ID Gypsy-27_PSo-I repbase; DNA; PLN; 13592 BP. XX AC AAQY01000828; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_PSo_; KW Gypsy-27_PSo-LTR; Gypsy-27_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-13592 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000828; Positions 14146 555. XX CC Positions [8003-8509] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 543..2969 FT /product="Gypsy-27_PSo-I_2p" FT /translation="MAKRVKSAVPATPAKSSGTRNETSVRSGSSFSTPTTD FT RMESIDERSVSYDTAIDSSDAKEDDEDDDWDVRTAMSETSEAAVGSTGRSG FT GSRSITRDLSDTFKDMPGPEPAYDADDGATEGFKPSVTVGGATPKPVGTRP FT PLNGDTPAANKVLGRCLDLMKTKSEWMQLFSPKQVRQTIWMDLGGALATPI FT NSTSTRQVAQNTVDLLRAMGCEPQILPTEAALASWTPTAAATALTKWRKKL FT RNAFGVADVSSRGPTMLRSTSEAVDPLTVPLPATPRKGATDDGVFATKGEA FT SPYMQDSHMVTPRSTDRCERLARENEASFATPGTRGATGRRSGRRYDLQDD FT SSDSDDDLRSDYYEGDLPSEWTRQVRELSATDNQSSTPKLEIATHLPLANI FT KPFYGTRDKSEHSMQWLRTFIYEMKGTHAPPNEWCMRFELKLRDGALHWCR FT QLPRKTRRTWKLLSEAFIKYYCSKFSQSAKARYYSAKREDKEHVCDYLNRL FT NGYARNAGVQFENGGRDAKDHVDHYLVTCDDRNLEDRLCHVRVKSIHDLED FT MINDILRHRDRKSNRESSFRHSRSQDDGRRRDARSNEDSRGGYRRERRYHD FT EDRRERRRRDNRRRNDRSEDDRRRDRRDGSPYQSRVTLVDALADVMAEWNV FT GGSVGARNEAPYAPRRDAEANEDYFEDERQYSDDQRSDEDSDADYDSDGST FT GHVAAANDAERRAAAEGTFARSDNRRFRNGGGPSNRERDGRRQYGPCAACG FT SPSHSVHFCYRRCKLCKQVHDAGRCEALHELTKLLKSKVDKKDLSLELQSL FT VYGSHLN" FT CDS 4814..8650 FT /product="Gypsy-27_PSo-I_1p" FT /translation="MHAMVAEGSVEGDDTVNDVSEHVANEIELTDYAQELA FT FLPDLTEASETTLDYSGQNVQSDELSVKQQTDLVDVLKSHEKILIASGNAL FT PPPAYGVVCDINIQGHAPIKQKARRTPLRFLGKLYELVKGLLKAGLISFSD FT SPWASPIVIVLEKNGVDIRLCIDYKLVNAITEIMEYAMPLVDDLLTDMEAY FT LWFCSLDAASGFWAIMMTERARKISAFVCALGHFEWLRMPFGLKNAPMIYQ FT RMIDNALWGFVQPTGEWFKFSERMRLAEEHDKEAHAGVNEASTGTAKPFRT FT KFEADRDNSLGKGAVAELVNSPIANMFANGEPADSSLTPVFSRRSFVDDIC FT FGAETFESCLATLGRLLARFEECRISISITKSIFVQSKVDFLSHEVSAEGI FT RPDDKMLAGVTEFPFPSTRKGMQSFLGALNYYSRFIQDFVVYGAVLYQLKD FT EDFQPGGDLTAAKHSFAMLQQKVSAAPILRHFDREKEVHVMLFANEWALSS FT TLMQEHEGKLHPVRFCGRVLKDAEMNYHPAEKEVLALLLILKVCYTQLVGQ FT RIRVYTRFSTLDWVHKSKTLFGRATQFAVLLSPWHLLVERVKETDCSFAQL FT LQAGLTNFVDLDKSLALVTPRTRGSPTTRLDPHLLYARLPRSYRGFVMSFD FT GSAKTEKNGGYGSCSWILWKLPEWTVVLVASAYLENTTVNLAEYTGMNNGV FT SAALQHGADDLVVVGDSRLAIQQALGVIACRKESLLQQLSHHQELTAKLRS FT VKYLHVVREFNAAADSLASETLECKESTVVSSDDRVLELMKLNRIAEVIYE FT AADGCVVEDIPSANTVWAVVVSAKPRSKNFFDFVRRETDRRRQNETEPGRV FT AVMTRRQTRAKEKHVRFADEVSVTDQGDAFHRVDANGVPNESQNEAEASPL FT RAETSPAPPNAEDIDPLVVQEERRRRIASAQDEELRWSNLKAVLRGDDAKI FT GYRAARDAWKMADQFVLSEDDVLYYTRTSRRSSDGEQAELKMRLVVPTTMI FT QEVLQSCHDSLEGGHQGITRRLHRAARDYYWIGQYADVVKLVKACPDCSTS FT KSRPQFRGYSPGNILAERSFQLVSMDFVIPLPKSRRGNTALLLFQCSFTGF FT VMGKAMSDTTALFVAQAFEECVYRRFGAPSLIRHDRDPRFMSEVFHAFAEM FT MQSRSRATLIYRPQANGQQERSVKTIMQSVRVYAEDPLQQDWDEIAERLIF FT AINNSRDTTRKETPFYLVHGWDAQSTLKAMSSSLKRGFGCQTDALAWRREV FT NRQQETALRMAKEYQAAE" XX SQ Sequence 13592 BP; 3136 A; 3686 C; 4236 G; 2534 T; 0 other; gcgccaagag ttggcgtggc cggagaggca ggaacggtat tagagtatcg ttcggtatat 60 atttgtggga ttagagtatc cctgagtgta ttagtctacc taccgaggtt ttaccttggt 120 ccccctgtat aaggcctaac acgccggtac ccttcctttc tgagggactg cagtggggtt 180 gcgcgaaagc gctacatagt atcctagcct tagctcgtgg ctagtggtac aggtttttgg 240 gttaaccgaa gctgcacaga ggcgcttgaa accgacccgg tgtaagggat cgttcctggt 300 cttcaggttt tgatccaata agcgcttacc tttgcgggtt agcgtgttgt tggtgtctct 360 aatacctttt ggtagaggag gattttagtg gaattaccac agcacaactg gtgccgcgac 420 ccgggattgg tgtgaccttc tgtgtgtctt ggttgttgta ggtctttacc cccaacgagc 480 gaagaggaga agaagaagaa gaagagaagc gaagaagaag aagaagaaga agaagagaga 540 agatggcgaa gagagtcaag tcagcggtac cagcaacgcc ggccaagtcg agtggaacgc 600 gcaacgagac ttcggtgcgc tccggaagct cattctcgac cccaacgacg gatcggatgg 660 agtcgattga cgagcgttcg gtgagctacg acacggcgat tgattcctcg gacgccaaag 720 aagatgacga agatgatgac tgggatgtcc ggacagcgat gtccgagact tcggaagctg 780 cggttgggtc gacaggtcgc agtggaggat caaggtcgat tacccgcgac ctctccgaca 840 cgttcaagga catgccgggc cccgagcccg cctacgacgc ggatgacggc gccaccgagg 900 gcttcaaacc ctcggtgacg gtaggagggg caacccccaa gccggttggc actcgtcctc 960 ccctcaacgg ggataccccg gcggccaaca aggtcctagg ccggtgccta gacctgatga 1020 agaccaagag cgaatggatg cagttgttct ccccgaagca agtccgccag accatctgga 1080 tggacctcgg aggggcgttg gctacgccga tcaactcaac gagcactcgg caagttgcgc 1140 agaatactgt ggacctcctg cgagctatgg ggtgcgaacc ccagatcctc cccacggagg 1200 ctgcgctcgc gagttggacg ccgaccgccg ctgccacggc gttaaccaag tggaggaaga 1260 agctgcgtaa tgcctttgga gtggcggacg tcagttcgcg agggccaacg atgcttcgtt 1320 cgacctcgga ggcagtagac ccgttgacgg tcccgctacc agcgacccct cggaagggag 1380 ccactgatga cggtgtcttt gcaactaagg gcgaagcctc gccgtacatg caagactcgc 1440 acatggtaac accacgatct acggaccgtt gtgaacgtct ggctagggag aacgaggctt 1500 cattcgccac gcctggcacg cgcggagcga ccggtcgtcg gtccggccga cgttacgacc 1560 tccaagatga ttcgtcggac agcgacgacg acctcaggtc cgactactac gaaggggacc 1620 taccgagcga atggacacgt caggtgcgcg agctaagcgc gaccgacaac cagagctcaa 1680 ccccaaagct cgagatcgcc acgcatttgc ctctcgccaa catcaagccg ttctacggaa 1740 cgcgcgacaa gagcgagcac tccatgcagt ggctccgaac gttcatctat gagatgaagg 1800 gaacgcatgc accacccaac gagtggtgta tgcggttcga acttaagctc agggatggag 1860 ccctgcactg gtgtcgccag ctcccacgca agacaagacg cacgtggaag ttgctgagcg 1920 aggcgttcat caagtactat tgctcgaagt tttcccagtc tgcgaaggct cggtactact 1980 cggccaagcg ggaagacaag gaacacgttt gtgactacct caaccggctc aacggctacg 2040 ctcgcaacgc cggtgtgcaa tttgaaaacg gtggtcgtga cgcgaaggac cacgtggacc 2100 actacttggt cacgtgtgac gaccgaaact tagaagaccg tctgtgccac gtccgggtca 2160 agagcatcca tgacctcgaa gacatgatca acgacatcct gcgtcaccgt gaccgcaaat 2220 cgaaccgaga atcgtcgttc cgccactctc ggagtcaaga tgatggacgt cgacgcgatg 2280 cgaggtcgaa cgaggattct cgtggtggct accgccgcga acgacgctac cacgacgaag 2340 accgtcgcga acgacgtcgc cgtgacaacc gccgccgcaa cgaccgcagt gaagacgacc 2400 gtcgccgtga ccgacgcgat ggatcgccgt accagtcccg agtcactttg gttgacgcgc 2460 tggccgatgt gatggcggaa tggaacgtcg gaggctcggt cggtgcacgc aacgaggctc 2520 catacgctcc ccgacgtgat gctgaggcga acgaggatta cttcgaggat gagcgccaat 2580 actcggacga ccaacgctcg gacgaggatt cagacgctga ttacgactcg gatgggtcta 2640 ccggacatgt cgctgctgct aacgatgctg agcgcagggc cgcagccgaa ggaacgttcg 2700 ctcggtctga taaccgacgc ttcaggaacg gaggaggccc gtccaaccgt gaacgagatg 2760 gtcgacgcca gtatgggccg tgtgccgcgt gcggaagccc gtcccactcg gtgcacttct 2820 gctaccggcg gtgcaaactg tgcaaacagg tgcacgacgc tgggaggtgt gaagcactcc 2880 acgagctcac caagctcctg aagtccaagg tcgacaagaa ggatctgtca ttagagctgc 2940 aaagcctggt gtatggaagc catttaaact aggcagcccg ccaactgaaa ctgggttggt 3000 cccaatcggg ctgccacagt tagctgagcc tgctgttgat gcggactatc tgttcgcgtt 3060 cacgggcgaa agcaaacggc ctgacgacct gaagaacaat gaacgtgtga aaccgacgga 3120 aaatggagag aaccgggacg caagtctcgt tgcgattggt attgatgaag atgatgatga 3180 tgaacgtgat agacacccga ccaaggcttt gatcacaagt ctagcccaga taagggggcc 3240 acctcggaac ctcgttcggg cggtgaaatt actgcccggt gagagactgg ggtggtggtc 3300 gtcccaacga tacgacaaga ggaagcgaat gagggctttg gtcaatggcg cagtggacga 3360 cgcgcgaacg aggatactcc ttgacactgg agcgaatgtt agcgtgattt ctgccagctt 3420 cgccaagcgg ctacgtgtgc gagaagtccg ggattacgga cgaagtctcg aagtccgcgg 3480 catcaaccca ggggtgatgg agacccggcg acgggcgctc gtcaagatca ccctcggatg 3540 ggagcaggtc tacgaatttg aaatgtggat aatgaatcac agtgccgggg tggatgtggt 3600 ccttgggatg gacttcatga tcccggctgg aatccggctg gatctatttc atggcaccgc 3660 acgccttccg gacgaggtca tggtaccact gctaaagtcg cagagtgctg aagatgacga 3720 accttacggc acgtagcctt cgtgtgagcc gatcgaggat ttgtacgtac ccggtcgcga 3780 gtggcgagag tttcgactgc cgcgccagcg gctacctcgt tcggagtacg atgtgtgggt 3840 acgacgcaca ggcaagctcg tgccgaccgt aacgaggttt cgacgggggc agccgacgtg 3900 gatacggctc accaatatta cgaccacagc ggaacagtgc gccaagcatg actccgtggt 3960 gctgtgggta ccgcatggtg aactaccgcg agagaccggc tacgcgaggt tgaattctaa 4020 caagtacaaa gagtggcagg tgttggccta ttcaacgagt cgtgatgaga ctctgcaagg 4080 acgagaacgt cgtctctacg agcaatagtt ggctgaacag ccgcctgcgg tcgagcgccg 4140 aacttacccg acgccgcgaa agatcctgcc gaggccaccg gatgcaccgc catggccaga 4200 aggccgtcaa caagctccgt tggatgatga gtactcgtca cccgatgtac atggctacga 4260 cgacgacccc aaggtcagtg aaggctcggt cgatgtcgct cgagctgata aaaccgatgt 4320 ggatcgtgct ggtgggttga acgatggttc ggacgacgag gccagcgcgt cgtatgactc 4380 ggacgtaccc ggagactcgc cgcctagccg agcgggttgc ctgcccgtga atccgaacag 4440 tggtgctgac tccaccggcc agggagcgac atacgcctcg gttgaggcat cggaagccag 4500 tgatgagctg agtgatggtg acagcgtgac gaacgacggt tcggaggatg accgcgacgt 4560 ggtagcagtg gccgagacaa ctacatggga tgtcctgcca acagggaccg ctgcgtccag 4620 cctggagcca gaggaaacgt cggctgcggt gtgtagtagc gaagtcgact ggggtgaaca 4680 cgacccaggg cctaacgacg ttcctactga agccggaacc tccaccgctg acgccgacac 4740 tgaattccat gattccgatc taagtgcgat cgacgacccc gagcagctac tggaggcgac 4800 ctatatctcg gtcatgcatg ccatggttgc agaagggtct gtcgaaggtg atgacaccgt 4860 gaacgacgtt tcggagcacg tcgcgaacga gattgagctt accgactacg cgcaagagct 4920 ggcgttcttg ccggacctaa ccgaagcgtc agagacgaca ctggactact cggggcaaaa 4980 cgtccagagt gacgaactca gcgtgaagca gcagacggac ctggtcgatg tgcttaagag 5040 ccacgagaag atcttgattg cgagcggcaa cgccctgccg cctccagcct acggtgtcgt 5100 gtgtgacatc aatatacagg ggcacgcgcc aatcaagcag aaggctcggc ggaccccgct 5160 tcgcttcctc ggtaagctgt acgaattggt gaagggtctg ttgaaggccg ggcttatctc 5220 cttctcagac agcccatggg cgtcgccaat cgtcatcgtc ctggagaaga atggggtgga 5280 tatccgcctg tgtatcgact acaaactcgt taatgcgatc accgagatta tggagtacgc 5340 catgcccttg gtggatgact tgctgacgga catggaggcg tacttgtggt tttgctcgct 5400 tgacgccgct agcggcttct gggccattat gatgaccgaa cgagctcgga agatctctgc 5460 tttcgtctgc gcactggggc acttcgaatg gttgcgtatg cctttcggcc tgaagaacgc 5520 accgatgatc tatcaacgca tgattgacaa cgcgctttgg ggcttcgtcc aaccgacggg 5580 agaatggttt aaattctcgg agcgcatgcg tctagctgaa gaacatgaca aggaagctca 5640 tgctggggtg aacgaggctt cgactggtac ggcaaagcca ttccggacca agttcgaggc 5700 cgaccgagac aactcgcttg gtaagggagc tgtagccgaa ctggtcaaca gccctatcgc 5760 caacatgttc gccaacgggg agcccgctga ctcctcgttg acaccagtat tcagtcgccg 5820 gtcattcgtg gatgatatct gtttcggtgc cgagactttc gagtcgtgct tggcgacgct 5880 aggccgattg ctggcacggt ttgaagagtg ccgtattagt atcagcatca cgaagagcat 5940 ctttgtgcag tccaaggtag acttcctgtc ccacgaagtc tcagcagaag gtatccgacc 6000 ggacgataag atgctggctg gggtgaccga gtttccgttc ccgtcaacga ggaaaggaat 6060 gcagtccttc cttggggcac tgaactatta cagtcgcttc atccaagact tcgtggtcta 6120 tggagcagtg ctgtaccagc ttaaggacga ggacttccag cccgggggtg acctcaccgc 6180 ggccaagcac agcttcgcga tgctccaaca gaaggtttcg gcagcaccga tactacgaca 6240 cttcgaccgg gagaaggagg tgcatgtcat gttgttcgcc aacgagtggg ctctaagttc 6300 cacgttgatg caagagcacg agggcaaact acaccccgtt cgcttctgcg gacgtgtttt 6360 gaaggatgct gagatgaatt atcacccggc cgagaaagag gtcctcgcgc ttctgctgat 6420 actgaaggtg tgttatactc aactcgttgg acagcgaatc cgggtctaca ctcggttttc 6480 gacactcgac tgggtccaca agtccaagac attgttcggt cgggctaccc agttcgccgt 6540 cttgctgtcg ccgtggcacc tgttggtcga acgagtcaaa gaaaccgact gttcgtttgc 6600 tcagctactt caagccggct tgacgaactt cgttgacttg gataagtcac tggcgttggt 6660 cacaccccgg acacgagggt caccaactac tcgtttggac ccgcatctgc tctacgcacg 6720 cctaccgcgg tcctaccgag gcttcgttat gtcgtttgac gggtctgcga agaccgagaa 6780 gaacggtgga tacggcagct gctcgtggat actatggaag ctaccagagt ggacagtagt 6840 gcttgttgcg agcgcttacc tcgagaacac cacggttaac ctcgctgagt acaccgggat 6900 gaacaacggc gtctctgctg cattacagca tggagccgac gatctagttg tcgttggcga 6960 ctcgaggctc gcgatccagc aagccctagg ggtgatagcc tgtcggaagg agtcattgct 7020 gcaacaactc agccaccacc aagaactcac ggccaagctt cggtcggtga agtacctgca 7080 tgtggtgaga gagtttaacg ctgcggccga ctctctggca agcgagactc tcgagtgcaa 7140 ggagtctacg gtggtatcgt cggacgaccg agtattagag ctgatgaagc tgaaccgtat 7200 cgctgaagtc atctacgagg ctgctgacgg ctgcgtcgtc gaggacatac cctcggccaa 7260 cacagtatgg gccgtggtag tttctgccaa acctcgtagc aagaattttt tcgattttgt 7320 gcgaagagaa accgaccgca gacggcagaa cgagactgaa cccggacgcg tagctgtgat 7380 gaccagacgt caaacgagag caaaggagaa acacgtccgg tttgcagatg aagtctcggt 7440 caccgatcag ggagacgcat ttcaccgagt agatgccaat ggtgtgccga acgagtctca 7500 gaatgaagca gaagcttcac cgctgcgtgc cgagacgtca ccagccccac cgaacgcaga 7560 agacattgac ccgctggtag tacaggaaga acgccgaagg agaatcgcct ccgctcaaga 7620 tgaagagtta cggtggtcga atctgaaggc agtgctccgg ggagatgatg cgaagattgg 7680 atacagagca gcacgagatg catggaaaat ggcggaccaa tttgtgttga gcgaggacga 7740 tgtgctatat tacacaagaa cgagccgtcg ttcaagtgac ggcgagcaag ccgagttgaa 7800 gatgagactc gtggtgccca caacaatgat ccaagaggtc ctgcaaagct gtcatgactc 7860 acttgaaggc ggtcatcaag gtattacccg taggctacat cgagcggcga gagactatta 7920 ctggatcggc cagtatgccg atgtggtgaa actcgttaag gcgtgccctg attgcagtac 7980 aagtaagagc cgacctcagt tccgcgggta ctcgccaggg aacattctag ccgagaggtc 8040 cttccaacta gtctctatgg acttcgtgat accgctaccg aagagtcgcc gtggcaacac 8100 ggctctcctg ctgttccaat gctcgttcac gggattcgtg atgggcaaag ccatgtctga 8160 cactaccgcc ttattcgttg cgcaagcttt tgaggagtgt gtctaccgac gttttggagc 8220 accgtccttg atccgtcatg accgagatcc tcgatttatg agcgaggtct tccacgcctt 8280 cgcggaaatg atgcagtctc ggtcgagagc gaccctgatc taccgcccgc aggccaacgg 8340 ccagcaggag agatcggtga agacgatcat gcagtcagtc cgcgtatacg ctgaagaccc 8400 attgcagcag gattgggacg agatcgccga aagactgatc ttcgccatca ataactcccg 8460 tgatacgacg aggaaggaaa ctccatttta cctcgttcat gggtgggatg cacagtcgac 8520 gctcaaggca atgtcctcgt cactcaaacg aggcttcggt tgtcaaactg acgcgctagc 8580 atggcgccga gaggtcaacc gacagcagga aacggccctg aggatggcca aggagtacca 8640 agccgcggaa taggctcgga gagctgaaga gcacaatgca tcacttggaa ggaaggagaa 8700 ggagctacgg caggcgtcgg cgagaataga acctcggtcg accgagcatc gagttcccct 8760 gaccatggtg gagctacagt gacgagaacg aggctttctt tgcagcctgg gagcagagtg 8820 tggctgtaca tggaacgggt tcgaccagga ctgaccaaga aactagccca tcggtggcac 8880 ggaccgttcc gcgagaagaa gaaggtcgac gagtttgcgt atgagttgga attacccgac 8940 cgaagtggat accggttcta cctggtggtg catgtttcac gactcaagtc agtggacgaa 9000 ttcgaaggcc gaccgagggt tcgtttggct cgtggggtca ccgaagacac tcgtcttgac 9060 ttcgacgagg aactactgcc tgaagacagt tttgagccgg accacctgga cggtgagtat 9120 gaagtcgagg ctatcctcga tgaccggaca ccgttgtcaa cgagcactca ccgggccgtc 9180 cgagagttca aggtgaagtg ggtcggctat gacgagccga catgggaacc agcgtccaat 9240 ctctcgtgcg gtggcctcct gtacgattac ctacgccgga agcgaagcga ccgacgtttg 9300 caaatggtcc aggtggccga cgaggagtaa ttctgcgccc caacgaggat tgaactgctc 9360 gcgcgggcaa tccagcccgc gatgtcagac gaacgaggct actggagatg atgattgaac 9420 tgcctgcgag ggctatccag ctcgcagtga cagacgaaga aagttactgg aatctgcatg 9480 ttacgtgtta agtgaacgag tcacgatgga atggagatat cggaatggag ccaggaacaa 9540 cggaagacgc aagcaagcct cggtcaaacc ctcaacagac gaaacaagtg atgatgaagc 9600 aaatgggagg gcgaccgagg cttcggacgc agtgattgcc atggaagtag cacgaacaag 9660 tgcgctcgaa ttcgtggttg agtatggagt tgatgatgaa atgggtatgc aagctgtcga 9720 caccggatat ccgcagcaga ccgggtgtac agttgtcaaa attgggctgt catgcgaaaa 9780 catacccgca acggagctag cgtaagtacg cacggtctcc cgcgaatcaa gtccggtctt 9840 caacgagcat aagcccgatc ttcttgcagg gagaagagac gaagcccggc tgccgcagct 9900 acgaaccaag cctcgtttga ggcagccaca gcggtcgagg gcagagaaga agctctggga 9960 accgcgaccg agtattgaat gcgatgtgcg ttgacgcgag aaaagattac gaaatggaac 10020 gaacaacatg acgttatttt ggattgggat agcacatgca gcgtcaccta aagcgccacg 10080 gacctcggtc gacattggaa aagaacgtga acgaaacggt gaagctggag cggggcctaa 10140 cgaggctaaa tctccatcac agcctgagcc aacacgccca gacttgaccc ggcggcgcta 10200 gaagcttcac ccgacttctg cgtctcctca tcggggcttg gagagcgaga acgacgagcg 10260 tttgcgaact cggccaccca tggaacgacc accatcgaag tctacagaga agattcgacc 10320 acgaccgacg acgccacggt ttcccgagtc gatccgttgg ggacaaacaa cgggacgtcg 10380 ttgcaagggg cgaaagccgt gttgtagggg tggtctgccg gcccttggaa ccgacagtta 10440 cgccacggct cgcgggcatt cacgtccgcc acctcggagg cccagtcgtc ggtagtgggg 10500 acccactcca tcacctcgaa cgagtattac aggtacgacg gctccagcaa aacctcggtg 10560 cggtgctgtg gaggttgtcc gtcgtacgta atggccccat tccacacctt gtggagcatc 10620 tggtctcgca agcgatctgc acgataactg cgctctcggt ggtacttgga ccacgcttgt 10680 cgaagcgcta ggacttgcac gttgcgctga ccgagggtgc tggcgaggtt gtcgatatac 10740 gccttgaccg ctttacccct aatccagtgg cgacgctccc acaaggcgaa accaaggtcg 10800 cccctcttgg tggagtggta ggagtacccc tggaactgcc gccataggcg aacgagaaga 10860 gcccgaccag ttgcacgacg ggatatagcc accgaggatg gaaaacccgt cgtatcgatc 10920 aaacaaggct cgtctgggaa acgctggcgc aacacttgga aggggtgagc aggatccgtc 10980 cacaagccaa actccacgat tccatccact gaactggggg cgaccaagtc gtcctcgaag 11040 acgaggggga cactggcgtt ttggatgaga tgccagcatt ccgacgctcc gggtgccgtg 11100 aaacgcggag ggtagcaaga ccactgagct tacgcgatcc aggagctacg tcggaagcgt 11160 caaccactgc tggggcaatc gacgcaggtc cagccctcgg tgaagctgtc accgttgctg 11220 ttaccatcgc ccgagcgtga acagaggccg accgagtgtg gagtcgactc gggagtggca 11280 cggtggccgc ttgtgaagct acaggaaccc cggtcgcggc agccagagga gaaggagcct 11340 ccgaaggagc gacaggttgc gccaccgagg tttcctctct ttcgtcgggg ccgaacatct 11400 ccaggaacaa cgctgcgcgg tcctcggaag tctcggactc atgaggcgac tcaccgctag 11460 gtgaacggtc tggcgggccg ccagagccct cggtgacccc agcagccgat tctcgagggg 11520 cacggccgac gccggctgta ccagacgaga ctggcgaagg aatggtagtc gccgccgaag 11580 gcgaaacctc ggatggaacc tcgatgacag taccggaagg cttggtagca gaaccttgaa 11640 caccctgagc gctggccgac acccccggaa tctcgccggg ctcaaggtca tcttgtgaag 11700 tgtcgctagg actcataccc cctccaaact ccacgtcaga cgattcctgc tgctgggctg 11760 gggctggcga gggaggcgag gcgcgacggg ccagccgagg atacaagggg acgtctgagt 11820 gttcgtacgg gagaggctga gactccaacc agcttgagcg agccgtcgtt ggacgcacca 11880 tcgaccgagg aggcggggaa atctctcctg atgccgaacg aggactagat ggcgcggcgg 11940 ccgctgcagc cctggccctc aggtcgactg acggtctgcc gaagcgtttg tgaggaggag 12000 actgggatgc cgtattcccg acggaagcag actcggtttg ccgaccccgc ttgcgcgatg 12060 acgaccgggg aaccagcaga agcgcccacc gaagcagcga aagcggacgt agcctcggtg 12120 gactcagcca tcggcacgtc ggtcgtcttg gactcctctc cctcctctga cgaggattcg 12180 tcatggcgtc aactctcgac agtgaccgtc ggtggggaca gcccgagaag attccaatca 12240 atctctgcgg cggagatgcc ggctgaggcc agggccaagg tgtcgacgtc gagtccgtgt 12300 gcggccgagt gccgacgaag gatagaaatc gctcgccgca agctgttgtt ctcgtccgtc 12360 aacgcttgaa tgcgtgcggg gatgacgttt gctcggtcgc ggtcggccaa ctgcttccga 12420 agcctctcca actgagtgtt gtaggtaacg aggcttgcac ttatacgctc gtggagctgg 12480 gtgttccgac gtacagcagc ggccgaatcg gcctcagcaa cgagcgtccg cttctccaac 12540 gactgagtga cgtcagcgtg gtgagcgatg gccgcgttcg cttgcatcaa ctgagcgctg 12600 gcgttgctga gctggacgcg catgtcctgg acgaggtcca gagcttggtc gcactcggag 12660 ttggccgaga cgaggaagta gtccgacttg gtccgcaggt tcatctcttc agcgagttta 12720 tctttggcgt cggagagctc tgcctgcagc cggtcgttct cgcggcggag ggccaccagt 12780 tcatcagcct tcgcaagagg gagacgcgga ggagcaacgg cggcagccag cacctcaccg 12840 acgttagtag cagcttgcag gctgtggtcg agagcagcgt tgactcgagc tggaggtgaa 12900 cgggcaacat ccacgacgag acgagcgagt tccagcatct gctgctcgcc caagacgacc 12960 gctgtcggag gaacctcggc cgggccagca ccagcaccgg cgcgaccccc tacagctgcc 13020 tcgcccccca ccgacgcccc gcgagtttcc aacgtgaccg aaggcgcggg agttggcgac 13080 ggtggagcgc tggcgcttgg cggcggtgtc ggcggcgagt cgggagcctc ttcactggga 13140 actgccggcg agggagtctc ggtcgcccca gcagcagact caggattact tggaggagcc 13200 ggtggagggt caaccgaggt cccggaggcg gcaggaatga gcgtagggtc acctgcaggc 13260 gcggccgggg ctgggggcac agcaccagcg gcgatagggg cgggggcacg cgccgaacga 13320 gcctggcgcg ccggacgacg acccgaagtg tcggtggcga catcaacagc tccctgagat 13380 gatcaagaaa gagatggagt caacaacgag ggtccgaatt acagtgagga gcagcgggag 13440 cgatgaacgt accggtccgg agcactggag agcccgaaga gcagcggcag ccgcgtcggc 13500 gaatgcacgc gacggaggag ccatggagtc gaagaactga acacgcctag acgctcacca 13560 gcgtgggagg ctcgcgtcga ggcgggggca gt 13592 // ID Gypsy-10_PSo-I repbase; DNA; PLN; 6721 BP. XX AC AAQY01000273; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PSo_; KW Gypsy-10_PSo-LTR; Gypsy-10_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6721 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000273; Positions 77175 70455. XX CC Positions [4355-4855] - Integrase core CC 'AAATC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 4406..6001 FT /product="Gypsy-10_PSo-I_2p" FT /translation="MDFVFGLPPDSNGRTGVLVFVDRFSKTVHFVPVAATV FT TAEGSAAHFVDAVFRLHGLPDSIVSNRDPRFTSAFWTELLKLLETQLAMST FT AAHPDTDGQTERANRVVGDVLRSYATSFPSWSAFMPLTEFALNNAEHSSTG FT MTPFFVNSARHPRVPAMLAVGQPTEARVSTLGGGGATSEDSPPAKTPAEPS FT PVNSLASPRFPVTESSANAVTRSQAKKALAAPHRAVTPLADWTERTLIDPA FT GAPATTQQPATTANYAPKSSASPTDHLAVSEFVQQRQAITRFVRDALQAAM FT YRQKENADKRVRKNKTSFRTGDRVLLSTEGIRSSAVTNLGANKLAPRFIGP FT FKVIKVVGDANTLDIPSSLRLHPTFYVGSLKRCHPTDIPTSDHQDSLAGNV FT PEATRDANTHHPSLYRRDGPPPIVDSAGEARWIVDRIVHHEDPSRANGRGR FT NPVRAPRAIPAARRYRVRWLGFPPDEDTWETRAALLRDVPDVVRDYEAKVA FT AAEETTELPAEAEALSERDDGSGSPPQARGGVHRED" XX SQ Sequence 6721 BP; 1263 A; 2127 C; 2039 G; 1292 T; 0 other; cctggtagta cttcgtagtc cttccaacga ccaagaccaa gatgagccaa gtcctgacgt 60 ccggaccttc aggggcaacc ctggagcacg gtgccttccc ccatctcacg cgcattgagt 120 gggaagctct ccatcgcctc gcggcggtgt gttgtcactt cgctgctgag ctcagcgatg 180 ctggaacaac agcgccaagc tgccgaagaa ttcatggaac gcgagcgcgc cgacgcgaat 240 cggcgggtca caactccctc gcgcccctcc aggaacgatg tcgtcaaact ggagacgtcc 300 acctactctg gcatgggtga cgatcggctt ctactgaacc gctggttccg tgagatcgac 360 atcgctatcg cctcgcgcat aatcgaagcg tcggcggcca aggtcaactt cctactctcc 420 cggttgtccg ggaaggccaa ggagtgggcc ctcggcaagc tcgtcgtcga ccagaacgcg 480 ttccctactc tggcgtcgct ccggagtgat ctccggctcg cgttcgagcc gcccaagacg 540 agtcgcgcgt tcgcgcggag ttcttctctc tcaagcaagg caagatgtcc atgcgcgact 600 acgtccagaa acacgacacc ttgcgtcgtg cattgtcacc caccccattg acatggcatt 660 tcaggtgcat gtctttgtgt ttgggatgcg cgaaggaatg acgcggtact gtctcacgag 720 agccgaaccc tcctcgctcg aagaggcatt cgccctcgcg ctccgcgagg actacgtggt 780 ggcggcatcg tacgcgcgcg ctatgccgga cgtctctcgg gtatccgcgc ccgagcccat 840 ggagatcgac gcaattgagg cgtcgggtga tcgacggcgc tcggcttatg gtgggggagg 900 aggtcggagc gctcgtcctc taacttgctt ccgctgccgg aagattggac atcgcgcagc 960 agagtgccgc gcgccagccc cagttctcgc gcacgtcgat gccgacgcta gcccggccgc 1020 ccaaccaaaa aacggccgag gccagtaggt gcggggcgcc ctactggttg gaaggaaggt 1080 ccgggtcctc cggtggcaac ccggccttct agccctcccg tgctatatgc acgttttact 1140 gccaccactg cgagtggcga ctcgaggctg accatcgtca gcctccatgt cgccggcgcc 1200 cgacgtccac tgcgcgcgct cctcgactca ggagcgacaa acaacttctt ccgcgcgtcg 1260 tgtctgtcgg tgcttcctgc gagcgtccgc gtccggaagg gtccgggcga ggtggaagtc 1320 aagcttgcgg atggcaaggc ccaccgcgtc gcgcgacgcg aggtgtccct gccgtacacg 1380 ttcgacggct tccgcagcaa cgacgacttc ctggtgatcg agatgaatta cgcgttcgac 1440 tgcattctag ggatcccgtg gcttgcacgg aatcagccag agattgacta gctggctcgg 1500 tcagtcaagc gtcgacgtgg cttcgacgta cgtgaagtgt tcacgcatct cttggtggct 1560 ccaagagact ggcctcacgt taccgtcgtg gacaagacag ccacgacgca agttgtgcac 1620 agagcgagcg atggccctct ctgcatggca tgtgccgtgc tgttggatga tgatgatgtc 1680 cggatgacat cgcgtggacg cgatgacgga cccgtggtcg agcgacgtgc gctcccacac 1740 agtgagaaca agtcggcggt cgagcatggg ttcccgtcga gctacaagtc ggcggtcgag 1800 catgggatcc cgtcgagcta caagtcggcg gtcgagcgtg ggttcccgtc gcccaatgag 1860 acggcggtcg agcgtgggtt cccgtcgccc actgagacgg cggtcgagcg tggattcccg 1920 tcacaagttg agcaggcggt cgagcatgag tcgctcccgc acaacgatgt tgcggctgag 1980 agcgtgctgt agtcgcgtac cgacggtgtg atcgagcgtg gcctctcaca cctagaggag 2040 ggtgaatcat cgtcgagcga gagcgatgcg tcttcttcga gcacccgctc gaagcgaagg 2100 aagaagtcca agcgacgccg cctgaagccc cgtcgagaac cgtcagcgac tgagaaccca 2160 ccgaaggagt cggtgtgcgc tctcgagtac gtggagggcg ctccacgacg atcgcgcgtc 2220 atcgaagtcg cgagtccgct tcgacccaat cacgcgtctc ccaggactct cctggaagaa 2280 ctttcttcga gacctgaagg caggcgagat cgagcaagtg tgtctgatca ccgaggcggt 2340 cccggtggat acgctgagcg cggtcaaggt cgaggatgcg ccgtcgaggc ccaagcacgc 2400 cgagcccaag tcagcgcgcg aggagcgctt cgcggcgcag tcctgggaag ctctgcgtga 2460 gtccggtaac cccgtgtacg aaaccgcccg cgagtacgcg gacatcttcc ttgacaagat 2520 ccccgctgag ctcccggcga accgaggcgt ccgccacgag atcgacctcg cgcctgcaat 2580 gaggtactgc gtgacgcagc agtggccact tccacgtgac caggtgaagg ccatcgacga 2640 cttcttcgag agccgccgcc gggcaggcca cgtgcgcgaa agcatctcgc cacactccag 2700 cccgaccttt tgcgtcaaga aggcaacggg cgggtggcgc attgttcacg cgttcaacag 2760 gttgaacgat gccaccatac ccgcgcagac gccaattccg cgcaaggaca tggcgctgga 2820 ctctatggcg ggaagcgtga tctacagcgc catcgatctg accgatgggt tctaccagat 2880 actcatgcga gagtgtgaca tacctctcac agcggtaagc actccgagcg gcatgctctg 2940 ggagtggctg gggatgcccc aaagtctgaa gaacgcgccg gccacgttta accgcatggt 3000 ctcccatgtg ctgcgcccgc tccgtgactt cgcaccgagc tacttcgatg atatcttcgt 3060 gcactgtcgc gccgaagatg acctcggcgc tgtcgaagta cacctgaacc acctgcggca 3120 agtcttccag gtgatgaggg agaacaagct ctacgccaac ttgaagaagt gcgtgttctg 3180 tgcaccggag atcccggtgt tgggctgcta cgtgagcaag gatggagtcc gcgccgaccc 3240 tgagaaggtt gagtcaatct gctcttagcc ggcccccacg agtcccactg agcttcgtca 3300 gtggctgggc atggcgaact acttgcacaa gaacaccaag gactacgcga agttaatcca 3360 gccactgtcg tcgctgctga agaaggacat cacgtggtcg tggcgagaag agcaccaagc 3420 cgcatttgac tcggtgaaga ggagtctgtc atccgcccct gttttgatgc tcgcggacga 3480 ttcgaagcca ttccacgccg tctgcgacgc gagcgacttt gccatcgggt gtgccctgat 3540 gcagttcgac gacgagggtc gtgagcgggt gatcagctac tagtcccgcc agctcaagcc 3600 ggcggagagg atctacccag tgcacgacaa ggagctcctc gccatgcgct acgcattggt 3660 caagttcagg gtctacctgc tcggagagca gacgtttgcg gtctacaccg accatgcatc 3720 gctgcggact gcgatgaaat ccccgcatct gtccccgcgc atggtccgct ggctgtcttg 3780 agtacaactt cgtggtgcac tacaagtctg gcaagaacaa tatcctcgcc gacgagctgt 3840 ctcggcgtcc agactacgac tcacgtgaag gcctcgagcg ccaggcagct gacgaagatg 3900 gtgaagacgc gtgtgcgacg tgtgtgacgt cggggttgaa cctgacgagc gtcgccccca 3960 agatgccgct tcgggacgag atcgccgcag cgtacgagcg tgacgcacag tacgccagca 4020 tcctggccca cctccgctct ccaagcgaga cgacattgaa ggctctgtcg cgctcgaccc 4080 gcagccacgt cgagcgatat ctgcttgatg gctccctgct gacgtacacc atcgaccgat 4140 tcgatgcccc gagagtggtg gtgtcgaatg acgaagacct tcgcgcccgg atcatccatg 4200 agtaccactt gagtatgagt accacttggg acgcgaaaag accttcgcgg cggtggcgcg 4260 agacttcttc tggccccact tgtacaagtg ggtgcgcaag tgggtgcgca cttgcgagat 4320 ctgccagcga gtaaagccct cgccgtcgtc gcaggctccg ctgcgccccc ttccggtccc 4380 cacggaagcc tggcgctccg tctcgatgga cttcgtcttc ggtcttccac ccgactcgaa 4440 cgggcgcacg ggagtcctcg ttttcgtcga caggttcagc aagacggtgc atttcgttcc 4500 cgtggctgcc acggttactg cggaagggtc cgcagcccac ttcgtcgacg ccgtcttccg 4560 ccttcatggt ctgcccgatt ccatcgtctc gaatcgggat ccgaggttca cgtccgcgtt 4620 ttggacggag ctgttgaagt tgcttgaaac gcagctggcg atgtccaccg cggctcaccc 4680 ggatacggat ggacaaaccg aacgcgccaa ccgcgtcgtc ggagacgtac tccgcagcta 4740 cgctacgtcg ttcccgagct ggagcgcttt catgcccctg accgagttcg ctctgaacaa 4800 cgccgagcac tcgtcgacgg gcatgactcc gttcttcgtg aactccgcgc gccacccgcg 4860 cgtacccgcg atgcttgccg taggccaacc cacggaggct cgtgtctcta cgcttggtgg 4920 gggaggagct acctctgaag actcaccgcc ggccaagacg ccggcagaac cgtcgccggt 4980 caattcactg gcgtcgccac gcttcccagt gaccgaatca agcgcaaatg cagtgacacg 5040 atcccaagcg aagaaggccc ttgccgcacc gcatcgtgcg gtgacgccgc tcgcagactg 5100 gacagagcga actctgatcg accccgccgg cgctccagcg acgacgcagc aacctgctac 5160 taccgccaac tatgcaccga agtcctcggc gagtcccacg gatcacttgg cggtttccga 5220 gtttgtgcag cagcgtcaag caatcacacg tttcgtgcga gacgcactgc aagccgcaat 5280 gtaccggcag aaggagaatg cagacaagcg tgtacgcaag aacaagactt catttcgcac 5340 gggtgaccgt gtgctactgt ctaccgaagg catccgctcc tccgccgtga ccaacctcgg 5400 tgccaacaag ctcgcgccgc gcttcatcgg cccgttcaag gtgatcaagg tcgtcggcga 5460 cgcgaacaca ctggacatcc cgtcgtcgct gcgtcttcac ccgacattct acgtcgggag 5520 cctcaagcga tgtcatccta ccgatattcc gacctctgat caccaggatt cactggcggg 5580 taatgtaccc gaggctactc gcgacgccaa cacccatcac ccaagcctgt accgtcgcga 5640 tggccctcct ccgattgtcg actcggcggg tgaagcgcgc tggattgtgg accgcatcgt 5700 tcaccacgag gacccatctc gtgcaaacgg gcgtgggcgt aatccagtcc gggctcctcg 5760 cgcgatccca gccgcgcgac gttaccgagt acgctggctt gggtttccac ctgacgagga 5820 cacgtgggag acgcgtgcag ctcttcttcg ggatgtcccc gatgttgttc gtgactatga 5880 ggcgaaggtc gctgctgctg aagagaccac ggagctcccc gcggaagctg aagccttaag 5940 tgagcgtgat gatggaagtg gatccccacc gcaagctcgc ggtggcgttc atcgcgaaga 6000 ctaagaagaa aatccgacga cgaccgccgg actcgaaccg gtgacctccg ccttggtggc 6060 gcagcgttcg accactgcgc tagctgggct tcgagtcccc tctacgacgc tctcgacctg 6120 gtcaagcttg gagcgactgc gcgtggcaag gggcaagagg gattcgcgtg gggcttgaac 6180 ccacgcgtca cagctcagct cggtgagcgc ttgcccacta cgccgcacca ccgatgatcg 6240 ccggtgtcga aggtgtccaa gctggtctcg ctgccacgtc ggttcgggtc gacggttgcg 6300 cgactcttcg tcgggagtta cgtcgaaggg tcgtcgcgaa gagccacgcc acgctgatcg 6360 ccatcctgtg tctcgacact cgccggtctc cgctccgtgc gcatcacagt tgcgcttgtc 6420 gtcaagcgtt ggtgtcgctc cccatgctgc gtcgttgcca cgtccgccct cccttcgggt 6480 gtccgtggat gtccgcagcc acttggggca ctgcgcattg catcggcgtg tgcgccgacg 6540 agacgtcttg gtgtgtgcac acttgctgcg cctgcgtcgt cctgtgtcac tcggtagcgc 6600 gagcgccgtt cctccgccgc ctcggtcgtc catggtgttc ttcgggtgtt cttcgggtgt 6660 tctttcggaa atgtgtcttt tgcgcttacg ttgcgtaagc gcaactttga gaggggggtg 6720 a 6721 // ID Gypsy-44_PIT-I repbase; DNA; PLN; 9197 BP. XX AC AATU01003867; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_PIT_; KW Gypsy-44_PIT-LTR; Gypsy-44_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-9197 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003867; Positions 28958 19762. XX CC Positions [3601-4143] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 499..2286 FT /product="Gypsy-44_PIT-I_1p" FT /translation="MTDSDVLQLIHARSQALVNEFVPDVKSLAHQSLHMDL FT TTDDCDARVFRYFQDFTKIVEENGLQGLIGKTDPSLQGYRDRMKARCRLLI FT ENLQPAVLKEQIQRLVELERRDCKTDDVALFNLILEHAKAQQRFHRLTKES FT GSSRSSQRQPAFSTTGASGPKLSTKAGKDGRRRDITASTERSKGSPKPAKA FT ATPPVDGCLVCHGPHWMRECPTATAAQREEALARYRATKDSSSTVVRSKVV FT KGRESANTVKINNLLDVMFIPDTGAERSVIPSCVVHSLLGLQPDLLIQRLD FT VLVEVVVADGRRLECDCTVEVDLKLNTAAGVVNVPSVTCVVMDSEEEDLLL FT GKDTLNELGINVDDMLAQLANGADFVNDSDDYEVGDTSQDHQLDKDAQGSI FT NAMVADAAANGMAAEQVEELHGVLNQYPDIWKDSLSDGPPAKVEPLRIQLK FT EGTTPIRCKQRKYAPLQRQFIREHVAQLAKNGLVKENRSARWASAVVPVRK FT PGSKDEFRLTIDYRAVNQATVPIAGTMPDVAAVMNSVNGAVAMANFDMKNG FT FWQLPLSEESQEVLSFMTDEGVYTPTRVPQGAMDSALHFQGQMQRVLAT" FT CDS 3253..4485 FT /product="Gypsy-44_PIT-I_2p" FT /translation="MSRLRPLADAEFVYPGSSDIKDAQASASRVSTSLPVV FT EEGGVLVVDHKPWIPTSAKDLLSRIMVVAHCGAQGHRGEAAMVALLADRFF FT VVNRSKKVSQFVRSCLICKHVKGPRQIQRPYGPTFTARTRNQALHWDFTYL FT GDTFGEAKYVLVLKDSLTHFCEVFPCSSPTAYVAAEALIDWYKRYGCPIIL FT ISDQGVHFRNQTVDNFCARLKIERSFSPVYSPWLNGTVERVSRDLLQANLN FT HTPMRSLAGHSPTELFTGLQSPSALDMVVRPAQNGEEILIVDLEDVEPQLA FT KLRLSLEGLHKEVVDIKERKWLADMQKKTGVVCNFDVGDYVLWSKIDQRLP FT NNKLLGQWLGPFCITKALPHAFKVEHLVSGKGYEIQGSRLKYYADADLNPP FT TPNGCTYSRNHVVRTTC" XX SQ Sequence 9197 BP; 2308 A; 2243 C; 2504 G; 2142 T; 0 other; agtccccggt ctcgtgataa agaattcttt cgcttggaag cgttggaacc tctcttttgc 60 gacctcgtgc gcgtcgtcga caaggctgta tctcccttca gtgcgcgtcg ccgacggaag 120 agcaaaaccg gtcggataag tacgactttc cttagaacct aggcaaagtt cgccttaagt 180 tcgctactgc tccttacctt gagatatggt aggcggcagg ttcccattgg acccggacgg 240 agacgtcaac atggacgctg gccctaccgt tccccagcca atttacgaag tcgttccacc 300 acccaagctt gtaagctggg atcatgcctc gctagtgtca tggtaccgtg agtggagcca 360 ctacgtgacc aagatacgtc accgctgcac tgtgactggt gaaatattcg agcgtgtggt 420 aggaacggta aagggcgcta tacagcctga agtgctgcaa tcatctcggc ctacatcctg 480 caacgcccgc tggagtccat gacggacagt gatgtcctgc agcttattca tgctcgcagt 540 caagctctcg tcaatgagtt tgtgcccgac gtgaagtcat tggctcacca atcactacac 600 atggatctga ctacagatga ctgtgatgct cgcgtctttc gctactttca agactttaca 660 aagatagtgg aagagaacgg cctacagggt ctgattggca aaacagatcc gtctctacaa 720 ggatacagag atcgtatgaa ggccaggtgt cgcctgctga tcgagaatct tcagcctgct 780 gttttaaaag aacagatcca gcgtctagtt gagttggagc gccgagattg caagacagat 840 gacgtggcgc tattcaatct catactagag catgccaaag cgcaacagcg ttttcatcgc 900 ctcactaagg agagcggttc gtcgcgtagt tcccagcgtc aacccgcctt cagcacaact 960 ggcgcgtcag gaccaaaact gagcaccaag gctggtaagg atggacgacg ccgcgatatt 1020 acagctagta ccgagaggag caaaggctcc ccgaagcctg ccaaggccgc gacaccgcct 1080 gtggacggtt gtctagtttg ccatggcccc cattggatgc gtgagtgccc tacagccaca 1140 gctgcgcagc gtgaagaagc tctagcccgc tatcgcgcta ccaaggactc gagcagcact 1200 gtggtccgct cgaaggttgt taaaggccgt gaaagcgcaa acactgtgaa gattaataac 1260 cttcttgacg tcatgttcat tccagacacg ggtgctgagc gcagtgtgat cccaagttgt 1320 gtggtacact ctttactggg cctccagcct gacctgctca ttcaacgctt ggacgtccta 1380 gtggaagtag tggttgctga cggccgacga ctagaatgcg actgtacggt cgaagtggat 1440 ctcaaactga acacggccgc aggtgtggtg aacgtgccat ctgtcacatg tgtggttatg 1500 gacagcgaag aagaagacct tttactaggc aaggacaccc taaatgagct gggtatcaat 1560 gtggacgaca tgctggctca attagccaat ggggctgact tcgtgaatga cagtgacgac 1620 tatgaggtgg gagatacctc gcaggatcac caactggata aggacgcaca gggcagcatt 1680 aatgcgatgg tcgctgacgc cgctgctaat ggcatggccg ccgaacaagt tgaagaattg 1740 catggcgttc taaaccagta tccagatata tggaaagata gtctgagtga tggtcctccc 1800 gctaaggtgg agccgctacg cattcagcta aaggaaggca ccactccaat tcgctgcaag 1860 caacgcaagt acgcacccct gcagcggcag tttattcgtg agcacgtggc gcagcttgcc 1920 aagaatggac ttgtgaaaga gaacaggtcg gcacgctggg caagcgcggt cgtccctgtt 1980 cgcaaaccag gatccaaaga tgaatttcgc ctcacaatcg attaccgtgc tgttaatcaa 2040 gccacggtgc caattgctgg taccatgcct gatgtagcag cagtgatgaa cagcgtgaat 2100 ggtgctgtag ccatggctaa ctttgacatg aagaacggat tctggcagtt gccgctctca 2160 gaagagagcc aggaggtgct gtcatttatg acagatgaag gtgtgtatac accaacacgg 2220 gtccctcaag gtgcaatgga ctcagcactc catttccagg gtcaaatgca gcgcgtcttg 2280 gccacttgat tcccaacaat gcacaggtgt ggatcgacga tgtgctttta tatgctaaga 2340 cgatggacga gtttattgat gtcccgcgac gattctttat gctgctacac aggcacaaca 2400 ttaagctcaa cgcgaagaag agcgtcattt tcaagcgtga ggtgacatgg tgtggttcgc 2460 gttatctctg gcgatggtga tcgtcatgat ccgcgccgta tcagtgcatt gacggagctt 2520 ccactgccat cgacagtcgc cgagctgcaa tacttcgtct gtgcatccaa ttggcttcgt 2580 gattctatcg tggattttac gcgtatattc tctccctttc tggctaaact cgatgccgag 2640 aagaagaagg tcggtcggcg caaccgtaac gcactcaatg ttaatatcca atggacggag 2700 cttgagggcg cggccttcag tgcagctgtt gctgccatca aggccacggc catgatgact 2760 tttccagtag aaggagatga cctgtgtatg ttcacggacg caagcctgaa tggatacagc 2820 attgtcgtga cagcagtccg taattgggac ggctcccgac cagccgatga acaagatcac 2880 tcgctggtta tatgtaggtg gtgtttttcg cgacgctcaa cttcattggc ctataatcga 2940 gaaggaggcg tttccgatca tcaaggcctg ctcagatctg gaataccttc tgctgcgtca 3000 gaaaggattt aggctctatt gtgaccatgc caatttcatc tacctattct cgcctacaat 3060 ggatgtcaag caacatgtcc acgatcgtct gcagcgctgg tcgctgcgtc tcctcgggtt 3120 acgatacact atcgagcata tttcagggga gcgtaacttg tgggccgata tcatctctag 3180 gtggctatta cgtgagatgg ttcatgtcct tgctgtccaa acccgtcgcc agactccatc 3240 ggccgtttta acatgtcccg cctaaggccg ctggcggacg ctgagtttgt atacccaggg 3300 tcttcggaca ttaaagacgc acaggcatca gcttctcggg tttctacttc gctgccggtc 3360 gtggaggagg gaggagtgtt ggttgtggac cacaaaccat ggattccgac aagcgctaag 3420 gatctactat ctcgcattat ggtagtggca cactgtggtg cacagggtca cagaggtgaa 3480 gctgctatgg tggcgctact cgccgacaga ttcttcgtgg tgaatcgcag caagaaggtg 3540 tctcaatttg ttagatcgtg tctaatatgc aagcacgtca agggcccccg acagatccag 3600 agaccctatg gccctacttt cacagcaagg acaagaaatc aagcactgca ttgggatttc 3660 acctaccttg gtgacacctt cggcgaagcg aagtatgtgt tggtgctcaa ggactctttg 3720 acacactttt gtgaagtgtt tccatgttcc agcccgacgg cgtatgtggc cgcagaggct 3780 cttatcgatt ggtacaagag atatggatgc ccaattattt tgatttctga ccaaggcgtt 3840 cactttcgga accagactgt ggataacttc tgtgcacggc tcaagattga acgttcattc 3900 tcgcctgtat actcgccgtg gctcaacggc accgtagaac gcgtcagcag agacctgcta 3960 caggcgaatc tcaaccacac accgatgcgt tctttagctg gtcattctcc cactgagctt 4020 tttacaggac tgcagtcacc atctgccctc gatatggtcg ttcgtccggc ccagaatggc 4080 gaagaaattc tgattgtgga tctcgaggac gtggaacctc aactggccaa gctgcggctg 4140 tcgctggagg gattacacaa agaagtcgtg gacattaagg agcgcaagtg gttggcggac 4200 atgcagaaga aaactggcgt ggtgtgcaat ttcgatgttg gagattatgt tctgtggtcc 4260 aaaatcgatc agcgactacc caacaacaag ctacttggcc agtggctggg tccattttgc 4320 attacgaagg cacttccgca cgcgttcaag gtggagcatc tggtgagtgg taaagggtac 4380 gaaatacagg gctcccgtct gaagtattac gctgatgctg accttaaccc cccaacgccc 4440 aacggttgta cgtacagcag gaatcatgtt gtacgtacaa catgttaaaa gttgggctat 4500 tttgttgcaa aatatgggca aacttgagaa tgcacaggtc tggggttgtt gagatcagtc 4560 tctttggcaa taaacaatac agattctccc ctgggttggt ggctgagagc tcatttcgag 4620 aaaagacctg aaggagagac acgtgtgcac gatggccccg cctcgagaaa cacgccgcga 4680 acgccagcag ttcctgcaac gtctggatgg ccgaactgcg cacgaccgag agcgcatcag 4740 gaaggagcat gcggcgtacc tggctggcga acgagaggag gatgctgact tcggagaaga 4800 tccagcacct acacgcagcg cgacagctcg tcctctgctt ccggttccga tcggcaaaga 4860 tgcctgttac gtgcgtgcgc agcgacgttt gatctcgcaa cagcaacgtg ctgtcgccgc 4920 aaagacgttg gcaggctccg gcaagaaacg gttggctgct agtagggact tgagcgacga 4980 tgatgaggac tatgatcccg atcggttcga cgaggaagcg gatgctgatg cagacgatga 5040 gcgactggat gcagcagact ccccagtcaa gacacggccg ccaaagaaga agaagaagaa 5100 gacggccgcg gcgaccccga ccaagaaggc gaccccgacc aagaaggcga ccccgaccaa 5160 gaagccacga aaacccaccg cgtcgcaagt tgctaaggca gcggcaaaag cagcgaagac 5220 agcagctgcc gaatcgcgct gtgaagattc ggcgaatgcc gaggaacaag ggagcatcgc 5280 tttggccgag gccaggaaga gattggaggc gattggtgaa gcgaacaaga agaggagccg 5340 ccaaccaagt gggacaccag agaggtacac catgttttat gctgtcagat actacatgtt 5400 ctcacgaagt gttgttgtac gctgcgcagg tacatacaac atttgggaca tacaacatgg 5460 atacagcgtc gctatgcttt ccctacaacg tcgttatcga caacatgtaa acaacatgaa 5520 cagcagctaa catatattgt ctatcgacag gggttccacc gatcctcaag atacgtcaga 5580 agcaccgtcg cctcgaacgt tgtctgcagc gcctgcgcca cccccgtctc ctgaatgtcc 5640 agctcctgaa tgtccagctc ctgaatgtcc agttgcagca ccagaagacg attggtacgt 5700 ggcaaagtct ttgatgctga ttatgtatac taacgttgtg cgtatcatag tgaaagctca 5760 gcatccattt cccagactcc tgtccccgac gcggcaacct ctacccctgt ttcgccgact 5820 tctgctccag cctcgctgtg ttccgctcca atttcacctg aaagaacgtc ggtctcagcc 5880 tctcctatcg ctgcccccgc tttcgctgac gagtttgatg cgttgaactc tgattgcgag 5940 gaaacagaga ccgagattac gttttacgat gatgatgacg agtggagtcg agcgagaagt 6000 gaaggtgagg gctttgcgtc gggtgaagac tacagtgatg aggacgatag tgaggctgga 6060 tcagatacta tgagtgctga tggagaagca gctggttcga cacagcagtg gagcgtctta 6120 gagaagccgg aaatggttga ttttgtgatg gacgatgcca acatggctgc catgcgagct 6180 aacgggtgga acttaggttc gtgacaatga ggggtgtagc ctccaacata ttctaacatg 6240 atatatgatg tatatacaac atgtagaccc agacaatttc ccgcctgacc aacattaccc 6300 aggattatat tctggggagt atggaccaac cgacgaggta ctggccctga cacactcacc 6360 gctcaagcta ttcttctttt tcatgccgaa gagtttgtgg agacaagttg caaaggaaac 6420 caatcgctac tttgtgcaga acctcacttc acgagtggag cgtatgttca gctcgcagaa 6480 gacacctgcc aagaagtcca aagagtggtt tttgcatcgc gaggccaaga agcgggacgt 6540 caagccgcac gagatactgc aagcgcttgg attactgatg gcaagaatgc tgaaccctca 6600 ccgccgcagg ttacgtgatc attgaggcac taatgcagtg ggagctatcc cacgggggac 6660 gttcaacgat tttttgccgc gaaaccgctt tgaacacatc atgggaaatc ttcacttcac 6720 caacaacgca gacacgagag cagcaactga ccacgcctgg aaagtcaggt ctatcgttga 6780 aacgctgcaa gaaacgtttc cgttgggtta caaaacgccg ccgatcatat catttgatga 6840 gggcgttcta cctctgaaga accggaacaa tcctacgcgt caatatctca aggcgaagcc 6900 tcacaagtgg ggcacaaagc tttttctgac gtgttgtgca gatacttcct actgtatgag 6960 gtgagatgac tgcgagtcct tgcggactcg cgtttttttt tttgaccaag tctatcatgt 7020 tgtatctaat gttgtatgct tgtatgctgt atcctacaac aagaagactt gaggtgtatt 7080 gtggcaaagc gcagcaggtc catgaagtag gcaacgttcc agacagtcag cgatctgcag 7140 atccaaacac cgggccgtca gcagttatcc gaaacttgga agctgtcctg ccaccacccg 7200 aagatgacgt ctatcacatt gtagtgacgg atcgatttta tacgtcagtt caactggcgt 7260 tataactact acataggaat gtctacagta tcggcacgat aatgggtgac aaagtgggct 7320 atcctcagca aattgttgaa aaaaatcgag accgacccaa aagcataccg cacggtacaa 7380 caagaatggc agtggcaaaa gcttgccccc taatgacggc tttagtgtgg tgggatagaa 7440 aacccgtgca attcttgggg actggatcga gccgtgcgat ggaggagtgt cgtacgtata 7500 tgcaagaggt gctgtttcct attcatctaa tcaatgttgt gcttgttatc agagaggcgt 7560 gcacgtggaa cacacggcag acggactgat gtcccttgtc ctgctatgat tcgagactat 7620 cacaaatgga tggggggcgt ggatgtccat gaccagctgc gcctccagcg ttactcgttg 7680 cagttgcaga cttggtgcaa gaaatagtac aagtccatat tcttggggct tgtggatgtg 7740 gcgattgtga atgcgtatat catctttcgt gaggcacata agcgaaatgg tgggtctcca 7800 atgtcgcacg cagaattcct agtggagctt catgcccagc tgcttgctct gaccaagtac 7860 gacttcgatg aaagtgtaag tcctgatgtt gtatctgtat catgttggat aatgctgaca 7920 tattgtatga cccacatgct gtatgttgac agccaagacc acaagagacc gcagctggcg 7980 acgagcttcc acccttgcca cctggccacg aacctcggga atgtcctgag taccagatcg 8040 tgaaaggcgt gcgcaagcgc cggcagcgcc aatgcaaagt gtgcgcaatt ctgaagcgcc 8100 gggtgggaga gcgtcgagcc accaaatact attgcgatgc ctgcagcact tctgataaag 8160 ctcggtacat acgaattcga tatggctgaa acgactacta actgctgctc gttatgtaca 8220 gcatgtatct gtgtactcgt atttggccgc accactatcc tggcaacgct ctgagctgcc 8280 accagatctg gcatcacaag tgggcaaatg gagccaaatg ccccagggcg cgatgtggac 8340 gaggattcca gaatcgcgag gctggaggaa agggtaagcg ccgccgccga agtagtgatg 8400 gagaggagga ggaaggtatt agcgagggga gcgacagcga cagcgtagcg cacgacgacg 8460 acagggaagg tagcgagact gagtgagccg ataactgatg gtggatgaac gtagtgctgc 8520 aatatgtgct ttttcttact gtattcaatt gatgtgtgtt tggtttcgct tttcgttgtc 8580 ttcaaacctc ccggctttgc accggattga taggcttcgt acagtctctt gataaaagat 8640 acatcgacac ctttttttga aacctccatc atgctggatg tacgccatat tcaagcagtc 8700 tgccggtgta tatacaactt tgatctggtg tacatacaac atggtgacgg gatttgcaga 8760 aattgtcttg ttgtgcatgt acaagaaatg tgctcggaat tatacgagac tatagtaaag 8820 tcaagtgttg cacggtttta catgttggat gagtactatg ttggatgatt tgaaataacg 8880 tcaaaaaatg gcttgggcgt tgggggggtt aacatggacg tagagatgat ggagttggtc 8940 acgtcgcaag gtatcgtgct ggatgtggca gctttcgaag atcatcgcta caacaaagaa 9000 ctacagcgct gggagctgtt ggtgaaatgg gctggcctac agcctatcga gaatagctgg 9060 gagagcttta acacgatgca caaggacgtg ccacaagcag tggtcgacta tgttgagtcg 9120 gttggagacg acctactgcg tgctcaacta cagtagctac aagcgagacg cgcgagctgc 9180 agctttgtgg ggctgtg 9197 // ID Gypsy-27_PSo-LTR repbase; DNA; PLN; 541 BP. XX AC AAQY01000828; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_PSo_; KW Gypsy-27_PSo-LTR; Gypsy-27_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-541 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000828; Positions 554 14. XX SQ Sequence 541 BP; 133 A; 129 C; 149 G; 130 T; 0 other; tgtggtattg gaaagtggca gtttccaacg ttgttgaccc gccagcccga caatcaagtt 60 caatcaaggg gcgatcaagg cgaggtcaag cgagagacgg agatggctgc ttctgattgg 120 atgatgacat tatcctcggt agagtgacag gcagtggccg aagcctcgtc ggggcctaat 180 agaaccccga acgaggcttc atggtaccca cttttaggta cagatgcatt tagttacgta 240 cttcggccgc acttattagt gtagccgcgg tcgtcatttg atgtgtccgg aatcgcctta 300 ttgcgatcgt tcacactaga tatttgtata gggacatagg actcatcata ggatggccag 360 aacgagcccc ccagggcctc agaaaactca gtaataaaaa gacagtcttc ccccaaagcc 420 aacaagggtc aagtccgact tcggtaagtg tagctagctt attgtagtgc ctggacacac 480 tcggctgcgt gtcgatgcct gtcggggagc ttatcgtgca ttgaccgaga gtttcctggc 540 a 541 // ID OSSER repbase; DNA; PLN; 4885 BP. XX AC X69552; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE V.carteri copia-like retrotransposon sequence Osser. XX KW Copia; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; copia-like retrotransposon; OSSER. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4885 RA Lindauer A.; RT "OSSER."; RL Direct Submission to Genbank (03-DEC-1992)A. Lindauer, RL Universitaet Regensburg, Lehrstuhl fuer Genetik, RL Universitaetsstr. 31, 8400 Regensburg, FRG. XX RN [2] RP 1-4885 RA Lindauer A., Fraser D., Bruederlein M. and Schmitt R.; RT "Reverse transcriptase families and copia-like retrotransposon, RT Osser, in the green alga Volvox carteri."; RL FEBS Lett 319, 261-266 (1993). XX DR GenBank; X69552; Positions 1 4885. XX SQ Sequence 4885 BP; 1110 A; 1085 C; 1492 G; 1198 T; 0 other; atatctgttg tagaactaag tttgtggcgg tcagctctct ggacgaactg gtttccgtat 60 catgccgtgc agatcgcacg ggcatctcta gggcaccttg ccctatatta gcttccgctt 120 atctgtctaa cttgtaacac aacgacgtgc taaggttgta tgcaatacgt gctaagcaac 180 ggcatagtta ccattcacaa caggttatga gccccgcata aggcgggaag caacgataca 240 aatgtctgag cgaatgacct acacggaaag gctaaacgtg gcaaatagga ccacttggct 300 catacgaact aaagcagaga tcatcaagct gaaagctgga agtgcgctcg taaatgcgct 360 tgacgaaagc aattctacct cggttgaacg acatcagacg gcgtgcgccg tcatctgcgg 420 gctactggac gataaagatc tcccgctact tgagaagcat aaggacgcgc gggacttgct 480 caacgcgcta gacgaaaggt acaaggggct aatggagcat cacgtgaccc ggctgtggag 540 ggactttaac gcgttcaaaa tgcagcctaa tcaaagccta agggactaca tcaagcggat 600 taaggacatc gtcgaggagc tgactgcatg caagcagccg gtagccgatg cgaacgcggt 660 cttgattgcc cttaaggggc tcccctccag atatgaccca tacgttgcac cgtattatag 720 cacaacgttg atgccgaaga cgctggatga gctcgagaac aacctgttgg gcgtcgagac 780 cgttatcgac gaacgagcat caacgagcgt actgcccaac accctcttcg ccggtaaggg 840 cgatcaagat aggggcaacg agcgcggcgg tggtaacagc cgcggtggag gctacaggcg 900 tggaaacaag tacggcggcg gtaacggcat taggtgtttt caactgcaag gaaatcggtc 960 actgcgccaa ggaatgccca agcctaagaa ggagtgcgcg aagtgtcatc tgttgggtca 1020 tactgccgaa gagtgtagga acagacgtcg ccgtggtgga gatggaggtg ctggaaacga 1080 cggcggatat gccgccgccg tggttgagcg cccgctgttc atgctggagc tgggggattc 1140 gccatcgcgt acggtggcgg ctgaaatgct tgagctagaa tccactccgg cgtttactgt 1200 gtcaccgtcg gctgcgtcgg gcagtacgga gacgtcaggg ccacagctgc gggagctaga 1260 cgctacctgg tacctggact ctggcgctat ctaccatgtc acgccggacg cacggtcact 1320 aagggactac aaaccttgtg acccgattcc gctgaagtgt ggcggaggtg aggtgcacta 1380 cgcggttggt tatggggacc tgttggtaga agttgtgaag gaacaaactg actgttattc 1440 attccacatc gggaataact actaccataa gcagaagggc ccagtagtaa tcaagattag 1500 aaacgtgtac tacgtgcctg ggtttaagtt tcggctcttg tcgcttaaac agctgacgaa 1560 caatggtgcg cagttttcgg gctctgggac gagcatggat gtttggaatt cccgggaacg 1620 atggtcttta tatgcacatt gcaagtattc tgtttattcc gtcaaagtca aggagaagct 1680 gccgagaatg cagtctggtg gaccggttgc gtcagtacat cttgtagcag atcgcgcacg 1740 actgtggcat tcacgctttg gccacctgag ctacggtaac ttggcgcgac tggctgacga 1800 agagatggtc gctggccttg acgtgacacc gaagaagttc cgagaggttg gtgcggcggt 1860 gtgtgaaggg tgtgtaatgg gcaagcattc taggaaaccc tttccggagt cacactccag 1920 tgtgggccgg gctctagaac gagtccatat ggacctcgca gggccgatgt ctgtagagtc 1980 ctatggggga aatagctatg tcgccacttt tctggacgag tacaccgggc tttcggtagt 2040 gtcgttcttg aagctgaaga gtgaggcaat agctgtcgtt aagtccgtgc tgaccctgtt 2100 ggaaaaccag tgtggacaga aggtaaagga ggtacgtacg gatcgaggaa gggaatattt 2160 gaatgctgag ctgagggagt tctacggtga gcgggggatt gtgcatcaga cctctgctcc 2220 ttacaccccc cagcagaatg gtattgctga gcgcctgaat cgcacgctga tggagaaagt 2280 taggtgcatg ttaatcgaga gtggcctgcc ttcacgtggg tgggcattag cgatgcatac 2340 ggcaaattat ttgcgcaatc gttcccctgt ccatggtctc aaagggacgc cgtttgagcg 2400 tttctatggg caaaagcccg acgtgtcaga tctgcgtgtg tttggctgtg tggcttatat 2460 tcgagtacct gatcaccaac gcaggaagat cgacccggta tctatgaagg gtgtttttgt 2520 gggttacgag ccggagtcta aggcgtaccg tgtgcttatg ccggatggac gacagctagt 2580 cagccgtgag gttaagtttg atgagcgtgc cttcggtttg atgagtgtta agggcctgca 2640 gtaccgggta gaggtggtca gggatgaaga tgaagagtct gagacgggat ggatgcaaga 2700 gggtgaagag gagagtgaag atagttctga tgtgcagtcg tctatctcgt ttgatgtctt 2760 tgagggttcg gccaccgtgg gagcaaacga tagctccggt gccgagcctg cttctacgtc 2820 tgggggtccg gttaccgtgg gagcaaacga tagctccggt gccgagcctg cttctgcgtc 2880 tgggggcgtg ggtaccgtgg gagcaaacga tagctccggt gccggatctg cttctgcatc 2940 tgggggcgtg ggttctgtgg gagggaataa tagttccagt accctgtccg ctgagggggg 3000 gaatgagcaa ccgagaaacc ctccacaact tcgtacctca acgcgttcta ataagggagt 3060 gccgcctgtt aagttgaatt tatctgcggt taatggagtg ccgttgacgt atgaggaagc 3120 aatgaaatcc ccagaagcac ctatgtggaa gcaagccatg gatgaagagc ttgcgtctat 3180 cagggcaaat gaagtatggc gcttagaaat tcccccgaag agtgtacgtc ccctacctgt 3240 taagtgggta ttttctttga agaaggatga gcatggtgaa attgtgcgtt ataaggcgcg 3300 tttggtcgcg aaggggtttg ctcaagtgga aggccgggat tatgaggagg tctgggcacc 3360 agttagcaag catactacgt tgcgtgcttt gctgtctggt tgcggctcgt gatcttgagt 3420 tgcaccagtt agatgtcaag actgcttttc tgaatggtga gctggaagaa acggtttata 3480 tccagcagcc acctggctat gttgagggcg aaccttattt ggcatgcaag ttggagaagg 3540 ctctgtatgg gctgaaacag gccccccgtg cttggtatgc gcgacttagg tcggagttag 3600 aagctatgaa tttcactgtg tcccaagctg atccgggatt gttttaccgg gatgttctag 3660 gagagcgcgt atatttgctg gtctatgtgg atgaccttct aattgctgcg aaggatatta 3720 atatcgtacg tcagttgaaa gataagttga aatccatctt gatgtgcgtg acttgggtga 3780 ggcccgtgtg ttttttgggt tttgagattg agcgtaatcg ggccgagcgt acaatgaagg 3840 tatcacagaa gaggtacgcc aaggggctag ttgagaagta cgggctggaa gatgccaacg 3900 ggcgtgctgt gcctttgtcg cacggcacta ccttgcattc agctggccaa ccacttgatg 3960 tacggcaatt ccggtttgga gagcttattg ggagtctgct atatttgtcg gtgggcacta 4020 ggcctgatat tgcatattcc gtgggagctc ttgcccgtca catgtccaag cccacggtgg 4080 agcattggca ggcggcgaaa ggggttgttc ggtacattgc tggtacggct ggtctgggta 4140 ttgtcttttc tccgaagtcg agtaatccat ctttgcatgg gtattgcgac tcggactatg 4200 cagcatgcgt agatacgcgt cgttcaacta ccggctacgt gtttttgaat gctggtggag 4260 ctgttagttg gtcaagtcgt ttgcagccta ccgtggctac gtcaaccgcg gaggcagagt 4320 atatggcgag tggagcggca actaaggagg ctttgtggta ccgtcacttg gcacgtgatt 4380 tacagatgcg ggtgtcttcg gtacctatct tgtgcgatag tcaggcggca atcaagatca 4440 tcaacaatcc gatttcgtcc gctaggtcaa agcacatcga cgtgcttcac catttcgttc 4500 gcgagcgtgt agcgcggggt gagatcgtgt tttcctactg caagtcggcg gacatggtcg 4560 ctgattgtct gacgaagcct ttgcctcttc ctcagttcaa gaagtgcatc caggcgatgg 4620 gtctgcgttg agaagttttg cctttggagt ttttcagttc ccagaggtct gcccgcgtgg 4680 gagtgttgta gaactaagtt tgtggcggtc agctctctgg acgaactggt ttccgtatca 4740 tgccgtgcag atcgcacggg catctctagg gcaccttgcc ctatattagc ttccgcttat 4800 ctgtctaact tgtaacacaa cgacgtgcta aggttgtatg caatacgtgc taagcaacgg 4860 catagttacc attcacaaca atatc 4885 // ID DGI_SP repbase; DNA; PLN; 3948 BP. XX AC X03806; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Fission yeast (S. pombe) dgI repetitive sequence (centromere DE DNA). XX KW Repetitive sequence; centromere; dgI repetitive sequence; SPDGI; KW DGI_SP. XX OS Schizosaccharomyces pombe OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Schizosaccharomycetes; Schizosaccharomycetales; OC Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-3948 RA Nakaseko Y., Adachi Y., Funahashi S., Niwa O. and Yanagida M.; RT "Chromosome walking shows a highly homologous repetitive sequence RT present in all the centromere regions of fission yeast."; RL EMBO J 5, 1011-1021 (1986). XX DR GenBank; X03806; Positions 1 3948. XX SQ Sequence 3948 BP; 1295 A; 667 C; 632 G; 1354 T; 0 other; ggatcctatt ctcatcccga atgcttttct tccacggaaa acaaattacc gaatttgtaa 60 actgtgacga ttttttttta tttattcaaa actttgcaaa ttaaactacc accaagtctc 120 ttaataagta aggaagtcgc tattattgga ttagtagacc acatcaccaa aatttcttgc 180 catgacgaca tcacgtgtac tagagcaatt cgggtcatac ttcgtgttca attctgattt 240 gatttctttt ttttcgagta tgattgtcaa caaaaaacga taaagacttt tacatctcca 300 gtcggctgaa ctccagtaat taaagttcga tattgtttaa aaattaaaaa aacaaacaaa 360 caaacaaaaa gatgaaatga tgaaatgatt gatgacgatt ttaaaaaaga tcaaaacttg 420 aaactcatat cacaagaaat ggagacaaca ttcaactata aagtttttca gcgagacatg 480 taccgattga ttcggtcttt gcaggactct tgatgtttgc ctaatcgggt taaattgtgg 540 tggtgtggta atacgtacta gctctcgttt ctttatatcc aactgacggc atcgcttgta 600 cttttttaat aacttctttt tcctcttcgt atggtgtgta aactgaatgg aaacgatgaa 660 cccatcatga acctcacatc atttggttcc gtctatttag tgctcaccca gtgttgcttt 720 atgaaatgaa acaatggttg atgttttcat caatcaccat gaattagttt ggggtaaata 780 tgattctatt attatctctt tctcaaagtg ctaagcgatg atgtacatgt atctatgttt 840 tccaaaatct ttatctcaat ttttgaaaca ggacttttaa tagtctttca tatcagcaat 900 tgtttcagaa aatgttaaca accatcaata tttacacaaa atgatataaa cactgatttt 960 accaagatta ccagcgataa aatgagtaaa ttaagctctt tagaagtctg atggtaattg 1020 ataaatatcg tgtggaaagt ataccgaagt ttggaagaac aagaactttg aaggatgaat 1080 tttccgaaat gtctttggta tttgtaattt tactacatat attttattaa cacattttga 1140 aatttttcaa aaacttattt ccttgtcctt tgtagctcag tcaccattac ttcactaagc 1200 tatttgagaa ttatatgttt attataaata ctcatgaatc tttcccaagc aaacttacct 1260 tgatctaata attctaacca ttcgcatcca tttttattta tttaactttt catttcatat 1320 ctatcttgtt tggtttgtga taaactcttt tttggaaata cattgggttt aaactctgat 1380 ttgtaaattt atttttattt ttattcttat ttattttgtc acatctttat ttgagtgttc 1440 atacgacatt tggaaaaacg gtgcaattga gcaaggctga attacttatt tttacattta 1500 ttgaccactt tcattgaagc taagctatat aatgaatgca acggttatgt gagattgagt 1560 aagaagtgtt atggaataag caaagttaaa tcagtagctt taattttttg ttgtttttaa 1620 ttttaatttg caaacaaaca aacaaaaacg tattcatatc atacacctaa tattcattct 1680 ttttattaaa aaagaaaaaa ataagcacta gtaaacttga ttggttctat ttatttgaat 1740 gaaagtaaac ttcgttattg aaacacgaat aggaatatca gacaacatat acgagtgtca 1800 agaataaaga agagttttta gatttaaagc agttttaaat gaaaaaactc ccataaaatg 1860 attaaatcac attcattgca ataggaaact gtattcggta tatacaatcg gtattgcatg 1920 ttgtaccaag tataatatag tgatgagatt ttgaagtttg tgttctatta ccacatggaa 1980 ctacgtcagg agtggagacc ataatcgttg taagtatgtt gacaaacttt atccaaaggg 2040 taaaaactca gttcttcgag ttataaatcg gaccagagtt gccgcaattg aaacgaatta 2100 gataagtgaa cagggcatgc ttagcaagta caaaccagta taattagaat tgaattaaca 2160 aaggtaaaac ttgaacgttc atgtttgtat actcaaaaga atcaacggag ttgtgaaatt 2220 ttcttagtgg agtttactca ttgatttttt accacttaca cacataagtc ttatacttgc 2280 caagttgaat ggtaccatta gtaccagtac tagtgtcatc tagtgtcagt actagtgtca 2340 tctagtgtca gtactagtgt cagtataggc atcaacatca tcaccagtat cggcgccaca 2400 tcagcacagc accactacca ctaccacttc cacttaccac ttccacttac cacttccatt 2460 actaccacga ctaccactaa ccatcaccac tttcatctcc attcttgtca ttattggctt 2520 gttgtacgtt gttcaaatgt ttcaacgtat gtacatttgt gactacgatt tcttgttagc 2580 gatataaacg aagaggataa agactttgga gtaaataatt ttggccgtgc actagcataa 2640 tgtatttgtg cgtctaggta tcctgcgtct cggtatcctt agcgttgcaa gtggaaagtg 2700 gcttcacact ataaatggtt gacacagcta atacattaga cataaacttt ctcagcattc 2760 acgaacagta aaaatactat tggtaaatga ttcatggata tatagtatta gtatttggca 2820 ttcgtttcgc ttatgaattg tgattgaacc gatatcgtat catcattaaa agtttcctgt 2880 acatcttcta catcattcaa acatgtggaa gaatcataaa tttcacaaaa ataatgtctc 2940 aatcgcatac gtattgtctg ctctgacttg gcttgtcttc tgtatgtgat ccaaatagac 3000 gagaatgtca atccatcatg tacgaccaat cacacttcct atagctgaac cgagtgcaaa 3060 tgcttttgta gcaatcatga tctgtgcctt tccaagttag gggttccaag actcgtcaaa 3120 gtgaattttt cattcttctt catttaaatc tctcgtgtaa atggttatca agatgtgatg 3180 agagaacaag tcaggtggtc gaaaaggatg cttaattaat gtacggtgaa cgtttcatgt 3240 ttattcattg aatcaccttt ccaaagtcta ttattttgtt tttatcaaca ttcgaaaatt 3300 caagggaaag cttaaatctc ttctaagaat acatgcagaa acaagaaaaa tggtttcccg 3360 cccagtggat gcttctgtga atacacaaaa gttttgtatg aaaggttaaa gcggttgttt 3420 ggcactgaat gtaactacca aggaaaaagt aatgctaagc aaatttaatg atgcatatat 3480 aattgggaca attgcaacat ttgcaatgtt ttgccaaagc gaaattgtat ctttcgtttg 3540 cgtataagga atgtgcctcg tcaaattatc atccatccca gctgaacaaa tactgtcaaa 3600 gatttcaaaa aataccgtga agcatttgct ttattaacga tgttactcaa taaaaagata 3660 ttcatttgtg gcataacaag ttctcaattc gattccaagt acatggagag cgtatgttga 3720 aattaataaa tctaaaatgg tgattaagga aggattactg tgcatctttg aaagtcattc 3780 aattccttaa ttaaaaacga ccaatatgct gcggttcacc cttaacatca tgtttttaac 3840 caacgacatc atgggtagta aaataagtaa aaccatattc atattctttc ttaattttct 3900 caattttgat cgtatttcgt ttttttccac aacaccagat attaaaat 3948 // ID Copia2-I_VC repbase; DNA; PLN; 6231 BP. XX AC scaffold_83; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia2-VC; KW Copia2-LTR_VC; Copia2-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6231 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 107-107 (2008). XX DR Genome; scaffold_83; Positions 294097 287867. XX CC 'TACA' target site duplication CC LTRs are 77% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2151..3923 FT /product="Copia2-I_VC_2p" FT /translation="MRGRLSGKKGAWKAWVVNALVISWITSGFPLRWVSSP FT PPQHSGRNHASATANTAFVDKAVADLVASGTARVWLSQPRVVCPLGVVQQA FT TKLRLIWDGRPVNNYLHVPSFCYEDLKAVPGWLLPGDYLFTLDLKSGYHHL FT DIDPRFWEYLGFCWRGVFYVFTQLPFGLASACWAFTKLMREVMHPWRKRGW FT RCSGYIDDQVHADQNADNLVRRRAEVVAQLETLGFLVNKEKSMLGAVQHRI FT RYLGMLIDTKDSVFIVPGNKRDRLLSQINSVLTARRSTARLLASIKGQLLA FT MSWALGPWARLRTRALGQLIETRQTWETHLSLSDDAREELSFWESSFDRFN FT GRRHLWVPSVVHSLIFCDAAGKSSESLGGWGAWTILNGRLAPARGEWTPDV FT SAMGSTPQELQAILNVIQSFDSPAGLSGQSVKVITNNLNAANVVNKGSAKA FT DNSHKVACELLSFCFEQDIRLQAEWRPRGQNQLANALSKLQEPDDWMLKPS FT IFRRLHDTWGPFNIDLFTSHAAFQLPVYYSRYFTSTTSGVDAFRFSWGRRC FT WANPPFHLLLRVLQHAEACQSRLCLVAPFWPTRDWWPFITADGV" XX SQ Sequence 6231 BP; 1063 A; 1892 C; 1870 G; 1406 T; 0 other; tgtttgttgg cttagacgcg acggagcgaa gcgaccggag cttctaaggc tggttctgtg 60 gtactgtcgt acaactggtt cgcagtggcg acttcattct caccgctctc ctggtgaagt 120 cattctgcct tcacgcagaa gagcatacag ccttgtccaa tagtcagtgt gacaggctgt 180 acttgaagcc ttaccatttc aagttccgat ctacatcgct cgagttccta cggttccgac 240 ttagttcctt caaatttcaa ctattaatga caatgcgcca tagacagaga ccgtagctac 300 cgttccaggt ggggctggtg gtgggttggg caccatcggg tcctccccgc cggccagtgc 360 tgctaagacg ggcgctgctg ttttagaaac agtagtgatg aatgccctag agaaggtctc 420 tgagaagcgc tgccgggacg atcgggccgc tttggagcag gcagatgagt ttcgcgcgga 480 tgttatggct aatgagcaga gatcactgct ttaacaacat caccggcaca cggatcccaa 540 aaggtgaaaa agcggaggcc cttgtgcaga ctgggccttg cggacggcga gcgcctccac 600 acctggcagt catggtggca gccattctcg cggcgctgga ggctccggca gtggaggcag 660 cggtggcgga tcgcgcggca gcagccacag gggtggcggc cagcgtggag gtcatgagta 720 cggtggaggt cgcgatgcag agcgcttgat cgcagcgatc gcaatggcaa tagccgcaag 780 gaaggccgca gcggcaagta gtggttttca ggcgctggcg cagtagagtg gggcccgtgt 840 gcctgtcttt ttcttggccc gtgtgctgct tcttctcttc aaggaccatc gccggtcagt 900 gcagagtgtg caagttttct ttcttctttg gttatgatga ggttgccagc gagcatcgat 960 taggcacccg tgcgtgcgat tgaggcgccc gtgtgcgcga aatttggtgc ccgtgtgcac 1020 agttgttggc gcccatgtgc gcagttttgg cgcccgcgtg cgcagttgtt ggtgcccgtg 1080 tgcgcagtcg ttggcgccgc gtgcgcagtt gttggcgccg cgtgtgcagt tgttggcgcc 1140 gtgtgcgcag ttttggcgca agcgtgtgca gtcgttggcg ctgtgtgcgc agttttggcg 1200 cccgcgtgcg cagttgttgg cgcccgtgtg cgcagttttg gcgcccgcgt gcgcagttgt 1260 tggcgcccgt gtgcgcagtt gttggcgcct gcgtgcacag ttgttggcgt ccgcgtgtgc 1320 agttgttggc gcccgtgagt gcagttgttg gcgcccacga gtgcagttgt aagctgtgtt 1380 gacgaccttt tttactcgcg gtgttttgcc ttcccgcttt cctcctttat atcgcgttca 1440 cattttgagg ttgtgaacag accgtcacac gggttcactt tgtggcagcg tttgcctttt 1500 ttcccttttc ggataattcg cgtcaggcca agtggccact caagtcgcct cggcagccgg 1560 ccggctgggg gacccgtttt ttgcctgtct tactctttaa gtgttgctcc acttctcgcc 1620 tcgcccgtgt ctccaacagt ctgtccggtg cacgcttgca ggccttcata gccgccagta 1680 attccagcct gaggaaccat ggattcgttc tcgcacgatg atgctattgc cttcctgtcc 1740 gagctagggg tagaggccct ctcgagtctg ggccttgtgg aaaacgtcca gctgtccgtc 1800 agtccgtccg tcagtccatt agtccgtcca gccaactcaa agggcagcgt cttttaggtc 1860 agccgcgcgg cccacccacc gcagcccccg aagacttgcc agcccccaaa cggcccgcac 1920 cgggccccat ccctgcccgt cggccaaagc tggaccccgc accagttccg gcaagtctgg 1980 ccacgcatcg gaaacaacca gcccgccccg cggtggcgcc agaaggtgtg aaggttgagg 2040 ccccgggtga attctgggaa gataaagggg agttttcttg tcctactttc gacaacgcct 2100 cgggatctcg gtcgactcca gtagcgggtc cgccttccgt gccgccccag atgaggggac 2160 gcctctcggg caagaaaggc gcttggaagg cttgggtcgt gaacgcgctg gtcatctcgt 2220 ggatcacgtc gggtttccca ctccgttggg tctccagccc tcccccccag cactccggcc 2280 gcaatcacgc ttcggcaact gccaacaccg cgttcgtgga caaagccgta gcagatctgg 2340 tggcgtcggg cacagcccgt gtatggctgt cgcagccccg cgtggtttgc ccattggggg 2400 tcgtgcagca ggcaactaag ctccggctta tttgggacgg caggccggta aataattact 2460 tgcacgtccc ctccttctgc tacgaagact tgaaggcggt tcctggttgg ctactcccag 2520 gcgattatct ttttactttg gaccttaaaa gcggctatca tcacctcgat atcgatccca 2580 ggttctggga atatctcggc ttctgctgga gaggggtctt ctatgtcttc acacaactgc 2640 ctttcggcct cgcttccgct tgctgggcgt tcactaagct catgcgagag gtcatgcacc 2700 cctggcgcaa acgcggctgg cgatgctcgg gctacataga cgatcaggtt cacgcagacc 2760 agaacgccga taacttggtc cggcgcaggg ccgaagtggt tgctcagttg gagacgctcg 2820 gtttcctggt caataaagag aaatctatgc tgggggccgt gcagcatcgc attcgttact 2880 tgggcatgct tatcgatacc aaggacagcg ttttcatcgt gccaggcaac aagcgggacc 2940 gcctcttatc tcagatcaac agtgtgctca ctgcgcggcg ctcgaccgcc cgcctattgg 3000 catccattaa aggccaactc ctggccatgt cttgggccct cggaccttgg gcccggctgc 3060 gcacccgagc tctcggtcaa cttattgaaa ctcggcagac ctgggaaacc catctctccc 3120 tctctgacga cgcacgggag gagctgtctt tctgggagtc gtcctttgat cggtttaacg 3180 gccgacgaca cctgtgggtt ccgtccgtgg tgcattccct cattttttgc gacgccgcag 3240 gcaaatcctc cgagtccctc ggaggttggg gggcctggac catcctcaat ggccggttag 3300 cgccagcgcg tggcgagtgg acacccgacg tcagtgctat gggatctacc ccgcaggaac 3360 tccaggccat tctgaacgtg attcaatctt tcgatagccc agccggttta tctggtcagt 3420 cggttaaggt catcaccaac aaccttaatg cagcgaacgt agtcaacaag ggctccgcta 3480 aagcggacaa ctcccacaag gtcgcctgcg agctgcttag cttttgtttc gagcaggata 3540 tccgcctgca agcggagtgg cgaccccgcg gccagaacca gctcgccaat gcgctttcga 3600 aattgcaaga gcctgacgac tggatgctga agcccagcat attccgcagg cttcacgaca 3660 cctggggccc cttcaacatc gacctattta cgtcccacgc ggctttccag ctccccgtgt 3720 actattcccg ctatttcacc tcaacgacgt ccggagtcga cgcgttcagg ttctcatggg 3780 ggcgcaggtg ctgggcgaac ccgccctttc acctcctcct cagggtactg cagcacgccg 3840 aggcctgcca gtcccggctt tgccttgtcg cgcctttctg gcctactcgc gactggtggc 3900 cttttatcac agccgacggg gtctgattca aacctttcgt gagtggagtt cgcttgctcg 3960 gccgggccgc ggatgtcttc ctggcccgca cttcgggggc ccccctgccc aaaggcgctt 4020 cccgctggtc caccttggcc cttctggtcg acttctcggc cgctaacatc aaccgtatcc 4080 gtgtccccgc tgatctgacc gtgcccctcg cacagactta gatgcccggg ctgaggctct 4140 tttggtcgct cttggcgcgg aggcggacac ggagctctcc accttggcga ctcagtttgc 4200 ccaagtggcc ggtcagacac tcgccccgcg gacatccaat gattacgcgc ggtcttggga 4260 acccttccgt gagtggtggg tggccaggca actgcccgga agcatctatg acaccccggg 4320 tgaggcggtg gcgctctatc tgctctccct gctgaactcg tccaaggaag ataaggtggg 4380 gcctggacgg gttcgtacag cgagtgcagc aatcagctcc cacttccgcc tagccggcag 4440 agcgccccct acagagcacc ctgcctgcag catcgtccgc gacctcgccg aaaagcaact 4500 ccaaggccgt aagctggaac gcgacaccct ggagccggcg gacgtcatgg cgctggcctg 4560 gctggtcggt gggccggagc cgcctctcga ccaactcatg accgttacgg ccgtcatggt 4620 catgttcgcg gggttctttc ggttcgatga tgctgcggag atcagcgttc acaaggacct 4680 tctggttatc acggcaactg ggatggatgt tttcatccct cgatccaaga ctgatcagca 4740 gagacagggt cactgggttc ccatcgcccg cgtcggcggt gccgcttgcc ccgtgggcct 4800 gacagagcgc ctcctcaccc taggagggta caaacgccgc ccagacacgc cagacgagga 4860 cgtcgggccc cttttgcgac cggtccagtg gaacagggcc ggggggtact tgtcaggccc 4920 cctgacaggc acggtggccc agccgatcca ctccctgtcg taccctgcct tctgccaccg 4980 gctcaacaag accctgcagg cggcggggat cacccaccgc atcactgcgc attccatgcg 5040 cataggagga aatagcactg ccgccgaccg cggtgtgcct gcggacctgc gcaaagcgca 5100 cggccggtgg cgcagcgacg ccatggtgca gcactacaca cggcgcgacg gggaggcgaa 5160 actctccgtc tcccgcagcc tgggcctcgc cagtgagcaa atgtctcttc ggtctgctgt 5220 gtaaggccct tggcagcggt gcaattctcg ccaacaaatc gtccaaaccg caccgttcag 5280 caccatcagg tcagccaatc ctccgccacc agaaccagtt aagggagaca gtaacacaga 5340 attgttggct tagacgcgac ggagcgaagc gaccggagct tctaaggctg gttctgtgga 5400 actgtcgtac aactggttcg cagtggcgac ttcattctcg ccgctctcct ggtgaagtca 5460 ttctgccttc acgcagaaga gcatacagcc ttgtccaata gtcagtgcga caggctgtac 5520 ttgccccccg cccgccctgt ccctgtcagc cccttgcttc cttttttccg ctatccccag 5580 tcttgcccca gatgcagcac tgattggctc ggcctggcgt cgacgggctc ctgagaggcg 5640 ccctcccccc ctcagcatgg tggcaggggg aggcagcacg cgcgcgggag gggggtggtt 5700 cagggggcgg gccgaggcgc ccgcatccgg gatgaggggg aacacccctt ggggttggtg 5760 cctggtcgct tctggtcagt cgggctttgt ctggtgcgaa agtcttcggg gcgcgcgggt 5820 gctgcagtgc ttttgtttct taggttagct ttgttttggt ttttggtgtt gggcgctggc 5880 gccctttcgc agtgtgttcc ggactgttgg ctgtctggtg tgtcgcgccg tggtcggccg 5940 cgcggccccc gtggctacgg gcggcctgct ggccggttgg gccgtgcggc cactgatagg 6000 cttggctgtt tgctctttct gctgtgtaag gcccttggca gcggtgcaat tctcgccaac 6060 aaatcgtcca aaccgcaccg ttcagcacca tcgggtcagc caatcctccg ccaccagaac 6120 cagttaaggg agacagtaac acagaaatgc atgtatgcgt gtatgcatgt atgcgtgtat 6180 gcatgtatgc gtgtatgcat gtatgcatgt atgcatgtat gcatgtatgt g 6231 // ID ZEPP repbase; DNA; PLN; 8943 BP. XX AC AB008896; D83919; XX DT 02-JUN-2000 (Rel. 5.05, Created) DT 02-JUN-2000 (Rel. 5.05, Last updated, Version 1) XX DE ZEPP is a non-LTR retrotransposon. XX KW Non-LTR Retrotransposon; Transposable Element; KW reverse transcriptase; LINE; Gag-like protein; ZEPP. XX OS Chlorella vulgaris OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; OC Chlorellales; Chlorellaceae; Chlorella. XX RN [1] RP 1-8943 RA Higashiyama T., Noutoshi Y., Fujie M. and Yamada T.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (21-NOV-1997). Takashi RL Yamada, Hiroshima University, Department of Fermentation RL Technology, Faculty of Engineering; Kagamiyama 1-4-1, RL Higashi-hiroshima, Hiroshima 739, Japan RL (E-mail:tayamad@ue.ipc.hiroshima-u.ac.jp, Tel:0824-24-7752, RL Fax:0824-24-7752). XX RN [2] RA Higashiyama T., Noutoshi Y., Fujie M. and Yamada T.; RT "Zepp, a LINE-like retrotransposon accumulated in the Chlorella RT telomeric region."; RL EMBO J 16(12), 3715-3723 (1997). XX DR GenBank; AB008896; Positions 9 8951. XX SQ Sequence 8943 BP; 1621 A; 2925 C; 2749 G; 1648 T; 0 other; agattgcatc acatcgattt cacacgattt ctccaccgat acaccagcat cttcaagttt 60 ctcacttgca ttgtgtagag aatgttcaca gctttcgatc gataccccac ttgcctactt 120 ttgtgcgtat ttactcattt cgaccacgac acagttgcca tcccgcgagc tcacacgtcc 180 ggatagcctc caatgtagct tattttcagc cactatcatc atcgacaata tatatacata 240 ttttacgcga atgttacccg tctccactgg accagatgcg cacagccacc ttcctcactc 300 tacactagcg actaacactt ttccactatc cccatggtta ctcgctgcgg gacatatatt 360 atgggattcg atgttgttct cctgaattct tgaaacagtt gtgcctgtac tttatgcatt 420 tcagccacca aaccattcca catactgaca accagtggta gctaaacagg gttcaggggc 480 aggagggaag tgtcacaagg gaggaagagt gcggggagga aataggggca ggggaagagg 540 tcacacgagc ctcttttgta ggcttcccga ggggttttca aggcctttag tagggagctg 600 ccacagctct tgaacaaggc cccaagacct cctcggcgga cggtggacgc cctaaagagc 660 taatcagcag gagcaatcag cacaggggag cacaaggtag tagagaggag cacagcagca 720 gcagcagcag cagttgccca gcaacttggg tcccccacct ggccagcctg atcagcacga 780 tgcagactgt caagtcatgg cagttggagc ctcagagagc cctggatgcc catgcgttga 840 gcactccccg gccaaggctt ctccggccgc ggccagaccg gtggggggac agcgagccac 900 tcctactggc tgccttgggc cagcttgagc tgcaggagga ggttccttat ggcagcccgg 960 agcgcatgca gctggagcta aaggtcacca gaggagtaat cgctcacttc gcgccgcatg 1020 tcgggggagt caagcagcga ggatcgcccg gggcagctga cagctgcgtg gagctctggt 1080 ttgacacggt cccggcagca gctgcggcgc ggcatgcggc agcggaggac cagcttgtcc 1140 ggctgcgtgc agtgccgggc agcggagacg tagcggtgcc ggtgcaactc actgctgggc 1200 ggttccactg ccagcacacc tgcatcatca tccacgggct gccgtacgag tactgcagaa 1260 agggtctcac tcagaccctt ctggactgtg ctggctgccc cagggacaca tacgttgttc 1320 gcggcgaatt cctcggcgac ctgccaggac cgttggcagt gggcacccat ggcgtcggca 1380 acgggaatgc gtgccttgca tacatccaga cgccggatga ggaccggcac ttgggccgct 1440 taccaaagcg gttcttcatc gacggtgaca cccggatcaa tatcacgcgg ccggggcagc 1500 tgcggcagcc cagccagcca tcctccttcc agtcgcagcg cttagctccg gagccgtcgc 1560 gccgctcagg gcctcgaccg atccgtcagc ggcagcgccg ctgcgcaggc ccacacgcgc 1620 acgcagccgc ggcgcagcgg acacagccag cacccagtgc ccagttgcag cagctggagg 1680 cccgcgtaca agccagccgc gcgcccggtg gcgaccgctc tggcctgggt gcgtctggct 1740 ccatcagtgt agcgcgatta ggcccgcgtt ttcgccccgc tggagacacg cagccgctaa 1800 ctccgatgga ctgcacccct ccgcgaagtg cacaggtctt ccctgctgct agacaggcac 1860 tgacagacat ggaggaagac acgccgccgc cgccaccgcc gccggtaccg atggagtggg 1920 agacacaggc atactcggtg ccgcagcgag agttgcgacg caggatatcg cgcgtgcgca 1980 taaaaggtgc agccaccccc atggattggg atctgcctca caccgaggat ccaccccaga 2040 cggctcaccg tcgccctccg cacctggacc tcagcggcgt cccggttgag cgtattgagg 2100 agtgcctgga gtggctggca gggcatacac acttctcccc cgcagacagc gcggcagcga 2160 ttcgccggct gcacagcgat gcaccactcg cgctcgtgtc gggaggggat gcaccagcag 2220 atagggagct gcggcaccag ctcctctgcg atgctctgcg tcgcatccat ggagcagaca 2280 gcttgccgga cgactcgtac ggcttgccgg ctctgacacc ggaggaccta gcgcagccgg 2340 cagaggtccc agcagcaccc attgcacgtc agcaggggag acccaccgtc ccgccgggct 2400 ttgagtcgcg agcagccgca gcgcgcgcag cgcagcgtgc ggcgcaggtc gcactagcgg 2460 ggctgccggc tccgtggcgc tcagcgcgta cgcggcatca gcctacagag tggtggctac 2520 agcagcaggg gcaacagcag gagcggcagc gggtagagca caggatttcc aggagcattc 2580 gcagtggggg cccgccggca cggcggccct cgcagccatg actcgctccc gatcgccctc 2640 cctgcgcctt ctcagcctca acgtcaacgg cctcagggac agagacaaga ggcgctgcct 2700 cttcaacctt ctggagcgcg acaggtggga catcatcctc cttcaggaga cccaccacag 2760 ctctacagag gaggggacag catgggcgca ggaggggcct gccggcgttc gctgcaattg 2820 gagcgggccc gcattttggt gccacttcac ctcccagtca cgcggcgtag cggtcttact 2880 aagacccaca gcctccacag cagccatcac ggtgcgtcac tgcagcacca ccggacgcac 2940 cctactagtg gacttcactt attgtggcca gccctacacg gtagcttccg tgtacgcacc 3000 tgcggccgca gcggacaggc agcaatatta cacacaggag ctgctgccca gcctgccagc 3060 agcacgttgc cttctggtgg gaggggactt caactgcatt gcaggccagc aggacatggc 3120 cgccgggcag cccggtcaga ggacgcatgg atattggacc ggcctgcggc tcgtggagac 3180 tgagcatcag ctctacgatg tctggcgtga cctcaacccc agcagtcgtg ccttcaccca 3240 cgttgccacc acaggtcagt cagctgcccg gctcgaccgc tggctggtct cggagacgct 3300 gcgggcgcgg gtcagccggg agccgcgagc gatcgggcag gttcttggtt atccaggaga 3360 ccacctgggg gtcagcctga gccttacagc tccagccagc acactgtatg gctctgcagc 3420 ctggaggctg ccccttcatc ttctggacga tcagccgttc tgcgatcgcg ttacggcagc 3480 gattccggag tatcttgccg cacacccgct cggagagggc gtcacgcagg gcagcaggtg 3540 ggtggagttg aagtggcagg tcaaagatat ggccatgcag cgttcctggg ctctcgcagc 3600 ggagcgccgg gcctctcagc gggctctgga gtctgacagc cgcgcagcgc tcgcggcgtt 3660 cacccggcgg cccgcaccag acacccttct ggcatggcag aatgcccacc agcttctgca 3720 gggcctcaat gtggaggcag ctaagggggc agcactccag gctgggatcg tatggcagtt 3780 ctacggtgag cagtccacct tctggttcca ccacctggcc cggggacggc agggccgcac 3840 agagttgatg gccctcagga caggtccagc ccctgacagc ccacgggttg tcctggatca 3900 cccagccggc agagatcggg gcggcgcggt gctgcgggag tactacagtg gcgacgaagc 3960 ggcaggcctc ttcgcggcgc agccggtgtc gctggcagcc caggatgagc tgctgcaggc 4020 agtggacaag cgtttgtctc ctcaggcagc tgcagcggca gaaggagagc gcggtgatgg 4080 cagcgtgtcg gtcgcagagc tggagactgc cctccggagc ctgccgcgcg gcaaggcacc 4140 gggcttggat ggcctgccat atgagttcta cctgcgcttc tggcctgtgg tagggctgga 4200 gctggcaggg atgctgcagg aagctttcgg cggcggccgg cgctgtccac cgctgacgca 4260 ggggcgtatc actctcttgt acaaggggaa gggggcagac agggagtctc tagccagcta 4320 caggcccatc acgttgctca acaccgacta caagctcgcg gcgcgggcga tcgccagccg 4380 gatcgggccg ctgctgaatc aggtggtgga tgccacacag acaggcttcc tgcctaagcg 4440 ctgggcgggg gacaacgtgc tggcacacct ggaggagatc agctacctgg aggccacaca 4500 ccagccaggc gtgcaggtct tcctggactt cgagaaggcc ttcgatcgcc ttgacagggc 4560 ctggattgag cggtgcatgg ctgcggtggg cttcgggccc ggtgtgcagc ggtgggtgca 4620 cattctgcac tccggcacga cctcgcgagt ggccttcaac ggctggcaca ccgatgcctt 4680 cccggtggcc gccggcgtct tccagggaag ccccctctcg ccgctgctgt ttgtgcttgc 4740 tcgcgcaccg atggccgcgc atgccaggat gcttgcaggc cagctagctt tccagcccat 4800 cagactgcct tcaggggagc cagcaccagt catgcaccag catgcggacg acaccagcgt 4860 gcacgcgcgg actcccggga tgctcagatc gtgctggggg cccagcgtgg gcctccactg 4920 cgcagccaca ggagccaggc tgcagcgcag caagagccag gccctaggct tggcagcctc 4980 agccatctcg ccgggcccga tccagtcacg gggggtcacc ttcgcggctt cgagcgacgg 5040 cgtcaagcac ctgggcattc ccttgtccac ccagccagct gcagctgcca cagccctata 5100 cacagccatc attgagaagg tggaggcccg catcgcccgc tggtccggct tcagactcag 5160 cctgctgggc cgagcgtacg tcgcaaaaca ggtgctggcc tccatggtca cctaccatgc 5220 caccttcata ccggtgccac aagacttgct acagaggctc tgcagagcca tccacacttt 5280 cgttgcggcg aaccggccgg tgacccctgg cgcagcggcg gcgctgttcc caagcaagga 5340 cgtctgcttc cgcgcggccg cacacggcgg catcgcgctg gtggacatta aggcccagat 5400 cctggctctc caggccaagg tggtgggcag gctgttggag ccggaacagc tggcctggaa 5460 ggctaacttc gaccactggc tgtacaggag cacagcctgg ctggcagcgc aggaacccgg 5520 cacgtgtcag cgcggcggca gcacatctgg cagctgggaa gattcctgct cttctccacc 5580 ttcgcagcga agcatgtgga ggccccgcag cgcgtacggc agtacctgca tgcctaccag 5640 cagctgcggc cccatcacct gcggaagccg gaagcgatcg gctacgacgc agtcatgggt 5700 gagccactgt tcttcaacag gcagctcacg gatgcagtcg gcagcccttt gcctgggagg 5760 actgggccag gcttggcctg gtcaggatca gccacctgcg cgatgtcgtg cgcggcccgg 5820 agcatccggt tcggatggtg cgagagcgcg tgcccatcct tctggctgcc ttgccagcag 5880 cctggagagc gctaatccag gtgcagccac cggccgctat gtggtgcgca tctcggaccc 5940 gtcggatcgc cgcgtctgtc tcgcacagcc gaaggtagca cctacttctc agccacacag 6000 taagcagcac aggagccttc tgtgccagtg gacgaaggcg ttgcagccat gcacgcattc 6060 cttcctccgg ccgcgcagcc tgcattggtt cagcactggg acatcaccag gccctggcat 6120 ccacgcagcg gcacacgtca gcagcgccag cacgcagagc agctgcaccc agagcagcac 6180 ctgcaggtgg agcagcagac aggggagcag cagccagggg agcagttgga gtgggagcag 6240 cagctgccgg agccactgcc accaccgccg cccacactta tacttccttt gcctctgggg 6300 atcccaggta caggaccctc aggcttgggg gctcggcacg cggccggcac atgagtttgt 6360 ggtgagggag gccaccgcgc ggcgacaggt gcttcacagg atcagcaagg gggaggccag 6420 cccggcgggc ccgctgcgac cagccatctg ggctgatacc acagatgatc agcgcacgcc 6480 ttcgggcgct cgaggcgcga tgggaggcca gggctgcagc tgctggtacc tgcgtcgcag 6540 gtcttaggca agaggcctcg agggcagcct gatccctcct cctgggcgat ctggatggct 6600 gcgccgcaca ccgttccggt tccgctgcgg gaccgcggcg ggcctgcacg cgcgccagcg 6660 gccccttcac cagtgccaca gggagcagat gtcactgttg atcctgctgc tgctgtcaca 6720 gcagaaccca tcagcacctt gggctcatgt gtggcaaagt ggtgcaacgc ttcccatctg 6780 gaccggcggc agcgcgtgac agcgtggagg ctgctgcatg gccagctctt cgtcggcggc 6840 ttcgcgcgtc acgtccaccg cgccgatccc gccggtcacg tttgcccgca tccgagctgt 6900 gcaggtcagc tggccacact cacccatgtc ttcatcatct gccctctcgc cgccggggtg 6960 tgggactggt tcgcagcgac atgggccgcg gtgaccggag acgacgcgcc accgcgcagc 7020 gccgaccttc ttctcgccga tgacaccagg atctggggac cgccgcggca gctcaggcag 7080 ctctgggacc tgcggctcgc tacgatctgt cagctgtggg cagcatatca gcgcggccgc 7140 cacaggccag atgcggcggc gatcaccccc ggagcggttg cggctcgcat cctgtcttcc 7200 tgcaagaagg ccctgcttgc cgattggcgg ctcgcgaccg tcaacgtccg gcagacagca 7260 ggtgtgctca gcgactggct tcgcggacgc gacccgatga tcaccaggga gcagtttgcg 7320 gcgcgatggt gccaccgcgc ggtcctctgc gcgctggagg agctgccggg cgcgcaacca 7380 gtcatccact ggagtgccca gcatcccgtg ccgcttccag cgtgacgctt ccgatccacc 7440 attcactgta cccagccggc cacggctcta acttggctat ctgtatgacc atgctctcat 7500 ttggccttct gccatgacac ccgctcgtgt cgattcttgt gttgaactca caccctctct 7560 taggggggcc tttgcgatag gtgctctggg cacatgggcg ctaagagcct tcgtcatacc 7620 atagtcaggc acggatgact aacctttcac cagtcccgat cccaccccgg caaagcccgg 7680 cctgtcgttc cttgtctgag accccttttg ccttagagcc ctgggaccac agattgccta 7740 ccagaagctt tgcgcctctc ctacctctaa cctttgccag cgcggaatgg ggctccgagt 7800 cacgtgcttc cactggtcga gggacctgtc gagctcggcc caacacggcc ccgggggtgc 7860 ctccttcacc cctggggcac tggcctcgcc acccagtgcc ggtggcctcg cccaccaccg 7920 gacgtgtttg cgcggctcac cccttgggta tccctcggcc agacggatcc atcgtgcgcc 7980 ccgctacctg tggagtaccg tgccggagag ccagagcgtt ggcgcaagct tacagaagac 8040 caccctgccc agggctttag gctatcaata gttttccagt gatcctccga tgtttctgtc 8100 tcaccggcag ccccaacaat ccccttggcc tgtcatccgt ggccttctgc cttagtgtct 8160 gtcctcctca ccattcacag tagttcattg aaggctatct gaagggttta gggtttccaa 8220 ccccagtatc cacccttgaa cctgagcggg tgtctaggac cttggacatg atgcctcctg 8280 cctatccccg cctccaatgt ggtgggtgtg tgtatctggt cgagttctcg ccagcctacc 8340 tgtttttcgc ctcatttgcg gcttcatatc tcccatatgc caccgtttgc ttgtgcccca 8400 ccttgctggc agattgaggc atagtttagg gtcacattgc cagccccgag cggcacctag 8460 tggtaatggg tccgaacgcg atcctgttcc atccctgtcg gccaaccgta taaacgtgcc 8520 tttcatgtct gttccaccac tggttgcccg cacatccata attgcctgcc agtgattgat 8580 gattgcctgc tttgctgtga cccctgcctc cagctgcaag ccctaggctt gccccgtggg 8640 tcctccaacg tcacctcagc ggtgttgcgt tgccggcggc tggagtgcgc ctctggggat 8700 gaggtaaccc tctggtgctt gggacatgtc catcgctagg agcctttctg ttgcctttct 8760 gtggtatgcc ttcatgcttg cgcttctctt aagtatcgca ttatcctctg cgggagtgct 8820 ctgcgtgccc caactctgac aggtttcccc aaatatccta ttgcatgcgt gctgggaagc 8880 gtgcgactgg cacctgtgta atagcggggg cttccccttt aaaaaaaaaa aaaaaaaaaa 8940 aaa 8943 //