
1500012C14Rik
1600023H17Rik
1700003D06Rik
1700009P03Rikchemical
1700025B16Rik
1700047G05Rik
1700095D18Rik
1810035L17Rik
1810036A22Rik
1810036E18Rik
Rbm18uniprot
2010300K22Rik
2010319N22Rik
2210008M09Rik
Afg3l2uniprot
2310046H11Rik
Rbpms2chemical
Rad52b
2410013L13Rik
Wdr55uniprot
Hnrplluniprot
2810036M01Rik
Rbmx2uniprot
2810411C16Rik
2810441O16Rik
2810442I21Rik
Rbm28uniprot
3000004N20Rik
Hnrpa0
3100004P22Rikchemical
3110061K15Rik
3200001K10Rik
3830425H19Rik
4632417O19Rik
Hnrpfuniprot
4921506I22Rik
Nol8uniprot
4922503N01Rik
4930422M05Rik
Lrrn6a
4930506D01Rik
9130414A06Rik
9430070C08Rik
9530027K23Rik
Tnrc6cchemical
B230118G17Rik
B230333C21Rik
B930007L02Rik
C230097K14Rik
Rbed1
C330027G06Rik
C430048L16Rik
D230005D02Rik
D330023I21Rik
D830027H13Rik
G430095G15Rik
Thoc4uniprot
Refbp2uniprot
Rbm8auniprot
Rbm10uniprot
Rbm11
Rbm12uniprot
Tiaf1uniprot
Tial1uniprot
Traf6uniprot
Tlr5uniprot
Tnrc4
Rnu11
Rnu1a1uniprot
Rnu1b1
Rnu1b2
Rnu1b6
U2af1-rs1uniprot
U2af1-rs2uniprot
Rnu2
V1rc17
Wdr9uniprot
Wbscr1uniprot
A130095G20Rik
AI043106
Rbm3uniprot
Rnaset2uniprot
Rpl38uniprot
1110017C15Rik
4930534J06Rik
Ppp1r8uniprot
Papolguniprot
9630048M01Rik
Aco1uniprot
Adaruniprot
Adarb2uniprot
Adat1
Akap1uniprot
Bard1uniprot
Bat1auniprot
Bicc1chemical
Brca1uniprot
Ciz1chemical
Zfp622uniprot
D19Bwg1357e
D1Pas1uniprot
D1Pas1-rs1uniprot
Imp4uniprot
D3Jfr1uniprot
Exosc5uniprot
Ddx19auniprot
Ddx21uniprot
Ddx24uniprot
Ddx25uniprot
Ddx39uniprot
Ddx3xuniprot
Ddx4uniprot
Ddx41uniprot
AI642080
AI843301
AI844780
AL022933
D12Mgi43chemical
D12Mgi40chemical
AU023006
AU045931
AW049977
AW107884
AW260507
AW553050
BB131279
C79783
C80672
C85084
Ggcxuniprot
Grsf1uniprot
Hdp
Hnrpdl
H2-Bfuniprot
Ppargc1buniprot
Pabpc1uniprot
Pabpc2chemical
Pabpc4chemical
Pabpc5chemical
Poldip3uniprot
Pcolceuniprot
Col4a3
Ppp1r14buniprot
G3bp2-pending
MGI:1351465
Rdbpuniprot
0610009J05Rik
0610033I05Rik
0710005M24Rik
Ilkap
1110034O07Rik
1110037F02Rik
Rbm19uniprot
1200009B18Rik
1300006N24Rik
2410104I19Rik
2410112D09Rik
2600011C06Rik
Rbm13uniprot
2600016C11Rik
2600016F06Rik
Htatsf1uniprot
2610015J01Rik
Sfrs11
2610020N02Rik
2610023M21Rik
2610024A01Rik
2610101N10Rik
Bclaf1uniprot
2610209F03Rik
Hnrpa3uniprot
Rbm17uniprot
2700028P07Rikchemical
Rbm21uniprot
2700077B20Rik
2700088M22Rik
4930554P13Rikchemical
4930562C03Rik
4930565A21Rik
Bolluniprot
4932422E22Rik
4932422M17Rik
4932702K14Rik
Rbm31y
5031411E02Rik
5330419I02Rik
5730453I16Rik
Tdrd7uniprot
5730555F13Rik
5730557B15Rik
5730557H03Rik
6330548G22Rik
Brunol6
Rbms3chemical
6720478K01Rik
8030431D03Rik
Rbm22uniprot
Rbm14uniprot
Rbm16
Rbm4uniprot
Rbm6
Rbm9
Rbmxuniprot
Rbmxrtuniprot
Rbmy1a1
Rbpmsuniprot
Rnu12
Rnpc1uniprot
Rod1uniprot
Sfrs10uniprot
Ssbuniprot
Sbno1chemical
Slc25a4uniprot
Slc6a8uniprot
Sart3uniprot
Synj2uniprot
Taf15
Tardbpuniprot
1110033J19Rik
1190002L16Rik
1190005F20Rik
Eif4e3
Eif4g3uniprot
Lsm8uniprot
2010003O18Rik
Rpl11uniprot
Exosc8uniprot
2400002F11Rik
Rnaseh2auniprot
2410003C20Rik
Exosc7uniprot
Srp68uniprot
2610027L16Rik
Zmat2uniprot
Rpp14uniprot
Ttc14uniprot
Secisbp2uniprot
Lsm1uniprot
2810028N01Rik
Ddx19b
Rps9uniprot
Rnmtl1
4930429A22Rik
4930517K11Rik
Ddx48uniprot
Ddx5uniprot
Ddx56uniprot
Ddx6uniprot
Dkc1uniprot
Eif4a2uniprot
Eif4euniprot
Fbluniprot
Fmr1uniprot
Fxr1huniprot
Fxr2huniprot
Ilf3uniprot
Lgtnuniprot
Lsm4uniprot
Mbnl1uniprot
Mrpl11uniprot
Mrpl23uniprot
Mrps28uniprot
Npm1uniprot
Nufip1uniprot
Nxf7
Oas1auniprot
Oas1buniprot
Oas1g
Oas2
Oas3
Oasl2uniprot
Papolbuniprot
Park7uniprot
Pcbp1uniprot
5 G cap
3
5
3
5
3
5
Polr2auniprot
Spt5uniprot
Rnmt (methyltransferase)
GMP hmdbid:HMDB01397uniprot
mRNA Capping
Processing of Intron-Containing Pre-mRNA
iPo
Cap Binding
Methylation of mRNA
heterogeneous nuclear ribonucleoproteins
Formation of pre-mRNPs
Internal methylation of mRNA
mRNA splicing (major pathway)
pre-mRNA
Primary RNA transcript
hnRNPs
Formation of the Spliceosomal E complex
snRNP Sm core complex
U1 snRNP
3
exon 1
exon 2
intron
GU
A
YYYY
AG
5
SR-binding sites
SR-binding sites
U1 snRNP
U2AF
65
35
RNA helicase A
U2AF
Serine/Argenine Rich Proteins(SR)
mRNA capping
Internal methylation of mRNA
Formation of pre-mRNPs
SR-proteins
Regulation of
Alternative Splicing
Additional Factors
Regulators
splicing factor SF3A
splicing factor SF3B
U2 snRNPs
SF3b14buniprot
SR-proteins
Additional Factors
RNA helicase
U2 snRNP
snRNP Sm core complex
Formation of the Spliceosomal A complex
Formation of the Spliceosomal E complex
Formation of the Spliceosomal A complex
U2 snRNP
3
A
YYYY
AG
5
exon 1
exon 2
U4/U6
U5
Formation of the Spliceosomal B complex
U4 snRNP
U6 snRNP
U5 snRNP
snRNP Sm core complex
U4:U5:U6 tri-snRNP complex
YYYY
AG
5
exon 1
exon 2
A
3
U5
Note: New participating members shown at each step
UG
U6
U2
U4
U1
Formation of the Spliceosomal C complex
Poly(A)-binding protein IIuniprot
CF II
Poly(A) polymerase alphauniprot
CF Ichemical
YYYY
AG
5
exon 2
A
3
UG
exon 1
YYYY
AG
5
A
3
exon 1
exon 2
YYYY
AG
A
5
exon 2
CstF
CFIenzymeuniprot
CF II
Poly(A)pb II
Poly(A) pol
5
3
AAAAAAA
Pi
P-
degraded
SR protein kinases
Additional SR proteins
Putative Alternative Splicing
Accessory Proteins
mRNA splice site selection
hnRNP regulators
RNAi pathway
3
exon 1
Additional Factors
Formation of the Spliceosomal B complex
Formation of the active Spliceosomal C complex
Lariat Formation and 5’-Splice Site Cleavage
Cleavage at the 3’-Splice-Site and Exon Ligation
(1)
(2)
(2a)
(2b)
(2c)
(3)
mRNA 3’-end processing
Cleavage of mRNA at the 3’-end
mRNA polyadenylation
CPSF
CstF
right click on blue text for detailed information
5
3
AAUAAA
CA
ATP hmdbid:HMDB00538
CPSF
splicesome associated helicases
Misc.
Rngtt (capping enzyme)
InterPro Domain Containing:
RNA-binding region RNP-1 (RNA recognition motif)
Gene Ontology: RNA Binding
SR-kinases
Kinases Phosphorylating RS domains?
P
SR-phosphatases
SR-proteins
SR protein phosphatases
SR-repressor proteins

GPML Annotator: Mm_Notch_signaling_KEGG.gpml

RBPSUHLuniprot
PTCRA
CIR hmdbid:HMDB00904uniprot
HDAC2uniprot
HDAC1uniprot
CTBP1uniprot
CTBP2uniprot
LOC330129
CREBBPuniprot
GCN5L2uniprot
PCAFuniprot
DLL1uniprot
DLL3uniprot
DLL4uniprot
JAG1uniprot
JAG2uniprot
LFNGuniprot
MFNGuniprot
RFNGuniprot
NOTCH1uniprot
NOTCH2uniprot
NOTCH3uniprot
NOTCH4uniprot
ADAM17uniprot
APH1Auniprot
APH1Buniprot
TNFuniprot
PSEN1uniprot
PSEN2uniprot
NCSTNuniprot
DVL1uniprot
DVL2uniprot
DVL3uniprot
NUMBuniprot
NUMBLuniprot
DTX1uniprot
DTX2uniprot
DTX3uniprot
DTX4
DTX31
RBP-Juniprot
SKIPuniprot
MAML3uniprot
MAML1uniprot
NCOR2uniprot
HES1uniprot
HES5
NICD
co-repressor complex
DNACHEBI:16991
Notch Intracellular Domain
MAPK signaling pathway
gene expression
S2
S3
Ras/Map

GPML Annotator: Mm_Nuclear_Receptors.gpml

Rxrguniprot
Thrauniprot
Rarbuniprot
Pparauniprot
Pparduniprot
Pparguniprot
Nr1d2uniprot
Nr0b1uniprot
Rorauniprot
Rorbuniprot
Rorcuniprot
Nr1h2uniprot
Nr1h3uniprot
Vdruniprot
Nr1i2uniprot
Nr1i3uniprot
Hnf4auniprot
Nr2e1uniprot
Nr2c2uniprot
Nr2f1uniprot
Nr2f2uniprot
Nr2f6uniprot
Esr1uniprot
Esr2uniprot
Esrrauniprot
Esrrbuniprot
Nr3c1uniprot
Pgruniprot
Ar
Nr4a1uniprot
Nr4a2uniprot
Nr5a1uniprot
Nr5a2uniprot
Rxrbuniprot
Rarauniprot
Rxrauniprot
Rarguniprot
Thrbuniprot
Thyroid Receptor
Peroxisome Proliferator
Nuclear Receptor ROR
Oxysterols Receptor
Vitamin D3 Receptoruniprot
Hepatocyte Nuclear
Orphan Nuclear
Nuclear receptor TLXuniprot
Coup Transcription
Estrogen Receptoruniprot
Steroid Hormone Receptor
Glucocorticoid Receptoruniprot
Progesterone Receptoruniprot
Androgen Receptoruniprot
NR5 SUPERFAMILY
Steroidogenic Receptor
Orphan Receptor
NR0 SUPERFAMILY
NR1 SUPERFAMILY
NR2 SUPERFAMILY
NR3 SUPERFAMILY
NR4 SUPERFAMILY
Orphan Receptor
Activated Receptor
Orphan Nuclear
Receptor
Retinoic Acid Receptor (RAR)
Retinoic Acid hmdbid:HMDB06219
Factor
Factor
Receptor (RXR)
Receptor

GPML Annotator: Mm_Nuclear_receptors_in_lipid_metabolism_and_toxicity.gpml

Cyp7a1uniprot
Cyp7a1uniprot
Cyp7a1uniprot
Cyp4a11uniprot
Pparguniprot
Pparauniprot
Pparduniprot
Abcd3uniprot
Abcd2uniprot
Abca1uniprot
Abca1uniprot
Abca1uniprot
Abcb4uniprot
Abcb11uniprot
Abcb1auniprot
Abcb1buniprot
ABCC2uniprot
Abcc3uniprot
Abcg1uniprot
Abcg5uniprot
abcg6
Nr1h4uniprot
Nr1h3uniprot
Cyp8b1uniprot
Nr1i2uniprot
Nr1i3uniprot
Cyp4b1uniprot
Rarauniprot
Rarguniprot
Cyp3a13uniprot
Vdruniprot
Cyp3a13uniprot
Cyp26a1uniprot
Rarbuniprot
Cyp2e1uniprot
Cyp2c38uniprot
Cyp2c38uniprot
Cyp2b6
Cyp2b6
Cyp1a2uniprot
Cyp24a1uniprot
Cyp2c38uniprot
Cyp3a13uniprot
Cyp27b1uniprot
Right click for comments
Acetyl CoA hmdbid:HMDB01206uniprot
IsoprenoidsCHEBI:24913
Lanosterol hmdbid:HMDB01251
7-DehydroCholesterol hmdbid:HMDB00032
Cholesterol hmdbid:HMDB00067
Oxysterolchemical
Bile AcidsCHEBI:3098
1,25-Dihydroxy-Vitamins D3
Fatty AcidsCHEBI:35366
DIET
XenobioticsCHEBI:35703
DIET
Retinoic Ac
SteroidsCHEBI:35341
Gene expression

GPML Annotator: Mm_Nucleotide_GPCRs.gpml

Adora1uniprot
Adora2auniprot
Adora2buniprot
Adora3uniprot
P2ry1uniprot
P2ry1uniprot
P2ry2uniprot
P2ry4uniprot
P2y5uniprot
P2ry6uniprot
Ltb4r1uniprot
P2Y3uniprot
P2Y9uniprot
Adenosine hmdbid:HMDB00050
Adenine hmdbid:HMDB00034
Gi/Go Pathway
Gs Pathway
Gq/G11 Pathway

GPML Annotator: Mm_Nucleotide_Metabolism.gpml

Adsluniprot
Mthfd2uniprot
Dhfruniprot
Purauniprot
Prps1uniprot
Prps2uniprot
Hprt1uniprot
Oaz1uniprot
Srmuniprot
Sat1uniprot
Rrm1uniprot
Pold1uniprot
Polguniprot
Pola1uniprot
Polbuniprot
Nme2uniprot
Impdh1uniprot
Ribose hmdbid:HMDB00283
PRPP hmdbid:HMDB00280uniprot
SAICAR hmdbid:HMDB00797
AICAR hmdbid:HMDB03192
IMP hmdbid:HMDB00175uniprot
DNACHEBI:16991
DNA Synthesis
dNTPs
dNTPs
GMP hmdbid:HMDB01397uniprot
dNTPs
Xanthine hmdbid:HMDB00292
GMP hmdbid:HMDB01397uniprot
Guanine hmdbid:HMDB00132
Uric Acid hmdbid:HMDB00289
Adenylosuccinate hmdbid:HMDB00536
AMP hmdbid:HMDB00045uniprot
Hypoxanthine hmdbid:HMDB00157
Spermine hmdbid:HMDB01256
Adenine hmdbid:HMDB00034
Spermidine hmdbid:HMDB01257
Putrescine hmdbid:HMDB01414
Ornithine hmdbid:HMDB03374
Polyaminechemical
Synthesis
Monophasphatechemical

GPML Annotator: Mm_Ovarian_Infertility_Genes.gpml

Gdf9uniprot
Gja4uniprot
Gja4uniprot
Pgruniprot
Esr2uniprot
Nr5a1uniprot
Tbpuniprot
Ncor1uniprot
Egr1uniprot
Smpd1uniprot
Zp3uniprot
Zp2uniprot
Figlauniprot
Mlh1uniprot
Bmpr1buniprot
Cyp19a1uniprot
Ptger2uniprot
Lhcgruniprot
Fshruniprot
Dazluniprot
Vdruniprot
Nrip1uniprot
Smpd1uniprot
Inhauniprot
Dmc1huniprot
Smad3uniprot
Atmuniprot
Cebpbuniprot
Cdk4uniprot
Cdkn1buniprot
Ccnd2uniprot
Msh5uniprot
Prlruniprot
Granulosa Cell
Cytoplasm
NucleusCHEBI:33252
Oocyte
NucleusCHEBI:33252
Ooplasm

GPML Annotator: Mm_Oxidative_Stress.gpml

Maoauniprot
Nfixuniprot
Nrf2uniprot
Nfkb1uniprot
Sp1uniprot
Hmox1uniprot
Gpx1uniprot
Gpx3uniprot
Nqo1uniprot
Ugt1a@
Cat
Txn2uniprot
Txnrd1uniprot
Txnrd2uniprot
Gclcuniprot
Gsruniprot
Mt1uniprot
Gstt2uniprot
Mgst1uniprot
Cyp1a1uniprot
Xdhuniprot
Cybauniprot
Fosuniprot
Junbuniprot
Sod2uniprot
Sod1uniprot
Sod3uniprot
Mapk14uniprot
Mapk10uniprot
antioxidant genes
Induction of
Inhibition of oxidases
TF inhibition
repression
TF activation
Immediate-early
gene induction
Reactive Oxygen SpeciesCHEBI:26523
Adaptive response
Repression of ROS-
producing systems
Activationchemical
Stress-regulated MAP kinase

GPML Annotator: Mm_p38_MAPK_signaling_pathway.gpml

Mapk14uniprot
Mapk14uniprot
Map2k6uniprot
Map3k9
Map3k7uniprot
Map3k5uniprot
Mknk1uniprot
prak
Hspb1uniprot
Mapkapk2uniprot
Mapkapk2uniprot
Atf2uniprot
Rps6ka5uniprot
Mef2duniprot
Ddit3uniprot
Elk1uniprot
Stat1uniprot
Max
Mycuniprot
Hmgn1uniprot
Creb1uniprot
Pla2g4auniprot
mkk4
Map3k1uniprot
Rac1uniprot
Cdc42uniprot
Rasuniprot
Tgfbr1uniprot
Tgfb2uniprot
Traddchemical
traff2
Daxxuniprot
ripk1uniprot
Shc1uniprot
Grb2uniprot
ras-gef
Apoptosis
Translation
?
?
?
Stress: Osmotic shock
g-radiation, Anisomycin
Right click for comments
FASL, Inflammatory
Cytokines, UV, etc.
Growth Factors, UV
Trophic Factors, etc.
DNA transcription
Cytokines Production,
Apoptosis, etc.
?
?

GPML Annotator: Mm_Pentose_Phosphate_Pathway.gpml

G6pd2uniprot
G6pdxuniprot
Pgduniprot
Pglsuniprot
Rpeuniprot
Tktuniprot
Taldo1uniprot
Rpiauniprot
Tktuniprot
Glucose-6-Phosphate hmdbid:HMDB01401
6-Phosphoglucono-delta-lactone hmdbid:HMDB01127
6-Phosphogluconate hmdbid:HMDB01316
Ribulose-5-Phosphate hmdbid:HMDB00618
Ribose-5-Phosphate hmdbid:HMDB01548
(Hexose Monophosphosphate Shunt
or Phosphogluconate Pathway)
Fructose-6-Phosphate + Erythose-4-Phosphate
Fructose-6-Phosphate hmdbid:HMDB00124
Sedoheptulose-7-Phosphate hmdbid:HMDB01068
+
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
+
Glycolysis/Gluconeogenesis
Xylulose-5-Phosphate hmdbid:HMDB00868
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
Nucleotidechemical
Biosynthesis

GPML Annotator: Mm_Peptide_GPCRs.gpml

Ntsr2uniprot
Oprk1uniprot
Agtr1uniprot
Agtr1buniprot
Agtr2uniprot
Bdkrb2uniprot
Bdkrb1uniprot
Nmbruniprot
Grpruniprot
Brs3uniprot
Ccr1uniprot
Ccr2uniprot
Ccr3uniprot
Ccr4uniprot
Ccr5uniprot
Ccr7uniprot
Ccr8uniprot
Ccr9uniprot
Gpr2uniprot
Ccr1l1uniprot
Cxcr6
Blr1uniprot
Cxcr4uniprot
Cxcr3uniprot
C3ar1uniprot
C5r1uniprot
Cx3cr1uniprot
Il8rbuniprot
Fpr1uniprot
Fprl1uniprot
Cckaruniprot
Cckbruniprot
Ednrauniprot
Ednrbuniprot
Galr1uniprot
Galr2uniprot
Galr3uniprot
Fshruniprot
Lhcgruniprot
Tshruniprot
Mc2runiprot
Mc1runiprot
Mc3runiprot
Mc4runiprot
Mc5runiprot
Npy1runiprot
Npy2runiprot
Ppyr1uniprot
Npy5runiprot
Npy6runiprot
Ntsr1uniprot
Oprd1uniprot
Oprm1uniprot
Oprl1uniprot
Gnrhruniprot
Trhruniprot
Ghsruniprot
Tacr1uniprot
Tacr2uniprot
Tacr3uniprot
Sstr1uniprot
Sstr2uniprot
Sstr3uniprot
Sstr4uniprot
Sstr5uniprot
Avpr1buniprot
Avpr2uniprot
Oxtruniprot
Ccr6uniprot
Avpr1auniprot
Releasing Hormone
Receptors
Opioid Receptors
Neuropeptide Y Receptorsuniprot
Neurotensin Receptors
Chemokine Receptors
Chemotactic Receptors
Angiotensin Receptors
Bombesin Receptors
Endothelin Receptors
Vasopressin and
Oxytocin hmdbid:HMDB02865uniprot
Galanin Receptors
Receptors
Glycoprotein Hormone
Receptors
Cholecystokinin/
Bradykinin Receptors
Somatostatin Receptors
Tachykinin Receptors
Gq Coupled
Gi Coupled
Gs Coupled
Gastrin Receptors
Melanocortins

GPML Annotator: Mm_Prostaglandin_synthesis_regulation.gpml

Ptgs1uniprot
Ptgs2uniprot
Anxa3uniprot
Anxa2uniprot
Anxa1uniprot
Anxa6uniprot
Anxa4uniprot
Scgb1a1uniprot
Anxa5uniprot
Anxa8uniprot
Hsd11b1uniprot
Ednrbuniprot
Edn1uniprot
Hpgduniprot
Ednrauniprot
Hsd11b2uniprot
Cyp11a1uniprot
Pla2g4auniprot
S100a10uniprot
Ptgisuniprot
Ptgdsuniprot
Tbxas1uniprot
Ptgdruniprot
Ptger1uniprot
Ptger2uniprot
Ptger3uniprot
Ptger4uniprot
Ptgfruniprot
Ptgiruniprot
Tnfrsf1auniprot
Tnfuniprot
PGF2uniprot
PGI2 hmdbid:HMDB01335uniprot
Ca
2+
Prostaglandin H2 hmdbid:HMDB01381
TXA2 hmdbid:HMDB01452
Cortisol hmdbid:HMDB00063
PGE2 hmdbid:HMDB01220
Cell Membrane
PhospholipidsCHEBI:16247
Inactive Metabolites
Cytoplasm
PG Synthases
Cortisone hmdbid:HMDB02802
Cortisol hmdbid:HMDB00063
Arachidonic Acid hmdbid:HMDB01043
Progesterone hmdbid:HMDB01830
Annexinschemical
Ca
2+
PG Receptors
Contraction

GPML Annotator: Mm_Proteasome_Degradation.gpml

Ubcuniprot
Hist1h2acuniprot
H2afxuniprot
H2afzuniprot
Ube1xuniprot
Ube1l
Psmc1uniprot
Nedd4uniprot
Psmc6uniprot
Psmd1uniprot
Psmd2uniprot
Psmd3uniprot
Psmd5uniprot
Psmd4uniprot
Psmc5uniprot
Psmc2uniprot
Psmc3uniprot
Psmc4uniprot
Psma1uniprot
Psma2uniprot
Psmb1uniprot
Psma3uniprot
Psma4uniprot
Psmb3uniprot
Psmb6uniprot
Psmb7uniprot
Psmb5uniprot
Psmb4uniprot
Psme1uniprot
Psme2uniprot
Ifnguniprot
Psmb9uniprot
Psmb10uniprot
Psmb8uniprot
Psme3uniprot
Psmd7uniprot
Psmd6uniprot
Psmd8uniprot
Psmd9uniprot
Psmd10uniprot
Psmd11uniprot
Psmd12uniprot
Psmd13uniprot
Psmc5uniprot
Psma6uniprot
Psma7uniprot
Psma5uniprot
Psmb2uniprot
Rpn2uniprot
Rpn1uniprot
Ube2buniprot
Ube2d2uniprot
Ube2auniprot
Ube2g2uniprot
Ube2e1uniprot
Ube2l3uniprot
Ube2g1uniprot
Ube2huniprot
Ube2nuniprot
Ube2muniprot
Hip2uniprot
Ube2suniprot
Ube2e3uniprot
Ube2r2
Ube2iuniprot
Psmd14uniprot
Trim17uniprot
Hist1h2ahuniprot
Hist2h2acuniprot
Hist1h2akuniprot
Hist1h2abuniprot
Hist1h2aiuniprot
Hist1h2afuniprot
Hist1h2aeuniprot
Hist2h2abuniprot
Hist1h2aguniprot
Hist1h2aouniprot
Hist1h2aduniprot
Hist2h2aa2uniprot
Hist1h2anuniprot
Hist3h2auniprot
Hist2h2aa1uniprot
ATP hmdbid:HMDB00538
AMP Ubiquitin/E1 Complex
Ubiquitin/E2 Complex
E3/Protein
Proteins to be Degraded
Ubiquitin/Protein
Proteasome 26 S
(PA700) (ATP dependent)
p45 ATPase Subunit
Unfolds and Degrades
Intact Proteins
Proteasome 20S
Catalytic Core (p45)
Activators of
Degrades only Peptides
Presentation by MHC class 1
Oxidatively Damaged
Cytosolic Proteins
20S Complex
Lid subunits
Alpha subunits
Beta subunits
Histoneschemical

GPML Annotator: Mm_Regulation_of_Actin_Cytoskeleton_KEGG.gpml

Ins1uniprot
Egfruniprot
Itga1uniprot
F2runiprot
F2
Fn1uniprot
Gna12uniprot
Sos1uniprot
Gna13uniprot
Arhgef6uniprot
Cskuniprot
Vav1uniprot
Bcar1uniprot
Crkuniprot
Ptk2uniprot
Mosuniprot
Map2k1uniprot
Mapk1uniprot
Chrm1uniprot
Gng12uniprot
Fgd1uniprot
Cdc42uniprot
Iqgap1uniprot
Arhgef1uniprot
Diap3uniprot
Baiap2uniprot
Enahuniprot
Was
Arpc5uniprot
Actbuniprot
Rhoauniprot
Rock1uniprot
Grlf1uniprot
Rac1p2chemical
Rac1uniprot
Rac4chemical
Rac3uniprot
Rac2uniprot
Cd14uniprot
Ins2uniprot
Egfuniprot
Fgf1uniprot
Fgf2uniprot
Fgf3uniprot
Fgf4uniprot
Fgf5uniprot
Fgf9uniprot
Fgf14uniprot
Fgf20uniprot
Pdgfbuniprot
Fgf6uniprot
Fgf11uniprot
Fgf16uniprot
Fgf22uniprot
Fgf7uniprot
Fgf12uniprot
Fgf17uniprot
Fgf23uniprot
Fgf8uniprot
Fgf13uniprot
Fgf18uniprot
Pdgfauniprot
Fgf10uniprot
Fgf15uniprot
Fgf21uniprot
Fgfr1uniprot
Fgfr3uniprot
Fgfr2uniprot
Fgfr4uniprot
Pdgfrauniprot
Pdgfrbuniprot
Sos2uniprot
Rrasuniprot
Rras2uniprot
Mrasuniprot
Hras1uniprot
Nrasuniprot
Krasuniprot
Pik3r4uniprot
Pik3c2auniprot
Pik3c2b
Pik3c2guniprot
Pik3c3uniprot
Pik3cauniprot
Pik3cbuniprot
Pik3cduniprot
Pik3cguniprot
9330140K16Rik
Pik3r2uniprot
Pik3r1uniprot
Pik3r3uniprot
Raf1uniprot
Brafuniprot
Map2k2uniprot
Mapk3uniprot
Mapk4uniprot
Mapk6uniprot
Dock1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Bdkrb2uniprot
Bdkrb1uniprot
Chrm5uniprot
Rock2uniprot
Arhgef6uniprot
Arhgef7uniprot
Actg1uniprot
Apcuniprot
Apc2uniprot
Pak1uniprot
Pak2uniprot
Pak3uniprot
Pak4uniprot
Pak6
Pak7uniprot
Pfn1uniprot
Wasf2uniprot
Baiap2uniprot
Arpc5uniprot
Actbuniprot
Actg1uniprot
Abi2uniprot
Nckap1uniprot
Cyfip2chemical
Wasf1uniprot
C3orf10
Tmsb4xuniprot
Vil2uniprot
Pxnuniprot
Git1uniprot
Rdxuniprot
Vil1uniprot
Slc9a1uniprot
Pip5k2auniprot
Msnuniprot
Pip5k1auniprot
Pip5k1buniprot
Pip5k2buniprot
Pip5k1cuniprot
Diap1uniprot
Pfn1uniprot
Pip5k2c
Pip5kl1
Vcluniprot
Actn1uniprot
Ppp1r12auniprot
Mylkuniprot
Pip5k2auniprot
Limk1uniprot
Myl1uniprot
Cfl1uniprot
Myl3uniprot
Ssh1uniprot
Cfl2uniprot
Ssh2uniprot
Ssh3uniprot
Vcluniprot
Gsnuniprot
Myh10uniprot
Actg1uniprot
Actbuniprot
P101-pi3k
Growth Factors
Growth Factor (GF)
RTK
RTK
RASuniprot
Rasuniprot
PI3Kuniprot
PI3Kuniprot
Bradykininuniprot
Acetylcholine hmdbid:HMDB00895
Chemotactic factor
LPSCHEBI:16412
Chemotactic factor
PIP3uniprot
Actinuniprot
polymerizationchemical
Focal adhesion
assembly
PIP2uniprot
PIP2uniprot
?
Stabilization
of actin
Lamellipodia
-p
+p
Actin polymerization
stress fiber
Integrin-mediated
cell adhesion
Actomyosinenzyme
assembly contraction
Focal complex
assembly
Integrin-mediated
cell adhesion
stress fiber
Gene Expression
Cadherin-mediated
cell adhesion
Filipodia
MAPK Signaling
pathway
Actin polymerization

GPML Annotator: Mm_Ribosomal_Proteins.gpml

Rps18uniprot
Rpl3uniprot
Rpl9uniprot
Rpl10auniprot
Arbpuniprot
Rplp1uniprot
Rpl13auniprot
Rpl27auniprot
Rpl5uniprot
Rpl7uniprot
Rpl6uniprot
Rpl7auniprot
Rpl10uniprot
Rpl13uniprot
Rpl19uniprot
Rpl21uniprot
Rpl22uniprot
Rpl28uniprot
Rpl29uniprot
Rpl32uniprot
Rpl32-psuniprot
Rpl35auniprot
Rpl36uniprot
Rps3uniprot
Rps2uniprot
Rps5uniprot
Rps16uniprot
Rps3auniprot
Rps12uniprot
Rps26uniprot
Rpl8uniprot
Rpl26uniprot
Rpl30uniprot
Rpl37auniprot
Rpl41uniprot
Rpl36auniprot
Rps4xuniprot
Rps6uniprot
Rps7uniprot
Rps8uniprot
Rps11uniprot
Rps15uniprot
Rps28uniprot
Rps29uniprot
Fauuniprot
Rplp2uniprot
Rpl12uniprot
Rpl15uniprot
Rpl17uniprot
Rpl11uniprot
Rpl18uniprot
Rpl18auniprot
Rpl23auniprot
Rpl24uniprot
Rpl27uniprot
Rpl31uniprot
1100001I22Rik
Rpl35uniprot
Rpl37uniprot
Rpl38uniprot
Rpl4uniprot
Rpl39uniprot
L40e
Rps10uniprot
S9e
Rps13uniprot
Rps14uniprot
Lamr1uniprot
Rps15auniprot
Rps17uniprot
Rps24uniprot
Rps19uniprot
Rps20uniprot
Rps21uniprot
Rps23uniprot
Rps25uniprot
Rps27uniprot
Rps27auniprot
Rps6ka1uniprot
Rps6ka2uniprot
Rps6ka3uniprot
Rps6kb2uniprot
L14e
Large (60S) Subunit
Small (40S) Subunit

GPML Annotator: Mm_RNA_transcription_Reactome.gpml

Tbpuniprot
Gtf2buniprot
Taf5uniprot
Taf6uniprot
Taf7uniprot
Taf9uniprot
Ilkuniprot
Taf12uniprot
Taf13uniprot
Gtf2e1uniprot
Gtf2a2uniprot
Gtf2f2uniprot
Gtf2e2uniprot
Cdk7uniprot
Gtf2h1uniprot
Gtf2h2uniprot
Gtf2h3uniprot
Gtf2h4uniprot
Ercc3uniprot
Ercc2uniprot
Rpo1-2uniprot
Polr2auniprot
Polr2funiprot
Polr2cuniprot
Polr2euniprot
Polr2kuniprot
Polr3duniprot
Polr3euniprot
Polr3kuniprot
Rpo1-4uniprot
Rpo1-1uniprot
Polr2iuniprot
Polr2guniprot
Polr2huniprot
Polr2juniprot
Rpo1-3uniprot
Polr2buniprot
Ccnhuniprot
Mnat1uniprot
Polr3buniprot
Polr3huniprot
TATA
5
3
3
5
5
3
5
3
TATA
5
3
5
3
dsDNA
5
3
5
3
5
3
5
Primary RNA transcript
RNA polymerase IIenzyme
(mRNA, snRNPs)
RNA polymerase Ienzyme
(large ribosomal RNAs)
RNA polymerase IIIenzyme
(small stable RNAs)
cell growth
Gene Regulatory Proteins
(recognize surface DNA geometry)
TFIIDuniprot
TFIIBuniprot
Transcription Initiation Factors (TIFs)
TFIIE
TFIIA
TFIIF
TFIIDuniprot
TFIIBuniprot
TFIIH
TFIIF
TATA
TFIIF
RNA pol II
TFIIH
TFIIE
TATA Box binding
proteinCHEBI:16541
Steps 1) TBP binds TATA box
Steps 2) Association of TIFs and RNA polymerase
Steps 3) DNA melting by association with TFIIH
Steps 4) Transcription elongation by NTPs
Steps 5) RNA elongation with CDT phosphorylation
TFIIA

GPML Annotator: Mm_S1P_Signaling.gpml

Edg5uniprot
Edg3uniprot
Edg8uniprot
Edg1uniprot
Plcb3uniprot
Akt1uniprot
Akt2uniprot
Akt3uniprot
Pik3c2guniprot
Gnai1uniprot
Gnai2uniprot
Gnai3uniprot
Racgap1uniprot
Mapk3uniprot
Mapk1uniprot
Mapk6uniprot
Mapk7uniprot
Mapk12uniprot
Smpd2uniprot
Asah2uniprot
Sphk2uniprot
Sphk1
GPCRs similar to S1P

GPML Annotator: Mm_Selenoprotein.gpml

Sephs1uniprot
Sephs2uniprot
Sp1uniprot
Sp3uniprot
Pou2f1uniprot
Cremuniprot
SBP2uniprot
eEFSecchemical
Sarsuniprot
Sars2uniprot
Pstkuniprot
UGA
Rpl30uniprot
eEFSecchemical
SBP2uniprot
GPX1uniprot
GPX2uniprot
GPX4uniprot
DIO1uniprot
SEPP1uniprot
TXNRD1uniprot
SepW1
Sephs2uniprot
Sep15uniprot
DIO2uniprot
DIO3uniprot
GPX3uniprot
SelH
SelI
SelK
SelM
SEPN1uniprot
SelO
SepX1
SelS
SelT
TXNRD2uniprot
TXNRD3
SelV
Secp43chemical
Slauniprot
TXNRD1uniprot
TXNRD3
TXNRD2uniprot
Selenbp1uniprot
Fabp1uniprot
Selenbp1uniprot
SBP2uniprot
Scly
GPX6uniprot
Cystathionine g-lyase
Nfe2l2uniprot
Jununiprot
Fosuniprot
p105uniprot
p65uniprot
MethylSelenol MeSeH
H2SeCHEBI:16503
Selenophosphate hmdbid:HMDB06407
Phosphoseryl-tRNA[ser](sec)chemical
Seryl-tRNA[ser](sec)chemical
Sec tRNA[ser]secchemical
Selenocysteyl-tRNA sec
ORGANIC Se
Diet
INORGANIC Se
SeleniteCHEBI:18212
methyl transferase
demethylationchemical
coding region
AUG
STOP
Transcription Factors
nucleusCHEBI:33252
AntioxidantCHEBI:22586
Redox
Thyroid hormone
enzymes
signalling
metabolism
Sec
synthesis
Se transport
and storage
Protein folding
Unkown
function
Selenoproteins
SeMet
Se = Selenium, SeMet = SelenoMethionine,
SeC
SelenateCHEBI:15075
SeMet
SeC
SeleniteCHEBI:18212
SelenateCHEBI:15075
GSH hmdbid:HMDB00125
Body proteins
TrX
SeC Biosynthesis
Selenium binding proteins
SeC
SeC
SeC = Selenocysteine, H2Se = Selenide,
GSH = Gluthatione, Trx = Thioredoxin

GPML Annotator: Mm_Signaling_of_Hepatocyte_Growth_Factor_Receptor_Biocarta.gpml

Itgb1uniprot
Itga1uniprot
Ptk2buniprot
Pxnuniprot
Ptk2uniprot
Srcuniprot
Ptenuniprot
Pxnuniprot
Ptk2uniprot
Srcuniprot
Ptk2buniprot
Rasa1uniprot
Pik3cauniprot
Gab1uniprot
Ptpn11uniprot
Grb2uniprot
Stat3uniprot
Sos2uniprot
Crkluniprot
Crkuniprot
Dock1uniprot
Rapgef1chemical
Rap1auniprot
Rap1buniprot
Rasuniprot
Mapk8uniprot
Map4k1uniprot
Elk1uniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
Mapk1uniprot
Mapk3uniprot
Jununiprot
Fosuniprot
Pak1uniprot
Met
Hgfuniprot
P
P
P
Trancription
Transcription
AP-1uniprot
Transcription
of Cox2
Anoikis
AKT Pathway
Actinuniprot
RHOuniprot
Pathway
RAC1uniprot
Pathway
CDC42uniprot
Pathway
Changes in Cytoskeleton
and Cell mobility
Extracellular
Cytoplasm
Right Click for Comments

GPML Annotator: Mm_Small_ligand_GPCRs.gpml

Cnr1uniprot
Cnr2uniprot
Edg1uniprot
Edg2uniprot
Edg3uniprot
Edg6uniprot
Mtnr1auniprot
Mtnr1buniprot
Ptafruniprot
Ptgdruniprot
Ptger1uniprot
Ptger2uniprot
Ptger3uniprot
Ptger4uniprot
Ptgfruniprot
Ptgiruniprot
Tbxa2runiprot
Edg4uniprot
Edg5uniprot
ProstanoidsCHEBI:26347
Melatonin hmdbid:HMDB01389
Platelet Activating
Lysophosphatidicchemical
AcidCHEBI:37527
Cannabinoidchemical
Gq/G11 Pathway
Gq/G11 Pathway
Gi Pathway

GPML Annotator: Mm_Smooth_muscle_contraction.gpml

Prkar1buniprot
Prkcauniprot
Prkcb1uniprot
Prkccuniprot
Prkcduniprot
Prkciuniprot
Prkchuniprot
Prkcmuniprot
Prkcquniprot
Prkczuniprot
Prkceuniprot
Prkacbuniprot
Prkar2auniprot
Prkar2buniprot
Prkacauniprot
Prkar1auniprot
Rgs1uniprot
Rgs3uniprot
Rgs4uniprot
Rgs5uniprot
Rgs6uniprot
Rgs7uniprot
Rgs9uniprot
Rgs10uniprot
Rgs11uniprot
Rgs14uniprot
Rgs16uniprot
Rgs17uniprot
Rgs18uniprot
Rgs19uniprot
Rgs20uniprot
Rgs2uniprot
Gabpb1uniprot
Sp1uniprot
Nfkb1uniprot
Ets2uniprot
Igfbp1uniprot
Igfbp2uniprot
Igfbp4uniprot
Admuniprot
Oxtruniprot
Igfbp6uniprot
Lgr7
Nos1uniprot
Crhuniprot
Igfbp3uniprot
Crhr1uniprot
Rln1uniprot
Nos3uniprot
Fosuniprot
Oxtuniprot
Ywhazuniprot
Ywhaeuniprot
Ywhahuniprot
Ywhaguniprot
Sfnuniprot
Ywhaquniprot
Gja1uniprot
Il1buniprot
Il6uniprot
Gnaquniprot
Cmkor1uniprot
Admruniprot
Oxtruniprot
Jununiprot
Pde4buniprot
Pde4duniprot
Camk2duniprot
Ywhabuniprot
Calm1uniprot
Camk2buniprot
Gabpauniprot
Camk2auniprot
Maffuniprot
Lgr8uniprot
Igfbp5uniprot
Cnn1uniprot
Plcb3uniprot
Cnn2uniprot
Myl4uniprot
Myl2uniprot
Guca2auniprot
Guca2buniprot
Gucy2euniprot
Gucy1a3uniprot
Gprk5uniprot
Gprk6uniprot
Gnb1uniprot
Gnb2uniprot
Gnb3uniprot
Gnb4uniprot
Gnb5uniprot
Gngt1uniprot
Gng2uniprot
Gng3uniprot
Gng4uniprot
Gng7uniprot
Gng8uniprot
Gng12uniprot
Gng13uniprot
Gng5uniprot
Gng11uniprot
Atf2uniprot
Atf3uniprot
Creb3uniprot
Atf5uniprot
Atf4uniprot
Atf1uniprot
Creb1uniprot
Gprk2luniprot
Gnasuniprot
Calm2uniprot
Pkiauniprot
Pkibuniprot
Pkiguniprot
Calcauniprot
Crcpuniprot
Calm3uniprot
Crebl1uniprot
Itpr2uniprot
Itpr3uniprot
Dgkzuniprot
Plcd1uniprot
Plcg1uniprot
Plcg2uniprot
Plcb3uniprot
Gsto1uniprot
Ryr3
Atp2a2uniprot
Arrb1uniprot
Arrb2uniprot
Cacnb3uniprot
Slc8a1uniprot
Cald1uniprot
Acta1uniprot
Acta2uniprot
Actbuniprot
Actc1uniprot
Actg1uniprot
Ramp1uniprot
Ramp2uniprot
Ramp3uniprot
Camk2guniprot
Mylk2uniprot
Ryr1
Atp2a3uniprot
Ryr2
Myl1uniprot
Myl3uniprot
Myl9uniprot
Nppauniprot
Cremuniprot
Gnai2uniprot
Itpr1uniprot
Adcy4uniprot
Adcy3uniprot
Adcy2uniprot
Adcy1uniprot
Adcy5uniprot
Adcy6uniprot
Adcy7uniprot
Adcy8uniprot
Adcy9uniprot
Protein Kinase Auniprot
Protein Kinase Cuniprot
TR
TR = Transcriptional Regulation
note: see gene backpages for references
Regulators of G-protein
Signaling
IGFBP
Adenylyl Cyclases
Activation Via CRH and cAMP
PKC inhibitor Protein-1
Pathways of Myometrial Relaxation
Pathways of Myometrial Contraction
cAMP hmdbid:HMDB00058
cGMP hmdbid:HMDB01314
Predicted OT-R
Predicted Cxn43
Ets complex
Pge2chemical
NucleusCHEBI:33252
AP-1 complex
Myometrial Relaxation
Adenylyl Cyclasesenzymeuniprot
PKAenzyme
Myometrial Contraction
PKCenzymeuniprot
PKC inhibitor 1
RGS hmdbid:HMDB00131uniprot
G
bg
bg
DAGuniprot
G
Calcium Mobilization
IGFBP
TR
NO
Transcriptional
CRE-Transcription Factors
bg
G
IP3
Pip2chemical
GRK
GRK
Cell Growth
GPCR Kinaseenzyme
PKA Inhibitors
Regulators
Phospholipase-Cchemical
Camk2
IP3 Receptor
SR
IP3 Receptor
Calmodulinuniprot
Phospholipase-Cchemical
CAM-Kinase 2
beta Arrestin
beta Arrestin
beta Arrestin
Calcium Influx
+
Ca
2+
Ca
2+
Na
MAPKenzymeuniprot
2+
Mg
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
Mlck
P
-
ATP hmdbid:HMDB00538
Pi + ADP
RAMPuniprot
RAMPuniprot
Ca++/Calmodulin
Ryr
Ryanodinechemical
Receptor (Ryr)
Myosin Light
Myosin Light Chain
Chain

GPML Annotator: Mm_Statin_Pathway_PharmGKB.gpml

Hmgcruniprot
Cyp7a1uniprot
Soat1uniprot
Mttpuniprot
Dgat1uniprot
Ldlruniprot
Lrp1uniprot
Lpluniprot
Lipcuniprot
Cetpchemical
Lcatuniprot
Abca1uniprot
Pltpuniprot
Apoa1uniprot
Apoa4uniprot
Apoc1uniprot
Apoeuniprot
Apoc2uniprot
Apoc3uniprot
Scarb1uniprot
Cell Membrane
Statin hmdbid:HMDB05007
acetylCoA hmdbid:HMDB01206uniprot
Cholesterol hmdbid:HMDB00067
Cholic Acid hmdbid:HMDB00619
Free FA
Cholesterol Ester
PhospholipidCHEBI:16247
Triglycerideschemical
Liver cell
LDL
IDL
VLDL
HDL
Cholesterol hmdbid:HMDB00067
Tissues
Plasma

GPML Annotator: Mm_Steroid_Biosynthesis.gpml


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Warning: simplexml_load_string() [function.simplexml-load-string]: ids="10545">beta</z:chebi>-OH-delta-<z:chebi ids="35341">steroid</z:chebi> DH & in /Applications/xampp/xamppfiles/htdocs/gpml_annotation/entity_annotation.php on line 68

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Cyp17a1uniprot
Cyp17a1uniprot
Hsd3b6uniprot
F13buniprot
Hsd3b1uniprot
Hsd3b2uniprot
Hsd3b3uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd17b1uniprot
Hsd17b2uniprot
Hsd17b3uniprot
Hsd17b4uniprot
Hsd17b7uniprot
Hsd3b4uniprot
Hsd3b1uniprot
Hsd3b2uniprot
Hsd3b3uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd3b4uniprot
Hsd3b1uniprot
Hsd3b2uniprot
Hsd3b3uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd3b4uniprot
Hsd3b1uniprot
Hsd3b2uniprot
Hsd3b3uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd3b4uniprot
Hydroxyprogesterone aldolase
Steroid-19-Hydroxylasechemical
Steroid-19-Hydroxylasechemical
Hydroxyprogesterone aldolase
Cholesterol hmdbid:HMDB00067
Pregnenolone hmdbid:HMDB00253
Progesterone hmdbid:HMDB01830
17-alpha-OH-Pregnenolonechemical
17-alpha-OH-Progesteronechemical
DHA hmdbid:HMDB00077
Androstenedione hmdbid:HMDB00053
Androstenediol hmdbid:HMDB03818
Testosterone hmdbid:HMDB02998
Estrone hmdbid:HMDB01425
Estradiol hmdbid:HMDB00151
** Estradiol-17-beta DH = DHB
To Mineralcorticoid Synthesis
To Glucocorticoid Synthesis
*
*
*
**
Dihydrotestosterone hmdbid:HMDB02961
*
* 3-beta-OH-delta-steroid DH & Steroid isomerase =

GPML Annotator: Mm_Striated_muscle_contraction.gpml

Myl4uniprot
Myl2uniprot
Myh6uniprot
Myh8uniprot
Acta1uniprot
Actc1uniprot
Tnni1uniprot
Tnnt2uniprot
Tpm3uniprot
Dmduniprot
Vimuniprot
Tpm2uniprot
Tnni2uniprot
Tnni3uniprot
Tnnt3uniprot
Tnnt1uniprot
Tnnc1uniprot
Tnnc2uniprot
Myl3uniprot
Myl1uniprot
Myh3uniprot
Actn3uniprot
Actn2uniprot
Actn4uniprot
Tmod1uniprot
Neb
Myom1uniprot
Tcapuniprot
Ttn
Des
Tpm4uniprot
Tpm1uniprot
Mybpc3uniprot
Mybpc2uniprot
Mybpc1uniprot
Acta2uniprot
Actg1uniprot
Myl9uniprot
Myom2
Myh7uniprot
Myh4uniprot
Myh1uniprot
Casq2uniprot
2300003C06Rik
Smpxuniprot
Myosin Light Chain
Myosin Heavy Chainuniprot
Tropomyosinuniprot
Other Structural
M Disk
Z Disk
Z Disk
Myosin Binding
A Model of Triggering of Striated Muscle
Contraction by Ca++
Troponin-Tuniprot
Troponin-Iuniprot
Troponin-Cuniprot
Actinuniprot
Actinuniprot
Myosin Binding Site
(Covered)
Ca
Ca
Myosin Head
Regulatory Proteins

GPML Annotator: Mm_Synthesis_and_Degradation_of_Ketone_Bodies_KEGG.gpml

Bdhuniprot
Acat1uniprot
Hmgcluniprot
Hmgcs2uniprot
3-Hydroxy-butyratechemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Acetoacetyl-CoA hmdbid:HMDB01484
3-Hydroxy-3-methylglutaryl-CoA hmdbid:HMDB01375
Acetyl-CoA hmdbid:HMDB01206uniprot
Pyruvate metabolism
Fatty acid metabolism
Sterol biosynthesis
Acetoacetate hmdbid:HMDB00060
Fatty acid beta-oxidation
Glycolysis
(HMG-CoA cycle)
* pathway-regulated enzymes: HMG-CoA synthase, mt

GPML Annotator: Mm_T-Cell-Receptor_NetPath_11.gpml

TRA@
TRB@
Cd3guniprot
Cd3duniprot
Cd3euniprot
Cd5uniprot
Ptpn6uniprot
Nck1
Slauniprot
Sykuniprot
Cbluniprot
PIK3R1uniprot
Pik3r2uniprot
Trat1uniprot
Lax1uniprot
Gab2uniprot
Shc1uniprot
Prkcquniprot
Vav1uniprot
Fybuniprot
Dusp3uniprot
Ptpn3
Ptpn12uniprot
Map2k1uniprot
Mapk1uniprot
Prkd2uniprot
Sit1uniprot
Ptpn11uniprot
MAP3K1uniprot
LOC545902
Map2k2uniprot
Mapk3uniprot
Vav3uniprot
Vav2uniprot
Stat1uniprot
Stat5auniprot
Mapk7uniprot
Jak3uniprot
Sh2d3cuniprot
Bcl10uniprot
Pak1uniprot
Scap1
Scap2
Sos2uniprot
Dbnluniprot
Abl1uniprot
Rasa1uniprot
Ptpn22uniprot
Crkluniprot
Ctnnb1uniprot
Cblbuniprot
Shbuniprot
Srcuniprot
Ptk2uniprot
Akt1uniprot
Cd4uniprot
Cd8auniprot
Sh3bp2uniprot
Stat5buniprot
Cd2uniprot
Rap1auniprot
Lyn
Rac2uniprot
Cd247uniprot
Cd247uniprot
Fynuniprot
Zap70uniprot
Lckuniprot
Map4k1uniprot
Muc1uniprot
Tubb5uniprot
Fcrl5
SLA2uniprot
Card11
Waspipuniprot
Nfam1uniprot
Def6chemical
Was
Grapuniprot
Grap2uniprot
Lcp2uniprot
Arhgdibuniprot
Crkuniprot
Dtx1uniprot
Nedd9uniprot
Rapgef1chemical
Pstpip1uniprot
Latuniprot
Grb2uniprot
Sos1uniprot
Plcg1uniprot
Pxnuniprot
Arhgef7uniprot
Txkuniprot
Khdrbs1uniprot
NCLuniprot
Unc119uniprot
Tuba4uniprot
Itkuniprot
Dnm2uniprot
Dlgh1uniprot
Creb1uniprot
Crebbpuniprot
Arhgef6uniprot
Git2uniprot
Vaspuniprot
ENAHuniprot
Evluniprot
Cdc42uniprot
Fybuniprot
Lcp2uniprot
Nck1
Ptprcuniprot
Sh2d2auniprot
WASF2uniprot
ABI1uniprot
Pag1uniprot
Rasgrp2
Cd2apuniprot
Homer3uniprot
Cebpbuniprot
Ppp3cbuniprot
Cabin1uniprot
Nfatc2uniprot
Itpr1uniprot
Ywhaquniprot
Jununiprot
Jununiprot
Fosuniprot
Cishuniprot
Dock2uniprot
Ripk2uniprot
Lime1uniprot
Acp1uniprot
Lnkuniprot
Stk39uniprot
Hdac7auniprot
Stat5auniprot
Stat5buniprot
Lime1uniprot
Hdac7auniprot
BRAFuniprot
Ptk2buniprot
Ptprjuniprot
Cd3euniprot
Antigen
Molecular association
Methylationchemical
Glycosylation
Autophosphorylationchemical
Demethylationchemical
Translocation
Cytoplasm
Endoplasmic reticulum
Endosome
Palmitoylationchemical
Phosphorylationchemical
CY->NU
CY->NU
CY->PM
NU->CY
D
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
Accession Number: NetPath_11
ER
CY
EN
Acetylationchemical
Deacetylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
EC
Extracellular
Golgi apparatus
GO
Mitochondrion
MT
NucleusCHEBI:33252
NU
Plasma membrane
PM

GPML Annotator: Mm_TGF-beta-Receptor_NetPath_7.gpml

Tgfb1uniprot
Tgfbr1uniprot
Tgfbr2uniprot
Smad2uniprot
Dab2uniprot
Smad7uniprot
Smurf1uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfb2uniprot
Arrb2uniprot
Tgfb3uniprot
Tgfbr1uniprot
Tgfbr2uniprot
Smad3uniprot
Strap
Smad6uniprot
Tgfbr2uniprot
Tgfbr3uniprot
Tgfb1uniprot
Sparc
Sdc2uniprot
Cd44uniprot
Ap2b1uniprot
Smad4uniprot
Zfyve9
Daxxuniprot
Fkbp1auniprot
Fntauniprot
Erbb2ipuniprot
Gipc1uniprot
PIK3R1uniprot
Ctnnb1uniprot
Enguniprot
Cav1uniprot
Eif3s2uniprot
Axin1uniprot
Snx6uniprot
Vdruniprot
Prkar2auniprot
Prkar1buniprot
Zfhx1auniprot
Tgifuniprot
Nup214uniprot
Pik3r2uniprot
Pard3uniprot
Hgsuniprot
Tgfbr1uniprot
Tgfbr2uniprot
Tgfbr2uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfbr1uniprot
Tgfb1uniprot
Tgfb3uniprot
Tgfb2uniprot
Tgfb2uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfb1uniprot
Tgfbr2uniprot
Tgfbr3uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfb3uniprot
Tgfb3uniprot
Lef1uniprot
Hdac1uniprot
Mef2cuniprot
Mef2auniprot
Runx2uniprot
Mycuniprot
Sp1uniprot
Nup153uniprot
Smad2uniprot
Nfycuniprot
Snip1uniprot
Zfhx1buniprot
Foxh1uniprot
Pcafchemical
Ep300
Cdc27uniprot
Skiluniprot
Esr1uniprot
Smad4uniprot
Smad3uniprot
Rbx1uniprot
Cul1uniprot
Dvl1uniprot
Foxo3a
Trp53uniprot
Trp73
SNW1uniprot
Cri2
Stambpl1uniprot
Foxo1uniprot
Atf2uniprot
Cited1uniprot
Jund1uniprot
Fosuniprot
Rbl1uniprot
Anapc10uniprot
Anapc1uniprot
Anapc4uniprot
Cdc27uniprot
Cdc16uniprot
Cdc23uniprot
Anapc2uniprot
Anapc5uniprot
Anapc7uniprot
E2f5uniprot
Hnf4auniprot
E2f4
Anapc1uniprot
Anapc2uniprot
Anapc5uniprot
Anapc7uniprot
Cdc27uniprot
Cdc16uniprot
Cdc23uniprot
Anapc4uniprot
Jununiprot
Smad3uniprot
Ski
Ar
Ctcfuniprot
Atf3uniprot
Esr1uniprot
Ets1uniprot
Axin2uniprot
Mllt7uniprot
Junbuniprot
Fosbuniprot
Trap1uniprot
Stk11ip
Stk11uniprot
Sumo1uniprot
Hoxa9uniprot
Dcp1auniprot
Cops5uniprot
Mapk14uniprot
Map3k7uniprot
Smad7uniprot
Smurf1uniprot
Yap1uniprot
Map2k6uniprot
Map2k3uniprot
Smurf2
Smad7uniprot
Smurf2
Strap
Snx6uniprot
Snx1uniprot
Snx2uniprot
Snx4uniprot
CDK2uniprot
Ccne1uniprot
Tfdp1uniprot
Smad3uniprot
Tfdp2uniprot
Cdkn1auniprot
Nfyauniprot
Nfybuniprot
Foxg1uniprot
Crebbpuniprot
Ncoa1uniprot
Fzr1uniprot
Rbl2uniprot
Ppp2r2auniprot
Anapc10uniprot
Rock1uniprot
Cdc25auniprot
Map3k7ip1uniprot
Xpo1uniprot
Hspa8uniprot
Rock1uniprot
Rbl2uniprot
E2f4
E2f4
E2f4
Rbl1uniprot
Kpnb1uniprot
Smad3uniprot
Kpnb1uniprot
Smad3uniprot
Tfdp2uniprot
Tfdp2uniprot
Smad4uniprot
Smad4uniprot
Dcp1auniprot
Smad2uniprot
Smad2uniprot
Rb1uniprot
Rb1uniprot
Mapk8uniprot
Cdk6uniprot
Cdk4uniprot
Ccnd1uniprot
Prkcduniprot
PRKCGuniprot
Prkcb1uniprot
Rb1uniprot
Pias1uniprot
Pias2uniprot
Ube2d2uniprot
Ube2d1uniprot
Ube2d3uniprot
Skp1auniprot
Btrcchemical
Rbx1uniprot
Cul1uniprot
Camk2auniprot
Camk2duniprot
Camk2guniprot
Camk2buniprot
E2f5uniprot
Skp1auniprot
Cul1uniprot
Rbx1uniprot
Btrcchemical
Smad3uniprot
Rbl1uniprot
Smad4uniprot
Smad3uniprot
E2f4
E2f5uniprot
Tfdp1uniprot
Rbl1uniprot
Smad4uniprot
E2f4
Tfdp1uniprot
Smad3uniprot
E2f5uniprot
E2f5uniprot
E2f5uniprot
Rbl1uniprot
Cdc2auniprot
Ccnb2uniprot
Mapk14uniprot
Mapk8uniprot
Gene Symbol
Acvrl1uniprot
NU -> CY
NU -> CY
NU
CY
CY
NU
CY
NU
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
CY
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
NU
NU
CY
NU
CY
CY
NU
NU
CY
NU
CY
CY
NU
CY
NU
NU
CY
NU
CY
NU
CY
NU
CY
CY
NU
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
Translocation
CY
Cytoplasm
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondria
NU
NucleusCHEBI:33252
PM
Plasma membrane
Accession Number: NetPath_7; cellmap:7

GPML Annotator: Mm_TGF_Beta_Signaling_Pathway.gpml

Tgfbr3uniprot
Enguniprot
Tgfbr2uniprot
Tgfbr1uniprot
Inhbauniprot
Bmp4uniprot
Ltbp1uniprot
Fstuniprot
Noguniprot
Itgb6uniprot
Thbs1uniprot
Tgfbr2uniprot
Tgfbr1uniprot
Fkbp1auniprot
Sara1uniprot
Spp1uniprot
Zfhx1buniprot
Smad1uniprot
Smad5uniprot
Smad9uniprot
Smad2uniprot
Smad3uniprot
Smad6uniprot
Smad7uniprot
Ifnguniprot
Tgfb1uniprot
Bmp4uniprot
Tnfuniprot
Egfuniprot
Stat1uniprot
Smad2uniprot
Smad1uniprot
Nfkb1uniprot
Mapk3uniprot
Hras1uniprot
Smad4uniprot
Wnt11uniprot
Lifuniprot
Tnfuniprot
Catnbuniprot
Jak1uniprot
Mapk9uniprot
Runx2uniprot
Runx3uniprot
Lef1uniprot
Stat3uniprot
Jununiprot
Tcfe3uniprot
Crebbpuniprot
Tgifuniprot
Skiluniprot
Ski
Serpine1uniprot
Fosuniprot
Bambiuniprot
Tgfb1uniprot
P300uniprot
QAZ
Foxh1uniprot
ligands:
Co-smads
Repressors
CofactorsCHEBI:23357
Rsmads
R-Smads
CofactorCHEBI:23357
Accessory receptors
TGFb
Co-Smads

GPML Annotator: Mm_TNF-alpha-NF-kB_NetPath_9.gpml

Traf6uniprot
FLNAuniprot
Psmc3uniprot
Reluniprot
Nfkb1uniprot
Cylduniprot
Ikbkguniprot
Tbk1uniprot
Ddx48uniprot
Psmd6uniprot
Traipuniprot
Trpc4apuniprot
2810055G22Rik
Tnfrsf8uniprot
Casp8ap2uniprot
Hspb1uniprot
Tnfrsf1buniprot
Tnfrsf1buniprot
Tnfrsf1auniprot
Tnfrsf1auniprot
Tnfuniprot
Tnfuniprot
Tnfuniprot
Tnfuniprot
Tnfuniprot
Prkczuniprot
Relauniprot
Prkacauniprot
Ppp2cauniprot
Ube2d3uniprot
LOC382523
Ube2d2uniprot
Casp7uniprot
Map3k2uniprot
Capn3uniprot
Cdc34uniprot
Nfkbiauniprot
Traf2uniprot
Traddchemical
Psmd7uniprot
Psmd3uniprot
Psmd12uniprot
Nfkb2uniprot
Psmd13uniprot
T2bp
Psmd1uniprot
RPL30uniprot
Relbuniprot
Smarcc1uniprot
Cdc37uniprot
RPL6uniprot
Smarca4
Hdac1uniprot
Hdac2uniprot
Kcnq1uniprot
Kpna3uniprot
Psmb5uniprot
Faf1uniprot
Psmc1uniprot
Stat1uniprot
Fadduniprot
Psmc2uniprot
Papolauniprot
Bcl3uniprot
Pmluniprot
IQGAP2uniprot
Ddx3xuniprot
Glg1uniprot
Usp11uniprot
BCL7Auniprot
Gsk3buniprot
Smarcb1uniprot
Traf1uniprot
Tbk1uniprot
Smarce1uniprot
Cops3uniprot
Hdac6uniprot
Smarcc2uniprot
Unc5clchemical
Pkn1uniprot
KPNA2uniprot
Kpna6uniprot
4921526G09Rik
Pias3uniprot
Peg3uniprot
Cav1uniprot
Gtf2iuniprot
Txlnauniprot
Map3k3uniprot
Ywhaguniprot
Gab1uniprot
Pfdn2uniprot
Ywhabuniprot
Ywhaeuniprot
Ywhahuniprot
Ywhaquniprot
Ywhazuniprot
Tnfaip3uniprot
Tnip1uniprot
Tnip2
Akt2uniprot
Chukuniprot
Akt1uniprot
Srcuniprot
Rnf25uniprot
Nfkb1uniprot
Relauniprot
Fbxw11
Csnk2a1uniprot
Csnk2a2uniprot
Csnk2buniprot
Ripk1uniprot
CASP10uniprot
Casp8uniprot
Traf3uniprot
Birc2uniprot
Birc3uniprot
Ptk2uniprot
Cflaruniprot
Casp3uniprot
Nfkbiauniprot
Cul1uniprot
Skp1auniprot
Btrcchemical
E430034L04Rik
Relauniprot
Cd3eapuniprot
Nfkbibuniprot
Lrpprc
MCC
Mtif2uniprot
Nkiras1uniprot
Nkiras2uniprot
Pdcd2uniprot
Rpo1-4uniprot
Rpo1-2uniprot
Rpo1-3uniprot
Polr2huniprot
Polr2luniprot
Ikbkbuniprot
2610301G19Rik
Ikbkguniprot
Chukuniprot
RASAL2uniprot
Polr1euniprot
Rpo1-1uniprot
Nfkbieuniprot
Nfkbiauniprot
Commd1uniprot
Mcm5uniprot
Mcm7uniprot
Sumo1uniprot
Ikbkapchemical
Hsp90ab1uniprot
Za20d2uniprot
Crebbpuniprot
Fkbp5uniprot
Hsp90aa1uniprot
Ptpn11uniprot
Map3k14uniprot
Fbluniprot
Rpl4uniprot
Ktn1uniprot
Rpl8uniprot
Rps11uniprot
RPS13uniprot
LOC622602
Azi2
Ikbkeuniprot
Tank
MAP3K1uniprot
Wdr68uniprot
Ube2iuniprot
Map3k8uniprot
Map3k3uniprot
Map2k5uniprot
Mark2uniprot
Rps6ka5uniprot
Nfkbiz
Usp2uniprot
Nsmafuniprot
Gnb2l1uniprot
Nalp4e
Cradduniprot
Casp2uniprot
Tnfrsf11auniprot
Akap8uniprot
Actl6auniprot
Ppp1r13luniprot
Dpf2uniprot
Ripk3uniprot
Ripk2uniprot
Pebp1uniprot
Nr2c2uniprot
Nr2c2uniprot
Map3k7ip1uniprot
Map3k7ip2uniprot
Akp2uniprot
Tnfrsf1auniprot
Tnfuniprot
Dapuniprot
Fancd2uniprot
Birc2uniprot
Traf2uniprot
Ripk1uniprot
Traddchemical
Tnfrsf1buniprot
Birc3uniprot
Traf1uniprot
Traf2uniprot
Bag4uniprot
RPS6KB1uniprot
Traf4uniprot
Relbuniprot
Relauniprot
Reluniprot
Traf4uniprot
Nfkb1uniprot
Gene Symbol
Gene
Gene
Gene
Gene
NU
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
CY
EC
EN
ER
GO
MT
PM
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Ubiquitination
Inhibitionchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Activationchemical
Recruitment
Control
Translocation
Cytoplasm
Extracellular
Endosome
Endoplasmic reticulum
Golgi apparatus
CY ->NU
CY ->NU
CY ->NU
CY ->NU
CY ->NU
Receptor
Ligand
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
D
Autophosphorylationchemical
Mitochondrion
NucleusCHEBI:33252
Plasma membrane
Accession Number: NetPath_9; cellmap:9
Molecule in the pathway

GPML Annotator: Mm_Translation_Factors.gpml

Eif3s8uniprot
Eif3s9uniprot
Sui1-rs1uniprot
Eif2s1uniprot
Eif2s3yuniprot
Eif2s3xuniprot
Eif3s1uniprot
Eif3s2uniprot
Eif3s3uniprot
Eif3s4uniprot
Eif3s5uniprot
Eif3s6uniprot
Eif3s7uniprot
Eif3s10uniprot
Pabpc1uniprot
Eif4ebp1uniprot
Eif4ebp2uniprot
Eif4ebp3uniprot
Paip1uniprot
Eif2s2uniprot
Etf1uniprot
eRF3
Eef1a2uniprot
Eef1b2uniprot
Eef1guniprot
Eef1duniprot
Eef1a1uniprot
Eef2kuniprot
Pabpc2chemical
Eif2b1uniprot
Eif2b2uniprot
Eif2b3uniprot
Eif2b4uniprot
Eif2b5uniprot
Itgb4bpuniprot
Eif5auniprot
Eif5uniprot
Eif4g1uniprot
Eif4g2uniprot
Eif4euniprot
Eif4a1uniprot
Eif4a2uniprot
Eif4buniprot
Eif1auniprot
Prkruniprot
Eif2ak1uniprot
Wbscr1uniprot
Eef2uniprot
Eif2ak3uniprot
IF2uniprot
Eif4g3uniprot
AAAAAAAAAAAAAAA
m7G
AUG
mRNACHEBI:33699
Guanine Nucleotide Exchange
Recruitment of 43S
scanning
Cap Binding Complex
43S Pre-initiation Complex
Recruitment of 60S subunit
and first peptide bond
60S Subunit
40S Subunit
Pre-initiation Complex
Translocation
Binds aminoacyl-tRNA
Terminationchemical
Elongation
Initiationchemical

GPML Annotator: Mm_Triacylglyceride_Synthesis_BiGCaT.gpml

Gpd1uniprot
Gykuniprot
Gpamuniprot
Gnpatuniprot
Agpsuniprot
AYR1uniprot
Agpat1uniprot
Agpat2uniprot
Agpat3uniprot
Agpat4uniprot
Agpat5uniprot
Ppap2auniprot
Ppap2buniprot
Ppap2cuniprot
Dgat1uniprot
Gk2
Dgat2uniprot
Mgat1uniprot
Mgat2uniprot
Mgat3uniprot
Lpluniprot
Lipeuniprot
Lipcuniprot
Lipfuniprot
Pnpla2chemical
Dihydroxyacetonephosphate hmdbid:HMDB01473
Glycerol hmdbid:HMDB00131
Glycerol-3-phosphate hmdbid:HMDB00126
Fatty Acyl CoA
See Fatty Acid Synthesis MAPP
Lysophosphatic Acidchemical
Dihydroxyacetone phosphate hmdbid:HMDB01473
Fatty acyl CoA
acyldihydroxyacetonephosphatechemical
See Fatty Acid Synthesis MAPP
Phosphatic acidchemical
Only 1 of these enzymes is needed
DiacylglycerolCHEBI:18035 CHEBI:18035
Only 1 of these enzymes is needed
Triacylglycerolchemical
Fatty Acyl CoA
MonoacylglycerolCHEBI:17408 CHEBI:17408
Degradation
Path

GPML Annotator: Mm_Tryptophane_Metabolism_KEGG.gpml

2.6.1.27
1.4.3.2
Indo
Cyp2j6uniprot
Asmtchemical
Hrmt1l2uniprot
Aanatuniprot
Indo
Mdm2uniprot
Maobuniprot
Ddcuniprot
2.6.1.27
Ddcuniprot
Indo
2.6.1.27
1.13.11.17
1.7.3.2
1.14.16.-
3.5.1.49
3.5.1.9
1.13.11.23
1.14.16.3
Acat1uniprot
Hadh2uniprot
Echs1uniprot
Gcdhuniprot
Ogdhuniprot
1.2.1.32
Acmsduniprot
Haaouniprot
Kynuuniprot
1.14.13.9
Kynuuniprot
Kynuuniprot
Tdo2uniprot
4.1.99.1
Tph1uniprot
Wars
1.13.99.3
Cat
Aadatuniprot
Aadatuniprot
1.10.3.4
Maobuniprot
1.13.11.-
1.5.1.-
Dhcr24
1.13.11.10
1.3.1.18
1.14.99.2
1.13.12.3
Ddcuniprot
Maobuniprot
4.1.1.43
1.2.3.7
Aldh3a2uniprot
2.1.1.47
1.1.1.110
Cyp7b1uniprot
Afmiduniprot
Aldh3a2uniprot
Aox1uniprot
1.2.1.-
4432411E13Rik
Hrmt1l2uniprot
Hrmt1l2uniprot
Maobuniprot
4.2.1.84
3.5.1.4
3.5.5.1
3.2.1.147
1.1.1.190
1.1.1.191
Abp1uniprot
2.1.1.49
Inmtuniprot
3.5.99.5
Cyp1a1uniprot
Cyp1a2uniprot
Cyp2a3auniprot
Cyp2a1uniprot
Cyp2a2uniprot
Cyp2c12uniprot
Cyp2d26uniprot
Cyp2e1uniprot
Cyp19a1uniprot
Cyp1b1uniprot
Cyp3a3
Cyp2c55
Cyp2b19uniprot
Cyp2c38uniprot
Cyp2f2uniprot
Cyp4f14uniprot
Hadhscuniprot
Aldh1a2uniprot
Aldh1a1uniprot
Aldh2uniprot
Aldh1a7uniprot
Aldh9a1uniprot
Aldh1a2uniprot
Aldh1a1uniprot
Aldh1a7uniprot
Aldh2uniprot
Aldh9a1uniprot
4.1.1.-
Mdm2uniprot
Mdm2uniprot
Ube3auniprot
Ube3auniprot
Rnf25uniprot
Rnf25uniprot
Asmtchemical
Gcdhuniprot
Nicotinate and nicotinamide metabolism
PhenylAla, Tyr and Trp biosynthesis
Glycolysis / Gluconeogenesis
Benzoate degradation via hydroxylation
Benzoate degradation via hydroxylation
6-Hydroxykynurenatechemical
4,6-Dihydroxyquinoline hmdbid:HMDB04077
4-(2-Amino-5-hydroxyphenyl)chemical
5-HydroxykynurenamineCHEBI:28715
5-HydroxykynurenineCHEBI:2076
5-Hydroxy-N-formylkynurenineCHEBI:2065
N-AcetylisatinCHEBI:16050
N-AcetylindoxylCHEBI:15363
Indoxyl hmdbid:HMDB04094
2,3-DihydroxyindoleCHEBI:17828
2-Oxoglutarate hmdbid:HMDB00208
Oxaloacetate hmdbid:HMDB00223
5-(2’-Carboxyethyl)-4,6-dihydroxypicolinatechemical
5-(2’-Formylethyl)-4,6-dihydroxypicolinatechemical
5-(3’-Carboxy-3’-oxopropyl)chemical
5-(3’-Carboxy-3’-oxopropenyl)-4,6-dihydroxypicolinchemical
7,8-DihydroxykynurenateCHEBI:17508
7,8-Dihydro-7,8-dihydroxykynurenateCHEBI:17109
Acetyl-CoA hmdbid:HMDB01206uniprot
Kynurenate hmdbid:HMDB00715
4-(2-Aminophenyl)-2,4-dioxobutanoate hmdbid:HMDB00978
L-Kynurenine hmdbid:HMDB00183
Formylkynurenine hmdbid:HMDB01200
Indole hmdbid:HMDB00738
2-FormylaminobenzaldehydeCHEBI:18033
3-IndoleglycolaldehydeCHEBI:15976
Indole-3-acetamideCHEBI:16031
5-HydroxyindolepyruvateCHEBI:27597
5-Hydroxychemical
L-Tryptophan hmdbid:HMDB00929
C00332
C01144
C00877
C00527
2-Oxoadipate hmdbid:HMDB00225
2-Aminomuconate hmdbid:HMDB01241
2-Aminomuconate hmdbid:HMDB01241
Quinolinate hmdbid:HMDB00232
2-Amino-3-carboxymuconatechemical
3-Hydroxyanthranilate hmdbid:HMDB01476
Xanthurenicchemical
4-(2-Amino-3-hydroxyphenyl)chemical
4,8-DihydroxyquinolineCHEBI:28883
3-HydroxykynurenamineCHEBI:27421
3-Hydroxy-chemical
IsophenoxazineCHEBI:17293
2-AminophenolCHEBI:18112
Cinnavalininatechemical
L-Tryptophanyl-tRNAchemical
3-(2-Aminoethyl)chemical
5-Hydroxyindoleacetaldehyde hmdbid:HMDB04073
5-Hydroxyindoleacetate hmdbid:HMDB00763
5-Methoxytryptamine hmdbid:HMDB04095
Formyl-5-hydroxykynurenamineCHEBI:28736
N-Acetylserotonin hmdbid:HMDB01238
Melatonin hmdbid:HMDB01389
6-Hydroxymelatonin hmdbid:HMDB04081
Formyl-N-acetyl-5-chemical
IndolepyruvateCHEBI:17640
Indolelactate hmdbid:HMDB00671
3-MethylindolepyruvateCHEBI:28549
6-HydroxyindolelactateCHEBI:27524
Indole-3-acetate hmdbid:HMDB00197
Indole-3-acetaldehyde hmdbid:HMDB01190
Tryptamine hmdbid:HMDB00303
5-Methoxyindoleacetate hmdbid:HMDB04096
5-HydroxyindoleacetylglycineCHEBI:27631
Indole-3-ethanol hmdbid:HMDB03447
3-Methyldioxyindole hmdbid:HMDB04186
2-Formaminochemical
Indole-3-acetaldoximeCHEBI:28311
GlucobrassicinCHEBI:29028
3-MethoxyanthranilateCHEBI:20109
8-Methoxykynurenatechemical
Anthranilate hmdbid:HMDB01123
Anthranilate hmdbid:HMDB01123
3-IndoleacetonitrileCHEBI:17566
Formylanthranilate hmdbid:HMDB04089
N-Methylserotonin hmdbid:HMDB04369
N-Methyltryptamine hmdbid:HMDB04370
(Z)-5-Oxohex-2-enedioatechemical
methoxykynurenaminechemical
-1H-indol-5-olchemical
-L-tryptophanchemical
-2,4-dioxobutanoatechemical
benzoylacetatechemical
-2,4-dioxobutanoatechemical
-4,6-dihydroxypicolinatechemical
L-kynurenine hmdbid:HMDB00183

GPML Annotator: Mm_Unsaturated_Fatty_Acid_Beta_Oxidation_BiGCaT.gpml

Acadluniprot
Hadhauniprot
Hadhbuniprot
Dciuniprot
Acadluniprot
Hadhauniprot
Hadhbuniprot
Acadmuniprot
Decr1uniprot
Dciuniprot
Linoleoyl-CoA hmdbid:HMDB01064
Acetyl-CoA hmdbid:HMDB01206uniprot
cis,cis-3,6-Dodecadienoyl-CoACHEBI:28002
trans,cis-Lauro-2,6-dienoyl-CoACHEBI:28387
4-cis-dexeboyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
2-trans-4-cis-decadienoyl-CoACHEBI:29119
3-trans-decenoyl-CoACHEBI:29126
trans-dec-2-enoyl-CoACHEBI:10723
See Beta Oxidation 2 MAPP

GPML Annotator: Mm_Urea_cycle_and_metabolism_of_amino_groups_KEGG.gpml

Cps1uniprot
Glud1uniprot
Nagsuniprot
Pycsuniprot
2.7.2.8
2.6.1.11
1.2.1.38
Pycsuniprot
2.3.1.35
Otcuniprot
Ass1uniprot
Oat
Pycr1uniprot
Arg1uniprot
Odc1uniprot
Srmuniprot
Smsuniprot
Asluniprot
3.5.1.5
1.2.1.46
1.5.99.1
Gatmuniprot
6.3.4.6
3.5.1.54
3.5.1.59
3.5.2.14
3.5.4.21
3.5.3.3
Gamtuniprot
3.5.2.10
2.7.3.1
Ckmuniprot
2.6.1.69
3.5.1.16
Acy1chemical
Arg2uniprot
Ckbuniprot
Pycrlchemical
Smsuniprot
Glutamate metabolism
Ala and aspartate metabolism
Pyrimidine metabolism
Pro metabolism
Nitrogen metabolism
Amino acid metabolism
D-Arg and D-ornithine metabolism
Citrate cycle (TCA cycle)
Arginine metabolism
Purine metabolism
NH3CHEBI:16134
CarbamoylCHEBI:33100
L-Glutamate hmdbid:HMDB00148
N-Acetyl-glutamate hmdbid:HMDB01138
L-Glutamylchemical
N-Acetyl-L-glutamate hmdbid:HMDB01138
N2-Acetyl-L-ornithineCHEBI:16543
N-Acetyl-L-glutamate hmdbid:HMDB01138
L-Aspartate hmdbid:HMDB00191
L-Citrulline hmdbid:HMDB00904
L-Ornithine hmdbid:HMDB00214
(S)-1-Pyrroline-5-carboxylate hmdbid:HMDB01301
L-Glutamate-chemical
L-Proline hmdbid:HMDB00162
C03406
Spermine hmdbid:HMDB01256
Putrescine hmdbid:HMDB01414
Spermidine hmdbid:HMDB01257
Arginine hmdbid:HMDB00517
Fumarate hmdbid:HMDB00134
Urea hmdbid:HMDB00294
Formate hmdbid:HMDB00142
Formaldehyde hmdbid:HMDB01426
Urea-1-carboxylateCHEBI:15832
CO2CHEBI:16526
Sarcosine hmdbid:HMDB00271
N-MethylhydantoinCHEBI:16354
N-CarbamoylsarcosineCHEBI:15737
Creatine hmdbid:HMDB00064
Creatinine hmdbid:HMDB00562
Guanidinoacetate hmdbid:HMDB00128
creatine-P hmdbid:HMDB01511
Phosphoguanidinoacetate hmdbid:HMDB03705
5-semialdehydechemical

GPML Annotator: Mm_Wnt_NetPath_8.gpml

Wnt3auniprot
Wnt1uniprot
Wnt2uniprot
Lrp6uniprot
Wnt4uniprot
Sfrp1uniprot
Lrp5uniprot
Axin1uniprot
Gsk3buniprot
Lrp6uniprot
Fzd8uniprot
Dkk1uniprot
Dvl1uniprot
Ror2uniprot
Fzd5uniprot
Wnt7auniprot
Fzd2uniprot
Lrp1uniprot
Wnt5auniprot
Arrb2uniprot
Prkcauniprot
Prkcb1uniprot
PRKCGuniprot
Fzd7uniprot
Magi3chemical
Fzd4uniprot
Ltapuniprot
Mapk8uniprot
Map3k7uniprot
HIPK2uniprot
Nlkuniprot
Mybuniprot
Fzd1uniprot
Cxxc4
Csnk1duniprot
Frat1uniprot
Tcfe2auniprot
Tcf4uniprot
Pias4uniprot
Sumo1uniprot
Dvl2uniprot
Rhoauniprot
Daam1uniprot
Csnk1euniprot
Nkd1
Brd7uniprot
Dab2uniprot
Ctnnb1uniprot
Ep300
Fhl2uniprot
Csnk2a1uniprot
Csnk2a2uniprot
Csnk2buniprot
Apcuniprot
Csnk1a1uniprot
Arrb1uniprot
Ctnnbip1uniprot
Cdc25cuniprot
Cdc2auniprot
Ppp2cauniprot
Dvl3uniprot
Mtap1buniprot
Nr5a1uniprot
Ctbp1uniprot
Ctbp2uniprot
Pax2uniprot
Mapk8ip1uniprot
Tbpuniprot
Axin2uniprot
Sox1uniprot
Sall1uniprot
Akt1uniprot
Apcuniprot
Bcl9uniprot
Pin1uniprot
Camk2auniprot
Camk2buniprot
Camk2guniprot
Camk2duniprot
Jupuniprot
Rac1uniprot
Smad3uniprot
Fzd6uniprot
Ctnnb1uniprot
Sfrp2uniprot
Axin1uniprot
Btrcchemical
Tcfap2auniprot
Arrb2uniprot
Runx2uniprot
Mark2uniprot
Cul1uniprot
Skp1auniprot
Smad4uniprot
Tax1bp3uniprot
Cdh1uniprot
Ruvbl1uniprot
Frat2uniprot
Dlgh4uniprot
Dlgh2uniprot
Dlgh1uniprot
Ctnnb1uniprot
Gsk3buniprot
Dvl1uniprot
Apcuniprot
Lef1uniprot
Lef1uniprot
Apcuniprot
Map3k7uniprot
Apcuniprot
Cdc2auniprot
LOC665283
Senp2uniprot
Csnk2a1uniprot
Csnk2a2uniprot
Dvl2uniprot
Dvl1uniprot
Btrcchemical
Ccnd1uniprot
Crybb2uniprot
Jununiprot
Mapk9uniprot
Fzd4uniprot
Fzd1uniprot
Ankrd6
Axin1uniprot
Sox9uniprot
Wnt1uniprot
Wnt2uniprot
Wnt1uniprot
Wnt3auniprot
Mapk3uniprot
Mapk1uniprot
Raf1uniprot
Wnt4uniprot
Akt1uniprot
Fzd1uniprot
Fzd1uniprot
Fzd9uniprot
Wnt1uniprot
Wnt1uniprot
Wnt3uniprot
Molecular Association
Translocation
Phosphorylationchemical
Autophosphorylationchemical
Sumoylationchemical
Desumoylation
Activationchemical
Inhibitionchemical
Acetylationchemical
Ubiquitination
Dephosphorylationchemical
Plasma membrane
PM
Cytoplasm
CY
MT
NucleusCHEBI:33252
CY->NU
CY->NU
NU->CY
CY->NU
CY->NU
CY->NU
CY->PM
CY->PM
CY->PM
D
PM->CY
D
D
D
CY->PM
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
Enzyme Complex
(Protein-protein interaction)
Reaction through unknowm mechanisms/molecules
D
Accession Number: NetPath_8; cellmap:8
Demethylationchemical
Methylationchemical
Palmitoylationchemical
Glycosylation
Deacetylationchemical
Golgi apparatus
Endoplasmic reticulum
Complex formation
Deubiquitination
Control
Recruitment
Proteolytic cleavage
Extracellular
Mitochondrion
Endosome
EN
EC
NU
ER
GO
D
D
D
D

GPML Annotator: Mm_Wnt_Signaling.gpml

Wnt1uniprot
Wnt2uniprot
Wnt2buniprot
Wnt3uniprot
Wnt3auniprot
Wnt4uniprot
Wnt5auniprot
Wnt5buniprot
Wnt6uniprot
Wnt7auniprot
Wnt7buniprot
Wnt10auniprot
Wnt10buniprot
Wnt11uniprot
Wnt9buniprot
Wnt16uniprot
Ldlruniprot
Lrp1uniprot
Fzd1uniprot
Fzd2uniprot
Fzd3uniprot
Fzd4uniprot
Fzd5uniprot
Fzd6uniprot
Fzd7uniprot
Fzd8uniprot
Fzd9uniprot
Prkcauniprot
Prkcb1uniprot
Prkccuniprot
Prkcduniprot
Prkceuniprot
Prkchuniprot
Prkcmuniprot
Prkcquniprot
Prkczuniprot
Dvl1uniprot
Dvl2uniprot
Dvl3uniprot
Ppp2r5euniprot
Ppp2r5cuniprot
Csnk1euniprot
Axin1uniprot
Frat1uniprot
Gsk3buniprot
Apcuniprot
Catnbuniprot
Rhoauniprot
Racgap1uniprot
Mapk9uniprot
Mapk10uniprot
Fbxw2uniprot
Pafah1b1uniprot
Tcf1uniprot
Mycuniprot
Ccnd1uniprot
Ccnd2uniprot
Ccnd3uniprot
Fosl1uniprot
Jununiprot
Plauuniprot
Prkciuniprot
Apoptosis
Cytoskeleton
Phosphorylatedchemical
B
-Cateninchemical
P
NucleusCHEBI:33252
Transcriptional Activation
-Cateninchemical
B
Recruitment to Unknown
Ubiquitin Conjugating Enzymeenzyme
Ubiquitin Tagged
Frizzled Ligands
26S Proteasome Degradation

GPML Annotator: Rn_ACE-Inhibitor_pathway_PharmGKB.gpml

Agtuniprot
Ren1uniprot
Ace
Agtr2uniprot
Kng1uniprot
Ace
Nos3uniprot
Aldosterone hmdbid:HMDB00037
Bdkrb2uniprot
Agtr1uniprot
Angiotensin Iuniprot
Angiotensin IIuniprot
ACE InhibitorCHEBI:35457
Bradykininuniprot
Cell Membrane

GPML Annotator: Rn_Acetylcholine_Synthesis.gpml

Pdha1uniprot
Pdha2uniprot
Pemtuniprot
Ahsguniprot
Pcyt1auniprot
Ache
Chat
Phosphatidylethanolaminechemical
Phosphatidylcholine hmdbid:HMDB02357
Glycerophosphocholine hmdbid:HMDB00086
Choline hmdbid:HMDB00097
Acetyl CoA hmdbid:HMDB01206uniprot
Pyruvate from Glycolysis
Acetate hmdbid:HMDB00042
Choline hmdbid:HMDB00097
Phosphorylcholine hmdbid:HMDB01565
Cytidine Diphosphate Choline hmdbid:HMDB01413
Acetylcholine hmdbid:HMDB00895
*Cytosol*chemical
*Synaptic Cleft*

GPML Annotator: Rn_Adipogenesis.gpml

Igf1uniprot
Ptgisuniprot
Pparduniprot
Creb1uniprot
Mixl1
Id3uniprot
Wnt10buniprot
Stat5auniprot
Stat5buniprot
Dlk1uniprot
Nr3c1uniprot
Ddit3uniprot
Lifuniprot
Cebpbuniprot
Cyp26a1uniprot
Cyp26b1uniprot
Rxrauniprot
Rarauniprot
Nr1h3uniprot
Lpluniprot
Srebf1uniprot
RGD:619831
Gata3uniprot
Gata2uniprot
Pparguniprot
Mef2duniprot
Agrpuniprot
Tnfuniprot
LOC292656
Tgfb1uniprot
Serpine1uniprot
Slc2a4uniprot
Scd1uniprot
Twist1uniprot
Lepuniprot
Retnuniprot
Adnuniprot
Fabp4uniprot
Rb1uniprot
Rbl2uniprot
Acdcuniprot
ADRPuniprot
Agtuniprot
Nsg1uniprot
E2f1uniprot
Sp1uniprot
Hmga1uniprot
Plinuniprot
Il6uniprot
Gadd45auniprot
Gadd45buniprot
Cebpauniprot
RGD:620739
Bmp2uniprot
Bmp3uniprot
Bmp4uniprot
E2f4
Ndnuniprot
Foxo1auniprot
Klf5uniprot
Ppargc1auniprot
Ncoa1uniprot
Ncoa2uniprot
Pparauniprot
Stat3uniprot
Stat2uniprot
Stat1uniprot
Stat6uniprot
Socs1uniprot
Socs3uniprot
RGD:1303100
Lifruniprot
Il6stuniprot
Mbnl1uniprot
Osmuniprot
Catnbuniprot
Ucp1uniprot
RGD:628850
Wnt1uniprot
Madh3uniprot
Fzd1uniprot
Dvl1uniprot
Tcf1uniprot
Rxrguniprot
Frzbuniprot
Ins1uniprot
Ins2uniprot
Pbef1uniprot
Trib3uniprot
Gata4uniprot
Nr2f1uniprot
Nrip1uniprot
Rorauniprot
Prlruniprot
LOC362972
Cugbp1uniprot
Hif1auniprot
Copebuniprot
Klf7uniprot
Sfrp4uniprot
Ncor1uniprot
Ncor2uniprot
Ahruniprot
Klf15uniprot
Egr2uniprot
Ebf1uniprot
Epas1uniprot
RGD1309529
MGC116096
Gdf10uniprot
Irs1uniprot
Irs2uniprot
Irs3chemical
IRS-4
Lmnauniprot
Agpat2uniprot
Zmpste24uniprot
Lpin1uniprot
Lpin2uniprot
Lpin3uniprot
Lipeuniprot
Pck1uniprot
Pck2uniprot
Gh1uniprot
Rbl1uniprot
Mef2auniprot
LOC498607
LOC499495
Cebpduniprot
Foxc2uniprot
Spock1uniprot
Bscl2uniprot
Inhibitors of Preadipocyte to Adipocyte Transition
Transcription Factors/Modulators
Growth Factors/Hormones
Fully Differentiated Adipocyte Markers
Miscellaneous
Preadipocyte
Differentiated adipocyte
Adipocyte Secretory Products
Possible Lipodystrophy Genes
Insulin Action Genes

GPML Annotator: Rn_Alanine_and_aspartate_metabolism_KEGG.gpml

Pc
2.3.1.7
2.6.1.18
Abatuniprot
6.3.2.11
3.4.13.3
4.1.1.11
4.1.1.12
Gad2uniprot
2.6.1.12
Darsuniprot
Gpt1uniprot
Agxtuniprot
6.1.1.7
5.1.1.1
6.3.4.4
Ass
3.5.1.1
3.5.1.38
6.3.1.1
6.3.5.4
4.3.1.1
Asluniprot
4.3.2.2
2.6.1.14
3.5.1.3
1.4.3.2
1.4.3.16
1.2.1.18
2.1.3.2
Got2uniprot
6.3.5.6
Darsuniprot
6.1.1.22
1.4.3.1
1.4.3.15
3.5.1.7
5.1.1.13
Aspauniprot
Gad1uniprot
Got1uniprot
Glycolysis / Gluconeogenesis
Pyrimidine metabolism
Pantothenate and CoA biosynthesis
Fatty acid metabolism
Nicotinate and nicotinamide metabolism
Reductive carboxylatechemical
Citrate cycle (TCA cycle)
Reductive carboxylate cycle (CO2 fixation)
His metabolism
Nicotinate and nicotinamide metabolism
Gly, Ser and Thr metabolism
Lys biosynthesis
Urea cycle and metabolism of amino groups
Arg and Pro metabolism
beta-Ala metabolism
Selenoamino acid metabolism
Cyanoamino acid metabolism
D-Ala metabolism
Pyruvate hmdbid:HMDB00243
O-Acetylcarnitine hmdbid:HMDB00201
Acetyl-CoA hmdbid:HMDB01206uniprot
Carnosine hmdbid:HMDB00033
Malonate semialdehyde hmdbid:HMDB03015
L-Alanyl-tRNACHEBI:17732
ProteinCHEBI:16541
D-AlanineCHEBI:15570
L-Aspartyl-tRNA(Asp)CHEBI:29158
N-Carbamoyl-L-aspartateCHEBI:15859
L-Aspartate hmdbid:HMDB00191
L-Argininosuccinate hmdbid:HMDB00052
Adenylosuccinate hmdbid:HMDB00536
L-Asparagine hmdbid:HMDB00168
Citrate hmdbid:HMDB00094
Oxaloacetate hmdbid:HMDB00223
2-OxosuccinamateCHEBI:16327
2-Oxoglutarate hmdbid:HMDB00208
Succinate hmdbid:HMDB00254
Fumarate hmdbid:HMDB00134
Malate hmdbid:HMDB03256
L-Aspartyl-chemical
L-Asparaginyl-tRNA(Asn)CHEBI:29265
D-AspartateCHEBI:29994
N-Acetyl-L-aspartateCHEBI:16953
cycle (CO2 fixation)
tRNA(Asn)CHEBI:29172
b-Alanine hmdbid:HMDB00056
L-Alanine hmdbid:HMDB00161

GPML Annotator: Rn_Alpha6-Beta4-Integrin_NetPath_1.gpml

Rhoauniprot
Rtknuniprot
Itgb4uniprot
Fynuniprot
Clca3
Ptk2uniprot
Itga6uniprot
Rpsauniprot
Vimuniprot
Clca2
Grb2uniprot
DSTuniprot
ERBINuniprot
Erbb2uniprot
Pik3r1uniprot
Pik3r2uniprot
Pik3r3uniprot
PIK3CAuniprot
Pik3cbuniprot
Pik3cguniprot
Pik3cduniprot
Col17a1uniprot
Shc1uniprot
Mst1runiprot
Sfnuniprot
Lama1uniprot
Lamb1uniprot
Lamc1uniprot
Lama5uniprot
Lamb2uniprot
Lama2uniprot
Lamc1uniprot
Lamb1uniprot
Lama5uniprot
Lamc1uniprot
Lamc1uniprot
Lamb1uniprot
Lama2uniprot
LOC307582
Lamb3uniprot
Lamc2uniprot
Pak1uniprot
Rac1uniprot
Plec1uniprot
Cd151uniprot
Irs2uniprot
Irs1uniprot
Egfruniprot
Ar
Trp73
Ywhabuniprot
Ywhaeuniprot
Ywhahuniprot
Ywhaquniprot
Ywhazuniprot
Yes1uniprot
Dsp
Met
Eif4ebp1uniprot
Eif4euniprot
Itgb4bpuniprot
Lamc1uniprot
Lamb2uniprot
Ntn1uniprot
Akt1uniprot
Casp3uniprot
Bad
Prkcauniprot
Frap1uniprot
Prkcduniprot
Mmp7uniprot
Srcuniprot
Rhoauniprot
Smad2uniprot
Smad2uniprot
Smad3uniprot
Smad3uniprot
Itgb4bpuniprot
Cdkn1auniprot
Itga6uniprot
Itgb4uniprot
Itgb4uniprot
Itga6uniprot
Itgb4uniprot
Itga6uniprot
Itgb4uniprot
Itga6uniprot
Itgb4uniprot
Itga6uniprot
Abl1uniprot
Laminin 1
Laminin 2
Laminin 11
Laminin 4
Laminin 5
Laminin 10
CY->PM
CY->NU
CY->NU
CY->NU
D
D
D
Molecular Association
Deacetylationchemical
Autophosphorylationchemical
D
Translocation
Plasma membrane
Cytoplasm
NucleusCHEBI:33252
Inhibitionchemical
Ligand
Receptor
Gene Symbol
Molecule in the pathway
Activationchemical
Acetylationchemical
Accession Number: NetPath_1; cellmap:1
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
PM
CY
NU
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Phosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
D
D
D
D
D

GPML Annotator: Rn_Androgen-Receptor_NetPath_2.gpml

Ar
HSPA1Auniprot
STUB1uniprot
Cdc37uniprot
Cdc25buniprot
RASuniprot
Raf1uniprot
Map2k1uniprot
Ar
Ar
Ar
Cdk9uniprot
Ctnnb1uniprot
Cavuniprot
Crebbpuniprot
Hdac1uniprot
Sviluniprot
Cdk7uniprot
Ccnhuniprot
Gtf2h1uniprot
Ctdp1uniprot
Gtf2f1uniprot
Gtf2f2uniprot
Ncoa2uniprot
Ncoa1uniprot
Psmc3ip
Nr2c2uniprot
Ncoa3uniprot
Fhl2uniprot
Flnauniprot
Flnauniprot
Aesuniprot
Bag1uniprot
Brca1uniprot
Ccne1uniprot
Ccnd1uniprot
Jununiprot
Calruniprot
Cox5buniprot
Runx2uniprot
Runx1uniprot
Ar
Slc25a4uniprot
Atf2uniprot
Tmf1
Ncoa4
Tgfb1i1
RNF14uniprot
Ran
Rad54l2
Miz1uniprot
Uxtuniprot
Egfruniprot
Ube3auniprot
Esr1uniprot
Pa2g4uniprot
Etv5uniprot
Mmp1auniprot
GAPDHenzymeuniprot
Nr3c1uniprot
Srcuniprot
Mapk1uniprot
Il6stuniprot
Myst2uniprot
Nsd1uniprot
Pou2f1uniprot
Pou2f2uniprot
Akt1uniprot
Mdm2uniprot
Plagl1
RAC3uniprot
Rb1uniprot
Rb1uniprot
Relauniprot
RANBP9uniprot
Nrip1uniprot
Rnf4uniprot
ZNF278uniprot
Pxnuniprot
SPDEFuniprot
Hrmt1l2uniprot
Hrmt1l2uniprot
Pnrc1uniprot
Pias4uniprot
Pias1uniprot
Pias3uniprot
Stat3uniprot
Pnrc1uniprot
Smad3uniprot
Smad4uniprot
SRYuniprot
Nr0b2uniprot
Sp1uniprot
Ncor2uniprot
Tgifuniprot
Ube2iuniprot
Sin3auniprot
Rchy1uniprot
Rchy1uniprot
Hipk3uniprot
Pak6
PCAFuniprot
Akt1uniprot
APPLuniprot
Htatipuniprot
Ep300
Senp1uniprot
Cdc2auniprot
Mapk1uniprot
Jununiprot
Nr3c1uniprot
Il6uniprot
Ptenuniprot
Esr2uniprot
Nr0b1uniprot
Igf1uniprot
GHBPuniprot
Ghruniprot
Tp53uniprot
Casp1uniprot
Casp3uniprot
Casp7uniprot
Casp8uniprot
Hmgb2uniprot
HMGB1uniprot
Ywhahuniprot
Nr5a1uniprot
Esr1uniprot
Androgen (T/DHT)
P
P
P
P
Molecular association
Proteolytic Cleavage
DeSumoylation
Phosphorylationchemical
Activationchemical
Ubiquitination
Translocation
Inhibitionchemical
Enzyme complex
Androgen Independent
P
CY
NU
CY->NU
CY->NU
CY->NU
CY->NU
Gene Symbol
Molecule in the pathway
Cytoplasm
NucleusCHEBI:33252
D
D
D
D
(Protein-protein interaction)
Reactions through unknown mechanisms/molecules
D
Receptor
Ligand
Proteins in a complex interaction
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Sumoylationchemical
Deubiquitination
Recruitment
Control
EC
EN
Extracellular
Endosome
ER
Endoplasmic reticulum
GO
Golgi appparatus
MT
Mitochondrion
PM
Plasma membrane
Androgen Independent
Accession Number: NetPath_2; cellmap:2

GPML Annotator: Rn_Apoptosis.gpml

Traddchemical
Tnfsf10uniprot
Tnfrsf1auniprot
Tnfuniprot
Tnfrsf1buniprot
Trap1uniprot
Traf2uniprot
Map3k1uniprot
Map2k4uniprot
Mapk10uniprot
Fadduniprot
Ripk1uniprot
Birc3uniprot
Birc3uniprot
Birc4uniprot
Casp6uniprot
Casp7uniprot
Casp3uniprot
Casp2uniprot
Bcl2uniprot
RGD:735223
Bcl2l1uniprot
Gzmbuniprot
Prf1uniprot
Tnfsf6uniprot
Bak1uniprot
Bid
Baxuniprot
Mycuniprot
Tp53uniprot
Mdm2uniprot
RGD:727889
Nfkb1uniprot
Apaf1uniprot
Casp9
Cycsuniprot
Cyctuniprot
Nfkbiauniprot
Jununiprot
Bcl2l11uniprot
Bid3uniprot
Bnip3luniprot
Casp10
Dffbuniprot
Dffauniprot
Hellsuniprot
Bad
Casp1uniprot
Casp4uniprot
Casp11uniprot
Casp8uniprot
Traf3uniprot
Tnfrsf25
Ltauniprot
Tnfrsf10buniprot
Tnfrsf21uniprot
Ikbkbuniprot
Chukuniprot
Nfkbibuniprot
Nfkbieuniprot
Nfkbiauniprot
Nfkbibuniprot
Nfkbieuniprot
Nfkb1uniprot
RGD:727889
Birc5uniprot
Trp73
Trp63uniprot
Irf1uniprot
Irf2uniprot
Irf3uniprot
Irf4uniprot
Irf5uniprot
Irf6uniprot
Irf7uniprot
RGD:2323
Cflaruniprot
Tnfrsf1auniprot
Cradduniprot
Traddchemical
Ripk1uniprot
RGD:619831
Diablouniprot
Bcl2l2uniprot
Mcl1uniprot
Bokuniprot
Bbc3uniprot
Pmaip1chemical
Bad
Akt1uniprot
Pik3r1uniprot
Igf1runiprot
Igf2uniprot
Igf1uniprot
Apoptosis
Activator of Cell Death
Inhibitor of Cell Death
Fas Liganduniprot
DNA Fragmentation
e
e
Mitochondrion
p
p
degredation
b
Caspuniprot
b
p53 Related
Interferon regulatory factors
b

GPML Annotator: Rn_B_Cell_Receptor_NetPath_12.gpml

Cd79buniprot
Blkuniprot
Fynuniprot
Lyn
Sykuniprot
Blnkuniprot
Map4k1uniprot
Cd5uniprot
Ptk2uniprot
Ptpn6uniprot
Hcls1uniprot
WAS
Actr2uniprot
Actr3uniprot
Arpc1buniprot
Arpc2uniprot
Arpc3uniprot
Arpc4uniprot
Arpc5uniprot
Hcls1uniprot
Grb2uniprot
Grb2uniprot
Sos1uniprot
Nck1
Vav1uniprot
Plcg1uniprot
Cr2uniprot
Cd19uniprot
Cd81uniprot
Plcg2uniprot
Pik3r1uniprot
Pik3r2uniprot
Pik3ap1
Mapk1uniprot
Elk1uniprot
Btkuniprot
RGD1561386
Shc1uniprot
Bcar1uniprot
Nedd9uniprot
Ptk2buniprot
Hckuniprot
Crkluniprot
LOC365948
Itpr2uniprot
PILRBuniprot
Ptpn11uniprot
Cd22uniprot
Casp9
Casp7uniprot
Cblbuniprot
Sh3bp2uniprot
Vav2uniprot
Prkcmuniprot
SOS2uniprot
Ptpn6uniprot
Itkuniprot
Tecuniprot
Crkuniprot
Rapgef1chemical
Lcp2uniprot
RGD1311584
Dok1uniprot
Ptpn18uniprot
PIP5K1Auniprot
Pip5k2auniprot
Pip5k1auniprot
Pip5k2buniprot
Pip5k1cuniprot
Pip5k2c
Pip5k1auniprot
Pip5k2buniprot
Rps6ka1uniprot
Mapk3uniprot
Rasa1uniprot
Rps6ka1uniprot
Prkcduniprot
Prkcduniprot
Creb1uniprot
Lat2uniprot
Pdpk1uniprot
Akt1uniprot
Akt1uniprot
Gsk3auniprot
RAP2Auniprot
Foxo1auniprot
Inpp5d
Dok3uniprot
Mapk8uniprot
Fcgr2buniprot
Hcls1uniprot
Rps6kb1uniprot
Rps6uniprot
Gab2uniprot
Jununiprot
Atf2uniprot
Mapk14uniprot
Bcl6uniprot
Mapkapk2uniprot
CDK2uniprot
Rb1uniprot
Cdk4uniprot
Cdk6uniprot
Ctnnb1uniprot
Ctnnb1uniprot
Gsk3buniprot
Ikbkbuniprot
Chukuniprot
Nfkbiauniprot
Relauniprot
Reluniprot
Relauniprot
Reluniprot
Prkcb1uniprot
Cd72uniprot
Atp2b4uniprot
Nfatc2uniprot
Nfatc3uniprot
Nfatc2uniprot
Nfatc3uniprot
Ppp3cauniprot
Ppp3cbuniprot
Apsuniprot
Gtf2iuniprot
RGD1564153
PLEKHA2uniprot
Dapp1uniprot
PLEKHA2uniprot
RGD1564153
RGD1562795
Cskuniprot
CARD11uniprot
Bcl10uniprot
Map3k7uniprot
Ikbkguniprot
Ccnd2uniprot
Ccnd3uniprot
Ccne1uniprot
Ccna2uniprot
Hnrpkuniprot
Ptprcuniprot
Ppp3r1uniprot
NFATC1uniprot
PRKCQuniprot
Cdk7uniprot
CD79Auniprot
Dapp1uniprot
HDAC5uniprot
Hdac7auniprot
HDAC5uniprot
Hdac7auniprot
Cycsuniprot
Cycsuniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
Dusp4uniprot
Dusp6uniprot
Stat3uniprot
Stat1uniprot
Zap70_mapped
Bcl2l11uniprot
Mapk4uniprot
RGD1562071
GalNAc4S6STenzymeuniprot
Cmtm3uniprot
Bcl2uniprot
IGHMuniprot
Prkcb1uniprot
Rasgrp3
Brafuniprot
Pdk2uniprot
Baxuniprot
Baxuniprot
Rasgrp3
Gab1uniprot
Pip5k1auniprot
Pip5k2buniprot
Shc1uniprot
Prkceuniprot
Prkceuniprot
Gtf2iuniprot
Itpr1uniprot
Pik3ap1
CARD11uniprot
Rapgef1chemical
Crkuniprot
Btkuniprot
Blnkuniprot
Gab1uniprot
Ptpn6uniprot
Plcg2uniprot
Inpp5d
Chukuniprot
Ikbkbuniprot
Lyn
Sykuniprot
CD79Auniprot
Lyn
Sykuniprot
Lat2uniprot
Rhoauniprot
Gene Symbol
Pik3cguniprot
Lckuniprot
ARP2/3
Complex
Molecular association
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Translocation
Ubiquitination
Cytoplasm
NucleusCHEBI:33252
Mitochondria
CY->NU
CY->NU
CY->NU
CY->NU
CY->PM
CY->PM
CY->NU
CY->PM
CY->PM
Autophosphorylationchemical
Plasma membrane
CY->PM
PM->CY
NU->CY
NU->CY
CY->MT
CY->PM
CY->PM
CY->PM
D
Receptor
Accesion Number: NetPath_12
MA
CY->PM
CY->PM
CY->PM
CY->PM
CY->PM
CY->PM
CY->NU
CY->NU
CY->PM
CY->NU
CY->PM
CY->PM
CY->PM
PM->CY
MT->CY
D
D
D
D
D
D
D
D
D
D
D
D
D
Molecule in the pathway
Proteins in a complex interaction
Enzyme Complex
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
D
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
PM
CY
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
NU
Ligand
D

GPML Annotator: Rn_Biogenic_Amine_Synthesis.gpml

Th
Ddcuniprot
Dbhuniprot
Pnmtuniprot
Pahuniprot
Ddcuniprot
Aanatuniprot
Hdcuniprot
Ddcuniprot
Gad1uniprot
Gad2uniprot
Comtuniprot
Maoauniprot
Ache
Maoauniprot
Tphuniprot
Asmtchemical
Chat
Tyrosine hmdbid:HMDB00158
L-DOPA hmdbid:HMDB00181
Dopamine hmdbid:HMDB00073
Norepinephrine hmdbid:HMDB00216
Epinephrine hmdbid:HMDB00068
Phenylalanine hmdbid:HMDB00159
Tryptophan hmdbid:HMDB00929
5-hydroxy-tryptophanchemical
Serotonin hmdbid:HMDB00259
Acetylserotoninchemical
Melatonin hmdbid:HMDB01389
Histidine hmdbid:HMDB00177
Histamine hmdbid:HMDB00870
Glutamate hmdbid:HMDB03339
GABA hmdbid:HMDB00112
Choline hmdbid:HMDB00097
Acetylcholine hmdbid:HMDB00895
Synthesis pathways for biogenic amines (in blue)
follow solid arrows through enzymatic steps,
while degradation steps follow dashed arrows.

GPML Annotator: Rn_Blood_Clotting_Cascade.gpml

RGD:727845
Serpine1uniprot
Serpinb2uniprot
Platuniprot
Plguniprot
Plauuniprot
F2
RGD:727845
Fgl2uniprot
F5
RGD:621759
RGD:621759
F9
F10uniprot
F7
F7
Fgauniprot
F13auniprot
A2AP
Factor XII
F11uniprot
Factor Xuniprot
Factor XIa
Factor VIIIa
Factor IXa
Factor Xa
Factor Va
Thrombinenzymeuniprot
Fibrin Monomer
Factor XIIIa
Fibrin Polymer
Factor VIIa
+
+
Intrinsic Pathway
Extrinsic Pathway
Tissue Factor
Plasminenzyme
Fibrin
Fibrin Split Products
Thrombolysis
Tissue Injury
Factor XIIa

GPML Annotator: Rn_Calcium_regulation_in_cardiac_cells.gpml

Gnasuniprot
Gnaquniprot
Anxa6uniprot
Ryr2
Fkbp1auniprot
Calruniprot
Casq2uniprot
Adcy7uniprot
Rgs2uniprot
Adcy4uniprot
Ywhahuniprot
Ywhaguniprot
Ywhaeuniprot
Ywhazuniprot
Rgs19uniprot
Prkchuniprot
Prkar2auniprot
Adcy8uniprot
Adcy6uniprot
Prkceuniprot
Prkczuniprot
Prkcduniprot
Prkccuniprot
Prkcauniprot
Adcy2uniprot
Prkar1buniprot
Rgs4uniprot
Rgs16uniprot
Rgs14uniprot
Rgs11uniprot
Rgs10uniprot
Rgs9uniprot
Rgs7uniprot
Prkar2buniprot
Rgs5uniprot
Prkacauniprot
Rgs3uniprot
Rgs1uniprot
Adcy5uniprot
Adcy3uniprot
Prkar1auniprot
Rgs6uniprot
Gng2uniprot
Gnb5uniprot
Gnb1uniprot
Gprk6uniprot
Plcb3uniprot
Gng4uniprot
Gprk2luniprot
Gprk5uniprot
Pkibuniprot
Calm2uniprot
Pkiguniprot
Pkiauniprot
Gng3uniprot
Gng11uniprot
Gng5uniprot
Gng12uniprot
Gng8uniprot
Gng7uniprot
Ywhabuniprot
Plcb3uniprot
Arrb2uniprot
Arrb1uniprot
Calm1uniprot
Ryr3
Itpr1uniprot
Itpr2uniprot
Itpr3uniprot
Calm3uniprot
Gna11uniprot
Ryr1
Atp2a2uniprot
Atp2a3uniprot
Camk2auniprot
Camk2buniprot
Camk2guniprot
Camk2duniprot
Camk1uniprot
Camk4uniprot
Cacnb3uniprot
Cacnb1uniprot
Atp2b3uniprot
Atp2b2uniprot
Atp2b1uniprot
Slc8a3uniprot
Slc8a1uniprot
Atp1a4uniprot
Atp1b1uniprot
Atp1b2uniprot
Atp1b3uniprot
Fxyd2uniprot
Chrm1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Chrm5uniprot
Cacna1cuniprot
Cacna1duniprot
RGD:2246
Cacna1suniprot
Cacna1auniprot
Cacna1buniprot
Adrb1uniprot
Adrb3uniprot
Adrb2uniprot
Adra1auniprot
Adra1buniprot
Adra1duniprot
Gja1uniprot
Gja3uniprot
Gja4uniprot
Gja5uniprot
Gja6uniprot
RGD:628889
Gja8uniprot
Gja9uniprot
Gjb1uniprot
Gjb2uniprot
Gjb3uniprot
RGD:621829
Gjb5uniprot
Gjb6uniprot
Kcnj3uniprot
Kcnj5uniprot
Kcnb1uniprot
Gnai1uniprot
Gnai2uniprot
Gnai3uniprot
Gnaouniprot
Gnazuniprot
Ywhaquniprot
Gnb3uniprot
Gnb2uniprot
Gng1uniprot
Gng13uniprot
Prkcbuniprot
Prkcl
Gja12uniprot
Gja10uniprot
Adcy1uniprot
Adcy9uniprot
Gnb4uniprot
Plnuniprot
Prkacbuniprot
Prkcmuniprot
PRKCQuniprot
Rgs17uniprot
Rgs18uniprot
Rgs20uniprot
Sfnuniprot
cAMP hmdbid:HMDB00058
Ca2+CHEBI:29108
Na+CHEBI:29101
Na+CHEBI:29101
P
FKBP12uniprot
P
Ca
IP3
DAGuniprot
PIP2uniprot
SR
GRK
Calmodulinuniprot
PKA Inhibitors
beta Arrestin
Protein Kinase Auniprot
Signaling
PKC inhibitor Protein-1
Adenylyl Cyclasesenzymeuniprot
G
Regulators of G-protein
bg
Protein Kinase Cuniprot
Protein Kinase Auniprot
Na2+
Repolarization
Cytosolic Cachemical
2+
Ca
2+
Calreticulin-Ca
Calsequestrin C-Cachemical
Calsequestrin S-Cachemical
2+
2+
2+
2+
Cytosolic Cachemical
ATP hmdbid:HMDB00538
ADP + Pi
Phopholambanchemical
ADP + Pi
2+
Cytosolic Cachemical
Acetylcholine hmdbid:HMDB00895
Epinephrine hmdbid:HMDB00068
Epinephrine hmdbid:HMDB00068
IP4
IP3 Receptors
Ca
2+
2+
Cytosol
CaM kinaseenzyme
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
CaM kinaseenzyme
K+
Ca
2+
ATP hmdbid:HMDB00538
Dihydropyridine-Sensitive
Membrane
Depolarization
Ca
2+
Ca
2+
Na+/Ca2+ Exchanger
Na+/K+ ATPase
ATP hmdbid:HMDB00538
Adrenergic Receptor
a
L-Type Ca2+ Channel
M1 Muscarinic Receptor
b
Adrenergic Receptor
Cyclasesuniprot
Adenylylchemical
G
b
G
g
G
bg
IP3 Receptors
Connexin
Connexin
Gap Junctions (Connexins)
Ca
2+
Ca
2+
b
arrestin/GRK
b
arrestin/GRK
G alpha i/o/z
K+
K+
G
bg
G alpha i/o/z

GPML Annotator: Rn_Cell_cycle_KEGG.gpml

Mcmd6uniprot
WEE1uniprot
Pttg3chemical
Rb1uniprot
Rb1uniprot
Cdc25buniprot
Elavl3uniprot
Elavl3uniprot
Cdk4uniprot
Ccnhuniprot
Gsk3buniprot
Tgfb1uniprot
Madh3uniprot
Madh4uniprot
Ccnd3uniprot
Ccnd2uniprot
Ccne1uniprot
Cdkn1auniprot
Ccna2uniprot
Pcnauniprot
Ywhaguniprot
Gadd45auniprot
Cdc25auniprot
Elavl3uniprot
Ccne2uniprot
Tp53uniprot
Prkdcuniprot
Chek2uniprot
Mps1uniprot
Mad2l1uniprot
Cdc2uniprot
Cdkn1auniprot
Ccnb1uniprot
Ccnb2uniprot
CycB3uniprot
Cdc2auniprot
Rb1uniprot
Rbl1uniprot
Cdc7uniprot
Dbf4uniprot
Cdc45uniprot
Cdc6uniprot
Cdkn1auniprot
Myt1uniprot
SKP2uniprot
Cdc14auniprot
Cdc14buniprot
Bub2
Men
Cdc20uniprot
Espl1uniprot
Smc1l1uniprot
Mdm2uniprot
ARFuniprot
E2f1uniprot
Mst1uniprot
E2f3uniprot
E2f5uniprot
E2f4
Rbl1uniprot
E2f6uniprot
Ube2f
DP1uniprot
Cdh1uniprot
SKP2uniprot
Orc1luniprot
14-3-3
Plk1uniprot
Orc6luniprot
Orc3luniprot
Orc5luniprot
RGD:735212
RGD:1303018
Mcmd4uniprot
Mcm5uniprot
Mcm3uniprot
Bub1uniprot
Bub1buniprot
Atmuniprot
Abl1uniprot
Atruniprot
Mad2l2uniprot
Bub3uniprot
Ep300
Pttg1uniprot
Pttg2chemical
Cdc25cuniprot
Cdk6uniprot
Mad1l1uniprot
Orc2luniprot
RGD:2323
Cdkn1buniprot
Ccna2uniprot
RGD:619975
RGD:619976
Hdac3uniprot
RGD:619979
Hdac5uniprot
Hdac6uniprot
Hdac7auniprot
HDAC8uniprot
Mcm2uniprot
Chek1uniprot
MAPKenzymeuniprot
signaling
pathway
Growth Factor
withdrawal
R-point
(Start)
+p
e
e
p16,15,18,19
p27,57
p21uniprot
Histone Deacetylasesuniprot
+u
+u
+u
+p
e
e
e
Apoptosis
+p
+p
+p
+p
+p
+p
+p
+p
+p
HDAC
E2F
DNACHEBI:16991
SCFuniprot
ORC
MCMuniprot
+p
DNACHEBI:16991
DNA biosynthesis
S-phase proteins
+p
SCFuniprot
APC/C
-p
APC/C
+u
DNA damage checkpoint
Securinuniprot
Separin hmdbid:HMDB05005uniprot
Condensin
Transcription Factor E2F
Ubiquitinuniprot
mediated
proteolysischemical
ORC (Origin
Recognition Complex)
MCM (Mini-Chromosome
Maintenance) complex
G1
M
G2
S
+p
+u
+p
-p
Growth Factor
+p
+p

GPML Annotator: Rn_Cholesterol_Biosynthesis.gpml

Fdpsuniprot
Idi1uniprot
Hmgcs1uniprot
Hmgcruniprot
Mvkuniprot
Mvduniprot
Fdpsuniprot
Fdft1uniprot
Dhcr7uniprot
Lssuniprot
Sqleuniprot
Cyp51uniprot
Sc4moluniprot
Nsdhluniprot
Pmvkuniprot
SC5DLuniprot
Acetyl-CoA hmdbid:HMDB01206uniprot
HMG-CoA hmdbid:HMDB01375
Geranyl-PP hmdbid:HMDB01285
Squalene hmdbid:HMDB00256
Squalene-2,3-Epoxide hmdbid:HMDB01188
Lanosterol hmdbid:HMDB01251
Lathosterol hmdbid:HMDB01170
7-dehydro Cholesterol hmdbid:HMDB00032
Cholesterol hmdbid:HMDB00067
Mevalonate hmdbid:HMDB00227
Mevalonate-5-Pchemical
Mevalonate-5-PPchemical
Delta-Isopentenyl-5-PPchemical
trans-trans-farnesyl-pp
DiMethylally-PPchemical
Fatty Acid Degradation

GPML Annotator: Rn_Circadian_Exercise.gpml

Myf6uniprot
Bteb1uniprot
Herpud1uniprot
Sf3a3uniprot
Cbx3uniprot
Oazinuniprot
Psma4uniprot
Zfr
Sumo1uniprot
Hist1h2bnuniprot
Purauniprot
Cry2uniprot
Per1uniprot
Per2uniprot
Cry1uniprot
Ppp1r3cchemical
Cebpbuniprot
Ppp2cbuniprot
NCOA4uniprot
ETV6uniprot
RGD:708372
RGD:735053
Hspa8uniprot
Dnaja1uniprot
Ucp3uniprot
Gstm5uniprot
Ugp2uniprot
Cldn5uniprot
LOC500614
Tubb3uniprot
Gfra1uniprot
Map3k7ip2uniprot
LOC499417
Gstp2uniprot
Nckap1uniprot
Vapauniprot
RGD1311800
LOC503172
Idi1uniprot
RGD:621126
LOC499022
RBPMSuniprot
G0s2uniprot
Arntluniprot
Nr1d2uniprot
Clock
Btg1uniprot
Eif4g2uniprot
Per1uniprot
Per2uniprot
E-Box
E-Box
LRE
LRE
Cry1uniprot
Cry2uniprot
Per
Cry
Metabolism
Chaperone
Protein Modification
Transcription
Cell Cycle
DNA/RNA Binding
Other
Structural/Cytoskeleton
Signaling
mHrts
mHrts
mHrts
mSCNp
mLvrs,pchemical
mLvrp mSCNp
mHrts
mSCNp
mHrts
mLvrs
mHrts
mHrts
mHrts
mLvrs
mLvrs
mLvrp
mLvrp
mLvrp
mSCNp
mLvrs,pchemical
mLvrs,p SCNp
mHrts
mLvrs
mSCNp
mSCNp
mLvrs,pchemical
mLvrp mSCNp
mLvrs
mLvrs
mHrts
mLvrp
mSCNp
mHrts
mHrts
mLvrs,pchemical
mLvrp
mLvrp
mHrts Lvrsp
mHrts mLvrs
mLvrs,pchemical
mHrts mLvrs, mSCNp
NucleusCHEBI:33252
mHrts mLvrs,p mSCN
mHrts mLvrs,p
mHrts mLvrs
mHrts mLvrp
mHrts mLvrs,p mSCNp

GPML Annotator: Rn_Complement_Activation_Classical.gpml

C1qauniprot
C1qbuniprot
C3
C9
C4auniprot
C1runiprot
C1suniprot
C2
C6
C7
Masp1uniprot
Daf1uniprot
C5
C8
C1qcuniprot
antigen/antibody
complex
C1 complex
aggregated IgG,
IgM-antigen complex,
polyanions, RNA, DNA
lipopolysacharides
Membrane
attack complex
IonsCHEBI:24870
H O
2
Cytoplasm
Plasma
Membrane
Prevents Complement Attack
Proteolytic Cleavage
Complex
Formation

GPML Annotator: Rn_Complement_and_Coagulation_Cascades_KEGG.gpml

C1qbuniprot
C1suniprot
C2
C3
Hc
C6
C9
Masp1uniprot
Mcpuniprot
Crryuniprot
Cfiuniprot
Masp2uniprot
C4bpuniprot
C3ar1uniprot
C5r1uniprot
Adnuniprot
Cfhuniprot
F3
F7
F9
RGD:727845
RGD:621759
F10uniprot
F5
F2
Fgbuniprot
Serpind1uniprot
Cpb2uniprot
Tfpiuniprot
F2runiprot
Serpina1uniprot
Procuniprot
Pros1uniprot
Platuniprot
Plauuniprot
Thbduniprot
Plauruniprot
Plguniprot
Kng1uniprot
Serpinf2uniprot
Bdkrb1uniprot
C7
C8buniprot
C1qauniprot
C1qguniprot
C1runiprot
C4auniprot
Mbl1uniprot
Cd59uniprot
Cr2uniprot
Crryuniprot
Daf2uniprot
Daf1uniprot
F12uniprot
F11uniprot
F13buniprot
H2-Bfuniprot
Klkb1uniprot
Serpina5uniprot
Serpinc1uniprot
RGD:735225
Serpine1uniprot
A2muniprot
membrane attack complex
Cell lysis
C3
Convertase
C3b
Antibody/antigen
complex
C4b/2a
Muscle contraction,
Chemotaxis,
Phagocyte recruitment
Inflammation, etc.
C5a
C3a
C4auniprot
C3b/4b, C3b, C3d
Mediators
Classical Pathway
C3b/Bb
insulin, etc.
Zymosan
Alternative Pathway
Complement Cascade
Lectin Pathway
Thrombinenzymeuniprot
Clot
fibrin degredation
Vascular injury
products
Fibrin
monomer
Cross-linked
fibrin polymer
Platelet, monocyte,
lymphocyte,
endothelial cells,
smooth muscle cells
activation, etc.
Coagulation Cascade
Extrinsic pathway
Degredation
Cell adhesion,
migration,
proliferation, etc.
Cell adhesion,
migration,
proliferation, etc.
Bradykininuniprot
Collagen,
basement membrane,
activated platelets, etc.
Fibrinolytic system
Kinin kallikrein system

GPML Annotator: Rn_Cytokines_and_Inflammatory_Response_Biocarta.gpml

Cxcl1uniprot
Tnfuniprot
Il1buniprot
Il1auniprot
Il6uniprot
Tnfuniprot
IL1b
IL1a
TNFuniprot
Tgfb1uniprot
Pdgfauniprot
TNFuniprot
IL1a
IL1b
TNFuniprot
IL1a
IL1b
IL6uniprot
IL11uniprot
RGD:628704
Csf1uniprot
Csf2uniprot
G-csf
IL1b
IL6uniprot
IL12
IL15uniprot
IL3uniprot
IL6uniprot
IL7uniprot
GM-csf
IL3uniprot
IL4uniprot
IL10uniprot
IL13uniprot
IFNa
IFNg
TNFuniprot
IL12 (via APC)
IL15uniprot
IL2uniprot
IFNg
IL15uniprot
IL3uniprot
IL4uniprot
IL10uniprot
IL4uniprot
IL10uniprot
IL4uniprot
IL6uniprot
TGFb
IL2uniprot
IL4uniprot
IL13uniprot
IL5uniprot
TGFb1
IL2uniprot
IFNg
IL5uniprot
IL1a
IL2uniprot
TNFuniprot
IFNb
IFNa
IL10uniprot
IL2uniprot
IL2uniprot
IL3uniprot
CD4uniprot
GRO1uniprot
Macrophage
Neutrophil
T-helper
Hypothalamus
Fibroblasts
Endothelial Cells
Inflammatory Response
Hematopoietic Stem Cell
Hematopoiesis
T-helper
Lymphocyte Activated
Mast Cell
B Cell
B Cell
B Cell
Plasma Cell
Antibodies
Killer Cells (LAK)
Eos
Eos
Eos
Th
Th
Th
Tc
Tc
Tc
clonal expansion of T cells
(fever)
MHC II
TCR
NK cell
B Cell

GPML Annotator: Rn_Delta-Notch_NetPath_3.gpml

Notch1uniprot
Notch2uniprot
Notch3uniprot
Notch4uniprot
Dll1uniprot
Dll4uniprot
Jag1uniprot
Jag2uniprot
Psen1uniprot
Psen2uniprot
Aph1auniprot
Aph1buniprot
Psenenuniprot
Ncstnuniprot
Adam10uniprot
Dll1uniprot
Dll1uniprot
Adam17uniprot
Notch1uniprot
Notch1uniprot
Notch2uniprot
Notch4uniprot
Gsk3buniprot
Notch2uniprot
Gsk3buniprot
Numb
Itchuniprot
App
Numbluniprot
Pik3r1uniprot
Pik3r2uniprot
Akt1uniprot
Pcsk3uniprot
Cntn1uniprot
Nov
DTX1uniprot
Ascl1uniprot
Ep300
Tp53uniprot
Lfnguniprot
Mfnguniprot
Pofut1uniprot
Skp1auniprot
FBXW7uniprot
Hey1uniprot
MAML2uniprot
Glrp1
Maml1uniprot
RGD1561926
Ncor2uniprot
NCOR1uniprot
Hdac1uniprot
RGD1309199
SAP30uniprot
Hdac2uniprot
Sin3auniprot
Hes1uniprot
Stat3uniprot
Jak2uniprot
NCOR1uniprot
Ncor2uniprot
Relauniprot
Nfkbiauniprot
Hey2uniprot
Tle1uniprot
Relauniprot
Smad3uniprot
Smad4uniprot
Yy1uniprot
CDK2uniprot
Lef1uniprot
RGD1563119
Skp1auniprot
Cul1uniprot
RGD1562456
Rbx1uniprot
Tcfe2auniprot
Mapk3uniprot
Mapk1uniprot
Wdr12uniprot
PCAFuniprot
Fhl1uniprot
Ring1uniprot
Hivep3
SPENuniprot
Ep300
Smad1uniprot
Hes6uniprot
GATA1uniprot
MAGEA1uniprot
Cntfruniprot
Cntfuniprot
Hes5uniprot
Stat3uniprot
Jununiprot
RBPSUHuniprot
Notch3uniprot
DTX1uniprot
RGD1562456
Egfuniprot
Egfruniprot
Jag1uniprot
Jag1uniprot
Jag2uniprot
Notch1uniprot
Dll4uniprot
Jag2uniprot
Notch3uniprot
Notch1uniprot
Notch1uniprot
Notch2uniprot
Lckuniprot
Molecular association
Phosphorylationchemical
Proteolytic Cleavage
Ubiquitination
Translocation
Gamma secretase complex
Intracellular Domain
-- ICD
ICD
ICD
ICD
ICD
ICD
Glycosylation
PM
GO->PM
CY->NU
NU->CY
PM->NU
PM->NU
PM->NU
NU->CY
NU->CY
D
D
D
GO->PM
PM->CY
PM->NU
ICD
(Protein-protein interaction)
Activationchemical
Inhibitionchemical
D
Reactioin through unknown mechanisms/molecules
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
CY
Plasma membrane
Cytoplasm
GO
Golgi apparatus
NucleusCHEBI:33252
NU
CY->NU
CY->NU
CY->NU
Accession Number: NetPath_3; cellmap:3
Enzyme complex
D
D
CY->NU
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Sumoylationchemical
Desumoylation
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
MT
Mitochondrion

GPML Annotator: Rn_DNA_replication_Reactome.gpml

Rpa2uniprot
Rpa3uniprot
RPA4uniprot
POLAuniprot
RGD:621380
PRIM2Auniprot
Pole2uniprot
Pole
Orc3luniprot
Orc2luniprot
Orc5luniprot
RGD:735212
Orc1luniprot
Orc6luniprot
Gmnnuniprot
CDT1uniprot
Mcm6uniprot
Mcm5uniprot
Mcm4uniprot
LOC367976
Mcm2uniprot
RGD:1303018
Mcm10uniprot
Cdk2uniprot
Pola2uniprot
Rfc5uniprot
Rfc4uniprot
Rfc3uniprot
Rfc2uniprot
Recc1uniprot
Pcnauniprot
ASKuniprot
Cdc7uniprot
Rpa1uniprot
LOC287961
Pold2uniprot
Pold3uniprot
Pold4uniprot
Pold1uniprot
Cdc6uniprot
Ubcuniprot
Mcm3uniprot
Origin
Orc3uniprot
Orc2uniprot
Orc5uniprot
Orc2uniprot
Orc3uniprot
Orc5uniprot
Orc4uniprot
Orc1uniprot
Orc3uniprot
Orc5uniprot
Orc4uniprot
Orc2uniprot
Cdc6uniprot
Cdc6uniprot
Cdt1uniprot
Cdt1uniprot
Gemininuniprot
Cdc6uniprot
Cdt1uniprot
Mcm10uniprot
Cdt1uniprot
Phosphorylation of Mcm 2-7 complex
DNA polymerase alpha: primase: origin complex
DNA polymerase alpha: primase: origin complex
CTP hmdbid:HMDB00082uniprot
GTP hmdbid:HMDB01273
UTP hmdbid:HMDB00285
ATP hmdbid:HMDB00538
RNA Primer
dCTP hmdbid:HMDB00998
dGTP hmdbid:HMDB01440
dUTP hmdbid:HMDB01191
dATP hmdbid:HMDB01532
Phosphorylated Orc1
Ubiquitinuniprot
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
Phosphorylated Cdc6
Ubiquitinated Orc1
Ubiquitinated Cdc6
Degraded by proteasome in cytosol
Degraded by proteasome in cytosol
RNA primer-DNA primer
RNA primer-DNA primer
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
p49uniprot
p58uniprot
p70uniprot
p180uniprot
RFC36uniprot
RFC37uniprot
RFC38uniprot
RFC40uniprot
RFC140uniprot
Mcm 4,6,7 trimer forms and associates
Ubiquitinuniprot
with the replication fork
Orc2uniprot
Orc3uniprot
RFC Heteropentamer:RNA primer-DNA primer
ATP hmdbid:HMDB00538
PCNA homotrimer
RFC Heteropentamer:RNA primer-DNA primer:
RNA primer-DNA primer:origin duplex:PCNA
Primase
DNA Polymeraseuniprot
a
Pre-replicative complex
2. Activation of the pre-replicative complex
3. DNA replication initiation
Pre-replicative complex
1. Assembly of the pre-replicative complex
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm6uniprot
Mcm7uniprot
Orc Complex
Cdc6uniprot
Cdt1uniprot
Mcm2uniprot
Mcm3uniprot
Mcm4uniprot
Mcm6uniprot
Mcm7uniprot
4. Switching of origins to post-replicative state
5. Leading/lagging strand synthesis
Orc complex
Processive complex
Orc complex
Orc complex
Orc complex
Mcm5uniprot
Mcm5uniprot

GPML Annotator: Rn_EGFR1_NetPath_4.gpml

Egfuniprot
Raf1uniprot
Hrasuniprot
Nrasuniprot
Krasuniprot
Shoc2uniprot
Pik3r1uniprot
Map3k2uniprot
Grb14uniprot
Grb2uniprot
RGD1566234
Map3k3uniprot
Sos1uniprot
Grb7uniprot
Pik3r2uniprot
Shc1uniprot
Pik3r3uniprot
PIK3CAuniprot
Pik3cbuniprot
Pik3cduniprot
Pik3cguniprot
Gab1uniprot
Gab2uniprot
Jak1uniprot
Stat1uniprot
Jak2uniprot
Stat3uniprot
Stat5auniprot
Stat2uniprot
Stat5buniprot
Map2k1uniprot
Prkcauniprot
MAP3K1uniprot
Prkczuniprot
Prkcmuniprot
Prkciuniprot
Prkcb1uniprot
Prkccuniprot
Map2k2uniprot
Map2k3uniprot
Map2k5uniprot
Map3k4uniprot
Vav1uniprot
RGD1565941
Vav2uniprot
MAPK7uniprot
Mapk1uniprot
Mapk3uniprot
Elk4uniprot
Elk1uniprot
Mapk8uniprot
Map2k7
Ptprruniprot
Gja1uniprot
Ywhabuniprot
WNK1uniprot
Egfruniprot
Krt2-7
Krt2-8uniprot
Ka17
Krt1-18uniprot
HIST3H3uniprot
SNRPD2uniprot
EPPK1uniprot
Plec1uniprot
Ptpn12uniprot
Stat3uniprot
Plscr1uniprot
Errfi1uniprot
Dok2uniprot
Pitpnauniprot
Cblcuniprot
Cblbuniprot
Pld2uniprot
Pld1uniprot
Prkcauniprot
Eps15uniprot
Eps8uniprot
Hdhuniprot
Pik3c2b
Sh3bgrluniprot
Cskuniprot
RGD1561642
Ralbp1uniprot
Ralbuniprot
Reps1uniprot
Tnk2uniprot
Abi1uniprot
SOS2uniprot
Dnm1uniprot
Sh3gl3uniprot
Cdc42uniprot
Spry2uniprot
Junduniprot
Fosuniprot
Cebpauniprot
Mycuniprot
Cebpbuniprot
Pebp1uniprot
Tcfcp2l2uniprot
Sin3auniprot
Tgifuniprot
Hdac1uniprot
Sh3kbp1uniprot
Sh3gl2uniprot
Jununiprot
Sp1uniprot
Akt1uniprot
PTPN5uniprot
Sncauniprot
Rps6ka1uniprot
RGD1563860
Rps6ka2uniprot
Ap2a1uniprot
WASLuniprot
Ceacam1uniprot
Eef1a1uniprot
APPLuniprot
RGD1563028
Mta2uniprot
LOC361120
Epn1uniprot
Hip1uniprot
Rfxankuniprot
Mapk14uniprot
Tnip1uniprot
Egfruniprot
Egfruniprot
Rbbp7uniprot
Ddef1uniprot
Stxbp1uniprot
Ctnnd1uniprot
Pkn2uniprot
Pak1uniprot
Sh2d3cuniprot
Bcar1uniprot
Casp9
Rps6ka5uniprot
Smad2uniprot
Smad3uniprot
Smad2uniprot
Smad3uniprot
Atf1uniprot
Creb1uniprot
Foxo1auniprot
Pxnuniprot
Elf3
Hat1uniprot
Camk2auniprot
Itchuniprot
Arafuniprot
Mcf2chemical
Elf3
RGD1563860
Map3k2uniprot
Foxo1auniprot
Eps15uniprot
Eef1a1uniprot
Stat1uniprot
Stat3uniprot
Stat2uniprot
Stat5auniprot
RGD1562173
Plcg1uniprot
Spry2uniprot
Plcg2uniprot
Plcg2uniprot
Ptpn6uniprot
Raf1uniprot
Gab1uniprot
Shc1uniprot
Pld1uniprot
Bcar1uniprot
Sh2d3cuniprot
Stxbp1uniprot
APPLuniprot
APPLuniprot
RGD1563028
Stat1uniprot
Srcuniprot
RGD1561386
Crkuniprot
Crkluniprot
RGD1565358
Rac1uniprot
Ptk2buniprot
Cavuniprot
Cav2uniprot
Nck1
Nck2uniprot
Plcg1uniprot
Git1uniprot
Rgs16uniprot
Socs1uniprot
Socs3uniprot
Inppl1
Rab5auniprot
Usp6nluniprot
Arf4uniprot
RGD1562173
Ripk1uniprot
Map3k14uniprot
Ralgdsuniprot
Rasa1uniprot
Ptk6uniprot
PRKAR1Auniprot
Ptpn6uniprot
Ptpn11uniprot
Mapk1uniprot
Map2k1uniprot
Dusp1uniprot
Dusp1uniprot
Arf4uniprot
Arf4uniprot
Egfuniprot
Egfuniprot
Sh3gl2uniprot
Egfruniprot
Molecular association
Translocation
Cytoplasm
NucleusCHEBI:33252
Autophosphorylationchemical
Phosphorylationchemical
Receptor
Ligand
Molecule in the pathway
Enzyme complex
Plasma membrane
Extracellular
Gene Symbol
PM
CY
PM
NU
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
MA
CY
NU
NU
CY
MA
MA
MA
MA
CY
NU
NU
CY
CY
NU
NU
CY
CY
PM
NU
CY
MA
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
PM
CY
PM
CY
PM
CY
NU
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
PM
CY
CY
NU
PM
CY
PM
CY
NU
CY
NU
CY
NU
CY
PM
CY
PM
NU
PM
CY
PM
EN
PM
EN
PM
CY
NU
EC
Proteins in a complex interaction
(Protein-protein interaction)
Autodephosphorylationchemical
Acetylationchemical
Accession Number : NetPath_4; cellmap:4
MA
MA
D
D
D
Reaction through unknown mechanisms/molecules
MA
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Desumoylation

GPML Annotator: Rn_Eicosanoid_Synthesis.gpml

Ptgisuniprot
Tbxas1uniprot
Ptgdsuniprot
Ptgesuniprot
PGE2 9-ketoreduc
Ptgs1uniprot
Ptgs2uniprot
Alox5apuniprot
Alox5uniprot
Dpep1uniprot
Tgm2uniprot
Ltc4suniprot
Peroxidase?
Alox5uniprot
Alox5apuniprot
Peroxidase?
Alox15uniprot
Alox15uniprot
Pla2g2cuniprot
Pla2g2cuniprot
Pla2g2auniprot
Alox15buniprot
Peroxidase?
Pla2g6uniprot
Lta4huniprot
Alox12euniprot
Ltb4
PGD2 11-ketoreduc
Cell Membrane
Arachadonic Acidchemical
PGH2 hmdbid:HMDB01381
5-HPETE
12-HPETE
15-HPETE
15-HETE
12-HETECHEBI:19138
LTC4 hmdbid:HMDB01198
LTD4CHEBI:28666
LTE4 hmdbid:HMDB02200
PGI2 hmdbid:HMDB01335uniprot
PGF2-alphachemical
PGD2 hmdbid:HMDB01403
TXA2 hmdbid:HMDB01452
Lipox = Lipoxygenase
ETE = Eicosatetraenoic Acid
HP = Hydroperoxy
H = Hydroxy
diH = Dihydroxy
PG = Prostaglandin
LT = Leukotriene
TX = Thromboxane
6-KetoPGF2-alphachemical
5-HETECHEBI:28209
LTA4 hmdbid:HMDB01337uniprot
LTB4uniprot
TXB2CHEBI:28728
TXA3
PGE2 hmdbid:HMDB01220

GPML Annotator: Rn_Electron_Transport_Chain.gpml

Mtnd1uniprot
Mtnd4uniprot
Rpl36uniprot
Mtnd6uniprot
Mlrq
Ndufs6uniprot
Rabep2uniprot
Cycsuniprot
Cyctuniprot
Cox4i1uniprot
Cox5auniprot
Cox5buniprot
Cox6a2uniprot
Cox6a1uniprot
Cox6cuniprot
Cox7a3uniprot
Cox8huniprot
Cox8auniprot
Cox17uniprot
Surf1uniprot
Atp5a1uniprot
Atp5buniprot
Atp5c1uniprot
Atp5duniprot
Atp5euniprot
Atp5juniprot
Atp5ouniprot
Sbkuniprot
Atp5f1uniprot
Atp5g1uniprot
Atp5g2uniprot
Atp5g3uniprot
Ucp1uniprot
Ucp2uniprot
Ucp3uniprot
Slc25a4uniprot
Slc25a5uniprot
Mtnd4luniprot
Mtnd3uniprot
Mtnd2uniprot
Sdhauniprot
Sdhbuniprot
LOC308770
Slc25a14uniprot
Slc25a6
Mtco1uniprot
Mtco2uniprot
Latuniprot
Cox7cuniprot
Atp5iuniprot
Ndufa5uniprot
Ndufv2uniprot
Sdhcuniprot
Sdhduniprot
RGD:1303314
Uqcrc2uniprot
RGD:628838
Cox6buniprot
RGD:727789
C subunit
F1 Complex
Stalk
F0 Complex
Uncoupling Protein
Complex Iuniprot
Complex IV
Complex III
Complex II
Oxidoreductaseenzyme
NADH-Ubiquinonechemical
Succinate-Ubiquinonechemical
Oxidoreductaseenzyme
Ubiquinol-Cytochrome Cchemical
Reductaseenzyme
Cytochrome C
Oxidase
ATP Synthase (Complex V)
Adenine Nucleotidechemical
Translocator
Ubiquinone hmdbid:HMDB02012

GPML Annotator: Rn_Fas_Pathway_and_Stress_Induction_of_HSP_Regulation_Biocarta.gpml

Daxxuniprot
Daxxuniprot
Tnfsf6uniprot
RGD:619831
Hspb1uniprot
Tnfuniprot
Il1auniprot
Mapkapk2uniprot
Mapkapk3uniprot
Cycsuniprot
Bcl2uniprot
Casp9
Apaf1uniprot
Apaf1uniprot
Casp3uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
Hspb1uniprot
actinuniprot
Fadduniprot
Faf1uniprot
Faf1uniprot
LOC498331
Casp8uniprot
Casp8uniprot
Cflaruniprot
LOC500417
Caspase 7
Caspase 3
Adprtuniprot
Pak1uniprot
Pak2uniprot
Arhgdibuniprot
Spna1uniprot
Dffauniprot
Dffbuniprot
Dffbuniprot
DNA-PK
Caspase 6
Lmnauniprot
Lmnb1uniprot
LOC299625
Rb1uniprot
Map3k1uniprot
Map2k4uniprot
Mapk8uniprot
Map3k7uniprot
Jununiprot
casp10
Stress
Mitochondria Pathway
Apoptosome
Proteasomeenzyme
NFK-B
Pathway
ROSCHEBI:26523
Cell Survival
Necrosis
P
Apoptosis
FAS Pathway
P
P
3x-P
3x-P
3x-P
DNA presentation
P
P
P
P
P
P
P
P
P
Ceramide hmdbid:HMDB04957
Extracellular
Cytoplasm
NucleusCHEBI:33252
Stress Induction of HSP regulation
Cut
Inhibitionchemical
Activate
Self-activation
Glutathione hmdbid:HMDB00125

GPML Annotator: Rn_Fatty_Acid_Beta_Oxidation_1_BiGCaT.gpml

Lipcuniprot
Lipeuniprot
Lipfuniprot
Pnpla2chemical
Gykuniprot
Gk2
Gpd2uniprot
Tpi1uniprot
Lpluniprot
Acas2uniprot
Acsl1uniprot
Acsl3uniprot
Acsl4uniprot
Acsl5uniprot
Acsl6uniprot
Cratuniprot
Cpt1auniprot
Chkbuniprot
Cpt2uniprot
Slc25a20uniprot
Cpt1buniprot
Acadvluniprot
Hadhauniprot
Hadhbuniprot
Hadhbuniprot
Hadhauniprot
Hadhauniprot
Hadhbuniprot
Hadhauniprot
Hadhauniprot
Hadhauniprot
Hadhauniprot
Hadhbuniprot
Hadhbuniprot
Hadhbuniprot
Hadhbuniprot
Acadluniprot
Acadluniprot
Echs1uniprot
Hadhscuniprot
Triacylglycerolchemical
Glycerol hmdbid:HMDB00131
Dihydroxyacetone Phosphate hmdbid:HMDB01473
Fatty AcidCHEBI:35366
Acyl-CoACHEBI:17984
Palmitoyl-CoA hmdbid:HMDB01338
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
L-Glycerol-3-Phosphatechemical
See Glycolysis MAPP
Trans-Hexadecanoyl-CoAchemical
(S)-3-Hydroxyhexadecanoyl-CoAchemical
3-Oxopalmitoyl-CoA hmdbid:HMDB06402
Myristoyl-CoACHEBI:15532
Acetyl-CoA hmdbid:HMDB01206uniprot
Trans-Tetradex-2-enoyl-CoAchemical
(S)-3-Hydroxytetradecanoyl-CoAchemical
Dxotetradecanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Lauroyl-CoA hmdbid:HMDB03571
2-trans-dodecenoyl-CoACHEBI:15471
(S)-3-Hydroxydodexanonyl-CoAchemical
3-Oxododexanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Decanoyl-CoACHEBI:28493
See Beta Oxidation 2 MAPP
Lipasesenzymeuniprot
See TCA Cycle MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP

GPML Annotator: Rn_Fatty_Acid_Beta_Oxidation_2_BiGCaT.gpml

Acadmuniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Acadmuniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Acadsuniprot
Echs1uniprot
Hadhscuniprot
Hadhauniprot
Hadhbuniprot
Decanoyl-CoACHEBI:28493
See Beta Oxidation 1 MAPP
Trans-Dec-2-enoyl-CoACHEBI:10723
(S)-3-Hydroxydecanoyl-CoAchemical
3-Oxocanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Octaoyl-CoAchemical
Trans-Oct-2-enoyl-CoACHEBI:27537
(S)-3-Hydroxyoctanoyl-CoAchemical
3-Oxo-octanoyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Hexanoyl-CoA hmdbid:HMDB02845
See Beta Oxidation Unsaturated MAPP
Trans-Hex-2-enoyl-CoACHEBI:28706
(S)-Hydrocyhexanoylchemical
3-Oxohexanoyl-CoACHEBI:27648
Acetyl-CoA hmdbid:HMDB01206uniprot
Butanoyl-CoA hmdbid:HMDB01088
See Beta Oxidation 3 MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP
See TCA Cycle MAPP

GPML Annotator: Rn_Fatty_Acid_Beta_Oxidation_3_BiGCaT.gpml

Echs1uniprot
Hadhscuniprot
Acat1uniprot
Hadhauniprot
Hadhbuniprot
Acadsuniprot
Gcdhuniprot
Dlduniprot
Butanoyl-CoA hmdbid:HMDB01088
See Beta Oxidation 2
Cronoyl-CoAchemical
(S)-3-Hydroxybutanoyl-CoA hmdbid:HMDB01166
Acetoacetyl-CoA hmdbid:HMDB01484
Glutaryl-CoA hmdbid:HMDB01339
Glutarate hmdbid:HMDB00661
Acetyl-CoA hmdbid:HMDB01206uniprot
See TCA Cycle

GPML Annotator: Rn_Fatty_Acid_Beta_Oxidation_Meta_BiGCaT.gpml

Lpluniprot
Gykuniprot
Gk2
Tpi1uniprot
Acsl1uniprot
Acsl3uniprot
Acsl4uniprot
Acsl6uniprot
Cratuniprot
Cpt1auniprot
Chkbuniprot
Cpt2uniprot
Slc25a20uniprot
Cpt1buniprot
Acadvluniprot
Hadhauniprot
Hadhbuniprot
Echs1uniprot
Hadhscuniprot
Hadhscuniprot
Hadhbuniprot
Acadsuniprot
Echs1uniprot
Acadsuniprot
Hadhscuniprot
Acat1uniprot
Hadhauniprot
Hadhbuniprot
Dlduniprot
Gcdhuniprot
Lipcuniprot
Lipeuniprot
Lipfuniprot
Pnpla2chemical
Acas2uniprot
Acadmuniprot
Echs1uniprot
Hadhauniprot
Gpd2uniprot
Acsl5uniprot
Acadluniprot
Beta Oxidation 1 MAPP
Beta Oxidation 2 MAPP
Beta Oxidation 3 MAPP
This MAPP is only present for statistical purpose,
to help evaluate all beta-oxidation MAPPS at once.
Omit the 3 individual sub-mapps from statistical
evaluation to prevent redundancy.

GPML Annotator: Rn_Fatty_Acid_Omega_Oxidation_BiGCaT.gpml

ADH1Buniprot
Adh1uniprot
Cyp2d6
Cyp2e1uniprot
CYP2A6uniprot
Cyp4a11uniprot
CYP3A4uniprot
Cyp1a2uniprot
Cyp1a1uniprot
Adh1cchemical
Adh4uniprot
Adh6uniprot
Adh7uniprot
Aldh1a1uniprot
Aldh2uniprot
CH3-(CH2)10-COO-
HO-CH-(CH2)10-COO-
HOC-(CH2)10-COO-
-OOC-(CH2)10-COO-
Beta Oxidation

GPML Annotator: Rn_Fatty_Acid_Synthesis_BiGCaT.gpml

Ech1uniprot
Echs1uniprot
Hadhscuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Fasnuniprot
Acas2uniprot
Acsl6uniprot
Acsl5uniprot
Acsl4uniprot
Acsl3uniprot
Acsl1uniprot
Scd1uniprot
Decr1uniprot
Pecruniprot
Mecruniprot
Acaa2uniprot
Pc
Aclyuniprot
Fasnuniprot
ACACAuniprot
Acacbchemical
Echdc3
Echdc2
Echdc1
Oxaloacetate hmdbid:HMDB00223
Pyruvate hmdbid:HMDB00243
TCA Cycle
Mitochondrion
Cytosol
Citrate hmdbid:HMDB00094
Acetyl-CoA hmdbid:HMDB01206uniprot
Acetyl-ACPchemical
Acetyl-synthase
Malonyl-CoA hmdbid:HMDB01175
Malonyl-ACPchemical
Acetoacetyl-ACPchemical
beta-hydroxybutyrylchemical
Crotonoyl-ACPchemical
Butyryl-ACPchemical
less than 6 iterations
Palmitoyl-ACPchemical
6 iterations
Palmitate hmdbid:HMDB00220
3-ketoacyl-CoAchemical
3-L-Hydroxyacyl-CoAchemical
trans-delta2-enoyl-CoAchemical
Acyl-CoA (n+2)
Long-Chain fatty acid
Fatty acyl CoA
See Triacylglyceride Synthesis MAPP

GPML Annotator: Rn_Focal_adhesion_KEGG.gpml

Thbs4uniprot
Tnruniprot
Vtnuniprot
Vwfuniprot
Lamc1uniprot
Col5a3
Egfuniprot
Figfuniprot
Hgfuniprot
Igf1uniprot
Pdgfauniprot
Pgfuniprot
Pelouniprot
Itga7uniprot
Itgamuniprot
Itgb1uniprot
Itgb2uniprot
Itgb4uniprot
Itgb6uniprot
Itgb7uniprot
Rap1auniprot
Rap1buniprot
Shc1uniprot
Shc3uniprot
Zyxuniprot
Cavuniprot
Cav3uniprot
Fynuniprot
Grb2uniprot
Srcuniprot
Ilkuniprot
Cav2uniprot
Actn1uniprot
Chad
Col2a1uniprot
Col3a1uniprot
Col4a1uniprot
Col4a4
Col5a1uniprot
Col1a1uniprot
Col1a2uniprot
Fn1uniprot
Ibspuniprot
Lamc2uniprot
Relnuniprot
Spp1uniprot
Blkuniprot
Egfruniprot
Erbb2uniprot
Fgruniprot
Flt1uniprot
Hckuniprot
Igf1runiprot
Met
Pdgfrauniprot
Pdgfrbuniprot
Srmsuniprot
Txkuniprot
Tesk2uniprot
Tnk2uniprot
Arafuniprot
Mapk7uniprot
Map2k5uniprot
Map2k6uniprot
Mapk12uniprot
Mapk1uniprot
Mapk6uniprot
Map2k2uniprot
Map2k3uniprot
Map2k1uniprot
Ptk2uniprot
Arhgap5uniprot
Rhobuniprot
Pxnuniprot
Capn1uniprot
Rhoauniprot
Pdpk1uniprot
Akt1uniprot
Akt2uniprot
Rock1uniprot
Rock2uniprot
Pip5k1cuniprot
Mylk2uniprot
Actbuniprot
Actg1uniprot
Gsk3buniprot
Pik3r1uniprot
Pik3r2uniprot
Pik3cbuniprot
Ptenuniprot
Rac1uniprot
Rac2uniprot
Pak1uniprot
Pak3uniprot
Pak2uniprot
Pdgfcchemical
Vegfauniprot
Vegfbuniprot
Vegfcuniprot
Bcar1uniprot
Crkuniprot
Rapgef1chemical
Cdc42uniprot
Bad
Bcl2uniprot
Birc2uniprot
Birc3uniprot
Birc4uniprot
Mapk9uniprot
Jununiprot
Ccnd1uniprot
Ccnd2uniprot
Col11a1uniprot
Col11a2uniprot
Col4a2uniprot
Col5a2
Col6a2uniprot
Compuniprot
Lama1uniprot
Lama2uniprot
Lama3uniprot
Lama4uniprot
Lama5uniprot
Lamb1uniprot
Lamb2uniprot
Lamb3uniprot
Thbs1uniprot
Thbs2uniprot
Thbs3uniprot
Tncuniprot
Col4a6
Tnxb
Tnnuniprot
Lamc3uniprot
LOC235580
Pdgfduniprot
Pdgfbuniprot
Kdruniprot
Ptk6uniprot
Styk1uniprot
Tnk1uniprot
Itgb8
Itgb5uniprot
Itgb3uniprot
Itgaeuniprot
Itgavuniprot
Itgaluniprot
Itgaduniprot
Itgaxuniprot
Itga8
Itga9
Itga10
Itga11uniprot
Itga2buniprot
Itga6uniprot
Itga5uniprot
Itga4uniprot
Itga3uniprot
Itga2uniprot
Farp2uniprot
Flnauniprot
Tln1uniprot
Pik3cauniprot
Pik3cduniprot
Pik3cguniprot
Pik3r5uniprot
Pik3r4uniprot
Mapk8uniprot
Ccnd3uniprot
Ctnnb1uniprot
Myl6uniprot
Diap1uniprot
Sos1uniprot
Crk1uniprot
Ha-Rasuniprot
Parvbuniprot
Vcluniprot
Vaspuniprot
Dock1uniprot
Raf1uniprot
Brafuniprot
Brafuniprot
Sepp1uniprot
Mapk4uniprot
Elk1uniprot
Rac3uniprot
Vav1uniprot
Akt3uniprot
Ppp1r12auniprot
Mylkuniprot
Pak4uniprot
Pak6
Pak7uniprot
Phosphatidylinositiolchemical
signaling system
Cell Motility
Integrin alpha
Integrin beta
ITGA
ITGB
ECM-receptor interactions
Cytokine-cytokine receptor interactions
Receptor Tyrosine Kinases
RAF
MEK hmdbid:HMDB00474
ERKenzymeuniprot
PKCenzymeuniprot
PIP2uniprot
PIP3uniprot
DNACHEBI:16991
Apoptosis
Cell Cycle
DNACHEBI:16991
Cell Proliferation
Wnt Signaling
FA turnover
Regulation of
actin cytoskeleton
Actinuniprot
Polymerizationchemical
Stress Fiber/FA
formation
Filopodia
Lamellipodia
formation
Cell Survival
+p
-p
+p
+p
+p
+p
+p
+p
+p
+p
+p
-p
+p
+p
-p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p
+p

GPML Annotator: Rn_G13_Signaling_Pathway.gpml


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RGD:727874
Rock1uniprot
Mybphuniprot
RGD:620885
Ppp1cbuniprot
Calm2uniprot
Arhgdiguniprot
Cdc42uniprot
Zfp29uniprot
Pik3cduniprot
Pak3uniprot
Arhgdibuniprot
Pik3r2uniprot
Diap1uniprot
Pip5k2auniprot
p140 Sra-1
Posh
Mapk10uniprot
Limk1uniprot
Rock2uniprot
Cituniprot
Pkn1uniprot
rhpn1uniprot
Tnk2uniprot
WAS
RGD:735144
Map3k4uniprot
Iqgap1uniprot
Rhoauniprot
Gna13uniprot
Pfn1uniprot
Pik3cauniprot
Cfl1uniprot
Cfl2uniprot
Arhgef1uniprot
Rac1uniprot
Rps6kb1uniprot
13
Activated Rho A
Cytokinesis
Actinuniprot
Membrane
Ruffling
Anti-Apoptotic
Actin Polymerization
Polymerizationchemical
Filopodia Formation
Actin Reorganization
Stress Fiber
Disappearance
Disassembly of Actin
G
Cell-Cell Adhesion
Contraction & Actin-Myosin
Interaction, Focal Adhesion
Stress Fiber Contraction

GPML Annotator: Rn_G1_to_S_cell_cycle_Reactome.gpml

CyclinDuniprot
Cdkuniprot
E2f5uniprot
CyclinEchemical
Cdk4uniprot
Cdk6uniprot
Ccnd1uniprot
Ccnd2uniprot
Ccnd3uniprot
CyclinDuniprot
Cdkuniprot
Cdk7uniprot
Ccnhuniprot
Mnat1uniprot
Ccna1uniprot
Cdc2auniprot
Ccnb1-rs1
Ccng2uniprot
Dp1uniprot
E2f2uniprot
E2f3uniprot
E2f4
E2f1uniprot
E2f1uniprot
Rb1uniprot
Tfdp2uniprot
Tfdp1uniprot
Rb1uniprot
E2f1uniprot
Rbl1uniprot
Rb1uniprot
E2f6uniprot
Pcnauniprot
LOC287961
Pole2uniprot
Pole
Pola2uniprot
Rpa1uniprot
Rpa2uniprot
Rpa3uniprot
Orc3luniprot
Orc2luniprot
Orc1luniprot
Orc6luniprot
Orc5luniprot
RGD:735212
Prim2uniprot
RGD:621380
Cdk7uniprot
Cdk6uniprot
Cdk4uniprot
Cdc2auniprot
RGD:1303018
Mcm6uniprot
Mcm5uniprot
Mcm4uniprot
Mcm3uniprot
Mcm2uniprot
Creb3l3
Creb3l4
Creb3uniprot
Creb3l1
RGD:1303317
Creb1uniprot
Cdc25auniprot
Cdkuniprot
CyclinEchemical
Ccne1uniprot
Ccne2uniprot
Cdk2uniprot
Wee1uniprot
Myt1uniprot
Cdkuniprot
Tp53uniprot
Mdm2uniprot
Atmuniprot
Tp53uniprot
Gadd45auniprot
Cdkn1auniprot
Cdkn1buniprot
Cdkn1cuniprot
Cdkn2duniprot
Cdkn2cuniprot
RGD:2323
Cdkn2buniprot
Mycuniprot
G1 Cyclin
Cyclin Dschemical
p
p
p
p
E2funiprot
Rb
dp1uniprot
Dependent Kinases
TTTCC/GCGC
Cell cycle DNA replication genes
G1 Phase
G1/S transition Phase
Dependent Kinases
Cyclin Eschemical
G1/S transition Cyclin
p
inactive
phosphorylation of proteins
involved in G1/S transition
DNA polymerasesuniprot
DNA replication
origen recognition
complex
p
G1/S Cell Cycle
Checkpoint
G2 Phase-M phase
u
u
u
Degredation
p
e
cakuniprot
b
b
e

GPML Annotator: Rn_G_Protein_Signaling.gpml


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Gnb1uniprot
Gnb2uniprot
Gnb5uniprot
Gng5uniprot
Gng7uniprot
Gng11uniprot
Gnasuniprot
Gnaluniprot
Gnaouniprot
Gnazuniprot
Gnai1uniprot
Gnai2uniprot
Gnai3uniprot
Gnaquniprot
Gna11uniprot
Gna15uniprot
Gna12uniprot
Arhgef1uniprot
Rhoauniprot
Slc9a1uniprot
Plcb3uniprot
Itpr1uniprot
Calm2uniprot
Kras2uniprot
Ppp3cauniprot
Ppp3cbuniprot
RGD:621616
Prkcauniprot
Prkcb1uniprot
Prkccuniprot
Prkcduniprot
Prkceuniprot
Hint1uniprot
Prkchuniprot
Prkcmuniprot
PRKCQuniprot
Prkczuniprot
Kcnj3uniprot
Adcy2uniprot
Adcy3uniprot
Adcy4uniprot
Adcy5uniprot
Adcy6uniprot
Adcy7uniprot
Adcy8uniprot
Prkar1auniprot
Prkar2auniprot
Prkar2buniprot
Prkacauniprot
Pde1auniprot
Pde1buniprot
Pde1cuniprot
Pde4duniprot
Pde7auniprot
Pde7buniprot
Pde8auniprot
Gng8uniprot
Gng2uniprot
Gng3uniprot
Gng4uniprot
Akap1uniprot
Akap2uniprot
Akap3uniprot
Akap4uniprot
Akap5uniprot
Akap6uniprot
RGD:1303071
Akap8uniprot
Akap9
Akap10uniprot
Akap11uniprot
Akap12
Akap13
Gnb3uniprot
Gnb4uniprot
Gng1uniprot
Adcy1uniprot
Adcy9uniprot
Hras1uniprot
Gna14uniprot
Nrasuniprot
Gna13uniprot
Prkar1buniprot
Prkacbuniprot
Prkacg
cAMP hmdbid:HMDB00058
IP3
Ca
++
s
G
G
G
q
i
12/13
DAGuniprot
Cytoskeletal
Changes
Cell
Response
Cell
Response
Transcription
Transcription
cAMP hmdbid:HMDB00058
Phosphatase 2B
Protein Kinase Auniprot
Phosphodiesteraseschemical
Adenylate Cyclasesuniprot
Protein Kinase Cuniprot
G
G
beta & gamma
AKAPs

GPML Annotator: Rn_Glucocorticoid_Mineralocorticoid_Metabolism.gpml

Cyp11a1uniprot
Steroid delta-Isomeraseenzymeuniprot
Corticosterone 18-Monooxy
3-Oxo-5b-Steroid Dh
3B-OH-delta-Steroid Dh
20b-Hydroxysteroid Dh
Steroid delta-Isomeraseenzymeuniprot
Cortisone beta-reductase
Hsd3b1uniprot
Hsd3b1uniprot
Hsd3b1uniprot
Hsd3buniprot
Cyp21a1uniprot
Cyp11b1uniprot
Cyp17a1uniprot
Cyp17a1uniprot
3B-OH-delta-Steroid Dh
RGD:708361
(R)20-hydroxysteroid Dh
RGD:708361
Hsd11b2uniprot
Hsd11b1uniprot
HO
O
HO
Cholesterol hmdbid:HMDB00067
From Cholersterol Biosynthesis
Progesterone hmdbid:HMDB01830
Signaling
Steroid HormoneCHEBI:26764
Pregnenolone hmdbid:HMDB00253
17-a-OH-Pregnenolonechemical
HO
=O
CH
OH
17-a-OH-Progesteronechemical
To Androgen Synthesis
and Metabolism
Substrates in
have strucutures shown
11-Deoxycorticosterone hmdbid:HMDB00016
C
=O
CH
C
=O
CH
C
O
=O
CH
C
3
3
3
2
OH
HO
OH
=O
CH
C
3
O
O
=O
CH
C
2
OH
HO
OH
11-Deoxycortisol hmdbid:HMDB00015
Cortisol hmdbid:HMDB00063
Cortisone hmdbid:HMDB02802
18-Hydroxy-Corticosteronechemical
O
=O
CH
C
2
OH
C
O
H
HO
Aldosterone hmdbid:HMDB00037
5b-Pregnan-18-alchemical
3a,11b,21-Trihydroxy-20-Oxo-chemical
5b-Pregnan-18-alchemical
11b, 21-Dihydroxy-3,20-
17a,21-Dihydroxy-5b-chemical
Pregnane-3,11,20-trionechemical
Urocortisone hmdbid:HMDB00903
Urocortisol hmdbid:HMDB00949
Cortisol hmdbid:HMDB00063
Cortolone hmdbid:HMDB03180
Pregnane 3,20-dione hmdbid:HMDB03759
11b,17a 21-Trihydroxy-5b
Glucuronides hmdbid:HMDB03141
3a-OH-5b-Pregnane-20-onechemical
5b-Pregnane-3,20-dione hmdbid:HMDB03759
HO
CH
C
3
H
H
Corticosterone hmdbid:HMDB01547
-OH
Pregnanediol hmdbid:HMDB04025
GlucocorticoidsCHEBI:24261
*
*
*
Progesterone Degradation
teal

GPML Annotator: Rn_Gluthation_Metabolism_KEGG.gpml

1.8.1.13
Anpepuniprot
Ggt1uniprot
Gpx3uniprot
1.8.4.4
1.8.4.1
2.8.1.3
1.8.5.1
1.8.4.3
1.8.3.3
1.11.1.12
1.8.4.7
1.8.4.2
1.5.4.1
G6pdxuniprot
1.1.1.43
Idh1uniprot
Gsruniprot
Gssuniprot
Gclcuniprot
Ggt1uniprot
3.4.11.4
Anpepuniprot
Oplahuniprot
2.3.2.4
Ggt1uniprot
2.3.2.4
2.3.1.80
6.3.1.8
3.5.1.78
Gpx1uniprot
Gpx2uniprot
Gpx4uniprot
Gstm3uniprot
Gsta5uniprot
Gsta2uniprot
Gstm2uniprot
Gstt1uniprot
Gstt2uniprot
Gstm4
Ggtla1uniprot
Ggtla1uniprot
Gclmuniprot
Ggtla1uniprot
Glutamate metabolism
Taurine and hypotaurine
Cyanoaminochemical
Cysteine metabolism
Amino acid metabolism
5-Oxoproline hmdbid:HMDB00267
L-Cysteine hmdbid:HMDB00574
L-Glutamate hmdbid:HMDB00148
Cysteinyl-Glycinechemical
(5-L-Glutamyl)
Glutathione hmdbid:HMDB00125
g-L-Glutamyl-L-cysteine hmdbid:HMDB01049
Bis-g-glutamylcystinechemical
Gluthatione
NADPH hmdbid:HMDB00221
NADP+ hmdbid:HMDB00217
RX
R-S-GlutathioneCHEBI:17021
Glutamylcysteinyl-chemical
L-Glutamate hmdbid:HMDB00148
R-S-Alanylchemical
Glycine hmdbid:HMDB00123
R-S-Alaninechemical
Acetyl-CoA hmdbid:HMDB01206uniprot
R-S-Mercapturonatechemical
(reduced)
glycylspermidinechemical
glycine hmdbid:HMDB00123
metabolism
acid metabolism
g-Glutamylchemical
Cycle
-L-amino acidchemical
glutathione recycling
Glutathione utilization
Glutathione hmdbid:HMDB00125
utilization
(oxidized)
L-Amino AcidCHEBI:15705
Glycine hmdbid:HMDB00123

GPML Annotator: Rn_Glycogen_Metabolism.gpml

Pygmuniprot
Pgm1uniprot
Phkg1uniprot
Phka1uniprot
Phkg2uniprot
Ppp2cauniprot
Ppp3cbuniprot
Ppp2r2auniprot
Ppp2r5b
Gys2uniprot
Gyg1uniprot
Gys1uniprot
Gys3uniprot
Branching Enzymeenzyme
Gsk3buniprot
Agluniprot
Ugp2uniprot
Glycogen hmdbid:HMDB00757
Glucose hmdbid:HMDB00122
Glucose-6-phosphate hmdbid:HMDB01401
Glucose-1-phosphate hmdbid:HMDB01586
UDP-Glucose +
Glycolysis
Glycogen (n-1) + Glucose-1-phosphate
Degradation
Synthesis
Phosphorylase Kinase B
cAMP hmdbid:HMDB00058
Ser/Thr Protein Phosphatase 2A
Glycogen hmdbid:HMDB00757
Glycogen (n+1)

GPML Annotator: Rn_Glycolysis_and_Gluconeogenesis.gpml

Hk1uniprot
Hk2uniprot
Hk3uniprot
Gckuniprot
G6pcuniprot
Gpiuniprot
Pfkmuniprot
Pfkluniprot
Pfkpuniprot
Fbp1uniprot
Aldoauniprot
Aldobuniprot
Aldocuniprot
Tpi1uniprot
Gapduniprot
Pgk1uniprot
Pgk1uniprot
Pgam2uniprot
Pgam1uniprot
Eno1uniprot
Eno3uniprot
Eno2uniprot
Pck1uniprot
Pkm2uniprot
Pklruniprot
Pkm2uniprot
Ldhauniprot
Ldhbuniprot
Ldhcuniprot
Got1uniprot
Mdh1uniprot
Pc
Pdha1uniprot
Pdha2uniprot
Pdhbuniprot
Dlatuniprot
Got2uniprot
Mor1uniprot
Glucose hmdbid:HMDB00122
3-Phosphoglycerate hmdbid:HMDB00807
2-Phosphoglyceratechemical
Pyruvate hmdbid:HMDB00243
LactateCHEBI:24996
Fructose-1,6-bisphosphate hmdbid:HMDB01058
Fructose-6-phosphate hmdbid:HMDB00124
Glucose-6-phosphate hmdbid:HMDB01401
1,3-Bisphosphoglycerate hmdbid:HMDB01270
Phosphoenolpyruvate hmdbid:HMDB00263
Dihydroxyacetone hmdbid:HMDB01882
Phosphate hmdbid:HMDB01429
3-phosphatechemical
Glyceraldehyde-chemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Oxaloacetate hmdbid:HMDB00223
Aspartate hmdbid:HMDB00191
Oxaloacetate hmdbid:HMDB00223
Malate hmdbid:HMDB03256
Malate hmdbid:HMDB03256
Pyruvate hmdbid:HMDB00243
Cycle
Aspartate hmdbid:HMDB00191
Glycolysis
Gluconeogenesischemical
Mitochondrion
Cytosol
TCAuniprot

GPML Annotator: Rn_GPCRDB_Class_A_Rhodopsin-like.gpml


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Chrm1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Adra1auniprot
Adra1buniprot
Adra1duniprot
Adra2buniprot
Adra2cuniprot
Adra2auniprot
Adrb2uniprot
Adrb3uniprot
Drd3uniprot
Drd4uniprot
C5r1uniprot
C3ar1uniprot
Bdkrb1uniprot
Bdkrb2uniprot
Grpruniprot
Nmbruniprot
Agtr1uniprot
Agtr1auniprot
Htr7uniprot
Htr6uniprot
Htr5buniprot
Htr5auniprot
Htr4uniprot
Htr2auniprot
Agtrl1uniprot
Il8rbuniprot
Ccr3uniprot
Cxcr4uniprot
Ccr5uniprot
Ccbp2uniprot
Cxcr4uniprot
Ccr5uniprot
Cx3cr1uniprot
Cckaruniprot
Cckaruniprot
Cckbruniprot
Sstr2uniprot
Sstr1uniprot
Oprluniprot
Oprk1uniprot
Oprd1uniprot
Ntsr2uniprot
Ppyr1uniprot
Npy1runiprot
Mc5runiprot
Mc3runiprot
Ednrbuniprot
Sstr3uniprot
Sstr5uniprot
Sstr4uniprot
Sstr5uniprot
Avpr1auniprot
Avpr1buniprot
Oxtruniprot
Galr1uniprot
Galr3uniprot
Galr2uniprot
F2rl1uniprot
Cmklr1uniprot
Gabbr1uniprot
Opn1swuniprot
Opn1mwuniprot
Rhouniprot
Tshruniprot
Lhcgruniprot
Fshruniprot
Ptger1uniprot
Ptger2uniprot
Ptger3uniprot
Ptger4uniprot
Ptgfruniprot
Tbxa2runiprot
Adora3uniprot
Adora2buniprot
Adora2auniprot
P2ry1uniprot
Cmkor1uniprot
Mas1uniprot
GPR87uniprot
Mtnr1auniprot
Gpr50uniprot
Trhruniprot
RGD:621262
Ptafruniprot
Cnr1uniprot
Cnr2uniprot
Adrb1uniprot
Agtr2uniprot
Ccr2uniprot
Gpcr12uniprot
Gpr19uniprot
Gpr27uniprot
Hrh1uniprot
Hrh2uniprot
Htr1auniprot
Htr1buniprot
Htr1duniprot
Htr1funiprot
Htr2cuniprot
Htr2buniprot
P2ry2uniprot
Brs3uniprot
FPR-RS2
FPR-RS1
Fpr1uniprot
Fprl1uniprot
Fpr-rs4
Fpr-rs3
Ccr1uniprot
Ccr6uniprot
Ccr8uniprot
Ccr9uniprot
Ccr1l1uniprot
Ccrl2uniprot
Cxcr3uniprot
Mc1runiprot
Mc2runiprot
Npy2runiprot
Npy5runiprot
Gpr83uniprot
Oprm1uniprot
F2runiprot
Avpr2uniprot
NTSR1uniprot
NPY6Runiprot
F2rl3uniprot
F2rl2uniprot
Gpr37uniprot
Gpr33uniprot
Gpr44uniprot
Gpr66uniprot
Rgruniprot
Opn4uniprot
Rrhuniprot
OPN3uniprot
Ptgdruniprot
PTGIRuniprot
P2ry4uniprot
Gpr35uniprot
Ltb4runiprot
Sucnr1uniprot
P2y12uniprot
GPR86uniprot
Q9ESG6
Q9D5Q2
TCP10C
Gpr3uniprot
Gpr63uniprot
Gpr45uniprot
Cysltr1uniprot
Gpr65uniprot
Cask
RGD:727952
AmineCHEBI:32952
Acetylcholine (muscarinic)
Adrenoceptors
Alpha Adrenoceptors
Beta Adrenoceptors
Dopamine hmdbid:HMDB00073
Histamine hmdbid:HMDB00870
PeptideCHEBI:16670 CHEBI:16670
Angiotensinuniprot
Bombesinuniprot
Bradykininuniprot
C5a anaphylatoxinuniprot
Fmet-leu-phe
APJ like
Interleukin-8uniprot
Chemokine
C-C Chemokine
C-X-C Chemokine
CCKuniprot
Melanocortinchemical
Neuropeptide Yuniprot
Neurotensinuniprot
Opioid
Somatostatin
Thrombinenzymeuniprot
Vasopressin-like
Galaninuniprot
Proteinase activated
GPR37 / endothelin B-like
Chemokine receptor-like
Neuromedin U
Hormone protein
Follicle stimulating hormone
Lutropin-choriogonadotropic hormone
Thyrotropin
(Rhod)opsin
Rhodopsin Vertebrate
Rhodopsin Other
Olfactory
ProstanoidCHEBI:26347
ProstaglandinCHEBI:26333
Prostacyclin hmdbid:HMDB01335
Thromboxane hmdbid:HMDB03208
Nucleotide-like
Adenosine hmdbid:HMDB00050
Purinoceptors
Cannabis
Platelet activating factor
Melatonin hmdbid:HMDB01389
Class A Orphan/other
Thyrotropin-releasing hormone & Secretagogue
Endothelin

GPML Annotator: Rn_GPCRDB_Class_B_Secretin-like.gpml

Calcrluniprot
Calcruniprot
Crhr2uniprot
Crhr1uniprot
Gcgruniprot
Glp1runiprot
Ghrhruniprot
Pthr1uniprot
Vipr1uniprot
Vipr2uniprot
Adcyap1r1uniprot
Cd97uniprot
Emr1uniprot
Calcitoninuniprot
Corticotropin releasing factoruniprot
Glucagonuniprot
Growth hormone-releasing hormoneuniprot
Parathyroid hormone
PACAPuniprot
Vasoactive intestinal polypeptideuniprot
EMR1uniprot

GPML Annotator: Rn_GPCRDB_Class_C_Metabotropic_glutamate_pheromone.gpml

Grm3uniprot
Grm8uniprot
Grm1uniprot
Casruniprot
RGD:735022
RGD:708515
RGD:727942
RGD:708398
Gabbr1uniprot
Sel1huniprot
V2R14
GPRC5Duniprot
Metabotropic glutamatechemical
Extracellular calcium-sensing
Putative pheromone Receptors
GABA-B
Orphan GPRC5

GPML Annotator: Rn_GPCRDB_Other.gpml


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Adora1uniprot
Ednrauniprot
Mc4runiprot
Grm1uniprot
Tacr3uniprot
Olr226uniprot
Olr1361uniprot
Olr287uniprot
Olr226uniprot
Olr226uniprot
Fzd2uniprot
Fzd2uniprot
OLFR60
OLFR59
OLFR58
OLFR56
OLFR57
OLFR55
OLFR54
OLFR53
OLFR52
OLFR51
OLFR50
OLFR48
OLFR47
OLFR46
OLFR45
OLFR44
OLFR43
OLFR42
Vipr1uniprot
Smouniprot
Adora3uniprot
Drd1auniprot
GPR37L1uniprot
Adrb2uniprot
Adora3uniprot
Pcdha4uniprot
Edg1uniprot
GPR37L1uniprot
Fzd1uniprot
Adrb1uniprot
Drd5uniprot
Gabbr1uniprot
Edg5uniprot
Oprk1uniprot
Edg5uniprot
Gpr7uniprot
Ccr7uniprot
Gpr2uniprot
Xcr1uniprot
OLFR4-3
OA1uniprot
Drd2uniprot
Gpr56uniprot
CELSR1uniprot
Celsr2uniprot
Cysltr1uniprot
Gpr88uniprot
DFY
Grca
Mrgprhuniprot
Gpr84uniprot
Ltb4r2uniprot
Gpr73uniprot
Gpr132uniprot
GPCR14
OLFR4
OLFR4
OLFR4
OLFR3
OLFR7
OLFR13
OLFR12
OLFR11
OLFR10
Sstr5uniprot
Fzd9uniprot
GPRC2A-RS3
GPRC2A-RS2
CASR-RS1
V2R7
V2R6
V2R5
V2R3
V1rb6uniprot
V1rb7uniprot
V1rb9uniprot
V1RC8
V1rc5
V1RC9
V1RC7
V1rc6
V1RC3
V1rc1
V1rc2
V1RC4
V1RB3
V1RB1
V1RB8
V1RB4
V1R5
V1RA1
V1RA3
V1RA4
V1RA5
V1RA6
V1ra8uniprot
V1RA9
V1RA1
V1ra7uniprot
V1RA2
Olr1413
Olr728
Olr1398
OLFR28
OLFR19
Olr1307
OLFR33
OLFR18
OLFR22
OLFR23
OLFR24
OLFR29
OLFR31
OLFR20
OLFR27
Olr737
HTR1DAuniprot
HTR1DBuniprot
Edg8uniprot
Tas1r1uniprot
Cask
Rrhuniprot
Gpr83uniprot
OLFR56
Oprluniprot
OLFR46
RSVP
D1DR
Fzd9uniprot
Adora1uniprot
OLFR89
OLFR62
OLFR61
FZD7uniprot
Cd97uniprot
Celsr2uniprot
Smoothened
Vomeronasal receptors (V1R & V3R)
Putative / unclassified GPCRs
Other Chemokine Receptors
Fragments

GPML Annotator: Rn_Hedgehog_Netpath_10.gpml

Ptch1uniprot
Shh
Cdc2auniprot
Ptch1uniprot
Ptch1uniprot
Dhhuniprot
Smouniprot
Ihhuniprot
Ptch1uniprot
Ptch1uniprot
Ihhuniprot
GLI3uniprot
SKIuniprot
Sufuuniprot
Sap18uniprot
Sin3auniprot
Gli1uniprot
GAS1uniprot
Crebbpuniprot
Dyrk1auniprot
Gli2chemical
Stk36uniprot
Sufuuniprot
Cdc2auniprot
Ccnb1uniprot
Gli1uniprot
Gli2chemical
GLI3uniprot
Ptch1uniprot
Sufuuniprot
Rab23uniprot
Rab23uniprot
Ccnb1uniprot
Smouniprot
Igf2uniprot
Dhhuniprot
Shh
Shh
Dhhuniprot
Ihhuniprot
Shh
RGD1564108
RGD1564108
RGD1564108
Ptch1uniprot
Translocation
Plasma membrane
Cytoplasm
Endosome
NucleusCHEBI:33252
CY->NU
CY->NU
CY->NU
CY->NU
PM->EN
CY->NU
CY->PM
PM->EN
Molecular Association
Ligand
Receptor
Molecule in the pathway
Gene Symbol
Activationchemical
D
Inhibitionchemical
Accession Number: NetPath_10; cellmap:10
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
PM
CY
EN
NU
D
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Methylationchemical
Demethylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Extracellular
EC
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Palmitoylationchemical
Glycosylation

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GPML Annotator: Rn_HSP70_and_Apoptosis.gpml

Map3k1uniprot
Casp8uniprot
Casp3uniprot
Fadduniprot
Bid
Casp2uniprot
Casp6uniprot
Casp7uniprot
Hspa1auniprot
RGD:619831
Casp8uniprot
Pdcd8uniprot
Cycsuniprot
Apaf1uniprot
Casp9
Cycsuniprot
Nfkb1uniprot
Hspa1auniprot
Hspa1auniprot
Fadduniprot
Tnfrsf1auniprot
Mapk10uniprot
Ripk1uniprot
TNF-alphauniprot
STRESS
Mitochondria
APOPTOSIS
CELL SURVIVAL
Ik alpha
degradation of
Activationchemical
of proteins
degradation
(activation of NFkB)
Inhibitionchemical
Apoptosome
Inhibitionchemical
NF-kB
FAS-Ligand
Proteasomeenzyme
pathway
Inhibitionchemical
Inhibitionchemical

GPML Annotator: Rn_Hypertrophy_model.gpml

Tcf8uniprot
Myoguniprot
Il1auniprot
?
Eif4euniprot
Atf3uniprot
Ifnguniprot
Dusp14uniprot
Nr4a3uniprot
MINORuniprot
LOC360950
Junduniprot
Il1r1uniprot
Cyr61uniprot
Gdf8uniprot
Eif4ebp1uniprot
Vegfauniprot
Il18uniprot
Adam10uniprot
Ankrd1uniprot
Dtruniprot
Ifrd1uniprot
-634
-698
+1
?
angiogenesis
protein synthesis
proliferative response
+500
+296
correlate to all 4 MINOR probes
HB-EGF correlated

GPML Annotator: Rn_Id_NetPath_5.gpml

Id1uniprot
Id2uniprot
Id3uniprot
Id4uniprot
Id2uniprot
Rb1uniprot
Rbl2uniprot
RBL1uniprot
Tcfe2auniprot
Myod1uniprot
CDK2uniprot
Ccna2uniprot
Ccne1uniprot
Elk1uniprot
Elk4uniprot
Elk3uniprot
Psmd4uniprot
Hes1uniprot
PAX5uniprot
Pax2uniprot
Pax8uniprot
Myf5uniprot
Myf6uniprot
Myoguniprot
Tcf12uniprot
Srebf1uniprot
Mscuniprot
Mndachemical
Bmp2uniprot
Bmpr2uniprot
Vegfauniprot
Flt1uniprot
KDR hmdbid:HMDB06226uniprot
Smad1uniprot
Smad4uniprot
Smad5uniprot
Atf3uniprot
Smad3uniprot
Tgifuniprot
Acvrl1uniprot
Smad4uniprot
Smad5uniprot
Smad1uniprot
TCR
LCKuniprot
RASuniprot
MAPKenzymeuniprot
ERKenzymeuniprot
Igf1runiprot
Igf1uniprot
Irs1uniprot
PI3Kuniprot
Ctnnb1uniprot
Tertuniprot
Nfkb1uniprot
Relauniprot
Bmp6uniprot
Cd40lguniprot
Atf3uniprot
Smad3uniprot
Egfuniprot
TCF7L2uniprot
Gene Symbol
Ngfbuniprot
ID Gene Regulation
D
D
D
D
D
Control
Ligand
Receptor
Molecule in the Pathway
P
P
P
CY -> NU
Cytoplasm
Extracellular
Proteins in a complex interaction
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Activationchemical
Translocation
CY
EC
Accession Number: NetPath_5; cellmap:5
Enzyme complex
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Inhibitionchemical
Recruitment
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
Mitochondria
MT
NucleusCHEBI:33252
NU
PM
Plasma membrane

GPML Annotator: Rn_IL-1_NetPath_13.gpml

Il1buniprot
Il1rnuniprot
Il1rapuniprot
Il1r1uniprot
Il1auniprot
Il1buniprot
Il1rnuniprot
Il1r2uniprot
Il1r2uniprot
Il1rapuniprot
Il1r2uniprot
Myd88uniprot
Il1r1uniprot
Il1r1uniprot
IRAK4uniprot
IRAK3uniprot
TOLLIPuniprot
PELI1uniprot
MAP3K7uniprot
MAP3K7IP2uniprot
MAP3K7IP2uniprot
MAP3K7uniprot
MAP3K7IP2uniprot
MAP3K7IP1uniprot
MAP3K7uniprot
MAPK8uniprot
MAP3K14uniprot
CHUKenzymeuniprot
CHUKenzymeuniprot
IKBKAPuniprot
SQSTM1uniprot
PRKCZuniprot
Ptpns1uniprot
PTPN11uniprot
TOLLIPuniprot
Il1auniprot
Irak2chemical
IRAK4uniprot
PELI1uniprot
MAP3K14uniprot
Il1auniprot
Il1buniprot
CAPN1uniprot
CAPNS1uniprot
CASP1uniprot
MAP3K7uniprot
MAP3K7IP2uniprot
Ptpns1uniprot
MAPK1uniprot
AKT1uniprot
MAP3K7IP2uniprot
MAP3K7IP1uniprot
MAP3K7uniprot
MAP3K7IP2uniprot
Traf6uniprot
MAP3K7uniprot
MAP3K7IP1uniprot
NFKBIAuniprot
NFKBIBuniprot
Gene Symbol
Il1auniprot
Il1buniprot
PTPN11uniprot
MAPK1uniprot
MAP2K1uniprot
MAPK3uniprot
NFKBIAuniprot
RELAuniprot
RELAuniprot
NFKB1uniprot
PLCG1uniprot
Irak1uniprot
Irak1uniprot
Traf6uniprot
Traf6uniprot
Traf6uniprot
Irak1uniprot
Irak1uniprot
Irak4uniprot
Traf6uniprot
Traf6uniprot
Irak1uniprot
Irak1uniprot
D
CY -> NU
PM -> CY
PM -> CY
D
D
Accession Number: NetPath_13
D
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Autophosphorylationchemical
Dephosphorylationchemical
Palmitoylationchemical
Ubiquitination
Proteolytic cleavage
Glycosylation
Acetylationchemical
Sumoylationchemical
Methylationchemical
Recruitment
Activationchemical
Inhibitionchemical
Translocation
PM
Plasma membrane
CY
Cytoplasm
NU
NucleusCHEBI:33252
EN
Endosome
GO
Golgi apparatus
MT
Mitochondria
CY->EX
CY->EX
Deubiquitination
Deacetylationchemical
Desumoylation
Demethylationchemical
EC
Extracellular
D
D
D
CY -> NU
CY -> NU
Control

GPML Annotator: Rn_IL-2_NetPath_14.gpml

Il2rguniprot
IL2RBuniprot
Il2rauniprot
Il2uniprot
Il2uniprot
Il2uniprot
Jak1uniprot
Jak3uniprot
Jak2uniprot
Pik3r1uniprot
Pik3r2uniprot
Ptpn6uniprot
Mapk1uniprot
Mapk3uniprot
Gab2uniprot
Sykuniprot
Irs1uniprot
Irs2uniprot
Stam2uniprot
RGD1564499
Socs3uniprot
Plcb1uniprot
Rps6kb1uniprot
PIK3CAuniprot
Pik3cbuniprot
Pik3cduniprot
Pik3cguniprot
Fynuniprot
Akt1uniprot
Foxo3a
Tertuniprot
Lyn
Ptpn11uniprot
Shc1uniprot
Raf1uniprot
Grb2uniprot
Ptk2buniprot
Cd53uniprot
Icam1uniprot
Sos1uniprot
Socs1uniprot
Cishuniprot
Gnb2l1uniprot
Crkluniprot
RGD1561386
SHBuniprot
Crkuniprot
Nmiuniprot
Ets1uniprot
Nr3c1uniprot
Prkczuniprot
Itm2buniprot
Bcl2uniprot
IFNA1uniprot
Frap1uniprot
Hspcauniprot
MGC112775
Eif4euniprot
Creb1uniprot
Map2k1uniprot
Map2k2uniprot
Vav1uniprot
Stat5auniprot
Stat5buniprot
Mapk1uniprot
Mapk3uniprot
Nfkb1uniprot
Relauniprot
Ybx1uniprot
Nfkb1uniprot
Relauniprot
Ybx1uniprot
Tertuniprot
Akt1uniprot
Raf1uniprot
Krasuniprot
Mapk8uniprot
Mapk14uniprot
Mapkapk2uniprot
Mapk9uniprot
Chukuniprot
Eif3s9uniprot
Akt1uniprot
Stat3uniprot
Stat5auniprot
Stat5buniprot
Stat1uniprot
Crkuniprot
Il2uniprot
Il2uniprot
Lckuniprot
Ets2uniprot
Molecular association
Translocation
Autophosphorylationchemical
Phosphorylationchemical
Inhibitionchemical
Activationchemical
D
D
D
D
D
D
D
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> NU
CY -> PM
CY -> NU
PM -> CY
D
D
Ligand
Receptor
Molecule in the pathway
D
D
D
Gene Symbol
Accession Number: NetPath_14
Proteins in a complex interaction
Enzyme complex
Reactions through unknown mechanisms/molecules
Plasma membrane
NucleusCHEBI:33252
(Protein-protein interaction)
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitolyationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Desumoylation
Ubiquitination
Deubiquitination
Sumoylationchemical
Recruitment
Control
CY
EC
EN
ER
GO
MT
MT
PM
Cytoplasm
Extracellular
Endoplasmic reticulum
Endosome
Golgi apparatus
Mitochondrion
NU
NU
NucleusCHEBI:33252

GPML Annotator: Rn_IL-3_NetPath_15.gpml

IL3uniprot
Il3rauniprot
IL3uniprot
IL3uniprot
Csf2rb1uniprot
Il3rauniprot
Csf2rb1uniprot
PIK3CAuniprot
Pik3cduniprot
Hrasuniprot
Tecuniprot
Vav1uniprot
Jak1uniprot
Jak2uniprot
Ptpn6uniprot
Ptpn11uniprot
Lyn
Sykuniprot
Hckuniprot
Fynuniprot
Stat1uniprot
Stat5auniprot
Stat6uniprot
Stat5buniprot
Stat3uniprot
Rarauniprot
Rxrauniprot
Pik3r1uniprot
Pik3r2uniprot
Akt1uniprot
Ywhazuniprot
RGD1564385
Cishuniprot
Gnb2l1uniprot
Prkcb1uniprot
Shc1uniprot
Ywhaquniprot
Ywhabuniprot
Gab2uniprot
Grb2uniprot
Sos1uniprot
Inpp5d
Gab1uniprot
Rapgef1chemical
Crkluniprot
RGD1561386
Crkuniprot
PILRBuniprot
Bad
Bcl2l1uniprot
Bcl2uniprot
Baxuniprot
Bcl2l11uniprot
Ppp2cauniprot
Creb1uniprot
Ptk2uniprot
Pxnuniprot
Srcuniprot
Socs2uniprot
Socs3uniprot
Dnm1uniprot
Vcluniprot
Raf1uniprot
Map2k1uniprot
Rac1uniprot
Rac2uniprot
Mapk8uniprot
Mapk1uniprot
Mapk3uniprot
Gata1uniprot
Gata2uniprot
Prkacauniprot
Pak1uniprot
Shc1uniprot
Prkcauniprot
Prkcauniprot
Nfkb1uniprot
Nfkb1uniprot
Slc2a1uniprot
Slc2a1uniprot
Bad
Mapk3uniprot
TYK2uniprot
Gsk3auniprot
Gsk3buniprot
Csenuniprot
MAPK7uniprot
Foxo1auniprot
Hspb1uniprot
Mapk14uniprot
Atf2uniprot
Atf1uniprot
Mrasuniprot
Krasuniprot
RPS6KB2uniprot
Rap1auniprot
BIRC5uniprot
Mapkapk2uniprot
Sfpi1uniprot
Cdc42uniprot
RGD1565643
Tnfrsf1buniprot
Id1uniprot
Selpuniprot
Fcer2auniprot
Mapk9uniprot
Chek1uniprot
Matkuniprot
Mmp2uniprot
Mmp9uniprot
Gene Symbol
IL3uniprot
Lckuniprot
Molecular Association
Cytoplasm
NucleusCHEBI:33252
Autophosphorylationchemical
Phosphorylationchemical
D
CY->PM
CY->NU
CY->PM
CY->NU
D
D
Activationchemical
Plasma membrane
CY->PM
D
MT->CY
D
D
D
D
D
D
D
D
D
D
D
D
D
D
D
Mitochondrion
Accession Number: NetPath_15
Molecule in the pathway
Receptor
Ligand
Proteins in a complex interaction
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
Translocation
Inhibitionchemical
PM
CY
NU
MT
Enzyme complex
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Dephosphorylationchemical
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
Deacetylationchemical
Acetylationchemical
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO
MA
MA
MA
MA
MA
MA

GPML Annotator: Rn_IL-4_NetPath_16.gpml

Il2rguniprot
Il4rauniprot
Il4uniprot
RGD1564385
Inpp5d
Ptpn6uniprot
Ptpn11uniprot
Jak1uniprot
Irs1uniprot
Il4uniprot
Il4rauniprot
Il13ra1uniprot
Jak2uniprot
TYK2uniprot
Jak1uniprot
Pik3r1uniprot
Pik3r2uniprot
Prkczuniprot
Stat6uniprot
Pawruniprot
Irs2uniprot
Jak3uniprot
Grb2uniprot
Sos1uniprot
Cxcr4uniprot
Adrbk2uniprot
Ptk2uniprot
Shc1uniprot
Plcg1uniprot
HIST2H3Cuniprot
Crebbpuniprot
Ep300
Mapk14uniprot
MAPK11uniprot
Atf2uniprot
RGD1561386
Stat6uniprot
Stat6uniprot
Stat5auniprot
RGD1564914
Stat6uniprot
Mapk1uniprot
Mapk3uniprot
Mapk14uniprot
Dok2uniprot
Rasa1uniprot
Nfkb1uniprot
Relauniprot
Bad
NCF1uniprot
PIK3CAuniprot
Pik3cduniprot
Bcl2l1uniprot
Socs1uniprot
Rps6kb1uniprot
Hmga1uniprot
Ets1uniprot
Socs3uniprot
Stat1uniprot
Srcuniprot
Elk1uniprot
Akt1uniprot
Prkcduniprot
Prkcnuniprot
Prkciuniprot
Prkcduniprot
Prkcnuniprot
Prkciuniprot
Prkczuniprot
Nfkb1uniprot
Sfpi1uniprot
Lck_mapped
Fynuniprot
RGD1564499
Stat6uniprot
Jak2uniprot
Gene Symbol
Translocation
Cytoplasm
Plasma membrane
NucleusCHEBI:33252
CY -> NU
D
D
D
D
CY -> PM
CY -> PM
CY -> PM
CY -> PM
CY -> NU
D
D
D
Ligand
Receptor
Molecule in the pathway
D
Inhibitionchemical
D
Accession Number: NetPath_16
Proteins in a complex interaction
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Dephosphorylationchemical
Activationchemical
(Protein-protein interaction)
Acetylationchemical
PM
CY
NU
Enzyme complex
Autophosphorylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
EC
Extracellular
EN
Endosome
Endoplasmic reticulum
ER
Golgi apparatus
GO
Mitochondrion
MT
Control

GPML Annotator: Rn_IL-5_NetPath_17.gpml

Il5uniprot
Il5uniprot
Il5rauniprot
Csf2rb1uniprot
Shc1uniprot
Ptpn11uniprot
Csf2rb1uniprot
Dnm2uniprot
Prkcb1uniprot
Mapk1uniprot
Mapk3uniprot
SHC2uniprot
Mapk14uniprot
Nfkbiauniprot
Ptk2buniprot
Pik3cguniprot
Map2k2uniprot
Pik3r1uniprot
Pik3r2uniprot
Ptpn6uniprot
Nfkb1uniprot
Mapk9uniprot
Grb2uniprot
Lyn
Unc119uniprot
Crkluniprot
Raf1uniprot
Krasuniprot
Sykuniprot
Sdcbpuniprot
Sox4uniprot
Socs1uniprot
Ywhazuniprot
Hckuniprot
Akt1uniprot
Rps6ka1uniprot
Foxo3a
Nfkb1uniprot
Gsk3auniprot
Pla2g4auniprot
Vav1uniprot
Hcls1uniprot
RGD1561386
Apsuniprot
Jununiprot
Btkuniprot
Gsk3buniprot
Atf2uniprot
Elk1uniprot
IL2RBuniprot
Stat5auniprot
Stat5buniprot
Crkluniprot
Alox5uniprot
Alox5uniprot
Baxuniprot
Baxuniprot
Prkcduniprot
Prkcduniprot
Il5rauniprot
Csf2rb1uniprot
Ctnnb1uniprot
Ctnnb1uniprot
Hrasuniprot
Rap1ga1
Ccnd3uniprot
Cdkn1buniprot
Rapgef1chemical
Alox5apuniprot
Rac1uniprot
Icam1uniprot
ICAM3uniprot
Itgb2uniprot
Itgamuniprot
Pim1uniprot
Jak1uniprot
Jak2uniprot
Stat3uniprot
Stat1uniprot
Stat5buniprot
Stat5auniprot
(Protein-protein interaction)
Translocation
Autophosphorylationchemical
Recruitment
Inhibitionchemical
Activationchemical
Proteins in a complex interaction
Enzyme complex
Cytoplasm
NucleusCHEBI:33252
Plasma membrane
Control
Ubiquitination
Mitochondria
D
D
D
D
D
D
D
D
D
CY->NU
CY->NU
CY->NU
CY->MT
CY->PM
PM->NU
PM->NU
PM->NU
D
D
D
D
D
Ligand
Receptor
Molecule in the pathway
Gene Symbol
D
Accession Number: NetPath_17
Molecular association
D
Reaction through unknown mechanisms/molecules
PM
CY
NU
MT
D
D
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Deubiquitination
Extracellular
EC
Endosome
EN
Endoplasmic reticulum
ER
Golgi apparatus
GO

GPML Annotator: Rn_IL-6_NetPath_18.gpml

Il6uniprot
Il6rauniprot
Il6rauniprot
Il6stuniprot
Il6stuniprot
RGD1564385
Tecuniprot
Btkuniprot
Jak2uniprot
Ptpn11uniprot
Jak1uniprot
TYK2uniprot
Shc1uniprot
Grb2uniprot
Stat3uniprot
Sos1uniprot
Vav1uniprot
Mapk1uniprot
Gab1uniprot
Pik3r1uniprot
Pik3r2uniprot
Stat1uniprot
Stat1uniprot
Stat1uniprot
Stat3uniprot
Stat1uniprot
Stat3uniprot
Stat3uniprot
Stat3uniprot
Mapk14uniprot
Mapk14uniprot
Sgkuniprot
Sgkuniprot
Nfkb1uniprot
Nfkb1uniprot
RGD1561602
Hrasuniprot
Ncoa1uniprot
Crebbpuniprot
Rac1uniprot
Cdk9uniprot
Daxxuniprot
Ar
Hdac1uniprot
Prkcduniprot
Ptk2buniprot
Gab2uniprot
Map2k4uniprot
Hspcauniprot
Socs3uniprot
Fosuniprot
Jununiprot
Tcf1uniprot
Cebpbuniprot
Erbb2uniprot
Erbb3uniprot
Hckuniprot
Lyn
Cebpbuniprot
Raf1uniprot
Casp3uniprot
Casp9
Ppp2cauniprot
Ppp2cbuniprot
Ppp2r1auniprot
Ppp2r1buniprot
Ppp2r2auniprot
Ppp2r2buniprot
Ppp2r2cuniprot
Ppp2r3auniprot
PPP2R3Buniprot
Ppp2r4uniprot
Ppp2r5auniprot
Ppp2r5b
PPP2R5Cuniprot
Ppp2r5d
Ppp2r5euniprot
Ep300
Map2k6uniprot
Cdk5uniprot
MAPTuniprot
Rps6ka2uniprot
Mapk3uniprot
Fgruniprot
Plcg1uniprot
Map3k4uniprot
Rb1uniprot
Akt1uniprot
Bad
Gsk3buniprot
Foxo1auniprot
Map2k1uniprot
Map2k2uniprot
Eif4euniprot
Eif2auniprot
Mapk8uniprot
Ptk2uniprot
Pxnuniprot
Foxo3a
RGD1561201
Inpp5d
Inppl1
Rps6kb1uniprot
Eif4ebp1uniprot
RGD1565643
Fynuniprot
Tnfrsf5uniprot
Stat3uniprot
Stat5auniprot
Stat5buniprot
Stat3uniprot
Stat3uniprot
Mapkapk2uniprot
Map3k7uniprot
Map3k7uniprot
Hspb1uniprot
Il6uniprot
Cdk5r1uniprot
Autophosphorylationchemical
Early Endosomes
Inhibitionchemical
Translocation
Cytoplasm
CY->NU
Phosphorylationchemical
Dephosphorylationchemical
Acetylationchemical
CY->NU
CY->NU
D
D
D
D
D
D
CY->EN
CY->NU
CY->NU
D
D
D
D
D
Ligand
Receptor
Molecule in the pathway
CY->NU
Activationchemical
Complex formation
Gene Symbol
D
D
Accession Number: NetPath_18
Proteins in a complex interaction
Enzyme complex
(Protein-Protein interaction)
D
Reactions through unknown mechanisms/molecules
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
CY
Extracellular
EC
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
NU
NucleusCHEBI:33252
PM
Plasma membrane
Molecular association

GPML Annotator: Rn_IL-7_NetPath_19.gpml

Pik3r1uniprot
Il7runiprot
Jak3uniprot
Il2rguniprot
Jak1uniprot
Fynuniprot
Lyn
Stat5auniprot
Stat5buniprot
Stat3uniprot
Pik3r1uniprot
Ptk2buniprot
Irs1uniprot
Irs2uniprot
Akt1uniprot
Stat1uniprot
Stam2uniprot
RGD1564499
Baxuniprot
Bad
Foxo3a
Gsk3buniprot
Foxo1auniprot
Rb1uniprot
Ccnd2uniprot
Ccna2uniprot
Cdk4uniprot
CDK2uniprot
Cltcuniprot
Bcl2l11uniprot
Mcl1uniprot
Blkuniprot
Mapk1uniprot
Mapk3uniprot
Cblbuniprot
Shc1uniprot
Grb2uniprot
Sos1uniprot
RGD1561386
Irf1uniprot
Muc1uniprot
Gene Symbol
Hrasuniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
D
D
D
PM
CY
NU
EN
GO
MT
Plasma membrane
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
Molecular association
Reaction through unknown mechanisms/molecules
Phosphorylationchemical
Autophosphorylationchemical
Dephosphorylationchemical
Palmitoylationchemical
Ubiquitination
Proteolytic cleavage
Glycosylation
Acetylationchemical
Sumoylationchemical
Methylationchemical
Recruitment
Activationchemical
Inhibitionchemical
Translocation
Cytoplasm
NucleusCHEBI:33252
Endosome
Golgi apparatus
Mitochondrion
Accession Number: NetPath_19
EC
Extracellular
Deacetylationchemical
Demethylationchemical
Desumoylation
Deubiquitination
Control

GPML Annotator: Rn_IL-9_NetPath_20.gpml

Il9uniprot
Il9runiprot
Il2rguniprot
Irs1uniprot
Pik3r1uniprot
Irs2uniprot
Grb2uniprot
Htatipuniprot
Stat3uniprot
Stat3uniprot
Jak1uniprot
Vcpuniprot
Jak3uniprot
Map2k2uniprot
Mapk1uniprot
Mapk3uniprot
Map2k1uniprot
Shc1uniprot
Stat1uniprot
Stat5auniprot
Stat5buniprot
Akt1uniprot
Ptpn11uniprot
TYK2uniprot
Socs3uniprot
Molecular association
CY->NU
Translocation
CY
NU
Autophosphorylationchemical
Phosphorylationchemical
D
Reaction through unknown mechanisms/molecules
D
D
D
Inhibitionchemical
Receptor
Ligand
Activationchemical
Accession Number: NetPath_20
Gene Symbol
Molecule in the pathway
Cytoplasm
NucleusCHEBI:33252
Proteins in a complex interaction
Proteins in a complex interaction
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
PM
Plasma membrane
(Protein-protein interaction)

GPML Annotator: Rn_Inflammatory_Response_Pathway.gpml

Tnfsf5uniprot
RGD:619830
Zap70uniprot
Il2rauniprot
Il2rbuniprot
Il2rguniprot
Il5rauniprot
Il4runiprot
Cd80uniprot
Cd86uniprot
Cd28uniprot
Il2uniprot
Il4uniprot
Ifnguniprot
Tnfrsf1auniprot
Tnfrsf1buniprot
Tnfuniprot
Ltauniprot
Il1auniprot
Il1buniprot
Il6uniprot
Fn1uniprot
Lama5uniprot
Lamb2uniprot
Lamc2uniprot
Lamc1uniprot
Vtnuniprot
Il10rauniprot
Mmp2uniprot
Col3a1uniprot
Col1a2uniprot
Col1a1uniprot
Fcgr1uniprot
H2-Eb1uniprot
Lamb1-1uniprot
Thbs1uniprot
Thbs3uniprot
Il5uniprot
Ighachemical
Fcamr
Lckuniprot
Fibroblast
Blood or Lymph
Epithelium
Inflammation
Early Response
Fibrotic Response
TH-cell
Macrophage
B-cell

GPML Annotator: Rn_Insulin_Signaling.gpml


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Insruniprot
Igf1runiprot
Irs1uniprot
Irs2uniprot
IRS-4
Pik3cauniprot
Pik3cbuniprot
Pik3cguniprot
Pik3cduniprot
Pik3r1uniprot
Pik3r2uniprot
Pik3r3uniprot
Pik3r4uniprot
Pik3c2auniprot
Pik3c3uniprot
Pik3c2guniprot
Pdpk1uniprot
Akt1uniprot
Akt2uniprot
Gsk3buniprot
Gsk3auniprot
Slc2a4uniprot
Ptenuniprot
Hint1uniprot
Prkczuniprot
Pscd3uniprot
Arf6uniprot
Arf1uniprot
Inpp4auniprot
Trib3uniprot
Foxo1auniprot
Pfkmuniprot
Gys1uniprot
Gab1uniprot
Shc1uniprot
Shc2uniprot
Grb2uniprot
Ptpn11uniprot
Sos2uniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
Map2k3uniprot
Map2k4uniprot
Map2k5uniprot
Map2k6uniprot
Map3k1uniprot
Map3k2uniprot
Map3k3uniprot
Map3k4uniprot
Mapk3uniprot
Mapk4uniprot
Mapk1uniprot
Mapk6uniprot
Mapk13uniprot
Mapk9uniprot
Mapk10uniprot
Map4k1uniprot
Map3k5uniprot
Map3k10
Mapk8uniprot
Mapk14uniprot
Map3k8uniprot
Map3k12uniprot
Map4k2uniprot
Map3k7uniprot
Map3k11
Map2k7
Mapk11uniprot
Map3k9
Map4k4uniprot
Mapk7uniprot
Map3k13
Map4k3uniprot
Map3k6
LOC303259
Mapk12uniprot
Map4k5uniprot
Map3k14uniprot
Rps6kb1uniprot
Rps6ka2uniprot
Rps6kb2uniprot
Rps6ka1uniprot
Rps6ka5uniprot
LOC317203
Rps6ka4uniprot
Irs3chemical
Ppp1ccuniprot
Ptprf
Cbluniprot
Cblbuniprot
Cblcuniprot
Rapgef1chemical
Cap1uniprot
Sorbs1uniprot
Rhojuniprot
Snx26uniprot
Rhoquniprot
Crkuniprot
Flot1uniprot
Flot2uniprot
Apsuniprot
Ptpn1uniprot
Frap1uniprot
Eif4euniprot
Eif4ebp1uniprot
Lipeuniprot
Gys2uniprot
Egr1uniprot
Fosuniprot
Jununiprot
Slc2a1uniprot
Grb10uniprot
Shc3uniprot
Hrasuniprot
Rraduniprot
Inppl1
Prkcauniprot
Prkcb1uniprot
PRKCQuniprot
Prkchuniprot
Prkcduniprot
Enpp1uniprot
Gyg1uniprot
Pfkluniprot
Tsc1uniprot
Rhebuniprot
Tsc2uniprot
Rab4auniprot
Stxbp4uniprot
Vamp2uniprot
Snap25uniprot
Snap23uniprot
Ehd1uniprot
Ehd3uniprot
Myo1cuniprot
Kif5buniprot
Kif3auniprot
Sgkuniprot
Sgk2uniprot
Sgkluniprot
Foxo3a
Tbc1d4uniprot
Kcnh8uniprot
Srfuniprot
Grb14uniprot
Stxbp1uniprot
Stxbp2uniprot
Stxbp3uniprot
Stx4auniprot
Mapk8uniprot
Socs1uniprot
Socs3uniprot
Prkaa1uniprot
Prkaa2uniprot
Ikbkbuniprot
RGD:1303073
Rac1uniprot
Rac2uniprot
Rps6ka3uniprot
Glucose Transport
Modulators of Insulin Action
MEK/MAP Kinases
Insulin Receptor Substrates
PI 3-Kinase
p90 Rsk Kinases
Transcriptional Regulators & Immediate Early Genes
Vesicular Trafficking
p70 S6 Kinases
Metabolic Regulation
Ras-MAPK Signaling
PDK/Akt Signaling
Tor Signaling
Translation Regulation

GPML Annotator: Rn_Integrin-mediated_cell_adhesion_KEGG.gpml

Cdc42uniprot
Shc1uniprot
Shc3uniprot
Araf1uniprot
Brafuniprot
Raf1uniprot
Mapk4uniprot
Mapk7uniprot
Capns1uniprot
Mylk2uniprot
Arhgef7uniprot
Rac1uniprot
Rac2uniprot
Rac3uniprot
Pdpk1uniprot
Vav2uniprot
Vav3uniprot
Rock2uniprot
Rock1uniprot
SH3D5uniprot
Sos2uniprot
MGC94099
Pik3r2uniprot
Zyxuniprot
Cav1uniprot
RGD:620348
Cav3uniprot
Fynuniprot
Grb2uniprot
Sepp1uniprot
Ha-Rasuniprot
Ptk2uniprot
Ptk2uniprot
Ilkuniprot
p110uniprot
Rhouniprot
PI5K
Cskuniprot
Bcar1uniprot
Srcuniprot
Akt1uniprot
Akt2uniprot
MYO-P
MYO
Capn2uniprot
Capn3uniprot
Capn5uniprot
Capn7uniprot
Capn9uniprot
Capn10uniprot
RGD:1302946
Capn6uniprot
Pak1uniprot
Pak2uniprot
Pak3uniprot
Pak4uniprot
Pak6
Vaspuniprot
ACTN
Tlnuniprot
Map2k3uniprot
Map2k5uniprot
Map2k6uniprot
Mapk12uniprot
Akt3uniprot
Dock1uniprot
Crkuniprot
Rapgef1chemical
RAP-1A
Rap1buniprot
Mapk1uniprot
Mapk6uniprot
Map2k1uniprot
Map2k2uniprot
Capn1uniprot
Itga1uniprot
Itga2uniprot
Itga3uniprot
Itga4uniprot
Itga5uniprot
Itga6uniprot
Itga7uniprot
Itga8
Itga9
Itga10
Itga11uniprot
Itga2buniprot
Itgaeuniprot
ITGADuniprot
Itgaluniprot
Itgamuniprot
Itgavuniprot
Itgaxuniprot
Itgb1uniprot
Itgb2uniprot
Itgb3uniprot
Itgb4uniprot
Itgb5uniprot
RGD:1303119
Itgb7uniprot
Itgb8
Srcuniprot
Vcluniprot
Tns
Mapk10uniprot
Pxnuniprot
CAPNuniprot
PI3Kuniprot
Phosphatidylinositiolchemical
signaling system
C3Guniprot
F-actinchemical
p130 Cas
MEK hmdbid:HMDB00474
ERKenzymeuniprot
PAK
cell proliferation
F-actinchemical
cell motility
cell maintenance
cell maintenance
RAF
CAPNuniprot
PAK
ECMuniprot
Integrin alpha
Integrin beta
ITGA
ITGB

GPML Annotator: Rn_Irinotecan_pathway_PharmGKB.gpml

Ces2uniprot
RGD:621508
Irinotecanchemical
SN-38
CYP3A4uniprot
CYP3A5uniprot
M4
APCuniprot
NPCuniprot
CYP3A4uniprot
CYP3A5uniprot
CYP3A4uniprot
RGD:621508
Ces2uniprot
SN-38
Ugt1a1uniprot
UGT1A9uniprot
Abcc1uniprot
Abcc2uniprot
SN-38
RGD:621508
Ces2uniprot
Abcc1uniprot
Abcc2uniprot
Abcg2uniprot
Ugt1a6uniprot
Ugt1a1uniprot
UGT1A10uniprot
SN-38G
Ces2uniprot
RGD:621508
Bcheuniprot
Abcc2uniprot
Ugt1a6uniprot
Abcc1uniprot
SN-38
Irinotecanchemical
Irinotecanchemical
Neutropenia
Liver Cell
Diarrhea
Intestine
Model human liver cell showing blood, bile and
intestinal compartments, indicating tissue
involvment of genes in the irinotecan pathway.

GPML Annotator: Rn_Kit-Receptor_NetPath_6.gpml

Grb7uniprot
Pik3r1uniprot
Pik3r2uniprot
Shc1uniprot
Csf2rb1uniprot
Grb2uniprot
Socs6uniprot
Socs4uniprot
RGD1564914
Cishuniprot
Cltcuniprot
Crkuniprot
Srcuniprot
Plce1uniprot
Jak2uniprot
Grapuniprot
Ptpru
RGD1311584
Prkcauniprot
Plcg1uniprot
Stat1uniprot
Stat5auniprot
Stat5buniprot
Pik3cguniprot
Apsuniprot
RGD1566234
Akt1uniprot
Tecuniprot
Lyn
Dok1uniprot
Ptpn6uniprot
Ptpn11uniprot
Eporuniprot
Rps6ka1uniprot
Mitfuniprot
Mapk1uniprot
Abl1_mapped
Inpp5d
Fgruniprot
Hckuniprot
Yes1uniprot
Rasa1uniprot
RGD1564385
Crkluniprot
RGD1561386
Socs1uniprot
Vav1uniprot
Vav2uniprot
Matkuniprot
Bad
Sos1uniprot
Ep300
Fynuniprot
Prkcb1uniprot
Hrasuniprot
Raf1uniprot
Spred2uniprot
Spred1uniprot
Sh3kbp1uniprot
Cblbuniprot
Tnfrsf10buniprot
Btkuniprot
Kit
Kitluniprot
Kit
Kitluniprot
Map2k1uniprot
Stat3uniprot
Mpdzuniprot
Dok1uniprot
p85 complex
Molecular association
Phosphorylationchemical
Activationchemical
Inhibitionchemical
Autophosphorlation
Dephosphorylationchemical
Plasma Membrane
Cytoplasm
NucleusCHEBI:33252
CY->PM
Accession Number: NetPath_6; cellmap:6
Proteins in a complex interaction
Enzyme complex
Receptor
Ligand
Gene Symbol
Molecule in the pathway
(Protein-protein interaction)
D
PM
CY
NU
D
Reaction through unknown mechanisms/molecules
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Proteolytic cleavage
Sumoylationchemical
Ubiquitination
Deubiquitination
Recruitment
Control
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondrion
Translocation
Desumoylation

GPML Annotator: Rn_Krebs-TCA_Cycle.gpml

RGD:735073
Suclg1uniprot
Mdh1uniprot
Pc
Mor1uniprot
Fh1uniprot
Sdhauniprot
Sdhduniprot
Pdha1uniprot
Pdha2uniprot
Dlatuniprot
Cs
Idh3auniprot
Idh3Buniprot
Idh3guniprot
RGD:708561
Aco2uniprot
Pdk2uniprot
Pdk4uniprot
Pdk3uniprot
Sdhbuniprot
Sdhcuniprot
Sucla2uniprot
Suclg2uniprot
Idh2uniprot
Ogdhuniprot
Pdhxuniprot
Dlduniprot
Pdhbuniprot
Pdb
Pyruvate hmdbid:HMDB00243
Acetyl-CoA hmdbid:HMDB01206uniprot
Succinate hmdbid:HMDB00254
Malate hmdbid:HMDB03256
alpha-Ketogluteratechemical
Oxaloacetate hmdbid:HMDB00223
Fumarate hmdbid:HMDB00134
Malate hmdbid:HMDB03256
Oxaloacetate hmdbid:HMDB00223
Isocitrate hmdbid:HMDB00193
Fatty Acid Synthesis
Glycolysis
Gluconeogenesischemical
Degradation of Fatty Acids
Containing an Odd Number of Carbons
Electron Transport Chain
Degradation of Fatty Acids
Containing an Even Number of Carbons
Citrate hmdbid:HMDB00094
Succinyl-CoA hmdbid:HMDB01022
Mitochondrion
Cytosol

GPML Annotator: Rn_MAPK_Cascade.gpml

Sipa1l1uniprot
Hras1uniprot
Nras1
Map2k1uniprot
Map2k2uniprot
Mapk3uniprot
Mbpuniprot
Mtap2uniprot
Map3k1uniprot
Mapk10uniprot
Mapk14uniprot
Jununiprot
RapGAPIIchemical
Map3k2uniprot
MEKK3uniprot
Rasa3uniprot
Plcb3uniprot
Mapk1uniprot
Kcnh8uniprot
Araf1uniprot
Raf1uniprot
Brafuniprot
Kras2uniprot
Rrasuniprot
MKK3uniprot
Map2k6uniprot
JNKK 1uniprot
MKK7uniprot
Map3k12uniprot
Mapk12uniprot
GDP hmdbid:HMDB01201
Activated
GTP hmdbid:HMDB01273
G
i
G
q
and G
g
b
G
Stress Activated Pathways
p38 MAPK Pathway
Growth and Mitogenesis
Apoptosis
NucleusCHEBI:33252
Rap1GAPuniprot

GPML Annotator: Rn_MAPK_signaling_pathway_KEGG.gpml


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Pr1uniprot
Ntrk1uniprot
Egfruniprot
fgfr
Pdgfrbuniprot
Ngfbuniprot
Bdnfuniprot
Ntf5uniprot
Egfuniprot
Fgf4uniprot
Pdgfbuniprot
Grb2uniprot
Sos2uniprot
Kras2uniprot
Nrasuniprot
Mrasuniprot
Gna12uniprot
Gap1m
Rasgrf2
Rasgrp4
Rasgrp1
Nf1uniprot
Rasa1uniprot
Prkcduniprot
Prkccuniprot
Prkcb1uniprot
Prkczuniprot
Prkchuniprot
Prkcduniprot
Il1r2uniprot
Il1r1uniprot
RGD:619831
Acvr1cuniprot
Acvr1buniprot
Tgfbr1uniprot
Tgfbr2uniprot
Cd14uniprot
Tnfuniprot
Il1auniprot
Il1buniprot
Tnfsf6uniprot
Tgfb3uniprot
Tgfb1uniprot
Tgfb2uniprot
Gadd45auniprot
traf6uniprot
tab2uniprot
ecsitchemical
Daxxuniprot
tab1uniprot
traf2uniprot
Casp1uniprot
Casp3uniprot
Casp9
Casp7uniprot
Casp8uniprot
Casp2uniprot
Casp6uniprot
Rac1uniprot
Rac2uniprot
Cdc42uniprot
Brafuniprot
Raf1uniprot
Mosuniprot
Prkacauniprot
Rap1buniprot
RAP-1A
Map4k3uniprot
hgk
hpk1uniprot
Pak1uniprot
Pak2uniprot
Stk3uniprot
mink
gckuniprot
Map3k8uniprot
Map3k1uniprot
mlk3
Map3k2uniprot
lzk
Map3k12uniprot
mltkuniprot
ask2
Map3k5uniprot
Map3k7uniprot
mekk4uniprot
RGD:708455
Taok2uniprot
Ppm1buniprot
Map2k5uniprot
Mapk7uniprot
Map2k1uniprot
Map2k2uniprot
Mapk1uniprot
Mapk3uniprot
Mapk4uniprot
Mapk6uniprot
mp1uniprot
RGD:708516
Ptpn5uniprot
Ptprruniprot
Dusp1uniprot
Dusp6uniprot
Dusp5uniprot
Dusp7uniprot
Dusp4uniprot
Dusp10uniprot
nikuniprot
RGD:735223
Ikbkbuniprot
Akt1uniprot
Akt2uniprot
Akt3uniprot
Ppp5cuniprot
mkk3uniprot
Map2k6uniprot
Ppm1auniprot
Mapk13uniprot
Mapk12uniprot
Mapk14uniprot
Nfkb1uniprot
Maptuniprot
Stmn1uniprot
Pla2g5uniprot
Pla2g10uniprot
mnk1/2
rsk2uniprot
Atf4uniprot
elk-1chemical
Sap1achemical
Mycuniprot
SRFuniprot
Fosuniprot
RGD:621616
Ppp3cauniprot
Ppp3cbuniprot
Ppp3r1uniprot
Ppp3r2uniprot
mkk7
mkk4
Mapk8uniprot
Mapk10uniprot
Mapk9uniprot
Mapk8ipuniprot
RGD:708516
Ptpn5uniprot
Ptprruniprot
flnauniprot
JSAP1uniprot
Arrb1uniprot
Arrb2uniprot
Crkuniprot
Crkluniprot
Hspa8uniprot
Hspa1auniprot
Hspa5uniprot
Jununiprot
Junduniprot
nfat2/4
Atf2uniprot
Elk-1chemical
Tp53uniprot
sap1achemical
Ddit3uniprot
Max
mef2cuniprot
Hspb2uniprot
Hspb1uniprot
Atf4uniprot
Nr4a1uniprot
prak
Mapkapk2uniprot
msk1/2
Cdc25buniprot
nlkuniprot
Classical MAP kinase Pathway
Ca2+CHEBI:29108
DAGuniprot
LPSCHEBI:16412
DNA damage
JNK & p38 MAP kinase pathway
Serum, cytotoxic drugs, irradiation,
heatshock, reactive oxy species
LPS and other stress
Integrin-mediated
cell adhesion
cAMP hmdbid:HMDB00058
IP3
Heteromeric G-protein
Phosphatidylinositolchemical
signaling system
MAPKKKK
ERK5 pathway
Serum, EGF,
reactive oxygen species,
or Srk tyrosinkinase
downstream
PTPuniprot
MKP
p38uniprot
Proliferation, inflammation, anti-apoptosis
DNACHEBI:16991
DNACHEBI:16991
Proliferation,
differentiation
JNKenzymeuniprot
PTPuniprot
MAPKKKenzymeuniprot
MAPKKenzymeuniprot
MAPKenzymeuniprot
Transcription factors
DNACHEBI:16991
Alzheimer’s disease
Wnt signaling
DNACHEBI:16991
Apoptosis
Proliferation, differentiation,
inflammation
DNACHEBI:16991
Proliferation, differentiation
Cell
Cycle
pathway

GPML Annotator: Rn_Matrix_Metalloproteinases.gpml


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RGD:631408
Mmp13uniprot
Mmp7uniprot
Mmp12uniprot
Mmp2uniprot
Mmp9uniprot
Timp1uniprot
Timp2uniprot
Timp3uniprot
Mmp3uniprot
Mmp10uniprot
Mmp11uniprot
Mmp23uniprot
Bsguniprot
Tnfuniprot
Mmp14uniprot
Mmp16uniprot
Mmp24uniprot
Tcf20uniprot
Timp4uniprot
Mmp1uniprot
Mmp20uniprot
Mmp19uniprot
Mmp22
Mmp27
Mmp28
Mmp15uniprot
Mmp17uniprot
Mmp25
Gelatinases
Collagenases
Stromelysinschemical
Membrane-type MMPs
Matrilysinenzyme
Inhibitors
Enamelysinuniprot
Other
Potential Inducers of Transcription
Metalloelastaseenzyme
Based on Vu & Werb (2000)
Matrix metalloproteinases: effectors of
development and normal physiology.
Genes Dev 14:2123-2133

GPML Annotator: Rn_Mitochondrial_fatty_acid_betaoxidation.gpml

Dciuniprot
Decr1uniprot
Cpt1buniprot
Acadluniprot
Acadvluniprot
Acsl5uniprot
Acsl4uniprot
Cpt1auniprot
Acsl3uniprot
Acsl6uniprot
Hadhscuniprot
Hadhauniprot
Acaa2uniprot
Cpt2uniprot
Acadmuniprot
Acadsuniprot
Echs1uniprot
Acsl1uniprot
Slc25a20uniprot
Long chain Acyl-CoA
trans-chemical
3-Ketoacyl-CoAchemical
saturated
unsaturated
mitochondrial matrix
cytosol
-Enoyl-CoAchemical
Acyl-CoA (n-2)
2,4 Dienoyl-CoA
Acetyl-CoA hmdbid:HMDB01206uniprot
D
2
Long Chain Fatty Acid
3-L-Hydroxyacyl-CoAchemical
Long chain acyl-carnitine
Long chain acyl-carnitine
Acyl-CoA dehydrogenases:
cis-chemical
D-
-Enoyl-CoAchemical
3
Long chain Acyl-CoA

GPML Annotator: Rn_Monoamine_GPCRs.gpml

Drd1auniprot
Drd2uniprot
Drd3uniprot
Drd4uniprot
Htr2auniprot
Htr2buniprot
Htr4uniprot
Htr5auniprot
Htr5buniprot
Htr6uniprot
Htr7uniprot
Adra1auniprot
Adra1buniprot
Adra1duniprot
Adra2auniprot
Adra2buniprot
Adra2cuniprot
Adrb2uniprot
Adrb3uniprot
Admruniprot
Chrm1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Chrm5uniprot
Adrb1uniprot
Drd5uniprot
Hrh1uniprot
Hrh2uniprot
Htr1auniprot
Htr1buniprot
Htr1duniprot
Htr1funiprot
Htr1e
Htr1duniprot
Htr2cuniprot
Dopamine hmdbid:HMDB00073
Adrenergic
Serotonin hmdbid:HMDB00259
Gi/Go Pathway
Gq/G11 Pathway
Gs Pathway
Gs Pathway
Muscarinic
Histamine hmdbid:HMDB00870
Acetylcholine Receptors
Receptors
Receptors
Receptors
Receptors

GPML Annotator: Rn_mRNA_processing_Reactome.gpml

Hnrpa1uniprot
Hnrpa2b1uniprot
Hnrpabuniprot
Hnrpcuniprot
Hnrpkuniprot
Hnrpluniprot
Fusip1uniprot
Snrpd1uniprot
Snrpd2uniprot
Snrpeuniprot
Snrpfuniprot
SNRPGuniprot
Cstf1uniprot
CSTF2uniprot
Cpsf3uniprot
Cpsf1uniprot
Cpsf2uniprot
Cstf2tuniprot
Pabpn1uniprot
Sfrs9uniprot
LSM2uniprot
SFRS1uniprot
SFRS2uniprot
Sfrs3uniprot
Sfrs5uniprot
Srrm1uniprot
Clkuniprot
Clk3uniprot
CLK2uniprot
Clk4uniprot
U2af2uniprot
Snrpnuniprot
Sfrs7uniprot
SFRS6uniprot
Sfrs10uniprot
Polr2auniprot
SUPT5Huniprot
Rnmtuniprot
Rngttuniprot
Ncbp1uniprot
Ncbp2uniprot
Mettl3uniprot
Hnrpa3uniprot
Hnrpduniprot
Rbmxrtuniprot
Hnrph1uniprot
Hnrph2uniprot
Hnrpr
Hnrpmuniprot
PTBP1uniprot
U1 snRNA
U4 snRNA
U5 snRNA
Rnu6
Snrp70uniprot
Snrpauniprot
RGD:621301
Smc1l1uniprot
Cd2bp2uniprot
Nsep1uniprot
Dhx9uniprot
SNRPD3uniprot
Sfrs14uniprot
Tmp21uniprot
AI450757
SFRS16uniprot
Fusuniprot
Sf4uniprot
Rbm5uniprot
Cpsf5uniprot
Cpsf4uniprot
Snrp116uniprot
Txnl4uniprot
Ssfa1uniprot
Sf3b5uniprot
SFRS4uniprot
RNU2uniprot
Snrpb2uniprot
Sf3a3uniprot
Snrpa1uniprot
Sf3a1uniprot
Sf3a2uniprot
Sf3b1uniprot
Sf3b2
Sfb3
Sf3b4
Dhx38
Cdc40uniprot
Dnajc8uniprot
Prpf8uniprot
PHF5Auniprot
Prpf4uniprot
Ssfa1uniprot
Prpf4uniprot
LSM2uniprot
Ssfa1uniprot
Prpf8uniprot
Cstf3uniprot
RGD1307679
Papolauniprot
Ddx1uniprot
HRMT1L1uniprot
Hrmt1l2uniprot
Pcbp2uniprot
Dicer1uniprot
RGD:621744
Dhx15uniprot
Dhx8
Prpf4buniprot
Nxf1uniprot
RGD:1302963
Cugbp1uniprot
Rnpc2uniprot
Brunol4
Nonouniprot
Xrn2uniprot
Spopuniprot
SMN1uniprot
Cugbp2
PTBP2uniprot
Prpf3uniprot
Fnbp3uniprot
Rbm17uniprot
Lsm7uniprot
U2AF1uniprot
Srpk1uniprot
Srpk2uniprot
Ppm1guniprot
Srrp
SRrp40uniprot
Rnps1uniprot
RGD:621390
Hnrpu
Sfrs8
Sfpquniprot
Pskh1uniprot
5 G cap
3
5
3
5
3
5
Polr2auniprot
Spt5uniprot
Rnmt (methyltransferase)
GMP hmdbid:HMDB01397uniprot
mRNA Capping
Processing of Intron-Containing Pre-mRNA
iPo
Cap Binding
Methylation of mRNA
heterogeneous nuclear ribonucleoproteins
Formation of pre-mRNPs
Internal methylation of mRNA
mRNA splicing (major pathway)
pre-mRNA
Primary RNA transcript
hnRNPs
Formation of the Spliceosomal E complex
snRNP Sm core complex
U1 snRNP
3
exon 1
exon 2
intron
GU
A
YYYY
AG
5
SR-binding sites
SR-binding sites
U1 snRNP
U2AF
65
35
RNA helicase A
U2AF
Serine/Argenine Rich Proteins(SR)
mRNA capping
Internal methylation of mRNA
Formation of pre-mRNPs
SR-proteins
Regulation of
Alternative Splicing
Additional Factors
Regulators
splicing factor SF3A
splicing factor SF3B
U2 snRNPs
SF3b14buniprot
SR-proteins
Additional Factors
RNA helicase
U2 snRNP
snRNP Sm core complex
Formation of the Spliceosomal A complex
Formation of the Spliceosomal E complex
Formation of the Spliceosomal A complex
U2 snRNP
3
A
YYYY
AG
5
exon 1
exon 2
U4/U6
U5
Formation of the Spliceosomal B complex
U4 snRNP
U6 snRNP
U5 snRNP
snRNP Sm core complex
U4:U5:U6 tri-snRNP complex
YYYY
AG
5
exon 1
exon 2
A
3
U5
Note: New participating members shown at each step
UG
U6
U2
U4
U1
Formation of the Spliceosomal C complex
Poly(A)-binding protein IIuniprot
CF II
Poly(A) polymerase alphauniprot
CF Ichemical
YYYY
AG
5
exon 2
A
3
UG
exon 1
YYYY
AG
5
A
3
exon 1
exon 2
YYYY
AG
A
5
exon 2
CstF
CFIenzymeuniprot
CF II
Poly(A)pb II
Poly(A) pol
5
3
AAAAAAA
Pi
P-
degraded
SR protein kinases
Additional SR proteins
Putative Alternative Splicing
Accessory Proteins
mRNA splice site selection
hnRNP regulators
RNAi pathway
3
exon 1
Formation of the Spliceosomal B complex
Formation of the active Spliceosomal C complex
Lariat Formation and 5’-Splice Site Cleavage
Cleavage at the 3’-Splice-Site and Exon Ligation
(1)
(2)
(2a)
(2b)
(2c)
(3)
mRNA 3’-end processing
Cleavage of mRNA at the 3’-end
mRNA polyadenylation
CPSF
CstF
right click on blue text for detailed information
5
3
AAUAAA
CA
ATP hmdbid:HMDB00538
CPSF
splicesome associated helicases
Misc.
Rngtt (capping enzyme)
SR-kinases
Kinases Phosphorylating RS domains?
P
SR-phosphatases
SR-proteins
SR protein phosphatases
SR-repressor proteins

GPML Annotator: Rn_Notch_signaling_KEGG.gpml

RBPSUHLuniprot
RBP-Juniprot
Dll4uniprot
Dll3uniprot
Dll1uniprot
Jag2uniprot
Jag1uniprot
Lfnguniprot
Mfnguniprot
Rfnguniprot
Adam17uniprot
Notch1uniprot
Notch2uniprot
Notch3uniprot
Notch4uniprot
Dvl1uniprot
Dvl2uniprot
Dvl3uniprot
Numb
Numbluniprot
Aph1auniprot
Aph1buniprot
Tnfuniprot
Psen1uniprot
Psen2uniprot
Ncstnuniprot
DTX1uniprot
Dtx2uniprot
DTX3uniprot
Dtx4
DTX31
Ctbp1uniprot
Ctbp2uniprot
Hdac1uniprot
Hdac2uniprot
Ncor2uniprot
CIR hmdbid:HMDB00904uniprot
Ptcrachemical
Hes5uniprot
Hes1uniprot
SKIPuniprot
LOC330129
Pcafchemical
Gcn5l2uniprot
Crebbpuniprot
MAML3uniprot
Maml1uniprot
NICD
co-repressor complex
DNACHEBI:16991
Notch Intracellular Domain
MAPK signaling pathway
gene expression
S2
S3
Ras/Map

GPML Annotator: Rn_Nuclear_Receptors.gpml

Thrauniprot
Thrbuniprot
Thrbuniprot
Rarauniprot
Rarbuniprot
Pparauniprot
Pparduniprot
Pparguniprot
Nr1d2uniprot
Nr0b1uniprot
Nr1h2uniprot
Nr1h3uniprot
Vdruniprot
Nr1i2uniprot
Nr1i3uniprot
Hnf4auniprot
Rxrauniprot
Rxrguniprot
RGD:621082
Nr2f1uniprot
Nr2f2uniprot
Nr2f6uniprot
Esr1uniprot
Esr2uniprot
Nr3c1uniprot
Pgruniprot
Ar
Nr4a1uniprot
Nr4a2uniprot
Nr5a1uniprot
Nr5a2uniprot
Rxrbuniprot
Esrrauniprot
Esrrbuniprot
Rorauniprot
Rorbuniprot
Rorcuniprot
Nr2e1uniprot
Rarguniprot
Thyroid
Peroxisome Proliferator
Nuclear Receptor ROR
Oxysterols Receptor
Vitamin D3 Receptoruniprot
Hepatocyte Nuclear Factor
Orphan Nuclear Receptor
Nuclear receptor TLXuniprot
Coup Transcription Factor
Estrogen Receptoruniprot
Steroid Hormone Receptor
Glucocorticoid Receptoruniprot
Progesterone Receptoruniprot
Androgen Receptoruniprot
NR5 SUPERFAMILY
Steroidogenic Receptor
Orphan Receptor
NR0 SUPERFAMILY
NR1 SUPERFAMILY
NR2 SUPERFAMILY
NR3 SUPERFAMILY
NR4 SUPERFAMILY
Orphan Receptor
Activated Receptor
Orphan Nuclear
Receptor
Retinoic Acid hmdbid:HMDB06219
Retinoic Acid Receptor (RXR)
Receptor
Receptor (RAR)

GPML Annotator: Rn_Nuclear_receptors_in_lipid_metabolism_and_toxicity.gpml

Cyp4a11uniprot
RARa
RARg
Rarbuniprot
Cyp7a1uniprot
Cyp7a1uniprot
Pparguniprot
Pparauniprot
Abcd3uniprot
Abcd2uniprot
Abcb4uniprot
Abca1uniprot
PPARb
Abca1uniprot
Cyp4b1uniprot
RGD:619923
Cyp3a13uniprot
Cyp2c7uniprot
Cyp24a1uniprot
Cyp7a1uniprot
Cyp8b1uniprot
Abcb11uniprot
Abca1uniprot
Abcg1uniprot
Abcg5uniprot
abcg6
Cyp27b1uniprot
Vdruniprot
Nr1i2uniprot
Nr1i3uniprot
Cyp3a13uniprot
Cyp2c7uniprot
Abcc2uniprot
Abcb1auniprot
Abcb1uniprot
Nr1h3uniprot
Abcc3uniprot
Cyp3a13uniprot
Cyp2e1uniprot
Cyp2c7uniprot
RGD:619923
Cyp1a2uniprot
Nr1h4uniprot
Cyp26a1uniprot
Right click for comments
Acetyl CoA hmdbid:HMDB01206uniprot
IsoprenoidsCHEBI:24913
Lanosterol hmdbid:HMDB01251
7-DehydroCholesterol hmdbid:HMDB00032
Cholesterol hmdbid:HMDB00067
Oxysterolchemical
Bile AcidsCHEBI:3098
1,25-Dihydroxy-Vitamins D3
Fatty AcidsCHEBI:35366
DIET
XenobioticsCHEBI:35703
DIET
Retinoic Ac
SteroidsCHEBI:35341
Gene expression

GPML Annotator: Rn_Nucleotide_GPCRs.gpml

Adora1uniprot
Adora2auniprot
Adora2buniprot
Adora3uniprot
P2ry1uniprot
P2ry1uniprot
P2ry2uniprot
P2y3
P2ry4uniprot
P2y5uniprot
P2ry6uniprot
P2y7
P2y9uniprot
Adenosine hmdbid:HMDB00050
Adenine hmdbid:HMDB00034
Gi/Go Pathway
Gs Pathway
Gq/G11 Pathway

GPML Annotator: Rn_Nucleotide_Metabolism.gpml

Adsluniprot
LOC500228
Dhfruniprot
Purauniprot
Prps1uniprot
Prps2uniprot
Hprtuniprot
Oaz1uniprot
Srmuniprot
Sat
Rrm1uniprot
Pold1uniprot
Polguniprot
Polbuniprot
Nme2uniprot
Impdh1uniprot
Pola1uniprot
Ribose hmdbid:HMDB00283
PRPP hmdbid:HMDB00280uniprot
SAICAR hmdbid:HMDB00797
AICAR hmdbid:HMDB03192
IMP hmdbid:HMDB00175uniprot
DNACHEBI:16991
DNA Synthesis
dNTPs
dNTPs
GMP hmdbid:HMDB01397uniprot
dNTPs
Xanthine hmdbid:HMDB00292
GMP hmdbid:HMDB01397uniprot
Guanine hmdbid:HMDB00132
Uric Acid hmdbid:HMDB00289
Adenylosuccinate hmdbid:HMDB00536
AMP hmdbid:HMDB00045uniprot
Hypoxanthine hmdbid:HMDB00157
Spermine hmdbid:HMDB01256
Adenine hmdbid:HMDB00034
Spermidine hmdbid:HMDB01257
Putrescine hmdbid:HMDB01414
Ornithine hmdbid:HMDB03374
Polyaminechemical
Synthesis
Monophasphatechemical

GPML Annotator: Rn_Ovarian_Infertility_Genes.gpml

Bmpr1buniprot
Prlruniprot
Fshruniprot
Lhcgruniprot
RGD:620606
RGD:620606
Fig-alpha
Dmc1huniprot
Atmuniprot
LOC497834
RGD:1303008
Gdf9uniprot
Smpd1uniprot
LOC503240
Gja4uniprot
Gja4uniprot
Inhauniprot
Madh3uniprot
Pgruniprot
Esr2uniprot
Vdruniprot
Nr5a1uniprot
Ncor1uniprot
Nrip1uniprot
Egr1uniprot
Cebpbuniprot
Ptger2uniprot
Cdkn1buniprot
Ccnd2uniprot
Cdk4uniprot
Smpd1uniprot
Cyp19a1uniprot
RGD1305248
Zp2uniprot
TF2Duniprot
Granulosa Cell
Cytoplasm
NucleusCHEBI:33252
Oocyte
NucleusCHEBI:33252
Ooplasm

GPML Annotator: Rn_Oxidative_Stress.gpml

Maoauniprot
Nfixuniprot
Nrf2uniprot
Nfkb1uniprot
Sp1uniprot
Hmox1uniprot
Gpx1uniprot
Gpx3uniprot
Nqo1uniprot
Ugt1a6uniprot
Cat
Txn2uniprot
Txnrd1uniprot
Txnrd2uniprot
Gclcuniprot
Gsruniprot
Mt1auniprot
Gstt2uniprot
Mgst1uniprot
Cyp1a1uniprot
Xdhuniprot
Cybauniprot
Fosuniprot
Junbuniprot
Sod2uniprot
Sod1uniprot
Sod3uniprot
Mapk14uniprot
Mapk10uniprot
antioxidant genes
Induction of
Inhibition of oxidases
TF inhibition
repression
TF activation
Immediate-early
gene induction
Reactive Oxygen SpeciesCHEBI:26523
Adaptive response
Repression of ROS-
producing systems
Activationchemical
Stress-regulated MAP kinase

GPML Annotator: Rn_p38_MAPK_signaling_pathway.gpml

Mapk14uniprot
Mapk14uniprot
Map2k6uniprot
mlk1 map3k9
Map3k7uniprot
Map3k5uniprot
LOC500526
prak
Hspb1uniprot
Mapkapk2uniprot
Mapkapk2uniprot
Atf2uniprot
Rps6ka5uniprot
Mef2duniprot
Ddit3uniprot
Elk1uniprot
Stat1uniprot
Max
Mycuniprot
Hmgn1uniprot
Creb1uniprot
Pla2g4auniprot
mkk4
Map3k1uniprot
Rac1uniprot
Cdc42uniprot
Rasuniprot
Tgfbr1uniprot
Tgfb2uniprot
Traddchemical
traff2
Daxxuniprot
ripk1uniprot
Shc1uniprot
Grb2uniprot
ras-gef
Apoptosis
Translation
?
?
?
Stress: Osmotic shock
g-radiation, Anisomycin
Right click for comments
FASL, Inflammatory
Cytokines, UV, etc.
Growth Factors, UV
Trophic Factors, etc.
DNA transcription
Cytokines Production,
Apoptosis, etc.
?
?

GPML Annotator: Rn_Pentose_Phosphate_Pathway.gpml

G6pdxuniprot
G6pd2uniprot
Tktuniprot
Taldo1uniprot
Tktuniprot
Pglsuniprot
Pgduniprot
Rpeuniprot
Rpiauniprot
Glucose-6-Phosphate hmdbid:HMDB01401
6-Phosphoglucono-delta-lactone hmdbid:HMDB01127
6-Phosphogluconate hmdbid:HMDB01316
Ribulose-5-Phosphate hmdbid:HMDB00618
Ribose-5-Phosphate hmdbid:HMDB01548
(Hexose Monophosphosphate Shunt
or Phosphogluconate Pathway)
Fructose-6-Phosphate + Erythose-4-Phosphate
Fructose-6-Phosphate hmdbid:HMDB00124
Sedoheptulose-7-Phosphate hmdbid:HMDB01068
+
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
+
Glycolysis/Gluconeogenesis
Xylulose-5-Phosphate hmdbid:HMDB00868
Glyceraldehyde-3-Phosphate hmdbid:HMDB01112
Nucleotidechemical
Biosynthesis

GPML Annotator: Rn_Peptide_GPCRs.gpml

Agtr1auniprot
Agtr1uniprot
Agtr1uniprot
Bdkrb2uniprot
Bdkrb1uniprot
Nmbruniprot
Grpruniprot
Brs3uniprot
Ccr9uniprot
Cxcr4uniprot
Ccr5uniprot
Cx3cr1uniprot
C3ar1uniprot
C5r1uniprot
Il8rbuniprot
Cckaruniprot
Cckbruniprot
Ednrauniprot
Ednrbuniprot
Galr1uniprot
Galr2uniprot
Galr3uniprot
Fshruniprot
Lhcgruniprot
Tshruniprot
Mc2runiprot
Mc3runiprot
Mc4runiprot
Mc5runiprot
Npy1runiprot
Npy2runiprot
Ppyr1uniprot
Npy5runiprot
Ntsr2uniprot
Oprd1uniprot
Oprk1uniprot
Oprm1uniprot
Oprluniprot
Gnrhruniprot
Trhruniprot
Ghsruniprot
Tacr1uniprot
Tacr3uniprot
Tacr2uniprot
Sstr1uniprot
Sstr2uniprot
Sstr3uniprot
Sstr4uniprot
Sstr5uniprot
Avpr1auniprot
Avpr1buniprot
Oxtruniprot
Avpr2uniprot
Il8rauniprot
FMLP-R1
Agtr2uniprot
FMLP3-R
FMLPR-2
Mc1runiprot
Npy6runiprot
Ntsr1uniprot
NK4-R
Cmkbr6uniprot
Ccr7uniprot
Ccr2uniprot
Ccr3uniprot
Ccr4uniprot
Ccr5uniprot
Cmkbr1uniprot
Ccr8uniprot
Ccr10uniprot
Cmkbr1l1uniprot
Bonzochemical
Cx3cr
Gpfy
Releasing Hormone
Receptors
Opioid Receptors
Neuropeptide Y Receptorsuniprot
Chemokine Receptors
Chemotactic Receptors
Angiotensin Receptors
Bombesin Receptors
Endothelin Receptors
Vasopressin and
Oxytocin hmdbid:HMDB02865uniprot
Galanin Receptors
Receptors
Glycoprotein Hormone
Receptors
Cholecystokinin/
Bradykinin Receptors
Somatostatin Receptors
Tachykinin Receptors
Gq Coupled
Gi Coupled
Gs Coupled
Gastrin Receptors
Melanocortins
Neurotensin Receptors

GPML Annotator: Rn_Prostaglandin_synthesis_regulation.gpml

Ptgs1uniprot
Ptgs2uniprot
Anxa2uniprot
Anxa1uniprot
Anxa6uniprot
Anxa4uniprot
Scgb1a1uniprot
Anxa5uniprot
S100a6uniprot
Hsd11b1uniprot
Ednrbuniprot
Edn1uniprot
Hpgduniprot
Prluniprot
Dtprpchemical
Ednrauniprot
Hsd11b2uniprot
Pla2g4auniprot
S100a10uniprot
Ptgisuniprot
Ptgdsuniprot
Tbxas1uniprot
Ptger1uniprot
Ptger2uniprot
Ptger3uniprot
Ptger4uniprot
Ptgfruniprot
Anxa3uniprot
Anxa8uniprot
Ptgiruniprot
Cyp11a1uniprot
Ptgdruniprot
PGF2uniprot
PGI2 hmdbid:HMDB01335uniprot
Ca
2+
Prostaglandin H2 hmdbid:HMDB01381
TXA2 hmdbid:HMDB01452
Cortisol hmdbid:HMDB00063
PGE2 hmdbid:HMDB01220
Cell Membrane
PhospholipidsCHEBI:16247
Inactive Metabolites
Cytoplasm
PG Synthases
Cortisone hmdbid:HMDB02802
Cortisol hmdbid:HMDB00063
Arachidonic Acid hmdbid:HMDB01043
Progesterone hmdbid:HMDB01830
Gq signaling
pathway
PGF2uniprot
Annexinschemical
release
prolactinuniprot
Annexinschemical
Ca
2+
PG Synthases
PG Receptors
PG Receptors

GPML Annotator: Rn_Proteasome_Degradation.gpml

Ubcuniprot
Hist1h2aa
Ccl2uniprot
H2afzuniprot
UBE1X
Ube1l
Psmc1uniprot
Nedd4auniprot
Psmc6uniprot
Psmd1uniprot
Psmd2uniprot
Psmd3uniprot
Psmd5uniprot
Psmd4uniprot
PSMC5uniprot
Psmc2uniprot
Psmc3uniprot
Psmc4uniprot
Psma1uniprot
Psma2uniprot
Psmb1uniprot
Psma3uniprot
Psma4uniprot
Psmb3uniprot
Psmb6uniprot
Psmb7uniprot
Psmb5uniprot
Psmb4uniprot
Psme1uniprot
Psme2uniprot
Ifnguniprot
Psmb9uniprot
Psmb10uniprot
Psmb8uniprot
Psme3uniprot
Psmd7uniprot
PSMD6uniprot
Psmd8uniprot
Psmd9uniprot
Psmd10uniprot
Psmd11uniprot
Psmd12uniprot
Psmd13uniprot
Psma6uniprot
Psma7uniprot
Psma5uniprot
Psmb2uniprot
Rpn2uniprot
Rpn1uniprot
RGD:708345
Ube2d2uniprot
Ube2g1uniprot
RGD:621096
ATP hmdbid:HMDB00538
AMP Ubiquitin/E1 Complex
Ubiquitin/E2 Complex
E3/Protein
Proteins to be Degraded
Ubiquitin/Protein
Proteasome 26 S
(PA700) (ATP dependent)
p45 ATPase Subunit
Unfolds and Degrades
Intact Proteins
Proteasome 20S
Catalytic Core (p45)
Activators of
Degrades only Peptides
Presentation by MHC class 1
Oxidatively Damaged
Cytosolic Proteins
20S Complex
Lid subunits
Alpha subunits
Beta subunits

GPML Annotator: Rn_Regulation_of_Actin_Cytoskeleton_KEGG.gpml

Ins1uniprot
Egfruniprot
Itga1uniprot
F2runiprot
F2
Fn1uniprot
Gna12uniprot
Sos2uniprot
Gna13uniprot
Arhgef6uniprot
Cskuniprot
Vav1uniprot
Bcar1uniprot
Crkuniprot
Ptk2uniprot
Mosuniprot
Map2k1uniprot
Mapk1uniprot
Chrm1uniprot
Gng12uniprot
Fgd1uniprot
Cdc42uniprot
Iqgap1uniprot
Arhgef1uniprot
Diap3uniprot
Baiap2uniprot
Enahuniprot
WAS
Arpc5uniprot
Actbuniprot
Rhoauniprot
Rock1uniprot
Grlf1uniprot
Racuniprot
Rac1uniprot
Rac4chemical
Rac3uniprot
Rac2uniprot
Cd14uniprot
Ins2uniprot
Egfuniprot
Fgf1uniprot
Fgf2uniprot
Fgf3uniprot
Fgf4uniprot
Fgf5uniprot
Fgf9uniprot
Fgf14uniprot
Fgf20uniprot
Pdgfbuniprot
Fgf6uniprot
Fgf11uniprot
Fgf16uniprot
Fgf22uniprot
Fgf7uniprot
Fgf12uniprot
Fgf17uniprot
Fgf23uniprot
Fgf8uniprot
Fgf13uniprot
Fgf18uniprot
Pdgfauniprot
Fgf10uniprot
Fgf15uniprot
Fgf21uniprot
Fgfr1uniprot
Fgfr3uniprot
Fgfr2uniprot
Fgfr4uniprot
Pdgfrauniprot
Pdgfrbuniprot
Sos2uniprot
Rrasuniprot
Rras2uniprot
Mrasuniprot
Hrasuniprot
Nrasuniprot
Kras2uniprot
P101-PI3Kuniprot
Pik3r4uniprot
Pik3c2auniprot
Pik3c2b
Pik3c2guniprot
Pik3c3uniprot
Pik3cauniprot
Pik3cbuniprot
Pik3cduniprot
Pik3cguniprot
Arhgef4uniprot
Pik3r2uniprot
Pik3r1uniprot
Pik3r3uniprot
Raf1uniprot
Brafuniprot
Map2k2uniprot
Mapk3uniprot
Mapk4uniprot
Mapk6uniprot
Dock1uniprot
Chrm2uniprot
Chrm3uniprot
Chrm4uniprot
Bdkrb2uniprot
Bdkrb1uniprot
Chrm5uniprot
Rock2uniprot
arhgef6uniprot
Arhgef7uniprot
Actguniprot
Apcuniprot
Apc2uniprot
Pak1uniprot
Pak2uniprot
Pak3uniprot
Pak4uniprot
Pak6
Pak7uniprot
Pfn1uniprot
Wasf2uniprot
Baiap2uniprot
Arpc5uniprot
Actbuniprot
Actguniprot
Abi2uniprot
Nckap1uniprot
Cyfip2chemical
Wasf1uniprot
C3orf10
Tmsb4xuniprot
Vil2uniprot
Pxnuniprot
Git1uniprot
Rdxuniprot
Viluniprot
Slc9a1uniprot
Pip5k2auniprot
Msnuniprot
Pip5k1auniprot
Pip5k1buniprot
Pip5k2buniprot
Pip5k1cuniprot
Diap1uniprot
Pfn1uniprot
Pip5k2c
Pip5kl1
Vcluniprot
Actn1uniprot
Ppp1r12auniprot
Mylkuniprot
Pip5k2auniprot
Limk1uniprot
Myl1uniprot
Cfl1uniprot
Myl3uniprot
Ssh1uniprot
Cfl2uniprot
RGD1304598
Ssh3uniprot
Vcluniprot
RGD:1303089
Myh10uniprot
Actguniprot
Actbuniprot
Growth Factors
Growth Factor (GF)
RTK
RTK
RASuniprot
Rasuniprot
PI3Kuniprot
PI3Kuniprot
Bradykininuniprot
Acetylcholine hmdbid:HMDB00895
Chemotactic factor
LPSCHEBI:16412
Chemotactic factor
PIP3uniprot
Actinuniprot
polymerizationchemical
Focal adhesion
assembly
PIP2uniprot
PIP2uniprot
?
Stabilization
of actin
Lamellipodia
-p
+p
Actin polymerization
stress fiber
Integrin-mediated
cell adhesion
Actomyosinenzyme
assembly contraction
Focal complex
assembly
Integrin-mediated
cell adhesion
stress fiber
Gene Expression
Cadherin-mediated
cell adhesion
Filipodia
MAPK Signaling
pathway
Actin polymerization

GPML Annotator: Rn_Ribosomal_Proteins.gpml

Rps16uniprot
Rps6ka1uniprot
Rps6kb1uniprot
Rpl4uniprot
Rpl5uniprot
Rpl6uniprot
Rpl8uniprot
Rpl9uniprot
Rpl10uniprot
Rpl10auniprot
Rpl13uniprot
Rpl13auniprot
Rpl14uniprot
Rpl15uniprot
RGD:1303019
Rpl18uniprot
Rpl19uniprot
Rpl21uniprot
Rpl22uniprot
Rpl23uniprot
Rpl27uniprot
Rpl28uniprot
Rpl29uniprot
Rpl30uniprot
Rpl31uniprot
Rpl32uniprot
Rpl35auniprot
Rpl36uniprot
Rpl37uniprot
Rpl39uniprot
Uba52uniprot
Rpl41uniprot
RGD:621156
Arbpuniprot
Rplp1uniprot
Rplp2uniprot
Lamr1uniprot
Rps2uniprot
Rps3uniprot
Rps3auniprot
Rps4xuniprot
Rps5uniprot
Rps6uniprot
Rps7uniprot
Rps8uniprot
Rps9uniprot
Rps10uniprot
Rps11uniprot
Rps12uniprot
Rps13uniprot
Rps14uniprot
Rps15uniprot
Rps15auniprot
Rps17uniprot
Rps19uniprot
Rps20uniprot
Rps21uniprot
Rps24uniprot
Rps26uniprot
Rps27uniprot
Rps27auniprot
Rps28uniprot
Rps29uniprot
Fauuniprot
Rpl7uniprot
L18Ae
L12e
L11e
L7Ae
L3e
Rpl24uniprot
Rpl23auniprot
Rpl26uniprot
Rpl27auniprot
Rpl34uniprot
Rpl35uniprot
Rpl37auniprot
Aclyuniprot
S18e
Rps23uniprot
S25e
Large (60S) Subunit
Small (40S) Subunit

GPML Annotator: Rn_RNA_transcription_Reactome.gpml

Tbpuniprot
Gtf2a2uniprot
Gtf2f2uniprot
Cdk7uniprot
Polr1buniprot
Polr3euniprot
Polr3kuniprot
Polr1euniprot
Polr2guniprot
Polr1duniprot
Ccnhuniprot
Mnat1uniprot
Taf5uniprot
Taf7uniprot
RGD:727861
Taf6uniprot
Ilkuniprot
Taf12uniprot
Taf13uniprot
Gtf2buniprot
Gtf2e1uniprot
Gtf2e2uniprot
Gtf2h1uniprot
Gtf2h2uniprot
Gtf2h3uniprot
RGD:1303309
Ercc3uniprot
Ercc2uniprot
Polr1auniprot
Polr2auniprot
Polr2buniprot
Polr2cuniprot
Polr2euniprot
RGD:708567
Polr2huniprot
Polr2kuniprot
Polr2iuniprot
Polr2juniprot
Polr3buniprot
Polr3duniprot
Rpc8chemical
TATA
5
3
3
5
5
3
5
3
TATA
5
3
5
3
dsDNA
5
3
5
3
5
3
5
Primary RNA transcript
RNA polymerase IIenzyme
(mRNA, snRNPs)
RNA polymerase Ienzyme
(large ribosomal RNAs)
RNA polymerase IIIenzyme
(small stable RNAs)
cell growth
Gene Regulatory Proteins
(recognize surface DNA geometry)
TFIIDuniprot
TFIIBuniprot
Transcription Initiation Factors (TIFs)
TFIIE
TFIIA
TFIIF
TFIIDuniprot
TFIIBuniprot
TFIIH
TFIIF
TATA
TFIIF
RNA pol II
TFIIH
TFIIE
TATA Box binding
proteinCHEBI:16541
Steps 1) TBP binds TATA box
Steps 2) Association of TIFs and RNA polymerase
Steps 3) DNA melting by association with TFIIH
Steps 4) Transcription elongation by NTPs
Steps 5) RNA elongation with CDT phosphorylation
TFIIA

GPML Annotator: Rn_S1P_Signaling.gpml

Mapk3uniprot
Mapk1uniprot
Mapk6uniprot
Mapk7uniprot
Mapk12uniprot
Sphk1
SK2uniprot
Asah2uniprot
Smpd2uniprot
S1P3 (EDG-3)
S1P2 (EDG-5)
Edg1uniprot
S1P5 (EDG-8)
Plcb3uniprot
Akt1uniprot
Pik3c2guniprot
Akt2uniprot
Akt3uniprot
Gnai1uniprot
Gnai2uniprot
Gnai3uniprot
Racgap1uniprot
GPCRs similar to S1P

GPML Annotator: Rn_Signaling_of_Hepatocyte_Growth_Factor_Receptor_Biocarta.gpml

Itgb1uniprot
Integrin-A
Ptk2buniprot
Pxnuniprot
Ptk2uniprot
Srcuniprot
Ptenuniprot
Pxnuniprot
Ptk2uniprot
SRCuniprot
Ptk2buniprot
Rasa1uniprot
Pik3cauniprot
Gab1uniprot
Ptpn11uniprot
Grb2uniprot
STAT3uniprot
Sos1uniprot
Crkluniprot
Crkuniprot
Rapgef1chemical
RAP-1A
Rap1buniprot
Hrasuniprot
Mapk8uniprot
Map4k1uniprot
Elk1uniprot
Raf1uniprot
Map2k1uniprot
Map2k2uniprot
Mapk1uniprot
Mapk3uniprot
Jununiprot
Fosuniprot
PAK1uniprot
Met
Hgfuniprot
Dock1uniprot
P
P
P
Trancription
Transcription
AP-1uniprot
Transcription
of Cox2
Anoikis
AKT Pathway
Actinuniprot
RHOuniprot
Pathway
RAC1uniprot
Pathway
CDC42uniprot
Pathway
Changes in Cytoskeleton
and Cell mobility
Extracellular
Cytoplasm
Right Click for Comments

GPML Annotator: Rn_Small_ligand_GPCRs.gpml

Cnr1uniprot
Cnr2uniprot
Edg1uniprot
Edg2uniprot
Edg3uniprot
Edg5uniprot
Mtnr1auniprot
Mtnr1buniprot
Ptafruniprot
Ptger1uniprot
Ptger2uniprot
Ptger3uniprot
Ptger4uniprot
Ptgfruniprot
Tbxa2runiprot
Edg6uniprot
Mtnr1cuniprot
Pgd2chemical
Ptgiruniprot
ProstanoidsCHEBI:26347
Melatonin hmdbid:HMDB01389
Platelet Activating
Lysophosphatidicchemical
AcidCHEBI:37527
Cannabinoidchemical
Gq/G11 Pathway
Gq/G11 Pathway
Gi Pathway

GPML Annotator: Rn_Smooth_muscle_contraction.gpml

Prkar1buniprot
Adcy2uniprot
Prkcauniprot
Prkcbuniprot
Prkccuniprot
Prkcduniprot
Prkcl
Prkchuniprot
Prkcmuniprot
PRKCQuniprot
Prkczuniprot
Prkceuniprot
Prkacbuniprot
Adcy6uniprot
Adcy8uniprot
Prkar2auniprot
Prkar2buniprot
Prkacauniprot
Adcy9uniprot
Prkar1auniprot
Adcy3uniprot
Adcy5uniprot
Nppauniprot
Rgs1uniprot
Rgs3uniprot
Rgs4uniprot
Rgs5uniprot
Rgs6uniprot
Rgs7uniprot
Rgs9uniprot
Rgs10uniprot
Rgs11uniprot
Rgs14uniprot
Rgs16uniprot
Rgs17uniprot
Rgs18uniprot
Rgs19uniprot
Rgs20uniprot
Adcy4uniprot
Adcy1uniprot
Rgs2uniprot
Adcy7uniprot
Gabpb1uniprot
Sp1uniprot
Nfkb1uniprot
Ets2uniprot
Igfbp1uniprot
Igfbp2uniprot
Admuniprot
Oxtruniprot
Igfbp6uniprot
RGD:1302973
Nos1uniprot
Crhuniprot
Igfbp3uniprot
Crhr1uniprot
Rln1uniprot
Nos3uniprot
Fosuniprot
Oxtuniprot
Ywhazuniprot
Ywhaeuniprot
Ywhahuniprot
Ywhaguniprot
Sfnuniprot
Ywhaquniprot
Gja1uniprot
Il1buniprot
Il6uniprot
Gnaquniprot
Cmkor1uniprot
Admruniprot
Oxtruniprot
Jununiprot
Pde4buniprot
Pde4duniprot
Camk2duniprot
Ywhabuniprot
Calm1uniprot
Camk2buniprot
Gabpauniprot
Camk2auniprot
Maffuniprot
Lgr8uniprot
Igfbp5uniprot
Cnn1uniprot
Plcb3uniprot
Cnn2uniprot
Myl4uniprot
Myl2uniprot
Itpr1uniprot
Guca2auniprot
Guca2buniprot
Gucy2euniprot
Gucy1a3uniprot
Gprk5uniprot
Gprk6uniprot
Gnb1uniprot
Gnb2uniprot
Gnb3uniprot
Gnb4uniprot
Gnb5uniprot
Gng1uniprot
Gng2uniprot
Gng3uniprot
Gng4uniprot
Gng7uniprot
Gng8uniprot
Gng12uniprot
Gng13uniprot
Gng5uniprot
Gng11uniprot
Atf2uniprot
Atf3uniprot
Creb3uniprot
Atf5uniprot
Atf4uniprot
Atf1uniprot
Creb1uniprot
Gprk2luniprot
Gnasuniprot
Calm2uniprot
Pkiauniprot
Pkibuniprot
Pkiguniprot
Calcauniprot
Crcpuniprot
Calm3uniprot
RGD:1303317
Itpr2uniprot
Itpr3uniprot
Dgkzuniprot
Plcduniprot
Plcg1uniprot
Plcg2uniprot
Plcb3uniprot
Gsto1uniprot
Ryr3
Atp2a2uniprot
Arrb1uniprot
Arrb2uniprot
Cacnb3uniprot
Slc8a1uniprot
Edg2uniprot
Cald1uniprot
Acta1uniprot
RGD:621676
Actbuniprot
Actc1uniprot
Actguniprot
Ramp1uniprot
Ramp2uniprot
Ramp3uniprot
Camk2guniprot
Mylk2uniprot
Ryr1
Atp2a3uniprot
Ryr2
Igfbp4uniprot
Protein Kinase Auniprot
Protein Kinase Cuniprot
TR
TR = Transcriptional Regulation
note: see gene backpages for references
Regulators of G-protein
Signaling
IGFBP
Adenylyl Cyclases
Activation Via CRH and cAMP
PKC inhibitor Protein-1
Pathways of Myometrial Relaxation
Pathways of Myometrial Contraction
cAMP hmdbid:HMDB00058
cGMP hmdbid:HMDB01314
Predicted OT-R
Predicted Cxn43
Ets complex
Pge2chemical
NucleusCHEBI:33252
AP-1 complex
Myometrial Relaxation
Adenylyl Cyclasesenzymeuniprot
PKAenzyme
Myometrial Contraction
PKCenzymeuniprot
PKC inhibitor 1
RGS hmdbid:HMDB00131uniprot
G
bg
bg
DAGuniprot
G
Calcium Mobilization
IGFBP
TR
NO
Transcriptional
CRE-Transcription Factors
bg
G
IP3
Pip2chemical
GRK
GRK
Cell Growth
GPCR Kinaseenzyme
PKA Inhibitors
Regulators
Phospholipase-Cchemical
Camk2
IP3 Receptor
SR
IP3 Receptor
Calmodulinuniprot
Phospholipase-Cchemical
CAM-Kinase 2
beta Arrestin
beta Arrestin
beta Arrestin
Calcium Influx
+
Ca
2+
LPAuniprot
Ca
2+
Na
cAMP hmdbid:HMDB00058
MAPKenzymeuniprot
2+
Mg
ATP hmdbid:HMDB00538
ADP hmdbid:HMDB01341uniprot
Mlck
P
-
ATP hmdbid:HMDB00538
Pi + ADP
RAMPuniprot
RAMPuniprot
Ca++/Calmodulin
Ryr
Ryanodine Receptor (Ryr)

GPML Annotator: Rn_Statin_Pathway_PharmGKB.gpml

Hmgcruniprot
Cyp7a1uniprot
Soat1uniprot
Dgat1uniprot
Ldlruniprot
Lpluniprot
Lipcuniprot
Lcatuniprot
Abca1uniprot
Apoa1uniprot
Apoa4uniprot
Apoc1uniprot
Apoeuniprot
Apoc2uniprot
Apoc3uniprot
Scarb1uniprot
Lrp1uniprot
Mttpuniprot
Cetpchemical
Ptlpchemical
Cell Membrane
Statin hmdbid:HMDB05007
acetylCoA hmdbid:HMDB01206uniprot
Cholesterol hmdbid:HMDB00067
Cholic Acid hmdbid:HMDB00619
Free FA
Cholesterol Ester
PhospholipidCHEBI:16247
Triglycerideschemical
Liver cell
LDL
IDL
VLDL
HDL
Cholesterol hmdbid:HMDB00067
Tissues
Plasma

GPML Annotator: Rn_Steroid_Biosynthesis.gpml


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Cyp17a1uniprot
Hydroxyprogesterone aldolase
Hsd3b1uniprot
Hsd3b1uniprot
Hsd3buniprot
Hsd3b1uniprot
Hsd3b1uniprot
Hsd3buniprot
Hsd3b1uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd3b1uniprot
Hsd3b1uniprot
Hsd3buniprot
Hsd3b1uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd3b1uniprot
Hsd3b1uniprot
Hsd3buniprot
Hsd3b1uniprot
Hsd3b5uniprot
Hsd3b6uniprot
Hsd3b1uniprot
Cyp17a1uniprot
Hydroxyprogesterone aldolase
Hsd3b6uniprot
Steroid-19-Hydroxylasechemical
Steroid-19-Hydroxylasechemical
Hsd17b1uniprot
Hsd17b2uniprot
Hsd17b3uniprot
Hsd17b4uniprot
Hsd17b7uniprot
Hsd3b5uniprot
Hsd3b6uniprot
F13buniprot
Cholesterol hmdbid:HMDB00067
Pregnenolone hmdbid:HMDB00253
Progesterone hmdbid:HMDB01830
17-alpha-OH-Pregnenolonechemical
17-alpha-OH-Progesteronechemical
DHA hmdbid:HMDB00077
Androstenedione hmdbid:HMDB00053
Androstenediol hmdbid:HMDB03818
Testosterone hmdbid:HMDB02998
Estrone hmdbid:HMDB01425
Estradiol hmdbid:HMDB00151
* 3-beta-OH-delta-steroid DH & Steroid isomerase =
** Estradiol-17-beta DH = DHB
To Mineralcorticoid Synthesis
To Glucocorticoid Synthesis
*
*
*
**
Dihydrotestosterone hmdbid:HMDB02961
*

GPML Annotator: Rn_Striated_muscle_contraction.gpml

Myh6uniprot
Myh8uniprot
Acta1uniprot
Actc1uniprot
Tnni1uniprot
Tnnt2uniprot
RGD:621546
Dmduniprot
Vimuniprot
Tnni2uniprot
Tnni3uniprot
Tnnt3uniprot
Tnnt1uniprot
Myl3uniprot
Myh3uniprot
Actn3uniprot
Actn4uniprot
Tmod1uniprot
Myom1uniprot
Des
Tpm4uniprot
Tpm1uniprot
RGD:735102
RGD:621676
Actguniprot
Actn2uniprot
Mybpc2uniprot
Mybpc3uniprot
Myl2uniprot
Myl1uniprot
Myl9uniprot
Myl4uniprot
Neb
Tcapuniprot
Ttn
Titinuniprot
Tnccuniprot
Tnnc2uniprot
Tpm2uniprot
Myosin Light Chain
Myosin Heavy Chainuniprot
Tropomyosinuniprot
Other Structural
M Disk
Z Disk
Z Disk
Myosin Binding
A Model of Triggering of Striated Muscle
Contraction by Ca++
Troponin-Tuniprot
Troponin-Iuniprot
Troponin-Cuniprot
Actinuniprot
Actinuniprot
Myosin Binding Site
(Covered)
Ca
Ca
Myosin Head
Regulatory Proteins

GPML Annotator: Rn_Synthesis_and_Degradation_of_Ketone_Bodies_KEGG.gpml

Bdhuniprot
Acat1uniprot
Hmgcluniprot
Hmgcs2uniprot
3-Hydroxy-butyratechemical
Acetyl-CoA hmdbid:HMDB01206uniprot
Acetoacetyl-CoA hmdbid:HMDB01484
3-Hydroxy-3-methylglutaryl-CoA hmdbid:HMDB01375
Acetyl-CoA hmdbid:HMDB01206uniprot
Pyruvate metabolism
Fatty acid metabolism
Sterol biosynthesis
Acetoacetate hmdbid:HMDB00060
Fatty acid beta-oxidation
Glycolysis
(HMG-CoA cycle)
* pathway-regulated enzymes: HMG-CoA synthase, mt

GPML Annotator: Rn_T-Cell-Receptor_NetPath_11.gpml

Cd3guniprot
Cd3euniprot
Cd3duniprot
Cd3euniprot
Cd5uniprot
Ptpn6uniprot
Ptk2buniprot
Nck1
Slauniprot
Sykuniprot
RGD1561386
Pik3r1uniprot
Pik3r2uniprot
MGC125004
MGC108827
Gab2uniprot
Shc1uniprot
PRKCQuniprot
Vav1uniprot
RGD1563421
RGD1560049
Ptpn3
Ptpn12uniprot
Map2k1uniprot
Mapk1uniprot
Prkd2uniprot
LOC500449
Ptpn11uniprot
MAP3K1uniprot
Ptprh
Map2k2uniprot
Mapk3uniprot
RGD1565941
Vav2uniprot
Stat1uniprot
Stat5auniprot
MAPK7uniprot
Jak3uniprot
Sh2d3cuniprot
Bcl10uniprot
Pak1uniprot
Scap1
Scap2
SOS2uniprot
Dbnluniprot
Rasa1uniprot
Ptpn22uniprot
Crkluniprot
Ctnnb1uniprot
Cblbuniprot
SHBuniprot
Srcuniprot
Ptk2uniprot
Akt1uniprot
Cd4uniprot
Cd8auniprot
Sh3bp2uniprot
Stat5buniprot
Cd2uniprot
Rap1auniprot
Lyn
Rac2uniprot
Cd3zuniprot
Cd3zuniprot
Fynuniprot
Map4k1uniprot
Muc1uniprot
Tubb5uniprot
FCRL3
RGD1562071
CARD11uniprot
Waspipuniprot
Nfam1uniprot
Def6chemical
WAS
Grapuniprot
Grap2uniprot
Lcp2uniprot
Arhgdibuniprot
Crkuniprot
DTX1uniprot
Nedd9uniprot
Rapgef1chemical
Pstpip1uniprot
Latuniprot
Grb2uniprot
Sos1uniprot
Plcg1uniprot
Pxnuniprot
Arhgef7uniprot
Txkuniprot
Khdrbs1uniprot
Norpchemical
Unc119uniprot
Tuba4uniprot
Itkuniprot
Dnm2uniprot
Dlgh1uniprot
Creb1uniprot
Crebbpuniprot
arhgef6uniprot
Git2uniprot
Vaspuniprot
Enahuniprot
Evluniprot
Cdc42uniprot
RGD1563421
Lcp2uniprot
Nck1
Ptprcuniprot
Sh2d2auniprot
WASF2uniprot
Abi1uniprot
PAG1uniprot
Rasgrp2
Cd2apuniprot
Homer3uniprot
Cebpbuniprot
Ppp3cbuniprot
Cabin1uniprot
Nfatc2uniprot
Itpr1uniprot
Ywhaquniprot
Jununiprot
Jununiprot
Fosuniprot
Cishuniprot
Dock2uniprot
Ripk2uniprot
RGD1562795
Acp1uniprot
LNKuniprot
Stk39uniprot
Ptprjuniprot
Hdac7auniprot
Stat5auniprot
Stat5buniprot
RGD1562795
Hdac7auniprot
Brafuniprot
TRA@
TRB@
Zap70uniprot
Lckuniprot
Abl1uniprot
Antigen
Molecular association
Methylationchemical
Glycosylation
Autophosphorylationchemical
Demethylationchemical
Translocation
Cytoplasm
Endoplasmic reticulum
Endosome
Palmitoylationchemical
Phosphorylationchemical
CY->NU
CY->NU
CY->PM
NU->CY
D
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
Accession Number: NetPath_11
ER
CY
EN
Acetylationchemical
Deacetylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
EC
Extracellular
Golgi apparatus
GO
Mitochondrion
MT
NucleusCHEBI:33252
NU
Plasma membrane
PM

GPML Annotator: Rn_TGF-beta-Receptor_NetPath_7.gpml

Tgfb1uniprot
Tgfbr1uniprot
Tgfbr2uniprot
Smad2uniprot
Dab2uniprot
Madh7uniprot
SMURF1uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfb2uniprot
Arrb2uniprot
Tgfb3uniprot
Tgfbr1uniprot
Tgfbr2uniprot
Smad3uniprot
Strap
Smad6uniprot
Tgfbr2uniprot
Tgfbr3uniprot
Tgfb1uniprot
Acvrl1uniprot
Sparc
Sdc2uniprot
Cd44uniprot
Ap2b1uniprot
Smad4uniprot
Zfyve9
Daxxuniprot
Fkbp1auniprot
Fntauniprot
ERBB2IPuniprot
Gipc1uniprot
Pik3r1uniprot
Ctnnb1uniprot
ENGuniprot
Cavuniprot
EIF3S2uniprot
Axin1uniprot
Snx6uniprot
Vdruniprot
Prkar2auniprot
Prkar1buniprot
Tcf8uniprot
Tgifuniprot
RGD1304977
Pik3r2uniprot
Pard3uniprot
Hgsuniprot
Tgfbr1uniprot
Tgfbr2uniprot
Tgfbr2uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfbr1uniprot
Tgfb1uniprot
Tgfb3uniprot
Tgfb2uniprot
Tgfb2uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfb1uniprot
Tgfbr2uniprot
Tgfbr3uniprot
Tgfbr3uniprot
Tgfbr2uniprot
Tgfb3uniprot
Tgfb3uniprot
Lef1uniprot
Hdac1uniprot
RGD1563119
MEF2Auniprot
Runx2uniprot
Mycuniprot
Sp1uniprot
Nup153uniprot
Smad2uniprot
Nfycuniprot
Snip1uniprot
Zfhx1buniprot
Foxh1uniprot
PCAFuniprot
Ep300
Cdc27uniprot
Skiluniprot
Esr1uniprot
Smad4uniprot
Smad3uniprot
Rbx1uniprot
Cul1uniprot
Dvl1uniprot
Foxo3a
Tp53uniprot
Trp73
RGD1561926
CRI2
STAMBPL1uniprot
Foxo1auniprot
Atf2uniprot
Cited1uniprot
Junduniprot
Fosuniprot
RBL1uniprot
Anapc10uniprot
Anapc1uniprot
Anapc4uniprot
Cdc27uniprot
Cdc16uniprot
CDC23uniprot
Anapc2uniprot
Anapc5uniprot
Anapc7uniprot
E2f5uniprot
Hnf4auniprot
E2F4uniprot
Anapc1uniprot
Anapc2uniprot
Anapc5uniprot
Anapc7uniprot
Cdc27uniprot
Cdc16uniprot
CDC23uniprot
Anapc4uniprot
Jununiprot
Smad3uniprot
SKIuniprot
Ar
Ctcfuniprot
Atf3uniprot
Esr1uniprot
Ets1uniprot
Axin2uniprot
RGD1561201
Junbuniprot
Fosbuniprot
Trap1uniprot
Stk11ip
Stk11uniprot
Sumo1uniprot
Dcp1auniprot
Cops5uniprot
Mapk14uniprot
Map3k7uniprot
Madh7uniprot
SMURF1uniprot
Yap1uniprot
Map2k6uniprot
Map2k3uniprot
Smurf2
Madh7uniprot
Smurf2
Strap
Snx6uniprot
Snx1uniprot
Snx2uniprot
Snx4uniprot
CDK2uniprot
Ccne1uniprot
TFDP1uniprot
Smad3uniprot
Tcfdp2chemical
Cdkn1auniprot
Nfyauniprot
Nfybuniprot
Foxg1uniprot
Crebbpuniprot
Ncoa1uniprot
Fzr1uniprot
Rbl2uniprot
Ppp2r2auniprot
Anapc10uniprot
Rock1uniprot
Cdc25auniprot
MAP3K7IP1uniprot
Xpo1uniprot
Hspa8uniprot
Rock1uniprot
Rbl2uniprot
E2F4uniprot
E2F4uniprot
E2F4uniprot
RBL1uniprot
Kpnb1uniprot
Smad3uniprot
Kpnb1uniprot
Smad3uniprot
Tcfdp2chemical
Tcfdp2chemical
Smad4uniprot
Smad4uniprot
Dcp1auniprot
Smad2uniprot
Smad2uniprot
Rb1uniprot
Rb1uniprot
Mapk8uniprot
Cdk6uniprot
Cdk4uniprot
Ccnd1uniprot
Prkcduniprot
Prkccuniprot
Prkcb1uniprot
Rb1uniprot
Pias1uniprot
Miz1uniprot
Ubc2e
Ube2d1uniprot
Ube2d3uniprot
Skp1auniprot
Btrcchemical
Rbx1uniprot
Cul1uniprot
Camk2auniprot
Camk2duniprot
Camk2guniprot
Camk2buniprot
E2f5uniprot
Skp1auniprot
Cul1uniprot
Rbx1uniprot
Btrcchemical
Smad3uniprot
RBL1uniprot
Smad4uniprot
Smad3uniprot
E2F4uniprot
E2f5uniprot
TFDP1uniprot
RBL1uniprot
Smad4uniprot
E2F4uniprot
TFDP1uniprot
Smad3uniprot
E2f5uniprot
E2f5uniprot
E2f5uniprot
RBL1uniprot
Cdc2auniprot
Ccnb2uniprot
Mapk14uniprot
Mapk8uniprot
Gene Symbol
Hoxa7uniprot
NU -> CY
NU -> CY
NU
CY
CY
NU
CY
NU
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
CY
NU
CY
NU
CY
NU
CY
NU
CY
NU
CY
NU
NU
CY
NU
CY
CY
NU
NU
CY
NU
CY
CY
NU
CY
NU
NU
CY
NU
CY
NU
CY
NU
CY
CY
NU
Receptor
Ligand
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
D
Reaction through unknown mechanisms/molecules
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Sumoylationchemical
Desumoylation
Ubiquitination
Deubiquitination
Activationchemical
Inhibitionchemical
Recruitment
Control
Translocation
CY
Cytoplasm
EC
Extracellular
EN
Endosome
ER
Endoplasmic reticulum
GO
Golgi apparatus
MT
Mitochondria
NU
NucleusCHEBI:33252
PM
Plasma membrane
Accession Number: NetPath_7; cellmap:7

GPML Annotator: Rn_TGF_Beta_Signaling_Pathway.gpml

Tgfbr3uniprot
Enguniprot
Tgfbr2uniprot
Tgfbr1uniprot
Fkbp1auniprot
Bambiuniprot
Ifnguniprot
Tgfb1uniprot
Bmp4uniprot
Tnfuniprot
Egfuniprot
Stat1uniprot
Madh2uniprot
Smad1uniprot
Nfkb1uniprot
Tgfb1uniprot
Inhbauniprot
Bmp4uniprot
Smad6uniprot
Madh7uniprot
Smad5uniprot
Madh9uniprot
Smad1uniprot
Madh2uniprot
Madh3uniprot
Madh4uniprot
Mapk3uniprot
RASuniprot
Tgfbr1uniprot
Tgfbr2uniprot
Sara
Noguniprot
Fstuniprot
Ltbp1uniprot
RGD:1303119
Thbs1uniprot
Wnt1uniprot
Lifuniprot
Tnfuniprot
Catnbuniprot
Jak1uniprot
Mapk9uniprot
Spp1uniprot
Sip1uniprot
Runx2uniprot
Runx3uniprot
Lef1uniprot
Stat3uniprot
Jununiprot
Tfe3uniprot
Fast
QAZ
P300uniprot
Crebbpuniprot
Tgifuniprot
SNO-N
SKIuniprot
Serpine1uniprot
Fosuniprot
ligands:
Co-smads
Repressors
CofactorsCHEBI:23357
Rsmads
R-Smads
CofactorCHEBI:23357
Accessory receptors
TGFb
Co-Smads

GPML Annotator: Rn_TNF-alpha-NF-kB_NetPath_9.gpml

Traf6uniprot
Flnauniprot
Psmc3uniprot
Reluniprot
Nfkb1uniprot
Rp1huniprot
Ikbkguniprot
LOC299827
TBKBP1
Traf2uniprot
Traddchemical
Psmd7uniprot
Psmd3uniprot
Psmd12uniprot
Nfkb2uniprot
Psmd13uniprot
LOC310877
Psmd1uniprot
Rpl30uniprot
RELBuniprot
Smarcc1uniprot
Cdc37uniprot
RPL6uniprot
Smarca4
Hdac1uniprot
Hdac2uniprot
Kcnq1uniprot
Kpna3uniprot
Psmb5uniprot
Faf1uniprot
Psmc1uniprot
Stat1uniprot
Fadduniprot
Psmc2uniprot
Papolauniprot
BCL3uniprot
RGD1562602
IQGAP2uniprot
Ddx3xuniprot
Glg1uniprot
Usp11uniprot
BCL7Auniprot
Gsk3buniprot
Smarcb1uniprot
TRAF1uniprot
LOC299827
Cops3uniprot
Hdac6uniprot
SMARCC2uniprot
Unc5clchemical
Pkn1uniprot
KPNA2uniprot
Kpna6uniprot
TAB3uniprot
Pias3uniprot
PEG3uniprot
Cavuniprot
Gtf2iuniprot
TXLNAuniprot
Map3k3uniprot
Ywhaguniprot
Gab1uniprot
PFDN2uniprot
Ywhabuniprot
Ywhaeuniprot
Ywhahuniprot
Ywhaquniprot
Ywhazuniprot
TNFAIP3uniprot
Tnip1uniprot
Tnip2
Akt2uniprot
Chukuniprot
Akt1uniprot
Srcuniprot
Rnf25uniprot
Nfkb1uniprot
Relauniprot
Fbxw11
Csnk2a1uniprot
Csnk2a2uniprot
Csnk2buniprot
Ripk1uniprot
CASP10uniprot
Casp8uniprot
Traf3uniprot
Birc2uniprot
Birc3uniprot
Ptk2uniprot
Cflaruniprot
Casp3uniprot
Nfkbiauniprot
Cul1uniprot
Skp1auniprot
Btrcchemical
RGD1309571
Relauniprot
ASE1uniprot
Nfkbibuniprot
Lrpprc
RGD1561988
Mtif2uniprot
Nkiras1uniprot
Nkiras2uniprot
Pdcd2uniprot
Rpo1-4uniprot
Rpo1-2uniprot
POLR1Duniprot
POLRY2H
RGD1564685
Ikbkbuniprot
RGD1309922
Ikbkguniprot
Chukuniprot
Rasal2
Praf1uniprot
Rpo1-1uniprot
Slc35b2uniprot
Nfkbiauniprot
COMMD1uniprot
Mcm5uniprot
Mcm7uniprot
Sumo1uniprot
Ikbkapchemical
Hspcbuniprot
Zfp216uniprot
Crebbpuniprot
Fkbp5uniprot
Hspcauniprot
Ptpn11uniprot
Map3k14uniprot
Fbluniprot
Rpl4uniprot
KTN1uniprot
Rpl8uniprot
Rps11uniprot
RPS13uniprot
TRAF5uniprot
Azi2
Ikbkeuniprot
Tank
MAP3K1uniprot
Wdr68uniprot
Ube2iuniprot
Map3k8uniprot
Map3k3uniprot
Map2k5uniprot
Mark2uniprot
Rps6ka5uniprot
Nfkbiz
Usp2uniprot
Nsmafuniprot
Gnb2l1uniprot
NALP4uniprot
Cradduniprot
Casp2uniprot
RGD1563614
Akap8uniprot
Actl6auniprot
PPP1R13Luniprot
Dpf2uniprot
Ripk3uniprot
Ripk2uniprot
Pebp1uniprot
Nr2c2uniprot
Nr2c2uniprot
MAP3K7IP1uniprot
Map3k7ip2uniprot
Alpluniprot
Tnfrsf1auniprot
Tnfuniprot
Dapuniprot
Fancd2uniprot
Birc2uniprot
Traf2uniprot
Ripk1uniprot
Traddchemical
Tnfrsf1buniprot
Birc3uniprot
TRAF1uniprot
Traf2uniprot
Bag4uniprot
Rps6kb1uniprot
Traf4uniprot
Psmd6uniprot
Traipuniprot
Trpc4apuniprot
RGD1565135
Tnfrsf8uniprot
Casp8ap2uniprot
Hspb1uniprot
Tnfrsf1buniprot
Tnfrsf1buniprot
Tnfrsf1auniprot
Tnfrsf1auniprot
Tnfuniprot
Tnfuniprot
Tnfuniprot
Tnfuniprot
Tnfuniprot
Prkczuniprot
Relauniprot
Gene
Gene
Gene
Gene
Prkacauniprot
Ppp2cauniprot
Ube2d3uniprot
HIST3H3uniprot
Ubc2e
Casp7uniprot
Map3k2uniprot
Capn3uniprot
CDC34uniprot
Nfkbiauniprot
RELBuniprot
Relauniprot
Reluniprot
Traf4uniprot
Nfkb1uniprot
Gene Symbol
RGD1304726
NU
Molecule in the pathway
Proteins in a complex interaction
Enzyme complex
Molecular association
(Protein-protein interaction)
Reaction through unknown mechanisms/molecules
D
Autophosphorylationchemical
Acetylationchemical
Deacetylationchemical
Glycosylation
Methylationchemical
Demethylationchemical
Palmitoylationchemical
CY
EC
EN
ER
GO
MT
PM
Phosphorylationchemical
Dephosphorylationchemical
Proteolytic cleavage
Ubiquitination
Inhibitionchemical
CY ->NU
CY ->NU
CY ->NU
CY ->NU
CY ->NU
Receptor
Ligand
Sumoylationchemical
Desumoylation
Deubiquitination
Activationchemical
Recruitment
Control
Translocation
Cytoplasm
Extracellular
Endosome
Endoplasmic reticulum
Golgi apparatus
Mitochondrion
NucleusCHEBI:33252
Plasma membrane
Accession Number: NetPath_9; cellmap:9

GPML Annotator: Rn_Translation_Factors.gpml

Etf1uniprot
eRF3
Eef1a1uniprot
Stnluniprot
Eef1b2uniprot
RGD:1302939
Eef1duniprot
Eef2uniprot
Eef2kuniprot
eIF6uniprot
Eif5uniprot
Pabpc1uniprot
Pabpc2chemical
Pabpc3chemical
Eif5auniprot
Eif4g2uniprot
Eif4euniprot
eIF1uniprot
eIF4A-Iuniprot
eIF4A-IIuniprot
eIF4Huniprot
Eif4buniprot
LOC497887
Eif4ebp1uniprot
Eif4ebp2uniprot
Eif4ebp3uniprot
Eif2ak1uniprot
Prkruniprot
Eif2ak3uniprot
Eif2b1uniprot
Eif2b2uniprot
Eif2b3uniprot
Eif2b4uniprot
Eif2b5uniprot
Eif2s1uniprot
Eif2b4uniprot
Eif2s3uniprot
Eif2s3yuniprot
LOC302697
Eif3s1uniprot
Eif3s2uniprot
RGD:735178
Eif3s4uniprot
Eif3s5uniprot
Eif3s6uniprot
RGD:1303255
Eif3s8uniprot
Eif3s9uniprot
Eif3s10uniprot
AUG
mRNACHEBI:33699
Guanine Nucleotide Exchange
Recruitment of 43S
scanning
Cap Binding Complex
43S Pre-initiation Complex
Recruitment of 60S subunit
and first peptide bond
60S Subunit
40S Subunit
Pre-initiation Complex
Translocation
Binds aminoacyl-tRNA
Terminationchemical
Elongation
Initiationchemical
m7G
AAAAAAAAAAAAAAA

GPML Annotator: Rn_Triacylglyceride_Synthesis_BiGCaT.gpml

Gpd1uniprot
Gykuniprot
Gpamuniprot
Gnpatuniprot
Agpsuniprot
AYR1uniprot
Agpat1uniprot
Agpat2uniprot
Agpat3uniprot
Agpat4uniprot
Agpat5uniprot
Ppap2auniprot
Ppap2buniprot
Ppap2cuniprot
Dgat1uniprot
Gk2
Dgat2uniprot
Mgat1uniprot
Mgat2uniprot
Mgat3uniprot
Lpluniprot
Lipeuniprot
Lipcuniprot
Lipfuniprot
Pnpla2chemical
Dihydroxyacetonephosphate hmdbid:HMDB01473
Glycerol hmdbid:HMDB00131
Glycerol-3-phosphate hmdbid:HMDB00126
Fatty Acyl CoA
See Fatty Acid Synthesis MAPP
Lysophosphatic Acidchemical
Dihydroxyacetone phosphate hmdbid:HMDB01473
Fatty acyl CoA
acyldihydroxyacetonephosphatechemical
See Fatty Acid Synthesis MAPP
Phosphatic acidchemical
Only 1 of these enzymes is needed
DiacylglycerolCHEBI:18035 CHEBI:18035
Only 1 of these enzymes is needed
Triacylglycerolchemical
Fatty Acyl CoA
MonoacylglycerolCHEBI:17408 CHEBI:17408
Degradation
Path

GPML Annotator: Rn_Tryptophane_Metabolism_KEGG.gpml

2.6.1.27
1.4.3.2
Indo
Cyp2j4
Asmtchemical
Hrmt1l2uniprot
Aanatuniprot
Indo
Mdm2uniprot
Maobuniprot
Ddcuniprot
2.6.1.27
Ddcuniprot
Indo
2.6.1.27
1.13.11.17
1.7.3.2
1.14.16.-
3.5.1.49
3.5.1.9
1.13.11.23
1.14.16.3
Acat1uniprot
Hsd17b10uniprot
Echs1uniprot
Gcdhuniprot
LOC360975
1.2.1.32
Acmsduniprot
Haaouniprot
Kynuuniprot
1.14.13.9
Kynuuniprot
Kynuuniprot
Tdo2uniprot
4.1.99.1
Tphuniprot
Wars
1.13.99.3
Cat
Aadatuniprot
Aadatuniprot
1.10.3.4
Maobuniprot
1.13.11.-
1.5.1.-
Dhcr24
1.13.11.10
1.3.1.18
1.14.99.2
1.13.12.3
Ddcuniprot
Maobuniprot
4.1.1.43
1.2.3.7
Aldh3a2uniprot
2.1.1.47
1.1.1.110
Cyp7b1uniprot
Afmiduniprot
Aldh3a2uniprot
Aox1uniprot
1.2.1.-
Dd5uniprot
Hrmt1l2uniprot
Hrmt1l2uniprot
Maobuniprot
4.2.1.84
3.5.1.4
3.5.5.1
3.2.1.147
1.1.1.190
1.1.1.191
Abp1uniprot
2.1.1.49
LOC368066
3.5.99.5
Cyp1a1uniprot
Cyp1a2uniprot
Cyp2a3auniprot
Cyp2a1uniprot
Cyp2a2uniprot
Cyp2c40uniprot
Cyp2d26uniprot
Cyp2e1uniprot
Cyp19a1uniprot
Cyp1b1uniprot
Cyp3a3
Cyp2cuniprot
Cyp2b15uniprot
Cyp2c7uniprot
Cyp2f2uniprot
Cyp4f2uniprot
Hadhscuniprot
Aldh1a2uniprot
Aldh1a1uniprot
Aldh2uniprot
Aldh1a4uniprot
Aldh9a1uniprot
Aldh1a2uniprot
Aldh1a1uniprot
Aldh1a4uniprot
Aldh2uniprot
Aldh9a1uniprot
4.1.1.-
Mdm2uniprot
Mdm2uniprot
Ube3auniprot
Ube3auniprot
Rnf25uniprot
Rnf25uniprot
Asmtchemical
Gcdhuniprot
Nicotinate and nicotinamide metabolism
PhenylAla, Tyr and Trp biosynthesis
Glycolysis / Gluconeogenesis
Benzoate degradation via hydroxylation
Benzoate degradation via hydroxylation
6-Hydroxykynurenatechemical
4,6-Dihydroxyquinoline hmdbid:HMDB04077
4-(2-Amino-5-hydroxyphenyl)chemical
5-HydroxykynurenamineCHEBI:28715
5-HydroxykynurenineCHEBI:2076
5-Hydroxy-N-formylkynurenineCHEBI:2065
N-AcetylisatinCHEBI:16050
N-AcetylindoxylCHEBI:15363
Indoxyl hmdbid:HMDB04094
2,3-DihydroxyindoleCHEBI:17828
2-Oxoglutarate hmdbid:HMDB00208
Oxaloacetate hmdbid:HMDB00223
5-(2’-Carboxyethyl)-4,6-dihydroxypicolinatechemical
5-(2’-Formylethyl)-4,6-dihydroxypicolinatechemical
5-(3’-Carboxy-3’-oxopropyl)chemical
5-(3’-Carboxy-3’-oxopropenyl)-4,6-dihydroxypicolinchemical
7,8-DihydroxykynurenateCHEBI:17508
7,8-Dihydro-7,8-dihydroxykynurenateCHEBI:17109
Acetyl-CoA hmdbid:HMDB01206uniprot
Kynurenate hmdbid:HMDB00715
4-(2-Aminophenyl)-2,4-dioxobutanoate hmdbid:HMDB00978
L-Kynurenine hmdbid:HMDB00183
Formylkynurenine hmdbid:HMDB01200
Indole hmdbid:HMDB00738
2-FormylaminobenzaldehydeCHEBI:18033
3-IndoleglycolaldehydeCHEBI:15976
Indole-3-acetamideCHEBI:16031
5-HydroxyindolepyruvateCHEBI:27597
5-Hydroxychemical
L-Tryptophan hmdbid:HMDB00929
C00332
C01144
C00877
C00527
2-Oxoadipate hmdbid:HMDB00225
2-Aminomuconate hmdbid:HMDB01241
2-Aminomuconate hmdbid:HMDB01241
Quinolinate hmdbid:HMDB00232
2-Amino-3-carboxymuconatechemical
3-Hydroxyanthranilate hmdbid:HMDB01476
Xanthurenicchemical
4-(2-Amino-3-hydroxyphenyl)chemical
4,8-DihydroxyquinolineCHEBI:28883
3-HydroxykynurenamineCHEBI:27421
3-Hydroxy-chemical
IsophenoxazineCHEBI:17293
2-AminophenolCHEBI:18112
Cinnavalininatechemical
L-Tryptophanyl-tRNAchemical
3-(2-Aminoethyl)chemical
5-Hydroxyindoleacetaldehyde hmdbid:HMDB04073
5-Hydroxyindoleacetate hmdbid:HMDB00763
5-Methoxytryptamine hmdbid:HMDB04095
Formyl-5-hydroxykynurenamineCHEBI:28736
N-Acetylserotonin hmdbid:HMDB01238
Melatonin hmdbid:HMDB01389
6-Hydroxymelatonin hmdbid:HMDB04081
Formyl-N-acetyl-5-chemical
IndolepyruvateCHEBI:17640
Indolelactate hmdbid:HMDB00671
3-MethylindolepyruvateCHEBI:28549
6-HydroxyindolelactateCHEBI:27524
Indole-3-acetate hmdbid:HMDB00197
Indole-3-acetaldehyde hmdbid:HMDB01190
Tryptamine hmdbid:HMDB00303
5-Methoxyindoleacetate hmdbid:HMDB04096
5-HydroxyindoleacetylglycineCHEBI:27631
Indole-3-ethanol hmdbid:HMDB03447
3-Methyldioxyindole hmdbid:HMDB04186
2-Formaminochemical
Indole-3-acetaldoximeCHEBI:28311
GlucobrassicinCHEBI:29028
3-MethoxyanthranilateCHEBI:20109
8-Methoxykynurenatechemical
Anthranilate hmdbid:HMDB01123
Anthranilate hmdbid:HMDB01123
3-IndoleacetonitrileCHEBI:17566
Formylanthranilate hmdbid:HMDB04089
N-Methylserotonin hmdbid:HMDB04369
N-Methyltryptamine hmdbid:HMDB04370
(Z)-5-Oxohex-2-enedioatechemical
methoxykynurenaminechemical
-1H-indol-5-olchemical
-L-tryptophanchemical
-2,4-dioxobutanoatechemical
benzoylacetatechemical
-2,4-dioxobutanoatechemical
-4,6-dihydroxypicolinatechemical
L-kynurenine hmdbid:HMDB00183

GPML Annotator: Rn_Unsaturated_Fatty_Acid_Beta_Oxidation_BiGCaT.gpml

Acadluniprot
Hadhauniprot
Hadhbuniprot
Dciuniprot
Acadluniprot
Hadhauniprot
Hadhbuniprot
Acadmuniprot
Decr1uniprot
Dciuniprot
Linoleoyl-CoA hmdbid:HMDB01064
Acetyl-CoA hmdbid:HMDB01206uniprot
cis,cis-3,6-Dodecadienoyl-CoACHEBI:28002
trans,cis-Lauro-2,6-dienoyl-CoACHEBI:28387
4-cis-dexeboyl-CoAchemical
Acetyl-CoA hmdbid:HMDB01206uniprot
2-trans-4-cis-decadienoyl-CoACHEBI:29119
3-trans-decenoyl-CoACHEBI:29126
trans-dec-2-enoyl-CoACHEBI:10723
See Beta Oxidation 2 MAPP

GPML Annotator: Rn_Urea_cycle_and_metabolism_of_amino_groups_KEGG.gpml

Cps1uniprot
Glud1uniprot
LOC303563
Pycsuniprot
2.7.2.8
2.6.1.11
1.2.1.38
Pycsuniprot
2.3.1.35
Otcuniprot
Ass
Oat
Pycr1uniprot
Arg1uniprot
Odc1uniprot
Srmuniprot
LOC363469
Asluniprot
3.5.1.5
1.2.1.46
1.5.99.1
Gatmuniprot
6.3.4.6
3.5.1.54
3.5.1.59
3.5.2.14
3.5.4.21
3.5.3.3
Gamtuniprot
3.5.2.10
2.7.3.1
Ckmuniprot
2.6.1.69
3.5.1.16
Acy1chemical
Arg2uniprot
Ckbuniprot
Pycrlchemical
LOC363469
Glutamate metabolism
Ala and aspartate metabolism
Pyrimidine metabolism
Pro metabolism
Nitrogen metabolism
Amino acid metabolism
D-Arg and D-ornithine metabolism
Citrate cycle (TCA cycle)
Arginine metabolism
Purine metabolism
NH3CHEBI:16134
CarbamoylCHEBI:33100
L-Glutamate hmdbid:HMDB00148
N-Acetyl-glutamate hmdbid:HMDB01138
L-Glutamylchemical
N-Acetyl-L-glutamate hmdbid:HMDB01138
N2-Acetyl-L-ornithineCHEBI:16543
N-Acetyl-L-glutamate hmdbid:HMDB01138
L-Aspartate hmdbid:HMDB00191
L-Citrulline hmdbid:HMDB00904
L-Ornithine hmdbid:HMDB00214
(S)-1-Pyrroline-5-carboxylate hmdbid:HMDB01301
L-Glutamate-chemical
L-Proline hmdbid:HMDB00162
C03406
Spermine hmdbid:HMDB01256
Putrescine hmdbid:HMDB01414
Spermidine hmdbid:HMDB01257
Arginine hmdbid:HMDB00517
Fumarate hmdbid:HMDB00134
Urea hmdbid:HMDB00294
Formate hmdbid:HMDB00142
Formaldehyde hmdbid:HMDB01426
Urea-1-carboxylateCHEBI:15832
CO2CHEBI:16526
Sarcosine hmdbid:HMDB00271
N-MethylhydantoinCHEBI:16354
N-CarbamoylsarcosineCHEBI:15737
Creatine hmdbid:HMDB00064
Creatinine hmdbid:HMDB00562
Guanidinoacetate hmdbid:HMDB00128
creatine-P hmdbid:HMDB01511
Phosphoguanidinoacetate hmdbid:HMDB03705
5-semialdehydechemical

GPML Annotator: Rn_Wnt_NetPath_8.gpml

Wnt3auniprot
Wnt3uniprot
Wnt1uniprot
Wnt2uniprot
Lrp6uniprot
Wnt4uniprot
Sfrp1uniprot
Lrp5uniprot
Axin1uniprot
Gsk3buniprot
Lrp6uniprot
Dkk1uniprot
Fzd9uniprot
Dvl1uniprot
Ror2uniprot
Fzd5uniprot
Wnt7auniprot
Fzd2uniprot
Lrp1uniprot
Wnt5auniprot
Arrb2uniprot
Prkcauniprot
Prkcb1uniprot
Prkccuniprot
FZD7uniprot
Magi3chemical
Fzd4uniprot
Vangl2uniprot
Mapk8uniprot
Map3k7uniprot
HIPK2uniprot
RGD1561602
MYBuniprot
Fzd1uniprot
Cxxc4
Csnk1duniprot
FRAT1uniprot
Tcfe2auniprot
Tcf4uniprot
Pias4uniprot
Sumo1uniprot
DVL2uniprot
Rhoauniprot
Daam1uniprot
Csnk1euniprot
Nkd1
Brd7uniprot
Dab2uniprot
Ctnnb1uniprot
Ep300
Fhl2uniprot
Csnk2a1uniprot
Csnk2a2uniprot
Csnk2buniprot
Apcuniprot
Csnk1a1uniprot
Arrb1uniprot
LOC503000
Cdc25cuniprot
Cdc2auniprot
Ppp2cauniprot
Dvl3uniprot
Map1buniprot
Nr5a1uniprot
Ctbp1uniprot
Ctbp2uniprot
Pax2uniprot
Mapk8ipuniprot
Tbpuniprot
Axin2uniprot
SOX1uniprot
Sall1uniprot
Akt1uniprot
Apcuniprot
BCL9uniprot
Pin1uniprot
Camk2auniprot
Camk2buniprot
Camk2guniprot
Camk2duniprot
Jupuniprot
Rac1uniprot
Smad3uniprot
Sfrp2uniprot
Axin1uniprot
Btrcchemical
Tcfap2auniprot
Arrb2uniprot
Runx2uniprot
Mark2uniprot
Cul1uniprot
Skp1auniprot
Smad4uniprot
TAX1BP3uniprot
Cdh1uniprot
Ruvbl1uniprot
FRAT2uniprot
Dlgh4uniprot
Dlgh2uniprot
Dlgh1uniprot
Ctnnb1uniprot
Gsk3buniprot
Dvl1uniprot
Apcuniprot
Lef1uniprot
Lef1uniprot
Apcuniprot
Map3k7uniprot
Apcuniprot
Cdc2auniprot
SMT3H2uniprot
Senp2uniprot
Csnk2a1uniprot
Csnk2a2uniprot
DVL2uniprot
Dvl1uniprot
Btrcchemical
Ccnd1uniprot
CRYBB2uniprot
Jununiprot
Mapk9uniprot
Fzd4uniprot
Fzd1uniprot
LOC500430
Axin1uniprot
SOX9uniprot
Wnt1uniprot
Wnt1uniprot
Wnt1uniprot
Wnt2uniprot
Wnt1uniprot
Wnt3auniprot
Mapk3uniprot
Mapk1uniprot
Raf1uniprot
Wnt4uniprot
Akt1uniprot
Fzd1uniprot
Fzd1uniprot
MGC112790
Fzd6uniprot
Ctnnb1uniprot
Molecular Association
Translocation
Phosphorylationchemical
Autophosphorylationchemical
Sumoylationchemical
Desumoylation
Activationchemical
Inhibitionchemical
Acetylationchemical
Ubiquitination
Dephosphorylationchemical
Plasma membrane
PM
Cytoplasm
CY
MT
NucleusCHEBI:33252
CY->NU
CY->NU
NU->CY
CY->NU
CY->NU
CY->NU
CY->PM
CY->PM
CY->PM
D
PM->CY
D
D
D
CY->PM
Receptor
Ligand
Gene Symbol
Molecule in the pathway
Proteins in a complex interaction
Enzyme Complex
(Protein-protein interaction)
Reaction through unknowm mechanisms/molecules
D
Accession Number: NetPath_8; cellmap:8
Demethylationchemical
Methylationchemical
Palmitoylationchemical
Glycosylation
Deacetylationchemical
Golgi apparatus
Endoplasmic reticulum
Complex formation
Deubiquitination
Control
Recruitment
Proteolytic cleavage
Extracellular
Mitochondrion
Endosome
EN
EC
NU
ER
GO
D
D
D
D

GPML Annotator: Rn_Wnt_Signaling.gpml

Prkcauniprot
Prkcduniprot
Prkceuniprot
Hint1uniprot
Prkchuniprot
Prkczuniprot
Csnk1euniprot
Plauuniprot
Jununiprot
Fosl1uniprot
Ccnd3uniprot
Ccnd2uniprot
Ccnd1uniprot
Mycuniprot
Tcf1uniprot
Apcuniprot
Gsk3buniprot
Axin1uniprot
Pafah1b1uniprot
Rhoauniprot
Mapk10uniprot
Mapk9uniprot
Fzd2uniprot
Fzd3uniprot
Fzd6uniprot
Fzd9uniprot
Ldlruniprot
Wnt1uniprot
Wnt2uniprot
Wnt2buniprot
Wnt3uniprot
RGD:628850
Wnt7auniprot
RGD:621463
Fzd1uniprot
Fzd5uniprot
Wnt5auniprot
Wnt4uniprot
Fzd4uniprot
Dvl1uniprot
Catnbuniprot
Ppp2r5euniprot
Ppp2r5cuniprot
Frat1uniprot
Racgap1uniprot
Apoptosis
Cytoskeleton
Phosphorylatedchemical
B
-Cateninchemical
P
NucleusCHEBI:33252
Transcriptional Activation
-Cateninchemical
B
Recruitment to Unknown
Ubiquitin Conjugating Enzymeenzyme
Ubiquitin Tagged
Frizzled Ligands
26S Proteasome Degradation