ID Polinton-2_CB repbase; DNA; CBR; 15471 BP. XX AC CAAC01000061; XX DT 15-MAR-2006 (Rel. 11.02, Created) DT 15-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE A family of autonomous Polinton DNA transposons - a fossilized DE genomic copy. XX KW Polinton; DNA transposon; Transposable Element; KW Interspersed repeat; Maverick; Tlr; Polinton-2_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-15471 RA Kapitonov V.V. and Jurka J.; RT "Self-synthesizing DNA transposons in eukaryotes."; RL Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006). XX DR GenBank; CAAC01000061; Positions 737488 722018. XX CC This transposon is characterized by ~400-bp terminal inverted CC repeats and 6-bp target site duplications. The genome harbors CC several copies that are >90% identical to each other. This CC transposon encodes a family B DNA polymerase (POLB-2_CB, pos. CC 10925-14738, corrupted by mutations), retroviral integrase CC (INT-2_CB), ATPase (ATP-2_CB), cysteine protease (PRO-2_CB) and CC one unclassified protein (PY-2_CB, pos. 6709-5147, corrupted by CC mutations) conserved in Polintons from different species. XX FH Key Location/Qualifiers FT CDS 3427..4473 FT /product="INT-2_CBp" FT /translation="MELVYCFKCKKYTDTTDIFNVETSSKRSMIKGLCQDC FT KTMKCKLIPTITGGSGLEDIKEVEISEKSKILRQSTSSEGERDLLEKTYYS FT PESGFCGVNELQRKTKLPIKEVKEFLNEQDVYTLHKPARKNFKSQRVFVNG FT IDDQWQSDLVEMIPYEQENEGYRYLLTIIDCFSKFAWVVPLKSKSGKETAD FT ALSSVFTKSKRKPKKMQTDNGKEYYNTSMQKLFKSLEINHFSTYSDKKASI FT IERFNRTLKEKMWKMFTHQGNHKWVDILDDLVLGYNNHYHTSIKMTPTQAS FT KIENERIVYNNLFPSKLEGESNNKIENSTKFKIGDTVRITKYKAIFDKGYL FT PNWSTE" FT CDS 7640..8257 FT /product="ATP-2_CBp" FT /translation="MNLLLDAYKGEEYLDYNNLYIFSTTLFQPCYQALING FT LSEGLSKKEIRECFKKQDFIIVEKEIVKSTINVVSSDSLQDIPDPSSLDPN FT KKTLIIFDDLLLEKQNKIEQYYTRGRHSGVDCFYISQNYIKLPKNTIRENA FT NFFIVFPQDKMNLDYIYRDHCSEIKKDEFLEFTRDTFKEKYNFLTIDKSSD FT LDDGRFRKCLKYFYVF" FT CDS 15179..14769 FT /product="PRO-2_CBp" FT /translation="MAKLEKDLKPLTNLDLIELIDTLGIKSFRGVFMRDTL FT PAKPKDKEVGIVNLDSSEGRGTHWVCYSKNKDKIYYFDSFGLDPPLELQEY FT LKNGEDKIKILSSTFQIQDFASHHCGYYCLLLLKLLETKDFQNIVLSFL" XX SQ Sequence 15471 BP; 5690 A; 2208 C; 2471 G; 5102 T; 0 other; agtagtatac aaatggttga cgctggacgg tcattttgcc caaatgacgt tttctgcact 60 tttcagctat tttaacgctt attttcatca gaaaagtgcc taagctcatc ggaaatcagt 120 catttttgaa aaacgacact ttttaggctg gacgtagaag tgaccatttt gcccaaatgc 180 gatttttgca gattttcaac attttaaaaa cattttaagg cttattttca acaattttca 240 aaaatggggg gaggtgtact ttgtagttta taaaaatgat aattaataaa tgcgcttttc 300 aaaagattta aagcttttaa caaatctgaa tctccttgaa ttagtagagt agactctctg 360 ggaatcaaga atttccgtgg tgtatttatg agagatactt tgcagagtga aggaattaaa 420 gaaaaagaaa cgtactataa atttggactc gattagctga ttccgttcag agtttaaaat 480 tgtcacaaaa tgataataaa aacgtagaaa aaaaggagaa tagtcatact attattaaaa 540 gaccaaataa aataaattaa ccaaagagaa ccaagaattt ttaaaaggaa taaacaccgg 600 ttatcaattt aaaactattt caaagcaatt ttttattctc tcgataaaat acgaaaattc 660 acaggaatca ccaatcaaat agatggcttt tcaatggtcg gaatacactt actcatgtta 720 attacattag tctttatatc gcgaacatat cgggaaatat ctccacttgt ttccaacctt 780 tctccgcttt ttaagagaaa ttcttctatg gcggatttag cttcttcgat tttccttatt 840 agcgaccagg tttccattgc ttcatgtata atttttcttc tttcctcacg tggcactctc 900 gtcataactt cggagataat tttggaatta ctgccatgtt gatttttcca aaaatcctca 960 atctgattat cggaaagtgt atagtcttct ttaggtgtaa ccctaaaacc gaacaagtta 1020 catttagaat ttttaacaaa acaaaaatta ccaaaaatcg atgattacgg gttctccttc 1080 atcattttga ccgtagttcc cgctattcgt cccaatatct tccagacgca agataaattg 1140 aagaaagtgc actaacatca aagcacgagg atttgcttct ttgaaagtca actgtttcgc 1200 tggtgtaaat ttgatctccc gagttccaat gtacaatgtc ttctttgtgg cggaagtttg 1260 tggaaatata aaatggactt caccgcagat ttggatcaac gatagtaact aaaaatgtga 1320 attaaaacta aaatgttatt cttgttcgag taattcaatg gaatacctta tagacgtata 1380 actcttggac gtacggtaga ctaatactat tatatcgact cgatatggat gaagaggttg 1440 gtcgtggacc acgttgatgg cattttataa aatagcgctg atccaaatca gaatgcttta 1500 catcacatac cagtccaatc gacatacctt cggttttatc taaaaaacca tttcattaaa 1560 atttttaagc ttgaaaaatg ataaatttaa acatgttgaa tttgtaaaaa aatttaaaaa 1620 acaaatacat agtatttata tcaacattat attacctgag aattttattg aaaaattcca 1680 agctcctcca gaatgcaacg ccaagaaata ttctcgaaca gttcctgtaa aaattattta 1740 gaaaaaaata aaaagtaaaa ataaactctg aaaatatagg taaatacata ctttctatcg 1800 tgtccttgtc tccttccaac atctcataga ctttaccgag gtattccacc caaatatcaa 1860 gtcgatctcc gcttattgga ccatattcca ttaatttatc cgacagtttg atcgcattct 1920 tgcataaatc gattttgtaa acacgaattc ctcccttttt tgtcccacgc tttgcaactt 1980 tgagaaaatc ctcccaaatc cgagcagtat cttcattagc cattttttct gaaacaataa 2040 atcgttaaat aatattcgtc aatataaaaa tcaaaatctc gtagcaagtc taatccgtaa 2100 caaaaaaatt gttgaaaaaa tatgaaacat aactcctaga attaaacgct gtttcaaaat 2160 ataaaataat tggggaaaaa cgggaactac agaagaaaag gaagtctctt ttctattcac 2220 aaaagttaat ggaagagtaa ggatgcaaga aaatgcgatg ttggcaacgt cccgtgtttc 2280 tctgcgtctc tgccttccac tctatcccaa cgcgtttgcg tgcgtctagt tcaagtggag 2340 caaatatgtg attgcgctcg gtcacagtga ggaagagaaa agaaggtcac acaaagagaa 2400 agggaacact gctgaccttt atgcgtcaca ccaaaggaaa aaacagaagg agaaagagag 2460 aactcgatga gtttggtcac acctaaataa ctttctcgaa ggtgctggca aacaggtatg 2520 aaaggacaaa gtgtctcatt taaaaacgat ttgcgtcgca gaatttcttc agtttttgtg 2580 ttgttatttc attttcaaga tgattttcaa gcggagttca atattttgcg gcgccaaaag 2640 tcaaatttat ttaattaatt tatcttcatt gcttagttaa aaattttagt taactttatc 2700 aatattggta tatatttttt tgcgtacggt attttttaaa ttcctcaatt atatatatat 2760 attagataag atggaggatg ctttttgtgt caagaaatct ctacttctcc atagaaagtg 2820 taaaagtgaa cagaaagaac tggtaagtct ttttttgtat gatacactag attattcttt 2880 atttgcaggt tttactacag catcaattta acgaaattga tgaatctctt cttatcagtg 2940 aaagatgtgt tcattaacaa gagattttat tatgtttaac gagaagaaag attcaacgaa 3000 ctactaaagg tgagtaatga acgtcttcag aataacaaca aagaatttaa atgaataaga 3060 tatatttcag caggaaatgt taaatgagca atcgaaattc tgagaaaaaa aagtatatgt 3120 aacgacttga agaatcttct ccggaggggg aaaagtgaat aatcatttga ttgttgttat 3180 ttttttgtta tttcatgttt gttgttattt tatcttggtt ttttttgaaa aagcaaaaca 3240 aatatcttat ttgattgaag tcaagtgaaa aaagttaata cctcaggtga ggtaggcatg 3300 tttggggttc atggctaggt ggaagtgaat tcactttcta gtgaagacat ccattttcac 3360 tgaacgtccc ccatttcaca aaatcaaata agatatttgt agccaaaaaa atttaacttc 3420 taaattatgg aattagtata ctgtttcaaa tgtaaaaaat atactgatac tactgacata 3480 tttaatgttg aaacaagctc gaaacgttct atgataaaag ggttatgcca agattgtaaa 3540 acaatgaagt gtaagctaat tccaacaatc acaggaggtt ctggattaga agatatcaag 3600 gaggttgaaa ttagtgaaaa atctaaaatt cttagacaat ccacaagttc cgaaggtgaa 3660 agagatcttt tagaaaaaac ttattactct cctgaatcag gattttgtgg agtcaacgaa 3720 ttgcaacgaa aaacaaagtt accaatcaag gaagtcaaag aatttctgaa tgaacaagat 3780 gtttacactc ttcacaaacc agctagaaag aatttcaaga gtcaaagagt ctttgtgaat 3840 ggaatagatg atcagtggca gtcagatctc gtagaaatga ttccctacga gcaagaaaat 3900 gaaggatata gatatctttt aactatcatt gattgttttt caaagtttgc atgggtagta 3960 cctttgaaaa gtaaaagtgg taaagaaact gcagatgctc tttcttcagt ctttacaaag 4020 agtaaaagaa aacccaaaaa gatgcaaact gataatggta aagaatatta taatactagc 4080 atgcaaaaat tatttaaatc attagaaatt aatcacttct caacttattc agataagaaa 4140 gcttctatta tcgaaagatt taatagaacc ttaaaagaaa agatgtggaa gatgtttact 4200 catcaaggca atcataagtg ggttgatatt cttgatgatc ttgtgttagg atataataat 4260 cattatcaca cttcaataaa aatgactccc acgcaggctt caaaaataga aaatgaaaga 4320 attgtgtata ataacttatt tccttcgaaa ttagaaggtg aatctaataa taaaatagaa 4380 aattctacaa aattcaaaat aggtgatact gtcagaatta caaaatataa agctattttt 4440 gataaaggat atctaccaaa ttggagtaca gagtaattta agatttcaga agttctaata 4500 ggtgatccaa ttatgtattc aataaaagat ttagcagatg aggaaattaa aggaaagttt 4560 tactctgagg aacttacact ttataataat gtcaaagaag aatataaaat agaaaaagtt 4620 ctgcggaaaa gaaatagaaa ggaaaacggt aagatggtaa aagaaatatt tgtcaagtgg 4680 tatggatatc cagataagtt cgattcttgg attccagaaa tagatatgaa atcctaaaca 4740 taaaggagtt atattaaata ctgacaactt taactctatt atccttgatt tcaacaatat 4800 tttctgatag aatcggacag taacatttag tactttgagc aatgttttta gcgaagctgg 4860 cttttattgt aacatcaggt cgagatgcaa tgattctatc attctgttta gatacatcaa 4920 atactagaag tggataatag taataataaa catcttcttc catgaaaatg taatccttga 4980 tgctttcgta ataactattt ctgaattctt ttgcaaaatt gtattgttgg accgcattga 5040 acttatcaaa atcaaacttc agacattcgt atggatacct ctcactattg agttccacat 5100 aaatttcttc taactcacaa ttatcaaact ttgcagcatt cagataattg ttatctctag 5160 cagtttgaaa agctatgaca aggtatttta ttttatcata tttagttcct agtttccaag 5220 tgaattcacg attaccatta ggaatattat aactctcaaa ttgtcgtgaa ataaaaggca 5280 tttgaactaa tttattactc tcaaagacat tgagtaactt attttgcatt tctagactaa 5340 gcataatttt aggaattatc cattgaagtt tattaatagt catcttagca gtaaatttag 5400 taggatctgt tgaagggggc tatatgagtt aaggggtgcc actcaaaatt ttgattttta 5460 cgccattttt tccacactcg cgtgacattc cacattttta aaaatattgc ttttccggaa 5520 agcttcgtag tcctatttct gaaacaaata aacattgacg gagaattgtt taaaaacaag 5580 attttcttgc ctaagcctat tattttggac aaggaatgaa acaaaagttt gaaaaatttc 5640 agtcaaaaaa taattaaatt cgcgaagata aatgaacatt tccacatgtt tcgctcaatt 5700 tttaaaaaat ttttgtttaa aacaatagac ttaggtgaaa acgctgtttt cctcctgcca 5760 agacctatgt ttagaagaaa atgacgaagt ggaacattga gagaaaatga cgagaatggg 5820 agaagaatta tctgacaaaa atcaagaaaa atgcgttctt ctagcgaaat tttgaacagt 5880 ttttacacac aaaaactcaa aagacgaaca aaaaacttga aaattcatcg aaaaaacaat 5940 aaaactggtt gaaaaatcga aaaaaggcca acaaagttga tgaatcgttt gcgcttttca 6000 caatattata gaagtacgca gtgtggcggg agagtgtttg cggatgaggc gagcagtttt 6060 gcgcggaagt tcaatttacg taaaaaaaat tctgaaaaaa atatggttaa aaaaagtgaa 6120 aaaaaattga cgtcaaaaat tatttttttt ttcaaaaaaa aacgtcaaaa aaatttccgg 6180 aaaagcaata tttttaaaaa tgtggaatgt cacgcgagtg tggaaaaaat ggcgtaaaaa 6240 tcaaaacttt gagtggcacc cctcaactca tatagcgccg ttgaggtaat actattctta 6300 ttttctggag atctgtagag tgaaagagtg tgtttgcttc cgtaaattat tcgattgtaa 6360 cactccgaga atccaaaaat atgagtcagt ggaatacaaa aagtaagtaa gccttttcta 6420 ttcttagtgt atttattaat cttataattc ataatatcct ttgtctcaag gatccaacca 6480 aaagtatttt gtttattcat tgtggaagaa taagtaagga ggcctttcat aagtgaagct 6540 cttcaatgac attttcaact tgcataccat ccatactata agttgctcta tcaaataaaa 6600 acattggagc attgttggag agtgtaactt catcagcttc cactaaagct gtagagtcta 6660 atttagtcaa ggaagcttct aagtagatgt aagatttatg tagtaataaa tttgcaatga 6720 gattctttga ttctggaaat tcttcaagct atttaattgc aactccaaaa gagaaagata 6780 aaatacaact agttgaaaat ccagttcaag aaaaaataga aatagaagat aaagtgagag 6840 aaggaggaag tattactcaa aagtcgaaga cttctagatc caaaggattg acaaagtcga 6900 agacttctag aaccgaaggt ttgaataaaa agaatgcaga ctttcttaga gcattaaaga 6960 aaggaaaacc tagcgaagga tcaggtttca aaaggatcta agatccttcc ggaacctctg 7020 atttttaaaa gaattgaatt tttattattc catttttacg ttttaaagtg taattctata 7080 tgaagatcac acttattgaa gtcaataagg ttatttttat cgtccactaa ttttaatgtc 7140 aaagtattac aattattaac acttcgatga tatataaggt ttattggttc atattttact 7200 tctccattag aacctaaagg aaacttgcaa attatgttac tctgtctttc atcaatgatg 7260 gtatcacaaa taagattaca ggatagataa atgaaattgt ttactttgaa attagaagta 7320 tctaaaattc catcaatacg aacaatacta atactactaa ttttcaaatc ttgtggaaat 7380 tgaaatgtct tttcatttgt tcgatataaa tttaagaaga gacttgtcat tctctttatt 7440 taaataattt attttatctt aaaattttca aatactttaa atactgtgaa atcttgagaa 7500 aatgacttct gaaaaagaag aatttgcaga ttattcagtt aaaaattatt atccacttcg 7560 taacaataat cctttgcttc ctcaatcaat aagaggatgt ataattggta agagtggatg 7620 tggaaagact aacttactaa tgaatttact tttggatgct tacaaaggag aagaatacct 7680 tgattacaat aatttgtata tttttagtac aacattattt caaccttgtt atcaagcatt 7740 aattaatgga cttagtgaag gattaagtaa aaaagaaatt agagagtgtt tcaaaaaaca 7800 agacttcata attgtggaaa aagaaattgt aaaatcaaca ataaacgttg tgagtagtga 7860 ttctttacaa gatatcccag atccttcatc attagatccc aataaaaaga ctttaataat 7920 ttttgatgat cttttattag aaaaacaaaa taaaatagaa caatattata caagaggaag 7980 acactccgga gtggattgtt tttacatctc tcagaattat ataaaacttc caaagaatac 8040 aattagagag aatgctaact tcttcatagt atttcctcaa gataagatga atttagatta 8100 catctacagg gatcactgtt cagaaatcaa gaaagatgaa tttcttgaat ttacaagaga 8160 tacattcaag gagaaatata attttttaac aattgataaa tctagtgacc ttgatgatgg 8220 aagattcaga aagtgtttga aatattttta cgtcttttga ttacaaaagc ctaggaaaac 8280 ttcgattttt ttttattctg aagattttga caatcttttc taaaagaaaa tccttgaaat 8340 tttcaatttt gaacacttct ctgaataaaa gctatctgtt cttctgttgt tctctttttg 8400 atcaaatttt ttttcttctc tttagtaaga ctttcacact ctggaaaatt tatcttactt 8460 ttagaaagac aataccttcc actagcatct ctttttagat cattcacaac tcctttagaa 8520 ttatgaggaa tattattcag tagtagatac tttttgattg ttttaggtga tattcctgtt 8580 ttcttagaat aagatgaaat actattcatt ttaaaatcat atattttcag ctcttctatc 8640 aattgttgta cttccattta tttagaaaat tattttcctt tttactttac tttactttat 8700 tactttactt tactctatta acttacccta ttgccatacc ttattacaat attactttac 8760 tttattactt cgaatttttt accgtaataa atgacagagt tgagactatc cagatttata 8820 aaagatgtac aaaaaattaa tggatcatca aatgtagact tgacagaaat aagtatgtat 8880 acgaaaaatg aaaatactag agaaactgct cagaactatt tagatgccat tgaaaatatg 8940 ataaccagtg tagaaagttc taaaatatct gatgcagata aaacagctta taaatatgca 9000 tttactgaat ttttgattaa gaagtgtgaa agtgaatgta aaagtattat aatcaatgtt 9060 tccaagattt ctaataaaaa gaaacaactt ttaattgaac aattacatcg cgactttcaa 9120 aaagaaagcg acgagcataa tgaacttaga aagaaatata atgaaaaact gaaatcccag 9180 agtgtagaaa ttcctactat tgatttagca attactttga aaactaaaaa gaccttatca 9240 aataaggaat gtcttgattt tctaaatgat ttggagttag aagataagca atatggagaa 9300 aagtataaaa gagtaggagt tccaggagaa ttttcaagtg tttcaagagc atatgtcaaa 9360 aaaggtagtg gatcagagaa taatattatt cagcgtcagc aggtaagcag cgtaagcaaa 9420 gcttcctaga agtgaaaaac ctgctaaata attcttttaa atacgctcta aagaccaata 9480 cccatttgaa aaatactttg gtcattacga tttacaatcc gatacctaaa taaatacttg 9540 gtaaatcttt cttttttatt tttctcctac gaattaattc atctaaaata gcatggattt 9600 tgttgtattc cccattattt ccagcttgat aagaaccaat actcaatctt aattgatcca 9660 tcagatcatt aatttttggg ggtagaaaac ctatgatttt cctagaatct ggaattggat 9720 taatcgatga tccactttga gtattttgac tactttgagt tctagaagta aaataattat 9780 cttttatgaa tttccattta tcacttgcat cagcattata tcttttacta cttttatcaa 9840 atttttgata cagtgcatct gaacaaagta agatttctcg ataattttga gtatcatcat 9900 tcttaacttt attgagatct ggagatttct tagttagtaa ttccattaaa ccattcggtg 9960 caatgtatac ataattattg atttccatcg tattatcatc aaatattatt tctttatttc 10020 caattgaata gcctttagta tcattattat accttattga atatcctgca ttacttttat 10080 ctctaggatc ttgtaagtaa gtagcaatta agttggaaac tttgattaca gattcagaga 10140 atcctagaac cttcggttcg tttgaatgat cttttggttt tggactacta gattgaattt 10200 gtttagtagg agttgctaat tgtggtaaaa tttgttgttg tcttggagaa tccctaaatg 10260 aattaagagt ttgaactatc ttattctttt catcaatgat ttcttcttgt agtttcttat 10320 ttgattctag tatgggtttg aatacttcta tacggtgatc ttctacgttt tctaaattgc 10380 tgcgctcttc taaattcttg aatttgtgtt cttttctatt cttcaagaat gaatttatta 10440 tctcattcct tttcttggga tcatagattt ctactgaagt tggagacatt ttttgaaaaa 10500 gtaatttatt taaattcgaa gaatccggag atttacaatc tttatttaaa ttcaaagaat 10560 ccggagattt acaatcttta taaaaattat tgtatttata aatggaagaa attactcaag 10620 aagtaagttt ccaagatatt tctttaaatt caacacctgt tgaagaagaa gatctaaaga 10680 aaatgaaaag agatgaagtt cgtagaaaag ttgcaatgat tggaagtgaa ttaagaaaat 10740 acattctcaa atccaaaaaa atccaaacta tgagaaaaca agagatgatt gattttatta 10800 tgaagttcaa agacattact tcactgagtt agaaatttag atttttcttg aaaaattttt 10860 ttctatataa aaaggaagtc tgacatcctt ctaagctttt gaaaaagtaa ttacttctga 10920 aaaaatggat catttcgaaa aaatgtcaag agatgatctt cgtaaagaag ttattaaact 10980 tcttgatata atgtccggag gtgtaaaaag taaaagaatc ctcaaatcac aacaattaag 11040 atctatgagc acttcagaac ttctgacatt tattagagaa catttacaaa taaaccaagc 11100 tgaaattaga gatgttccac ttacgcttaa ggaagtattt cccttcgaag atcttatttt 11160 tagtgattac aaagaaacta aaaaaggaat tgtaagaact accgtgtata gaaacaaagg 11220 caaagaaata tattttgaaa aatactttga cctttttgag gaaagaggaa ttgaatatta 11280 tatgaaaatc atcacaaaaa ttataaattc tttctttgaa aagaacgaaa attttgtgat 11340 caatgatatt cgaagtgata cttcagttaa aatatatttg aaactagaat tcaagcaaaa 11400 gaaagactct caaaaaagtg aaaactttgc tgtaagatca gaaactaagg aattgtgtgt 11460 tggtgaagat cgagaagaat ggtatcaaca tgcatgtcaa gaactgatga tgaacatgga 11520 gaatttgcaa tcaagaggtt ctggttggac tatttcagga ataaattacc ttgagatgaa 11580 ccagactatg tgtcattcac ctagtggtta tttctacatg gatcttccaa aatgtattaa 11640 tgctaaacat tgcgtcatta atcctaaaaa taatgatgac aagtgtttta tgtggtctat 11700 attagctcat cttcatccag caaaacatca tgtttcagaa atttatagtt acactcctta 11760 tcaaaatgaa ctaaactttg gagatctaac ttttccaatg aaaataaaag atataaataa 11820 gtttgagaaa atgaatgatc ttgttgtaaa tgtggtagaa tgtactgaaa aaggacaaat 11880 aaatccatta cgtccttcaa gaggaatcac tgctgatgat agcaaagtta tcaacttatt 11940 atattatgaa aataaagaag gaaattcaca ttactcccta atcaaaaatc ttgataccct 12000 tatgaataaa cgaggagagc atcaaaaaaa gttctgtgtt agatgtcatt gctcttataa 12060 tgtaaatatg aatgataaga ttagatcaaa ttatcacaga catttagagg actgtggtaa 12120 aaacaaaccg gtttcacaca aactatccaa gaaaacctct gtaaagttca aaaatatcag 12180 taatacacaa aagcatagat acgtcattta tgcagacttt gaaagtatca ttgagaaata 12240 tcaaagagca ctagataatc caaatatatc ttggactact gatgttggaa aacacattcc 12300 agctggattt tgtgtcatag tagttgattc tttcaccaaa aaattgtata gtatcaaatc 12360 ttatattggg cataatactg cgctagaatt taataaatac atcattaaaa tatttcaaga 12420 aattatgcat ttaagtgatg tggaaatgag agaattaact gaagaagaat ggactttcca 12480 tgatgagaat aaagagtgcc ctaattgttc aataaagtat gattctaaag aaatgaaaac 12540 gactaaagtt agagatcatg atcatttgac tggagaatat cgtggacctc tttgtggagc 12600 atgtaatcta ttgaaaagaa aaaatacctt cattccgata ttctttcaca atcttagagg 12660 ttatgactct catctgattg ttggatgtct tgaaagtact aaatatttga atgagcatga 12720 aattgacatc aaaaatattt ctagtaacac agaaaaattt attagtttta gttacaagtt 12780 accttcagag acagataatg tatatgatag atgtgaatgt agatttctag attctttttc 12840 tttcatgcct tcttcactgg ataaacttgc tagcaacttg agtgaagatc tttttcatat 12900 tagtagagat tattactctt cttccaaaaa aaaattcgaa ttgatgcaaa gaaaaggtgt 12960 ttatccatat gagtacatgg attctttcaa gcgatttcaa gaaacaaaat tgccaagtat 13020 ttcagcattt tatgattatc taaatggtaa aaaatgctcg caaaacgatt atctatatgc 13080 taagttagtt tggaataaaa tgaactgtaa gaattcagaa gattatactg aaatttatat 13140 gatcaatgat gtccttctct tggcagatgt ttttgagaat tttagaaact tgagtctccg 13200 tgtttatgaa cttgatcctt gttggtattt cacaagtcct ggattagctt gggatgctat 13260 gttgaaaaag actaaagtgg aattagaagt actccaagat gttgagaaat acttgatgat 13320 tgagaaggga ataagaggtg gaatagttaa tgctgttaaa agatactcta aggttaataa 13380 taaatacact aatacttttg atccatcaat tccttcaaat tatctattgt acttagatgc 13440 caataattta tatggttggg caatgtgtca aaatttacct actggagatt ttcaattcga 13500 aactcaatct tcaattgata ttctcaatga tgagagttta aaaatagagg actatattga 13560 ttatttgaaa aatttaggta aaggatgtat tttcgaagta gatttggaat atcctaaaaa 13620 tttacactca aagcacaatg attttccttt gtgtccagaa aatgtaaaaa ttaataaaga 13680 atcaaagatt cccggaacca taggttttaa gcaaacagta aaaaagttat gcaatacctt 13740 attcgataaa gaaaaatatg taatccatta taagaatttg ctacaatgtc tccaattagg 13800 tcttaaagtg aaaaaaaatt catagaattc taacctttaa agatagtgat tggctcaaag 13860 aatatattga aatgaacact aatcttcgaa aacaagcaaa caatgagttt gaaaaagatt 13920 tcttcaaatt aatgaataac tcagtttttg gaaaaactat ggaaaatgtt agagaacgaa 13980 ttgatgttcg tttagttact gatgagcata aaatagttaa gcttgcttca aaacctaact 14040 ttaaaagaac cattatgtat aatgaagagt tatctgctgt agaaatggag aaaaccaata 14100 taacacttga taaacctatt tatgtcggtt ttgctattct agatctgagt aagtggttga 14160 tgtatgattt tcattataat gtaatgcaga aaaagtatgg atatcaaaat gtagagttat 14220 gttatcaaga tactgacagt ctcatatatg acatcaagac tgaagatttc tacaaagatg 14280 cggaagaaga tatagatttt caaaaatatt tcgattttag tgattatccg aaagatcatg 14340 tattatactc agaagaaaat aaaaaagttg ttggaaaatt caaagatgaa ttgaatggta 14400 aaattatgac tgaattactt gctttaaaac ctaaacaata tggttttaag actctagatg 14460 gtgaagaaac taagaaaagt aaaggaataa agaaaaatat tgtcaagaat gaactgacac 14520 tcgatgatta taagcatagc ctttttaata agagtattat taggaaaact caatatacta 14580 tcagaagtgt taaacacact attttcacac aatgtcagaa taaagtagct ctcaataact 14640 ctgaaaattc tacagaacat aaacgttaca taataaaaga taatcactcg acaatggcat 14700 ttggaaatgt gaatatcaaa ccggaggttc tgggaatctg agattcttgt attaaaccga 14760 atcttttata gaaatgataa aacaatattt tgaaagtctt tagtttctag tagtttcaga 14820 agaagtaagc aataataacc acagtgatga cttgcgaagt cttgaatttg aaatgttgaa 14880 ctcaatattt ttattttatc ttctccattt tttaaatatt cttgaagttc taaaggtgga 14940 tctaatccga acgaatcaaa gtaatatatt ttatctttat ttttggaata acaaacccaa 15000 tgtgttcctc taccttcaga agaatctaaa tttacaatac ctacttcttt atctttcggc 15060 ttcgctggta aagtatctcg cataaacaca ccacggaaac tcttgattcc taatgtgtca 15120 attaattcaa tgagatctag atttgttaaa ggctttagat ctttttctag cttcgccatt 15180 tattaatcat catttttata agaaactaca aactacacct ttccccattt ttgaaaattg 15240 ttgaaaataa gccttaaaat gtttttaaaa tgttgaaaat ctgcaaaaat cgcatttggg 15300 caaaatggtc acttctacgt ccagcctaaa aagtgtcgtt tttcgaaaat gactgatttc 15360 cgatgagctt aggcactttt ctgatgaaaa taagcgttaa aatagctgaa aagtgcagaa 15420 aacgtcattt gggcaaaatg accgtccagc gtcaaccatt tgtatactac t 15471 // ID DNA4-2_CB repbase; DNA; CBR; 267 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000095; KW DNA; DNA4-2_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-267 RA Pavlicek A. and Jurka J.; RT "DNA4-2_CB - a family of DNA transposons."; RL Repbase Reports 6(4), 169-169 (2006). XX DR [1] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC DNA4-2_CB contains 13bp-long TIRs and is flanked by TTAA target CC duplications. XX SQ Sequence 267 BP; 49 A; 72 C; 65 G; 81 T; 0 other; aggtgggggg acaggagatt tttcgtagtt tttttgtagc tagagtatgc attctaccgt 60 gacggtgtac aacgcttaat gtcactctgc gtacagctgt cgtcctcgcc tttatgtatg 120 caatcgggcg tgcgctttct ctttgcccgc gtggctcagt cggtagcggc gccgcaccct 180 caatcatcgc cctcacaagt tcaactcctc gaggggcatc tttgaacgga atttcgagaa 240 cattattttt ttcatgtccc cccacct 267 // ID DNA2-11_CB repbase; DNA; CBR; 678 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000096; KW DNA; DNA2-11_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-678 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-678 RA Pavlicek A. and Jurka J.; RT "DNA2-11_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC DNA2-11_CB contains 179bp-long perfect TIRs and is flanked by TA CC target duplication. XX SQ Sequence 678 BP; 190 A; 139 C; 123 G; 226 T; 0 other; ttgtcaattc aaaaagatcg caccggtgaa cacacaaaca aacaagtaaa caagggggcg 60 gagcgatccg ccccttttcg caaaggcgcc gcgcagtttt tcgacggtat tttagcgatg 120 ccgttttttg gtaatttttc atcgaatttc ttccgaattg aaggaaattc gtcgattttt 180 ttctaattca tccatcatct aataagaaaa atcgccttct ggtatcacaa ctatgaagaa 240 gtgttgaata atctgcggtt agtcgacaaa ttactctaaa tacttctccg atcgagtttt 300 tcaggttttt caggaaactt tgcaatgata atttatgtat ttatgtgatc tcgaagcttt 360 tctacttctt attttcatca ttgcaggatt cgatacgtca catggtcttg ctcttttcat 420 tttcaccctg aatcaaagaa tagtgtttcc caattgtgtt tctcagtttt tattaaaaca 480 aagttatata ttccttcaca aaatcgacga atttccttca attcggaaga aattcgatga 540 aaaattacca aaaaacggca tcgctaaaat accgtcgaaa aactgcgcgg cgcctttgcg 600 aaaaggggcg gatcgctccg cccccttgtt tacttgtttg tttgtgtgtt caccggtgcg 660 atctttttga attgacaa 678 // ID MuDR-16_CB repbase; DNA; CBR; 259 BP. XX AC . XX DT 30-JUN-2005 (Rel. 10.06, Created) DT 30-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE MuDR-16_CB - a family of nonautonomous MUDR-like transposons. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000399; MuDR-16_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-259 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), E45-E45 (2003). XX RN [2] RP 1-259 RA Pavlicek A. and Jurka J.; RT "MuDR-16_CB - a family of nonautonomous MUDR-like transposons."; RL Repbase Reports 5(6), 156-156 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~95% identical to the consensus. CC MuDR-16_CB contains 7bp-long imperfect TIRs and is flanked by 9bp CC target duplications. Related to MuDR-11_CB. XX SQ Sequence 259 BP; 87 A; 52 C; 49 G; 71 T; 0 other; cagtcccaaa tacgagtggt aaacaccccc tgatattttt tgaaaacttg aaaaagacgt 60 aaggggggac ccttatgtaa tatacaccta ctgatatttt ttgaaaaatt gagacaaaac 120 actaaagggg ggacccttat gaaaattttc accccctgat atttttggaa aaaatgcaaa 180 aagcacataa ggggggaccc ttatctgatt tttacaccca ctgatatttc gtcggccaaa 240 ttttcagtat cagggcctg 259 // ID MuDR-15_CB repbase; DNA; CBR; 272 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 02-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000361; MuDR-15_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-213 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-272 RA Pavlicek A. and Jurka J.; RT "MuDR-15_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 89-89 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 91% identical to the consensus. MuDR-15_CB CC contains 8 bp TIRs and if flanked by 8 bp target duplications. CC Similar to MuDR-9_CB and MuDR-11_CB. XX SQ Sequence 272 BP; 86 A; 68 C; 39 G; 79 T; 0 other; catacttgct aaatctcggc ccggcgcccc gggttccgaa aatttcaaaa tttttctgtt 60 aatttttgat acatttttgt caaaataatc attttaaagc acgaaattta tcccatgacc 120 cttcttaaac ctgaaaacaa agaaattttg ataaaatgtt cccaaaaatc cagttttctc 180 tcaaaaaatg actcttaaaa atttttgcct caaaaacccg ggccaccggg ccagtgaaaa 240 ttcctccacc ggcccggccc gcgacatgta tg 272 // ID MARINER9_CB repbase; DNA; CBR; 392 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000058; DNA; KW MARINER9_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-392 RA Pavlicek A. and Jurka J.; RT "MARINER9_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 88% identical to the consensus. CC Distantly related to MARINER2_CB. MARINER9_CB has a CC palindrome-like CC structure and is flanked by TA target duplications. XX SQ Sequence 392 BP; 118 A; 76 C; 70 G; 128 T; 0 other; ttattcttgt ccggcgccga tgaaccttgt ggccgaaaat ttatttaaag gcgcatcgcc 60 ggtcctgaag cgaaaacagc tacggttttt acaaataaat tcatgcgcct ttgatacagt 120 acttcggaat tattttattt ttgcctattt ccctcagatt ttttgcttgt tttcgtttaa 180 attcttcaga ttctcatgaa taatcagctg aatttcctta taaagtagaa aaacagccta 240 aaatgggtca aaataaaata attccgaagt actgtattaa aggcgcatga atttatttgt 300 aaaaaaaccg tagctgtttt cgcttcagga ccgactatgc gcctttaaat aaattttcgg 360 ccacaaggtt catcggcgcc ggacaagaat aa 392 // ID DNA2-7_CB repbase; DNA; CBR; 257 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000066; KW DNA; DNA2-7_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-257 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-257 RA Pavlicek A. and Jurka J.; RT "DNA2-7_CB - a family of young nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >99% identical to the consensus. CC DNA2-7_CB contains 67bp long TIRS and is flanked by AT target CC duplications. CC The central part similar to Cb000275. XX SQ Sequence 257 BP; 90 A; 47 C; 38 G; 82 T; 0 other; ataagaagga gcgattttca aaattttcaa ttttcatccc aaatcacttc gatttccaaa 60 atttctgtga agtttcagta aaatcacgtg aatttccaaa atcccagaac tcgaaccgtt 120 cgagttctgt gaaaaatccc agaaattgca acgttcaatt tctgtgaatc acgtaaaatt 180 tccaaattcc cagaaatttt ggaaatcgaa gtgatttggg atgaaaattg aaaattttga 240 aaatcgctcc ttcttat 257 // ID MARINER51_CB repbase; DNA; CBR; 725 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000369; DNA; MARINER51_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 319-725 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-725 RA Pavlicek A. and Jurka J.; RT "MARINER51_CB - a family of mariner/Tc1-like transposons."; RL Repbase Reports 4(11), 300-300 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER51_CB Contains ~175bp-long imperfect TIRs and is flanked CC by 3bp target duplications TNA. C|TNA|G insertion motif. Similar CC to MARINER47B_CB. XX SQ Sequence 725 BP; 228 A; 126 C; 133 G; 238 T; 0 other; caagggaatg tcgttcagaa agctcttcag aattttctct aaattggctc atttatagaa 60 tcgagtatgg gcttttacgt aataatagtc tctacctgca aaaatcgctg aaactcgaga 120 aaaatcgatc tgaaattata gcatttccac cagtctcatc gcctcccttc tccggtagct 180 tagggctata tttttatttt tcttattttt tcaaacttaa aaagtcgttt tcgaggggtt 240 tggcaaattt gagaatgatg tttcccttct gaacgtttga aatacttttg cacttctgaa 300 aaaatttcaa aattcatgaa aaaaattttg ttggtgattt ttttcaaaaa aaattttttt 360 ttgaaattat tcgaaaatca ttgcagatca tagaaaattt tcaaaaaagt gtttcccatt 420 tgccaaaccc ctcgaaaacg actttttaag tttgaaaaaa aaaataaaag aacgaggacc 480 cgaacctgca tgtgtgcttt tgtggtcctc cctgctagcc atgttttact cttgcacgca 540 atgcagtgaa gaaaggggag gagaagggag gcgatgagac tggtggaaat gctataattt 600 cagatcgatt tttctcgagt ttcagcgatt tttgcaggta gagactacgt aaaagcccat 660 actcgattct ataaatgagc aaatttagaa aaattctgaa gagctttctg aacgacattc 720 ccttg 725 // ID MERLIN6_CB repbase; DNA; CBR; 813 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Cb000278; DNA; KW MERLIN6_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-813 RA Pavlicek A. and Jurka J.; RT "MERLIN6_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(9), 241-241 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC MERLIN6_CB contains 20bp-long TIRs (~180bp imperfect) and CC is flanked by 8bp target duplications. XX SQ Sequence 813 BP; 294 A; 141 C; 132 G; 246 T; 0 other; ggcgctatgt tggttggggg ccactctttt tttaattttt tggcattttc tgacttgcgc 60 attaattcta agcatgttaa aaatattttt gaggtgtctg gacctctaga aagtataaaa 120 taatataata aaatacaaat tcatgttatt tgcttcttta ttttaggctt aggctaaaac 180 gcacgcgcta gcgtagttgg gagggcaccc aaattttttg aatttagcgc cattttcgta 240 tgtcccagtg aaaagaaaac aaggagtttt tgcctaagct tataattaaa aaaaaaagaa 300 aaaaatttaa aaaaaatttc agccagaaaa atactgaaat tggcgaaaat cagtgaaaat 360 cgcacatttt ggctgaaatt tttttttcaa aatgtttggt ttttgtttaa aattataggc 420 ttaggcaaaa acaccttgtt tcccttcctc agggacaccc gcattttggc gccaaattca 480 aaaaatttgg gtgccccaac tcacaaaagc caaaataggt gaaaaatgca aatcacataa 540 aaaatgctga ttgagaatgc ttcatttccg aaaaacttac ccgagaatcg gtttaaaagt 600 tcaaaatatt catatttcaa gtgccaaggc gttttagcct aaacctaaaa taagaaacaa 660 aaaacaggaa tttgtatttt attatattat tttatacttt ctagaggtcc agacaactca 720 aaaatatttc taacatgctt agaattaatg cgcaagtcag aaaatgcaaa aaaagtcaaa 780 aaagagtccc ccccccccaa ccaacatagc gcc 813 // ID MARINER52_CB repbase; DNA; CBR; 1085 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 21-SEP-2005 (Rel. 10.1, Last updated, Version 2) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000028; DNA; MARINER52_CB; mariner/Tc1 superfamily; KW MARINER47B_CB. XX NM MARINER52_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 7-867 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1085 RA Pavlicek A. and Jurka J.; RT "MARINER52_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 301-301 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MARINER52_CB contains ~175bp-long imperfect CC TIRs CC and is flanked by 3bp target duplications TNA. C|TNA|G insertion CC motif. XX SQ Sequence 1085 BP; 368 A; 196 C; 186 G; 335 T; 0 other; caagggaagg tttttcagac aacggttgag aatttgctca aaatttgtac aaaggtactt 60 tcgaacatgc tgaatccgaa tccaaaaaaa tttttagccc gttctcaaaa ggagccgaaa 120 tatggcctct gaaagtgctt ttagtactaa attttggcca aaaacatgca tttttcgagg 180 ttaaaaatta gtttttcagg atttgcttga gtgcgaaact catttttgga catttttcta 240 tcttctaaag taacttttaa acattttcaa aaaaaaattt ttttttgaaa aattttgaaa 300 aaaatcacca tggggtcccc cacactttga aaatgatttt ttgaaaattt tttgaaaagt 360 gcgaaaaaac gttccaatta ttcagaaacg ataaaaatag cattctgaca aattttttca 420 gcccaatgtt gtctttgggc tcaaaaaatc tccaaaatct gattgttgtt agaactttga 480 cagttcctaa tttctgaaat atcgcttgaa cttaactgaa acctatagaa ataggttcga 540 atcttgtatg tgatcgattt gacagtactc cacctcaaaa agagcaaaat tgagcaactt 600 tcagagactg aaattttcgt ttttaacgat acgaggatgt aagaaccggt cgaaaagacc 660 attatctatt ttttcctcaa actctcatga aatctttttt ttttttgaaa acttttgaaa 720 ttaatcaaaa agtgtcatat agtgcctagg ggggcaaact tggaatcaaa aattagtttc 780 aaaaaatgca aaaaaagttt taccacagtg ggggtcgaac cagcatagtc aatcctaatg 840 agtcaccctc ttaccacaac accacacaac cgatattttc ctctcacgcg gaattggtag 900 aggagggaag gggaagccga aatccccagc gcaccgaaat cggcccaaat tttcagacaa 960 agtttttcgg cctgggagtg agaacgggct aaaaattttt tcgtcatcgt atagagcatg 1020 tcttaaacta taagtatgca aattttgagc aaattctcaa ccgttgtcta aaaaaccttc 1080 ccttg 1085 // ID HAT4_CB repbase; DNA; CBR; 404 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000326; DNA; HAT4_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-404 RA Pavlicek A. and Jurka J.; RT "HAT4_CB - a family of nonautonomous hAT-like transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC HAT4_CB contains 16bp-long TIRs and is flanked by 8bp target CC duplications. Distantly similar to HAT5_CB and HAT3_CB. XX SQ Sequence 404 BP; 88 A; 99 C; 67 G; 147 T; 3 other; ccagtgttga gcggaattcc gtcttccgtc ttccgttttc cgtcttccgt ggtttttttc 60 gttccgtctt ccggcttcct ccggaaaaat ttgngtcttc cgtcttccgt cttccgtaaa 120 ctccggaaaa atcacaaaaa acggaagact aaaatttttc aggatttgtc gaatttttag 180 tcaaattttc caaaattctt tcggcggatc cgtctaactg caaaaccgat gcgaaaattc 240 gattctaacg tattgtccaa ttcaaaattt ccaagtttaa ttattagatt ttccgtcttc 300 cgtcttccgt ggatttnctt nttccgtctt ccgtcaaaaa agtttttttc cgtttccgtc 360 ttccgtcttc cgtgaagcga aattgtattt ccgctcaaca ctgg 404 // ID DNA8-12_CB repbase; DNA; CBR; 2733 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000257; KW DNA; DNA8-12_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 67-735 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2733 RA Pavlicek A. and Jurka J.; RT "DNA8-12_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(5), 215-215 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. TIRs similar to MARINER11_CB, and MARINER35_CB, CC however, this family have 8bp long TSDs. XX SQ Sequence 2733 BP; 846 A; 458 C; 479 G; 950 T; 0 other; acacgcgccc gtaaatctac ggaatggggc atgggttttc cccagaatgg ggcatgaggg 60 gttttttttc gatttttcgg acttttttct cccttccaaa aatccgatgc ctcgagcgag 120 gatcgaactc gggtcgatcg tttcacacac cggcgtgtaa accagtgcgc tattcgatcg 180 acaaaatttc tagttgtttt tgatatataa ataacttctt attatcgtca cgtgaaaatg 240 cgaaaaatcg tttttctttt tcgaaatttt gataacggtg aataaatttg atagttgtaa 300 atacttaatg gttccttata ttggtggatc ttctcagtca aaaaatctaa atttcgtaac 360 tccaattcaa ggattttcgg aacggatttc gggattccaa aaattccgaa tatttcggga 420 atgaaattcc ggtcagaata tttccgaaag aatttttcgg aatgaaattc cgaccggaat 480 atttccgaag ctttcttttt gaaaatagag atttttggac tacggtatgt cgcgaaaaga 540 ttgcttgcgg gcagaattcc ttcaattttt tgcgttttca aagtcttttt gtctatttca 600 cagctttttt ggtgttcttg tggtgaaaaa atagaatttc tactttaaca ttggaacttt 660 cgaaaattcc gatatttcga aaatttcaaa atcggaatat tttgaaattc cgaatattta 720 aatattccga aaattccgaa attccgaaca tttaaaaatc ggaataccat atttcctcta 780 atagaagccc accttctaac agaaatttgt gcagctcaca agggaagtac ccgaagtgtc 840 ccctcgcttt ttcttagata ttggtggcaa aaaatgtccc ttcctcggac tagcacaaaa 900 cagataatat aaggtgccaa taggcaggtt gagcagaatg gcaaaacttt ttgtgttttt 960 tcagaaatag tggatcaagt tcattcaaaa aagcataact ttgttcagag caaaaataaa 1020 attataaact aacatatttc ttgtagaaca gattacaggc tacaaaaaac ataacaacct 1080 tattctatct ttgaaaaaac tttctaggaa gggaaatgtc caaatggtcc gataatgtga 1140 aatcaaaaaa tgccgatttt cgaaaaaaca ccttcgggag actatgtcta ttcaattcct 1200 ttcatgtcat aatgcacaac tgtggtctca aatatatagc tcaccgttca ttcaagagag 1260 atttttgaat aaataaattt ttaattcaat tcttttttta ctcaattttt ttaaactcaa 1320 agaaactaaa ccaactgaat ctttcattct cagagctttt atgttgtatg tggaagttaa 1380 ggtgtagtta tgttttttgt agcctgtaat ctgttctaca agaaatatgt tagtttataa 1440 ttttatcttt gctctgaaca aagttatgat tttttgaatg aacttgatcc actatttctg 1500 aaaaaactca aaaagttttg ccattctgct caacctgcct attggcacct tatattatct 1560 gttttgtgct agtccgagga agggacattt tttgccacca atatctaaga aaaagcgagg 1620 ggacacttcg ggtacttccc ttgtcagtta gtgcagtttg tacagtgcag ttcgtttatt 1680 cggttattgc agtgtttctt tctgttcata aaattttctg gagatttcag tttttggtat 1740 tttcctgaga tggaggttga aaaatagaag cccatgggct tcaattagag aaaatacggt 1800 atgttgaaat gccgatccga gattttgaaa atcgaaaaat ttcgatattc cgaaaatccg 1860 aaattttcaa aatcggaaaa ttccgaggtt ccgaaattcc gaaattttta aaatcggaat 1920 tttcgacatt ccgaaaaact tcgaaaaagt cattccgaac atccgaacat agaaacatat 1980 gtttcagcca aaaatgtgaa aaaattgaat tttaaaaaac ttgtgacaca aaagtatcac 2040 cagaagaaag gaaatatatt cttcttcaaa ggtattcagg gtattttttg ggatttttca 2100 tccttctgaa aatttatttt tggaattctg tgttttgctt ttattgttta gcttatcttc 2160 attgaaaatt ttgaatttca attttgattt tcaatttatt atttccaaag tagcatcaag 2220 ggtttgttac acattcaggg ttctttgttt ttaggtttcc gccggttgag ggtgctgagc 2280 ttatttctgt ttagaatctt caacatttta acccgttttt gccttagccc attttatgtc 2340 ggtgcttggc actaaagagt ttttttctga attgaaatta taaaattata cgataatata 2400 cttcaggaag aactgggtat caaaaaccaa aaaaaaaccc gaagaatact attcaagtgc 2460 tgaaaatact tttgagggct gggtgtttta ggggtaatat aagctcgggg ggtaaatctt 2520 catattttcc tttttccttt ggaggggaat aaatttgaat ccactctata ttgcttccga 2580 cgaacgacag cagatctacg tttctttttt ttttgaaatg tcacgtaaaa aatattttgg 2640 ctatgaaaat cagctaattt ttcaaaaatc ctacatagtc acgtgatttg ataaaaaacc 2700 cccatgcccc ctttcgtaga tttacgggcg tct 2733 // ID HAT6_CB repbase; DNA; CBR; 1336 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000330; DNA; HAT6_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1336 RA Pavlicek A. and Jurka J.; RT "HAT6_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(8), 205-205 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC HAT6_CB contains 18bp-long imperfect TIRs and is flanked by 8bp CC target duplications. The central part bears distant similarity to CC hAT transposases (HAT2_CI). XX SQ Sequence 1336 BP; 438 A; 229 C; 236 G; 433 T; 0 other; tagtgtgctg tgtcgattgt tgacaatcga caaaaatcga cgaaaatcgt taaaatcggt 60 gtcgatttcg tcgactcgat caaaaatcga cattcaaaaa gtcgacagaa aatcgacttt 120 tcaaaagtcg atgaaagtga aaatcgacaa aagtcgattt ttgtcgattt tgaatcgact 180 caaaatcgac aagaatcgac gaaaaatcga cgaaaaaatc gacttttgtc gactttattg 240 tccgagagga ctacacggcc ggtgacctag aaactgcctg tggccggggt atttttcatg 300 aaaaacaggc atttttcatc gaattttcca ctgaaaaacc gtatttttct tgtttttttt 360 gggtgttttg tttttttttc tgtttcattt atgacattct tgcttattgc agatgaattc 420 gtcacaaaat caatctaaag cgtggcgata cttcgaaaaa caaaataacg gacaaactgt 480 gacctgtaaa ctgtgcggaa ggagcataaa gttccattct tcgaccacaa cgatgcatca 540 gcacttaaac agtcaccacg agaaagaagt tgtagaaatg gaaagatcgg taagcagaaa 600 attatatatt tttcgttaaa ttcttaatct tagatagtac ataaagatca agagccacgg 660 catcaaataa ttggaaaaaa tcactttgga gtaagatatt aaagcttatt tttcctcaaa 720 atctgatttt tcttcagatc tacgaagaag aatacgtcga caacagaaga gtacgaatat 780 gatgacgaga atgatgactc agaaggcgta gaatattacg aatccagaga gcataacgat 840 gatacttttg gaaacgattt ggcccaaata atgaaacatt aattcctaat gctgaacttt 900 gttcttctgt ttcttctctt tttcaaaatt ttgtcgcttt gaattttctt ctattttcct 960 tgccatcttc tgaatactga ttctctattt tgtaccccgt tgaaattaag ttttacacta 1020 tttgtttttt tattcataaa aataaagttg ttactctaca caaaaaatga tttcttcaaa 1080 aaattagaaa aaaattttct cgaggtgaaa ttttactttg aagtccggaa aagtcgattt 1140 ttcgtcgact tttgtcgatt ttttgtcgat ttttctgtcg attttaagtc gacgcaaaat 1200 cgacaaaagt cgattcttgt cgactttcgt cgactgaaag tcgacaaaaa tcgacaacga 1260 aaagttcgat tttcatcgac aaatagcctt gtcgaattgt tgaatgtcga ctgtgtcgat 1320 tttcaaagtc gacaaa 1336 // ID HELITRON4_CB repbase; DNA; CBR; 1517 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000308; DNA; KW HELITRON class; HELITRON4_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 230-1286 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1517 RA Pavlicek A. and Jurka J.; RT "HELITRON4_CB - a family of nonautonomous HELITRON transposons."; RL Repbase Reports 4(10), 271-271 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC HELITRON4_CB is flanked by TC-CTGG termini and inserts between CC 5'T and 3'A.. Distantly related to HELITRON3_CB and HELITRON5_CB. CC Positions 815-1442 form a palindrome-like structure. XX SQ Sequence 1517 BP; 514 A; 260 C; 250 G; 493 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgagtgt gtgtgtccgt ttgttcccgt 60 atcaccttcc ctaacgaagt ccagaatgaa ccaaattttc ccaaattttc acagataacc 120 cgaaatagca gcgagatgat gcccgaatat ttaatctttc gaaattttgt gtctgacgtc 180 ttctggagac gttcttctat ttctacagtg caaattttta gaaaaatatt gaagaaatat 240 tcacgtcatt tccgtctaac cgcccaaatt tttttcttat ccacgctata tttgagagaa 300 aggatttttt ggaaatattc ttttagtatg ggttttaaag atttgaaagg aagaaaaaat 360 tctgaaacag tggaaaagaa agaaaataaa aggaaaaaaa agaaagaaac agaatgcgag 420 ggaaaataac agcgcccttt ctgatcactc gatttttcag aattcagaat aatttttaaa 480 atttccgaac ttaatttcat atctttcaaa tttcggaata tataaatttc tgagatctta 540 ttcaccgaat atgccaaaaa atttcaaagt ttcagatttt ccaacatttc aggttttcaa 600 ttttcggaat gtctaaattt tcgaaattta gagttttcga attctgaaat ctacatttcc 660 gattttccga agttccaaaa acttttcgac gagactgtgt ttcgaaaagt tgaatttctg 720 aatttctaat ttttcaggtt ctcaaattct cgattctaaa ctttttcgaa attctataaa 780 ttttgcgaac agggccgttt caggccagcc cggcatttag taagtatgca aaaatctgaa 840 ttttccgatt ccttaaaatc tgatatacca aaatttgggt atttgagaca tacagattga 900 aacacttttc tagatttcaa aattaatgtt ttcctacatc tgatttttta aaatttacta 960 atctctgaac ttgcgagtgt cttacttttt caatttccgg attttcttac ttccgacttt 1020 ccgaattcta ggaattctaa ataaccaaaa tatcgaattt cgaaatttcc taacagacca 1080 tgaaaaaata gtccctggaa aaatgacaaa acctgtctat aagacaacgg gtactgtaag 1140 cgggagctag gaggctcagc ccggaggggc gcaaaccgac tgtttttcaa aattcgaaaa 1200 tttcgaaatt cagaattttc ggagaccaga aagtttagta aacctgacat ttagttatcc 1260 aaaatttgaa acttcaggaa accgggagtt cacatactcc ggatttcaga acataaaaaa 1320 tcttttttca atagtttgga aattttgaaa atttgggaaa tcaaatattc ctcgaagaaa 1380 attgatagta tgcaaaactt tcacaaattt tggtgaattc ggaaactcga aaatttttaa 1440 attagaaatt aaattgtaag atacagaaag cggaagccag gaggttgagc ccccgacagg 1500 gggcgtaaac cgactgg 1517 // ID MERLIN4_CB repbase; DNA; CBR; 718 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Cb000192; DNA; KW MERLIN4_CB; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-718 RA Pavlicek A. and Jurka J.; RT "MERLIN4_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(4), 118-118 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~92% identical to the consensus. CC Distantly similar to MERLIN2_CB and Merlin1_CB. MERLIN4_CB CC contains CC ~193bp-long TIRs and is flanked by 8bp target duplications. XX SQ Sequence 718 BP; 195 A; 167 C; 164 G; 192 T; 0 other; ggctctttcc gggaagaacg gtcccaaaac gggaccgccg gtcccatcat cggaccaccg 60 gtcccaagaa ttgcgacaac ggtcccattg ttccgataac ggtcccaatg ttccgagaac 120 ggtcccaacg ttccgacaac ggtcccaagg gtacgacaac ggtcccaacc aggcttaatc 180 tggaaaccct attcccgaaa tacagaaaaa aaacggaatg gtcttttaaa aatccagtgg 240 aaaatttaac attttactta tacttgggaa tttcagtact ttttgacagg aatttttcac 300 aaaatattac gtttttttgt attgtaggct taggccaaaa cgcctttttc cggcactgat 360 gtgaacaagg cgtttcagcc taagcctata attataaacc aaatacactc tgaaaaaatt 420 ccagtaaaaa agtgctggaa ttctcaatta tcagcaaaat gttcgttttt gttgctgaaa 480 tgtgtttctt agttgaaaca aaaattacaa tttccgatgt ttccaatagg gtttccagat 540 taagcctggt tgggaccgtt gtcgtaccct tgggaccgtt gtcggaacgt tgggaccgtt 600 ctcgggacat tgggaccgtt gtcggaacaa tgggaccgtt gtcgcaattc gttgggaccg 660 gcggtccgat gatgggaccg acggtcccgc tttgggaccg ttcttcccgg aaagagcc 718 // ID MARINER47_CB repbase; DNA; CBR; 1084 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000023; Cb000247; DNA; MARINER47_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 178-575 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1084 RA Pavlicek A. and Jurka J.; RT "MARINER47_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 296-296 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC MARINER47_CB contains 45bp-long imperfect direct repeats and is CC flanked by 3bp target duplications TNA. C|TNA|G insertion motive. CC Related to MARINER45_CB and MARINER46_CB. XX SQ Sequence 1084 BP; 331 A; 196 C; 193 G; 364 T; 0 other; caagggaagt gttttcagag gggcgttgag aattttctaa aaatttcagt actgatagtt 60 tgagatatcc gcaacacgat gacgaaaaaa tctaggtcat agtatcatca acaagctgaa 120 aatcttcgtc tgaaaatttt tggtcgattt cgccctctcc ctcactccac tacgcccctc 180 tctcctatac gcactccgcg ccagaggaaa atatcggttg tgtggtgttg tggtaagagg 240 gagactcatt aggagtgact atggtggttc gaaccccact gtggtaaatc tttttttttg 300 tgtttttttc gagacgaatt ttcgatatcc attttggtcc cctgaataac aaattatact 360 tatttcatga attcccgacg ttttcaaagt gaaaaagaag gcgtttgaaa ttttgaagaa 420 attttgaaat attgtttttt tcgacttgtc ctatcgccca aaagcaaaac tttcgactct 480 cggaattgct ccgtcttgct cttttttgag tggaacacca ccaaatctat cacccaaatg 540 atctttacat atttctgtgt attccgtgcg attttgagca atatttgaga agttacagtt 600 tttcaaattt cttgcaatta tcagattttg ggaattatca gggctcacag acgaaatcga 660 gctgccaaat tctgtgaaaa tgatgtttct atcatttctg aatgtttgaa agactttttt 720 gcactttcaa aaaaatttct caaaaaatca cttttaaagt gtggggtacc ccatgatgat 780 ttttttcaaa aaaaaaatcg aaaaaaattt ttttttgaaa ttgtacaaaa aatatttcag 840 atgatagaga aatgatcaaa aaagagtttc ccgcttgaaa aaatcctgga aaaagagttt 900 taaagctcga aaaatgcacg tttttggtca aaatttagta ctgaaaacac tttgagagcc 960 catatttttg ttcctattag ggttatgacc gagatattgc tgaaatcgta ttcagcatgt 1020 tcgaaagtac ctttgtacaa attttgagct aattctcaac gcccctctga aaacacttcc 1080 cttg 1084 // ID DNA8-1_CB repbase; DNA; CBR; 1060 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.03, Created) DT 12-APR-2006 (Rel. 11.03, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000601; KW DNA8-1_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 700-1060 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1060 RA Pavlicek A. and Jurka J.; RT "DNA8-1_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(3), 116-116 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. DNA8-1_CB contains 10bp-long TIRs and is flanked by CC 8bp target duplications. Similar to DNA8-2_CB and DNA8-3_CB. At CC least three subfamilies of DNA8-1_CB exist in the genome. XX SQ Sequence 1060 BP; 350 A; 202 C; 173 G; 334 T; 1 other; gggttccgaa aaaagctcag tcatgagctt aagctcacgt gggctcatca tgaagcaggc 60 tcatatgagc ctttttcgac tccacgtcaa agctcataca ggctcatttg acgaaaatat 120 tgattttgaa aaaagctcat cgaggctcat ttgacgtaat tattgatttt gaaaaaagct 180 catcgaggct catttttaaa aaagctcacg ttgactcttt ttcaaaaaaa aggctcacgg 240 aagcatagtt caaaaaatac actagaaaag tgttcacgtg gcaaaaaata ataataaaaa 300 ccaacacttc agccaaatat tcaaataatc aagtgccctg atgggcagaa acaatggtgg 360 cctaaaaaat aaatggtggc ctagaaaaat tatcttgcaa aaattaggtc atcatgtgaa 420 aataacctag aaatcatatc aggtcaagcc atttaacatt tcaagtgagt tttctaggcc 480 atcaagtttt atggcccaga aatggtctgg catgcaccta atatgttttc tagtcnattt 540 tgacacagtg gcctaacttt tccatgttaa gttctttagg ccaccatttt tatggaccat 600 aactcgtcta acattcacct gatagggttt ctagcttatt tggacacaat ggcctaactt 660 ctacattttg agttttctag gccaacaact tttatggcct atcaatggtc tggcattcac 720 ctcatttgtt ttctcggcaa ccgtattaaa attgctttga aaactctatc aaaaagttag 780 gccaccatat taaaacggtg attatttcat gatatcagtg actttttaaa aaattatttt 840 cctttcatta ttgatgatga gccataatga gctttttaat aaaaatcaca gaatgagcct 900 catgagcctt tatgagcttt ttgataaaac taaaaaagag tcacgtgagc ttttttgttt 960 ttttcaaaaa gctcattcaa aatcaaatga gccttaatga gctatttgaa aagctcattt 1020 tcacgtaaaa gctcatcctt ctttttcaaa ttcggaaccc 1060 // ID piggyBac2_CB repbase; DNA; CBR; 413 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000187; DNA; KW palindromes; piggyBac superfamily; piggyBac2_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-413 RA Pavlicek A. and Jurka J.; RT "piggyBac2_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 92% identical to the consensus. CC piggyBac2_CB contains 170bp-long TIRs and is flanked by TTAA CC target duplications. XX SQ Sequence 413 BP; 125 A; 80 C; 77 G; 131 T; 0 other; agggggcgtc cactaattcc aaaatttttg agatttttat atcaatcgat ccagaatttt 60 gggtcgggaa gaaaactctc ttggaggata gtccgaaaat cactcgtttt taagatatat 120 gtcaaaaaca ggtcaaaaaa aaatcaacgt agagggtgca gattaggaag aataataggg 180 aaaataattc acgtttttat tcatttcttt gcgtgcaccc tcaaggattc tgcctcttgt 240 cgagctccct aatctgcacc ctctacgttg attttttttg acctgttttt gacatatatc 300 ttaagaacga gtgattttcg gactatcctc caagagagtt ttcttcccga cccaaaattc 360 tggatcgatt gatataaaaa tctcaaaaat tttggaatta gcggacgccc cct 413 // ID HELITRON11_CB repbase; DNA; CBR; 1003 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000512; DNA; KW HELITRON class; HELITRON11_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-200 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1003 RA Pavlicek A. and Jurka J.; RT "HELITRON11_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 264-264 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC HELITRON11_CB is flanked by TC-CTGG termini and contains a CC palindrome-like sequence in positions ~712-900. Related to CC HELITRON12_CB and HELITRON9_CB. XX SQ Sequence 1003 BP; 300 A; 167 C; 218 G; 318 T; 0 other; tcattactaa taacattcac caaattccgt atgtaaggat gtatgtcgcg tgacggttca 60 cccattcaaa gttaaccgat tgagctgaaa cctggacaga cgaatcggaa atttttatta 120 gttatggccc gaccctttct attttcgaaa tttcgatttt gaaatcttct ggagacgttc 180 ctttgtttca ccacagtaaa gcgtggtggg cagagggtgc gagagaggag ggagaggggg 240 agttggtgag gaaaaccaac acacacgtgt acgccatgtt tttcaccttt cttgtgttga 300 cccgtggtgt agtggctaag gcactacgct tttgtcctcg ctacgcgggt tcgagtccgg 360 caggcggcaa cttctttttt tttgattttt taaaaaattt cagaagtgaa agagaatatg 420 tgtaatattt tctcttatcg gttcgagtgg tattgcggga aggagttttc aaaatttccc 480 gatttgatat caagtaggaa ggaaaattta gttctatttt gaagcttttt agtggttttt 540 tttaatgaag agccaagtta gctggataca aagctggaag ctctgaaacc acaacaaaaa 600 tgtccaaaga cctcaaaata tgataaaata tcggaaattc agaaaatcta gattcggagg 660 ttactcaaat taatattggg aatttcaaaa ttcttattat ctacatttaa cttttagaat 720 ttcagagttt tcgaattgct gagattttgg atcaaaattt tcgagtttgg actttttcaa 780 tttttcaact cccgaatttt ctgaattcac aaatttcggg caattagaat tttggaaatt 840 cggaaattag caaattcaaa cctgataatt cgaaaattcg ggattccaga aattcaaaaa 900 acacgaaaat ttgtatttga aacacttttt tcaaaatcaa cgttttggtg gagggcgacc 960 ggaggccagg aggtttagcc ccgaaggggc gtaaaccgac tgg 1003 // ID MERLIN7_CB repbase; DNA; CBR; 934 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Nonautonomous; KW Cb000593; MERLIN7_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-934 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-934 RA Pavlicek A. and Jurka J.; RT "MERLIN7_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(1), 42-42 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 93% identical to the consensus. MERLIN7_CB CC has a palindromic structure and is flanked by 8bp target CC duplications. Similar MERLIN3_CB. XX SQ Sequence 934 BP; 301 A; 175 C; 156 G; 302 T; 0 other; ggcactcttc tagaatcacg gaacgaaaaa aaaatcaaaa atcacggaac gaaaaataaa 60 atcacggaac gaaaattttg ggtaatccaa aaaattgcta tcttctttac tttgacaagt 120 agtatccgta atactaactt tggcatcaat tttactttgt ccaataccca aaagtatact 180 aaaaaagggt ttatcaattt cttaagatac gctagttaac aggttacata ggacctgtag 240 aacatctgaa aattcagttt aaagctacat caagcagtta ttgagcttgc tgacatttta 300 gggtgttcca gataaaagaa gcatggcgtt tcagcctaag cctgtgattg aaaaaagctt 360 cctcaatcca aaaatatcat ccaatttttg aaaaatgaaa aatccgaggc aagaaatttc 420 atgccacgat ttctactcaa tttggcccaa gactattctt attccggacc aatattttgt 480 tccaagaaga ctaattttga attagaaaag atttcttcaa ttataggctt aggctgaacc 540 atcatgtttc cttcatgtgg gacacccaaa aaacgacggg aagtttgata actctgctcg 600 ttgcagcctc taatctaact ctcatatgtc ccatgatcct cagaacatct gggaaaggtc 660 ctatgtaacc tattaaccat gtacactatc aactagtgta ccttaaggac tcaatatacc 720 acatttcggg tgtcattttg gatactgagc aaaaaaaatg taatgtcaag gttagatttc 780 aggatagtac ttgaatgaag gtcctagcaa tttttggatt acccaaaatt ttcgttccgt 840 gattttattt ttcgttccgt gattttattt ttcgttccgt gatttttttt cgttccgtga 900 tttttttttt cgttccgtga ttctagaaga gtgc 934 // ID MARINER12_CB repbase; DNA; CBR; 1215 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000077; DNA; KW MARINER12_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1215 RA Pavlicek A. and Jurka J.; RT "MARINER12_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC MARINER12_CB contains 32bp-long TIRs and is flanked by TA CC target duplications. The internal part has similarity to CC to mariner transposases (MARINER3_CE), but no elements CC contains functional ORF (probably nonautonomous). XX SQ Sequence 1215 BP; 359 A; 265 C; 246 G; 345 T; 0 other; ttaggttgag cgaaaagtct ttgtaatttt ttttggaccg tcatatctca gcgttgattt 60 aactttttat tattctgttt tttctatatt gtagtactag ttgtgcatgc ttaaaagatt 120 tgttaaagtt accgacggcg ttcataaaga ccgagaattt gctcagagac caccatgctc 180 tcaggggtgc ttttttgttc gagtttctcc aaggtcacaa atgcagcgta gcttgtcgta 240 aattgtgtac agtgttaggc cagaactata tgtcctacac tacaataaag ttttggttca 300 aaagattctc cgaagagaac tacgatctcg aaggtctggc ctaccacgtg ttgatctcaa 360 cgaggatatc tctagagcgc tagaagaaga accaagagta acgtcacgcg agcttgcagc 420 aagtctcaac catcctcaaa gaaccataat tgatcatctt cacgaatctg gaagggtgcc 480 aaagtttggt caactcgccc ctcccctttt gacggattca ctaaaaccat tgcgttgcga 540 cttggcacat tctcggctta ctatgaaacg tagcaccaat tgggttgaga atattatcac 600 tggggacgag tagaaaaaga cgatgggtcc cggccgagga aaccgccaaa acgggcatca 660 aaggagaact tcacgagaaa aagttatatt ttccatttgg tgggacagtg aaggcgttat 720 cttcagaaga cttcttctag acggcgtcac tatcaatgcg gacctcaaca gcactcaaat 780 ggaaaaagca ttccaggctt atcgattaaa ttgcccgaaa aattccagct tgttgatgat 840 tcatgacaac gcaagaccac ccactacttt gaagacccgt cagaagctcc agatgctcgg 900 agtcaaggtc ttctgtcatc caccgtattc accagacctg gccctaactg aatatcaact 960 aatccgttcc ttgaaaaatc tccttgttag gcaaaagttc catgatagaa aggatgtaaa 1020 aaagtggttg gatgacgttt tcgcttccca gtctaccgag ttctacgcta atggaatcgc 1080 tcaacttcca tcgcgttggc aagtagtcat ttacactatt ggtgaatata tcacacattg 1140 aattccgttt tctttgaata aaattttgtt tcgaaaaaaa ttcaaaaaat tacaaagact 1200 tttcgctcaa cctaa 1215 // ID tRNAGlyGGC_CB repbase; DNA; CBR; 80 BP. XX AC . XX DT 12-JAN-2005 (Rel. 14.08, Created) DT 02-SEP-2009 (Rel. 14.08, Last updated, Version 1) XX DE tRNA from Caenorhabditis briggsae. XX KW tRNA; Pseudogene; TRNAGlyGGC_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-80 RA Smit A.F.; RT "tRNAGlyGGC_CB - tRNA from Caenorhabditis briggsae."; RL Direct Submission to Repbase Update (02-SEP-2009). XX DR [1] (Consensus) XX SQ Sequence 80 BP; 10 A; 22 C; 26 G; 22 T; 0 other; gcatcggtgg ttcagtggta gaatgctcgc ctgccacgcg ggcggcccgg gttcgattcc 60 cggtcgatgc aattcttttt 80 // ID SAT2_CB repbase; DNA; CBR; 322 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae satellite repeat. XX KW SAT; Satellite; Simple Repeat; Cb000555; SAT2_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-322 RA Pavlicek A. and Jurka J.; RT "SAT2_CB - satellite repeat."; RL Repbase Reports 4(12), 333-333 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. SAT2_CB is composed of 322bp-long repeated CC units. XX SQ Sequence 322 BP; 109 A; 57 C; 41 G; 115 T; 0 other; cggtttcagg cttttgtcca taacttcgta tcgagaagag atctcgatct gatatttgaa 60 tccggtacct aaaattgaat gtcaaacgtt ttcttaacaa aaaatctcaa aaaattgaca 120 aacatttttt tttgatcgaa aaaaagctaa gtcttacata aggcattttt ttcgaaatcc 180 caaaaaaaac tttttttttg attttttgtc ttagaaacgt tccacattca atttcaagtt 240 acgtcccaaa atttcaggcc caaatctctt atttgaacaa agttattaag gatttttcta 300 agcctgtact taagccaaaa tt 322 // ID DNA6-1_CB repbase; DNA; CBR; 218 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000076; KW DNA; DNA6-1_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-218 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-218 RA Pavlicek A. and Jurka J.; RT "DNA6-1_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC DNA6-1_CB contains 22bp-long TIRs and is flanked by 6bp TSDs. XX SQ Sequence 218 BP; 88 A; 35 C; 38 G; 57 T; 0 other; cacggtgagt ttttcactac cgaaatgcga aacagtctgc gacgttttaa agtacaacgg 60 acaaaaaaaa atctgattca tttttttact atatattctt cataaaattt actaaaaatt 120 tatggaacag aaaaaaaaag ttatggacta gaattcgaga aaaaaaaatt ccaaagttga 180 aagcagcgcg ctgcagcggt agtgaaaaac tcaccgtg 218 // ID DNA2-14_CB repbase; DNA; CBR; 1029 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000139; KW DNA; DNA2-14_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1029 RA Pavlicek A. and Jurka J.; RT "DNA2-14_CB - a family of DNA transposons."; RL Repbase Reports 6(4), 166-166 (2006). XX DR [1] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC DNA2-14_CB contains 15bp TIRs and is flanked by 2bp target CC duplications. XX SQ Sequence 1029 BP; 307 A; 206 C; 210 G; 306 T; 0 other; cacaggtcct gggcgatgat gcgcataaag gacccgatcc atatgcgatc ctctagaagt 60 ccgtttgaca catatcgcga acaacgagct gcgatgagtc tcatatgtgt gcgatgcggg 120 agaggctgaa tcgagtgttc cgaatgcgcg cgtatcctag atggattctg ggtgggtggg 180 cgatgtgtgc gatatgggtc tgatacggta ggccgactac aacactccga aatcccggat 240 gcgcccattg tttaccgtaa atccacaccg gcaactttgt caatttttcg tcaattcgag 300 cctacatttc tggtttttcg attattcctt cgatgttttt tgtgaaaaag agttatggca 360 gaataaaaaa tcgctgaatt cttgcagaaa catgtctttc actcgttaat tgctatgttt 420 ttcgccaaaa taggtgatat tgagattttt tgatttcact ttgtaattat tgtaaaaatc 480 gtattttcag gtggagtaaa aggtaagttg gtaagtatac aataattaca aagtttaaat 540 tataaaaatt ttcaattttt catgcaattt caaaaaaagt gaaagtgaga catatttttt 600 gaacaaatga aaaaaaaaac aatttttagc gaattttttc ccattttctt ctgtttttga 660 ttgcatatca aatttaaatg gaaactgcca taagtctttt tcaaaaccaa aacattgagt 720 ttcgaaaaat cagtaatatg tcgttcaaaa tataaaagaa tatggaataa taaaggaaaa 780 gtacgaaatc ggaagacctg aacaaaatca catcacaata gaacttaact gatacttcta 840 ggaaccccca accaacgttt tagttcattt catcgagtgc cagcaagcca ggcgaggaga 900 tgctttgcgg cggcggtgtg ccccatatgc cccgtatatg ccccataccg gcgtcctttc 960 cctgtaccca attcatcggc gcgtcctccg tcgcccatcc attatgcgta tgcgcgccca 1020 ggacctgtg 1029 // ID MARINER38_CB repbase; DNA; CBR; 1241 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000363; DNA; KW MARINER38_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1241 RA Pavlicek A. and Jurka J.; RT "MARINER38_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 89% identical to the consensus. CC MARINER38_CB contains 46bp-long TIRs. The consensus was CC reconstructed CC from 4 sequences. The central part bears similarity to mariner CC transposases. Distantly related to MARINER4_CE, MAR_CE, CC MARINER18_CB. XX SQ Sequence 1241 BP; 326 A; 268 C; 299 G; 345 T; 3 other; tattagggtg gggagaaagt ttttttccga aatttttcaa aattttgttt tctaattatc 60 tcattttctt tcacgatcca ctaacaatat attcaacant attgactaca gtgagccacc 120 tattgggaag ttactcgatt ccagtcttcc agaattcggg cgtgtgagag tgaaagaaga 180 cgctcactgc cattttgagt tggttcaatg ttttgaactg tttctctctg aggaactgct 240 tgagcgggcg gaacagatga taattcaaaa gcgcaatgtc tggcgagtat taaaaataaa 300 aaaccatagt cccgcccagc ttctgcagtt ttgcctgggt gtctttagtc acacgcgggc 360 gagcaatatc atgtagaagg tgaacgatgg agcgtctcgg gcgtttctct cggagggcaa 420 tggcaaagga atccaactga tacctctagg tggaagctgt gatcgatgtt ccttgctgga 480 tcaactcgaa aaacagcaat cccttctaat ctcagaagca cgaagcaaac acatcttctc 540 atgaaatcct tttcggttgc acttggcggg tcgccgccgc gaggaatcca aattgcatga 600 tgggtgttat tattgcagag tatccagctc tcatntcctg ttaacaagtc ggccagaaac 660 tctttcctct gcggagtaag gaggatagac tcattcaagt ccgtttctga aatgaagaga 720 tcatgaggta cccgttgagc catcactctt cgganaccaa gcttgtggag atgattgttg 780 atgatgtggt agtcgcagtg gaacattgtc tacagttcgt gagtagtctc atcgggcttc 840 tccctcacgg cttcaagcag cagctcgtca aactcagcag gttttggata gtgtgaggat 900 tgtcttcgag gctcgtgtct cctgactcaa aagaagcaaa ccgattgcgg acggtgcaat 960 cggtgacggt cctctctccg aacacttggc atattttctt agcggtctcc gtcgcacagg 1020 tgtcgtgaga tcacttgtag aagatgagga gccgaacttg aggtctcgag agatcgctca 1080 tgattgtttt accagtggac acaagcgcct tatataggca tgagggaaaa gccttcagga 1140 cgttctaccc taatatacac taggaaagtt ctagaaactc ggggactttc cgtgggaaaa 1200 atttgaaaaa tttcggaaaa aactttctcc ccatcctaat a 1241 // ID MUDR2_CB repbase; DNA; CBR; 1466 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000216; DNA; KW MUDR superfamily; MUDR2_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1466 RA Pavlicek A. and Jurka J.; RT "MUDR2_CB - a family of nonautonomous MUDR-like transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC Contains 452bp-long TIRs and is flanked by 9bp target CC duplications. CC Partially similar to MUDR1_CB and MUDR3_CB. Variable internal CC part. XX SQ Sequence 1466 BP; 453 A; 284 C; 288 G; 441 T; 0 other; ggcccatact cccggggtac atcagaatgg ggtacatcgt gctcatgggg tacaaagtct 60 cagggggtac atagtctcat ggggtacatt ttaggtataa tctcatgggg tacatttttc 120 gctttctcat ggggtacatc tctgaaatac tcagggggta catcgcattg tctcagaggg 180 tacatcgcat tgaatctcat gtggtaaaca tcaagtcgga ttctacagtt tcagcgctca 240 tagctgcctg atttttccaa cattcgttac atattatgag tggttttttt tgttttccat 300 gtagttattc aagaatgtaa tttcgctttt gatgtggttt ggaacagaga taactgtcca 360 acattatttc ttctcattca taattcagaa acatttggct gattgaagaa aaattgccta 420 ttgcaagata ttcggagatt tcggcaaatt cttactactt tttttttcaa tcaccacaga 480 gtctcccata ctaccaaaag aaacaaggct ttcggcctaa tcctatagtt ggcaaaaaat 540 ttggtacaag ggggctgatg ttcaaaaatg gggtgaaaat caaacagcat tccagagcaa 600 agcaaaagga aattggtagt gaggaaattc tttcgaaaac caatttccac aattacaaaa 660 tcaaaaagaa caaaatgatt ttctgcgtag tttttgaaaa ttcagaaata agatctgaag 720 tgaggttttg aggcccagtt ctcagaaagt tccgaaattc tcagattccg aattctattt 780 taagctctgg aaactccttc tacccccgat accccttagt tttcacccaa atttttgttt 840 tgtacccccg atcacttttg tacccctaaa tcagttgtac aattttttgc caactatagg 900 attaggccga aagccttgtt tcttttggta gtatgtctgt ggtaagaagt agtataagta 960 aaagagactt ggtagtggta gtaaaagaga ctcggtagta tatggttgta taagagaatt 1020 tgccgaaatc tccgaatatc ttgcaatagg caatttttct tcaatcagcc aaatgtttct 1080 gaattatgaa tgagaagaaa taatgttgga cagttatctc tgttccaaac cacatcaaaa 1140 gcgaaattac attcttgaat aactacatgg aaaacaaaaa aaaccactca taatatgtaa 1200 cgaatgttgg aaaaatcagg cagctatgag cgctgaaact gtagaatccg acttgatgtt 1260 taccacatga gattcaatgc gatgtaccct ctgagacaat gcgatgtacc ccctgagtat 1320 ttcagagatg taccccatga gaaagcgaaa aatgtacccc atgagattat acctaaaatg 1380 taccccatga gactatgtac cccctgagac tttgtacccc atgagcacga tgtaccccat 1440 tctgatgtac cccgggagta tgggcc 1466 // ID DNA3-3_CB repbase; DNA; CBR; 1153 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000209; KW DNA; DNA3-3_CB; Interspersed repeat; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1153 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1153 RA Pavlicek A. and Jurka J.; RT "DNA3-3_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 88% identical to the consensus. DNA3-3_CB CC has a palindromic structure and is flanked by 3bp target CC duplication. XX SQ Sequence 1153 BP; 379 A; 195 C; 188 G; 391 T; 0 other; cacgggaagt acccgaagtg tcatctcgct ttttcttaga tattggtggc aaaaaatatc 60 gtcccttccc tggactagca caaaacggat aatataaggt gcccataggc aggttgagca 120 gaatggcaaa actttttgtg atttttccga aaaagtgggt caagtccatt caaaaaatca 180 taactttgta cagattgaag ataaaattat aaactaaact gcattttgta gaacggatta 240 caggctacaa aaaacttaat tacaccttta ttctatctct gcaaagaatt ttactatgat 300 aggaaatgtc cgaatggtcc gattgtgtga aatcaaaaaa tgtcgatttt gcgaaaaaac 360 acctttggga gaccatgtct atccgattcc ttttatgtca taatgcacaa ctataatttc 420 aaatatatag ctcaccgttc atttaagaga gatttttgaa aaaataaact ttttaaagtc 480 aattccatgt acccctatac atgctaattt ttaacatgtg aaattttttt ttcgaaaatt 540 ttgacttctt gatcacgatt tgatcatttt ctgtcaaaaa aaaactaaac caactgaatc 600 tttcattctc agagctttta tgttgtatat ggaaaaatga gttttaaaaa ataccatgta 660 taggggtaca tggaattgac tttaaaaata ttattttttc aaaaatctct cttaaatgaa 720 cggtgagcta tatatttgag actatagttg tgcattatga catgaaagga atcggataga 780 catggtctcc caaaggtgtt ttttcgaaaa tcgacatttt ttgatttcat acgatcggac 840 cattcggaca tttcccatcc tagtaaattt ctttgcaaag atagaataaa ggtgtaatta 900 agttttttgt agcctgtaat ccgttctaca aaatacagtt tagtttataa ttttatcttc 960 aatctgtaca aagttatgat tttttgaatg gacttgatcc actttttctg aaaaatcaca 1020 aaaagttttg ccattctgct caacctgcct atgggcacct tatattatcc gttttgtgct 1080 agtccagcga agggacattt tttgccacca atatctaaga aaaagcgaga ggacacttcg 1140 ggtacttccc ttg 1153 // ID MARINER65_CB repbase; DNA; CBR; 971 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW Cb000072; MARINER65_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 98-971 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-971 RA Pavlicek A. and Jurka J.; RT "MARINER65_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 6(1), 36-36 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 90% identical to the consensus. CC MARINER65_CB is flanked by 2bp direct repeats (TA) and contains CC ~450bp-long terminal palindromes. XX SQ Sequence 971 BP; 333 A; 150 C; 149 G; 339 T; 0 other; acagtggcga gaagtggtga ggagaatttt ttcgaacatt cataactttg ttcaaaattg 60 ctcaattgac ttgaaatttt gcatgagaat agctgtaaaa tccaaaaaca taaaaatcgg 120 ttttttgaaa atttctcatt ttcagaattt tcagagcagt ttcagatgta acagtggtcc 180 gagaatccaa aaaaaaaact ttttttcaga attttttctg gctttgattt tagatgtcaa 240 atgattctca gtgtccaaat atgcaccaaa aaagttttga agaattttgg aagtcgggct 300 ctcgagttat gatgctcaga gcacaaaagg tatgtgtcgg catttttgcc ataactcagc 360 tgaaaatgta tttttgatgc tcaaaatttc acaaatgatg tgttttgagt tgtttatcag 420 ttttatgtca aaagtttttc aattgtagaa aatttttttt ttttctcatt tttagatttt 480 agaaattttc cctagaggtg aaaaaaatga aaaaaatttt tttctacaat tgaaaaactt 540 ttaacataaa actgataaac aactcaaaac acatcatttg tgaaattttg agcatcaaaa 600 atacattttc agctgagtta tggcaaaaat gccgacacat accttttgtg ctctgagcat 660 cataactcga gagcccgact tccaaaattc ttcaaaactt ttttggtgca tatttggaca 720 ctgaaaatca tttgacatct aaaatcaaag ccagaaaaaa ttctgaaaaa aaattttttt 780 tttggattct cggaccactg ttacatctga aactgctctg aaaattctga aaatgagaaa 840 ttttcaaaaa accgattttt atgtttttgg attttacagc tattctcatg caaaatttca 900 agtcaattga gcaattttga acaaagttat gaatgttcga aaaaattctc ctcaccactt 960 ctcgccactg t 971 // ID GYPSY3-LTR_CB repbase; DNA; CBR; 472 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 4bp TSDs; KW Cb000359; GYPSY3-I_CB; GYPSY3-LTR_CB; Gypsy clade; LTR; KW mag lineage. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-472 RA Pavlicek A. and Jurka J.; RT "GYPSY3_CB - a family of LTR retrotransposons."; RL Repbase Reports 4(9), 230-230 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC One internal sequence listed as GYPSY3-I_CB contains fragments CC of ORFs. XX SQ Sequence 472 BP; 178 A; 95 C; 105 G; 94 T; 0 other; agtaatgtaa ctgaaagaac ttccagaaac actaactgct aaaagacact attgaaaaca 60 acgagatgca gagagagtga gagacacaga caaacgctat gcactcacag aacctctatg 120 cactcaaaga gacctttgta acctgaaaaa ctagaagaca ctaaaacaca gaattcctat 180 aaaacactat ttattgaatc aacaataaat caacctatta aaggtgagtt aaaacaaatg 240 gaggcgtcac cagtgtgaac gcactcccaa gcaagaactg aaggggaaac gatgagagag 300 accacgaggg gagatgccca gagaaaacag agaagtgtct gttggcgcgc actttaaatt 360 cgcgcgggtt actgtgaccc actttcgttt gcatgtattt atcgggggag atttctctcc 420 tgtagacttg gaaagagggt gaagaagata aaaaccggta acctaccgga ca 472 // ID DNA8-5_CB repbase; DNA; CBR; 545 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000054; KW DNA; DNA8-5_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 222-545 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-545 RA Pavlicek A. and Jurka J.; RT "DNA8-5_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(4), 170-170 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 91% identical to the consensus. CC DNA8-5_CB contains 10bp-long TIRs and is flanked by 8bp-long CC target duplications. XX SQ Sequence 545 BP; 226 A; 78 C; 79 G; 162 T; 0 other; cagggatgtg cgtaaaattt ttattttacg aatttcgtaa aacgtaaaat tttacggaat 60 tacaagctcg taaaatcgta aaattcgtaa aatccgtaaa aaaacactga atcttcaatt 120 gaaatggaaa aaaaactgca gttttattat taagcaattg gcaaatggtc tgcaaatgtt 180 gaaaatcgta gaaccgaatg cttttatggg gtttcaacaa ttttctgtaa ttttttttcc 240 ttaaaaaatg ctaaattgtg aaaaaaaagc attcaaaatt ggaaacaaaa tatattttga 300 aaatgaagca aattcatgct ttaaaatgag atgttgagca taaaatcaac tcaaaactag 360 atcaagaaca tgaaaatgaa ccggaatact gtcaattctg aacaaaaatg gtggaaaaaa 420 cactcatcca gtttttacga attttacgga ttaaatttta cgacactcgt aaaattttac 480 gagtaccaaa aaaccttaaa atccgtaaaa ttcgtaaaat tcgtaaacgt aaaatcacat 540 ccctg 545 // ID MARINER18_CB repbase; DNA; CBR; 1261 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000173; DNA; KW MARINER18_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1261 RA Pavlicek A. and Jurka J.; RT "MARINER18_CB - an active family of young autonomous RT mariner/Tc1-like transposons."; RL Repbase Reports 4(4), 114-114 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >98% identical to the consensus. CC MARINER18_CB encodes a 339bp-long transposase, contains 27bp-long CC imperfect TIRs and is flanked by TA target duplications. CC Distantly similar to HSMAR1 and MARINER2_CE. CC MARINER18_CB_ORF: 170-1187 (339 aa) CC MSDQKFRLRAFLWHQFKEGKSAAEAHRSLSPVFGEEAISESQCRRWFQRFRSGDERLEDESRPGRPEQVD CC NDALRAAIEVDPCQTTLSLSEQFDCDFSTISRHLHAIGKTNRCGKWVPHELSDSNKERRVEVANILMRRS CC KNRGFFDSILTSDEKWIQWDNNGRKKQWLSPGETPKPTPKPDIHGKKVMICVWWNTRGLVHFELLRPGQT CC VNADLYKDQLDRVDQALKRQGVDTSTTLLLHDNARPHTAKIIQQKTQELGWEVLPHPPYSPDLAPSDYHL CC FRSMQHHLAEKKFESGEEVQIWVADYFESQPEEFFKKGIAELRTRWQQVVNNNGEYLID. XX SQ Sequence 1261 BP; 361 A; 273 C; 300 G; 327 T; 0 other; ttaggggttt gcaaaagtaa tgcgcgtcaa gtttggtgtt ttgtatctca cccaaaacaa 60 acggtttgtg ttcaattttt tttgttttaa aaagcgcgtt cttgggcttc attttgttat 120 attatattgc tgtttcaatt tgatttctat gaaaaaaaca ttctagaaga tgtccgacca 180 aaaatttcgc cttcgagcat ttttgtggca ccaatttaag gaaggaaaat cggctgccga 240 agctcaccgc tcactttctc ctgtattcgg tgaagaagct atatccgaaa gtcagtgtcg 300 ccgctggttt cagcgcttca ggagcggaga tgaaagattg gaagatgaat cgcgccctgg 360 tcgtccagag caggtggaca acgatgcctt gagagcagca attgaagtgg atccttgcca 420 aactactctc agtctctcgg agcagttcga ctgcgatttt tccacaattt ccagacattt 480 gcatgcaatc ggaaagacaa acagatgtgg aaaatgggtc cctcatgagc tttccgattc 540 gaacaaggaa agacgtgttg aagttgccaa tattctgatg cgccgctcca aaaatcgtgg 600 tttcttcgat tcgattttga catcggatga gaaatggatt cagtgggaca ataatgggag 660 aaaaaaacag tggctgagtc ctggcgagac cccgaaaccg actccaaaac cggacatcca 720 cggaaagaag gtgatgatat gtgtctggtg gaacacacga ggtctcgtgc attttgaact 780 tctgagacct ggtcaaacgg tgaatgcgga cctttacaaa gatcagctgg accgtgtgga 840 ccaagctctc aaacgccaag gcgtggacac ttcgacaaca ctcttgctcc atgacaacgc 900 tcgaccacac actgcaaaaa tcattcagca gaaaactcag gagctgggct gggaagtgct 960 gcctcatccg ccatatagtc ccgatttggc accatcggac tatcacctat tccgatccat 1020 gcaacatcat ctggccgaga aaaaattcga aagcggtgaa gaagtgcaaa tttgggtggc 1080 ggactatttc gagtcacagc cagaggagtt cttcaagaaa ggcatcgctg aattgcgcac 1140 acgttggcag caagtagtga acaataatgg agaatatctt attgattgat gatctcttgt 1200 tttggtttta caataaaagg aagttgcatc aaaaacgcgc attacttttg caaacccctg 1260 a 1261 // ID MARINER5_CB repbase; DNA; CBR; 1269 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000018; DNA; KW MARINER5_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1269 RA Pavlicek A. and Jurka J.; RT "MARINER5_CB - a family of mariner/Tc1-like transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 92% identical to the consensus. CC MARINER5_CB contains 31bp-long TIRs and is flanked by TA target CC site CC duplication. Distantly similar to MARINER4_CB and MARINER3_CE. CC Probably nonautonomous, ORF corrupted. XX SQ Sequence 1269 BP; 380 A; 252 C; 260 G; 377 T; 0 other; ttaggttgtt cggaaagtcc tttccatttt tgatatgttg ttttcaaact tcgttttttt 60 gaagggggta aaagcgagga agttgtcgtt ttatcagtat gttggtgagg tctaatagtg 120 tctacacccc aacggagatc attctcctct tttcgtgtag tgagatatgc ccaccgtttt 180 cgcctctaat aatttccatt tttggactac cattttattt gtatttctat ctgacctcag 240 attagctgaa atcaatcgcc aattagtgga ggttaacaac gaagatgcac cctttcgaac 300 taacatcaca acctggattc atcaatttga aaaatgagaa ttctcgttgg acgaaaatcc 360 cccttcaaaa aagcaaacgg gcttagattt ggatgcatta aaaaccggga ttgaaaggga 420 cccgtctcaa actgtgcggg atatatcaag tacatcagtg gcaagccttt cgtcaaaaag 480 ccataaattg gaaactctcg gcaaagtaaa aaaagtggga agatatggat cacacctttt 540 ggctcaacgc aactttgttt cacgtgtggg cacctgtttg aatcttctca tcctgcgttg 600 cacacatgaa tgttggaatc aaatcattac tagtggtgat aaatgggtaa tgtatgatta 660 caataaacaa caatccaagt gggttgacaa aggcactcaa ccaccagacg tcccgaaacg 720 tgaaattcat gttaaaaatg ggatgttgtc ggtatggtgg tctaccaagg agtggagtat 780 tgggagctgc cagataatgg tgtcactttt atgaccgata cctattcttg tcaggtgaca 840 taactcagac tccatgtgga tctccattgg agagaaacac aaaggtttat tttcaaaatt 900 gaaattcgca acctcatgcg ggaaggaaaa cgcagaccga tctcgctgga tatggctaga 960 cgattctgtc ttatccacag tatagcccaa accttgtact ttctgactac cacctatcca 1020 gccatttcta acgtcatctt gattgaaaaa aattcacttc aaaacatgat atcaaaaatg 1080 ggttgacttg attttcaatt cgctgtgacc ggagttctgg aaggaaggca tccacaattt 1140 agtgggacgt tggcagatag tcattgataa caatggtcat taccttcaat ttatccgaca 1200 tcgttttgac cttttttaca ttgaatgtat ctgacgctaa aaatggaaag gactttccga 1260 acaacctaa 1269 // ID HAT7_CB repbase; DNA; CBR; 820 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000378; DNA; HAT7_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-820 RA Pavlicek A. and Jurka J.; RT "HAT7_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(8), 206-206 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC HAT7_CB contains 12bp-long TIRs and is flanked by 8bp target CC duplications. The central part shares similarity to Hobo CC transposases. XX SQ Sequence 820 BP; 207 A; 192 C; 167 G; 254 T; 0 other; cagggttgca atctgacggg ctggccggcg ggccggcccg agggaaaaaa accagggccc 60 ggcccggccc ggccggccgg caattaatta atattttttc tgaaattttt ttttttaaca 120 ggcccgtgat cttgtcacaa agttaatgcc atcagctatt ccctccacta ctcaacccac 180 ctcatcgcag aagtcaaatc taattgcaaa gttatatcat tcggtcagtg accaagcgaa 240 ctcaacatcc acttcttcgg aaatctcaag atatctctcc gagtactacg atccttcaac 300 gaacgaatcg gttgaggagt attggaaaag aaaaagattc gaataccccg gactgtactc 360 agcagcactt ttcgtttttt cgattgttcc cagtgaagcc atgtgtgaga ctacgttcag 420 cactgcgtcg tttttgttag ataaaacaag aacaagatta ctgtacaagc gtgtggagat 480 ggtcgttctg ggttcgcaaa tagccacgaa atttccacac tggctcgact gattctctca 540 ctaattgtag tgatttttct agttaatttt atgttacttt tctatctttt ttgttggatt 600 ggttgatatg agctttaatt ttctcccccg gtttccattt ctttgtttcc ccttgttcat 660 ttatacggtt tttacattgt tatgctactt gttaagaaat aaattcaaat aattcttcaa 720 taatttctgt tttttcttaa attcgaacgg gccgaaccgg ccgaaccggc cgggccggag 780 aaaaaataat ctcggcccgg cccggccggt tgcaaccctg 820 // ID MUDR1_CB repbase; DNA; CBR; 971 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000216; DNA; KW MUDR superfamily; MUDR1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-971 RA Pavlicek A. and Jurka J.; RT "MUDR1_CB - a family of nonautonomous MUDR-like transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC Contains 255bp-long TIRs and is flanked by 9bp target CC duplications. CC TIRs similar to CEMUDR2, LONGPAL2, LONGPAL3. Partially similar to CC MUDR2_CB and MUDR3_CB. Variable internal part. XX SQ Sequence 971 BP; 324 A; 171 C; 182 G; 294 T; 0 other; ggcaaattct cttatacaac catctcttat actacttttc tcttatacta ccgagtctct 60 tttactacca ctgtctctta tactactttt ttcaatgtgt ctctcatact accaagtctc 120 ttttactacc aaggtctctt atactacttt ttaccacaga gtctcccata ctaccaaaag 180 aaacaaggct ttcggcctaa tcctatagtt ggcaaaaaat ttgggggtac aagggggtac 240 aactgattta ggggtacata caggggtaca agattcgggg gtacaaagaa ggagtttctg 300 aattgaaaat ctcagaaaga acttggaatt tcaggaatct gagaatttcg gaaaatttca 360 tacggcagaa aatttttctc atcgaaaaac gaaaaattgg gcaaattgag gaagaattga 420 gaaaaaacaa aaattggtat gggttttaaa acctaaatta tcaaaaagaa caaaagacaa 480 tgagaagtga aaattttctc cgtaattttt gaaaattcag aaataagatt ctgaagtcct 540 gaaattctga ggttttgaag ttctgactga tcggaagttc tcagattctc agttttccaa 600 gttcgaaatt ctaagaattc tgagattttc agaaactcct tctacccccg ataccccttt 660 gtaccccaga atcattgtag ttttcacccc cgaatttttg tacctacgaa ttttgtaccc 720 ctaaatcagt tgtaccccct tgtaccccca aattttttgc caactatagg attaggccga 780 aagccttgtt tcttttggta gtatgggaga ctctgtggta aaaagtagta taagagacct 840 tggtagtaaa agagacttgg tagtatgaga gacacattga aaaaagtagt ataagagaca 900 gtggtagtaa aagagactcg gtagtataag agaaaagtag tataagagat ggttgtataa 960 gagaatttgc c 971 // ID MARINER14_CB repbase; DNA; CBR; 1642 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000148; DNA; KW MARINER14_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1642 RA Pavlicek A. and Jurka J.; RT "MARINER14_CB - a young family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(4), 111-111 (2004). XX DR [2] (Consensus) XX CC MARINER14_CB copies are >99% identical to the consensus. CC Similar to Tc3 and MARINER8_CB. Central regions bears similarity CC to transposases, however, no copy seems to harbor an intact ORF. CC MARINER14_CB contains 212bp-long perfect TIRs and is flanked by CC TA target duplications. XX SQ Sequence 1642 BP; 477 A; 347 C; 327 G; 491 T; 0 other; cagtgcgttt caatattata cgtccactct tgtttttggc cgtaacttga gaaccggttg 60 agatatcaat ctaattttat taaaattgaa ttcagagcaa caaattacat ctagaaaacc 120 atttttgaga aaaaatattg aaaactactc gagatacaga gaaaaatctg aaaatgtgac 180 atttgcaacc gtttcaaaat tatacgtcca cttcaaaggt atgtcgatct tgacctttgg 240 cggagccgga aaagcttgaa tttagttttg ttttttgctg ccaatgtgag aaactttttt 300 cattatgctt ttccttgttt ttctccactt ttcaacatgt ctcgtggcca tttgctcact 360 gatgctgaaa aagccttcat cgacgcgttc aaaacctctg gttggaccaa cagggctatc 420 gcgaaacatc taaatcgttc ccacgattgc attaatcgtt ttgtatcgaa ccggacccgc 480 aacaatcaac ccaacaaggc tggacgtcct ccaaaactca attcaagagc caaacgatca 540 atcgttcgtg tggcttcaaa caccatgaag tcttgtaatg atatcaaaaa agagctgaat 600 cttggagtga gcaagtgtac aatctggagg gctcttaagg atgatccaaa catcaaaaga 660 gcagtcatgc gccctgctcc gaagctcact gacaatcaca aaactcgccg tctcgacttc 720 gctcgaaaaa acatgggaac caactgggat aaggtattaa atttaaaatt atctatccaa 780 attatcttat cttttacagg taattttttc ggacgagaaa aaattcaatc ttgatggacc 840 cgacggattc aaatcgtact ggcacgactt gcggaaggat ccagccgttt ttgccaaaag 900 gaatttcggg ggaggcagtt tgatggtatg gggagcattt gcttcggctg gatacttgga 960 gctcgctttc accacttgtc gaatgaactc cacagactac caagacgttc tccagaacca 1020 ccttatcccg tttcgtcgtc gattcagtcg ccgccagttc atttttcagc aagataatgc 1080 tgcaatccat gtcagccgct ccactttgga ctggttccaa tcgaaaaaca tcgatgtctt 1140 gccatggcca gcttgctctc cagatctgaa tccgatggaa aatgtttggg gcgagctggt 1200 tcgtcgtctt taccgccatg gaaagaagta tgctagtatt ggagagcttc gggatgcgct 1260 gattgctgag tggagtctgc tggagcagga gttcaagact aagagcaccc aatacatcca 1320 aaaccttatc aaatcgatgc caaatcgtct cttcgatgtc attgctggta aaggttcatc 1380 cacaaagtat tgaaatattt tttattctct attttagcat tgattctgag agtggacgta 1440 taattttgaa acggttgcaa atgtcacatt ttcagatttt tctctgtatc tcgagtagtt 1500 ttcaatattt tttctcaaaa atggttttct agatgtaatt tgttgctctg aattcaattt 1560 taataaaatt agattgatat ctcaaccggt tctcaagtta cggccaaaaa caagagtgga 1620 cgtataatat tgaaacgcac tg 1642 // ID MARINER58_CB repbase; DNA; CBR; 264 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000113; DNA; KW MARINER58_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-264 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-264 RA Pavlicek A. and Jurka J.; RT "MARINER58_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 329-329 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 90% identical to the consensus. CC MARINER58_CB contains 19bp-long TIRs and is flanked by TA target CC duplications. TIRs similar to MARINER23_CB, MARINER35_CB, and CC MARINER30_CB. XX SQ Sequence 264 BP; 87 A; 60 C; 43 G; 74 T; 0 other; ccgtaaaaac tgtaatataa cgccacctgt aatagaagac cccctctaat acaacgccac 60 ccttatgagg tgattggagg tagcaaaaca aagtttttat gcttgattaa cagagtagca 120 gtggaatcta gaaatttcgc accatttttt ttcattttgg taccctgtta atcaagtaaa 180 aaaccaattt ttgttacctc gcatcatccc aaaacacccc tccgaaaaat agaacgccat 240 ggcgctatat tacaggtttt acgg 264 // ID MirageN1b_CB repbase; DNA; CBR; 1126 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 21-MAY-2011 (Rel. 9.06, Last updated, Version 2) XX DE MirageN1b_CB is a nonautonomous DNA transposon that belongs to DE the Mirage superfamily. XX KW EnSpm; DNA transposon; Transposable Element; Nonautonomous; KW nonautonomous DNA transposon; Mirage superfamily; MirageN1b_CB; KW MirageN1a_CB. XX NM MirageN1b_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1126 RA Kapitonov V.V. and Jurka J.; RT "MirageN1_CB, a family of nonautonomous Mirage transposons in the RT Caenorhabditis briggsae genome."; RL Repbase Reports 4(6), 188-188 (2004). XX DR [1] (Consensus) XX CC MirageN1b_CB is a subfamily of MirageN1_CB nonautonomous DNA CC transposons that belongs to the Mirage superfamily detected CC previously in the C. elegans genome. These elements are CC characterized by 15-bp terminal inverted repeats and 2-bp CC target site duplications, they are over 97%identical to the CC MirageN1b_CB consensus sequence. This consensus sequence is CC 87% identical to the MirageN1a_CB consensus sequence CC representing the MirageN1a_CB subfamily.MirageN1b_CB and CC MirageN1a_CB are nonautonomous transposons whose autonomous CC counterparts were relatives of Mirage1_CB. XX SQ Sequence 1126 BP; 342 A; 221 C; 221 G; 340 T; 2 other; cacaggtgat tcgtgattga ccaattacag atgaagagct ataaacgacc caattactca 60 cctaccgcaa actagtgctt ctacaattga acattcacga gcacattgcg tatcttacta 120 actgacccta taaaaggtcc acaattgacc aatcgcgaaa aaattcttgt ttttcctttt 180 tcgaagttct ttcacctatt ttggttattt ttcatcgttt ttttttcagt ttccttcgca 240 atttttgtcc gtaaattatt atttaaccta caagagcata ctagaatact gtctcagcca 300 gtattttgct ttttatttgc agaaaaattg aaaaaatggc caggagacaa atgtcggaag 360 ctagaagtcg aaattttggt ttattcagga grtagcactg ctactgtact ttcaaaaggt 420 aagaagcgtt cagaaagtcc gaatttcaaa tccaattttt acagggagcc aggaaattct 480 caattttctg gtacgtccac tgagtactcc ggaaaagaaa cgactgagaa agaggaagga 540 agaaaaactg gaacggtggg tagatttgaa aaaaaatctg agaaaaaact ttagatttca 600 gtcggaagtg tcaaattcgc tgatttcgag aaaatttcca gccgataact tctgtcagag 660 gtatagtaca aaaattagtg ggagcttaaa atttcgawaa atcatttcag tttgctaacc 720 gagattctac agcgtcttct cctcccccac ttggaccgtc atcgaaaaag acaaaagctg 780 acagaagtag aagcttcgac gccgttccag ccaatacgat gacagcggaa gagaataata 840 taacttttaa ttaattgttt tttcgttttt ccttgttttt tctgtgcaat aaacaatttt 900 tagcagctgc tagcttccag attcgaaaaa atatatgcca attattgctc tcgcgacaag 960 ccaattgtag gagatttgct cgcgataggc ggaatattgg tcgtttgcgg tggcgctttc 1020 gcgattggtc tgtaaatggc ctgcggcagg catgttccga tgtacccatg gcgattttcc 1080 gcgaacaata tttcacctat tatagacgct gcgcgaatca cctgtg 1126 // ID GYPSY1-I_CB repbase; DNA; CBR; 4251 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE GYPSY1-I_CB is an internal portion of the GYPSY1_CB LTR DE retrotransposon - a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; KW Cb000423; GYPSY1-I_CB; GYPSY1-LTR_CB; Gypsy clade; LTR; RNase-H; KW gag; integrase; mag lineage; protease; reverse transcriptase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 493-1933 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-4251 RA Pavlicek A. and Jurka J.; RT "GYPSY1_CB - a young family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 225-225 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC Flanked by 5bp-long target duplications. GYPSY1-I_CB is related CC to GYPSY21-I_AG, GYPSY3-I_AG, and GYPSY18-I_AG. The 5' LTR (24bp) CC and the internal part encodes a 1390aa long gap-pol polyprotein. CC LTRs are listed as GYPSY1-LTR_CB. CC GYPSY1-I_CB_ORF: N-24nt - 4147 (1390 aa) CC MPPPGDTTTGDQATELADLTKQIGLLVNIFAKLAQASANAPLTTTPTSGHNLLVESISKRIPIFTYDPDD CC DQTFDTWYARYEDVLTKDGESLEEGEKSRVILSKLSSKEYSHFTNRILPKLPNELNFAELISKLRETFKS CC TSSIFRKRQDFLRTEYFGGAIEEYTGQVLRKFTSSEFKKMTDDQVCCMVWINGLRDNTYSDIRTKALQVM CC EAKPECTLLELEQNIKRLLDVRADSKSVCKLEPKSSEINAISTKETKRDKPQKAPPSPCYKCGGNHWAKE CC CQKQVTCHLCKKDGHIAKFCRTKKRETDQKGKNNRIKSVMVRSASTFEPSRIYRIVTINGTKIQMQMDTG CC ADVTLISTKDWNRLGRPQLQAPTIQVKSANHQPIKVRGSFQCNFVINGNVASGQAHVAETGTLLGTDWIS CC KDPTLWKTLNQQICAVSSDVGSACDYLDNTREQLKSNLEKEFNNVFQPGLGKCTKTKASILLKPGAQPVF CC RKARPVPFAALTTVSEELERLQQSGVISPVDHSEWAAPIVLVKKKNGSIRMCSDFSTGLNDSIQQHQHPL CC PTADDIFATLNGGKYFSQIDLAEAYLQIEIDEQAKQMLCINTHRGLFSYNRLPFGVKSAPGCFQQVMDAM CC ITGLDGAAAYLDDIIITGSTIEEHNSRLKSVFKRIDDYGFRVKLEKCTFLMPRITFLGFCIDKDGRRPDP CC EKVTAIQQMPEPKNDSQVRSFLGLIQFYGTFIKELFKFRPPLDALTKKDAEFKWTSECQSSFDNIKQMLQ CC SDLLLTHYDPKLPIIVAADACQYGIGAVISHRFPDGSEKAIYHISKALTAPQRNYSQIEKEAFGLITAVT CC KFHKFIHGRHFTLKTDHKPLLSIFGEKKGIPIYSANRLQRWATILLNYDFTIEYVNTHDFGQADALSRLI CC SEQIQQKECEDRVIAQVEMDVITNLVNTCEQLPVTAEMVKDYSKKDTLLAEVYEYTTSGSWPNNIDKSSQ CC IVFFHNRRDQLSIVSDCLMFNDRIVIPVSLRARVLKMLHRAHTGMVRMKQLARTLVYWPSIDKDIENIVR CC SCDQCAAVSKNPIKNTLCSWPISTKPWQRVHVDYAGPVEGTYYLVVVDSFSKWPEIVPTTSITSAATINI CC LRKMFAQFGDPETLVTDNGTQFTSAQFHDFCKDRGIQHTRSPPFHPQSNGQAERFVDTLKRALGKLKGEG CC NTDASLYLFLQSYRSSPCTASPNGSSPAENFIGRKIRTFLDQLLPTDQLPNSHDTEMEKQFNNQHGARCR CC NFNVGDKVYVKDYRSINTTTWIPGTIQRRIGRTMYRVTVENNNFWIRHTNQLRRRDTPTSFDVPLDTMDT CC MDAIDWTPLSTTLPDRSPPTPAPILPGSPTAPSPKPIRKSTRTVKPPPKFVMKPNKKSYH. XX SQ Sequence 4251 BP; 1329 A; 1069 C; 875 G; 978 T; 0 other; actggcgatc aggctacgga attggcggat ctcacgaaac aaatcggttt gctagtcaac 60 atcttcgcaa aactcgctca agcatcggca aacgctccgt tgacaactac acccaccagt 120 ggacacaatc ttctagtgga atcgatatca aaacggattc caatcttcac ctatgatcca 180 gacgacgacc aaaccttcga cacgtggtac gctcgatatg aggatgtcct gactaaggat 240 ggtgaatctc tagaagaagg tgagaaatca agggtaattc tgtccaaact tagctcgaaa 300 gagtactctc acttcacaaa tcgtatccta ccgaaactcc cgaacgagct caactttgcg 360 gagctcatca gcaaacttcg agagacattc aaatcgacat catcgatttt ccggaaacgc 420 caagatttcc tccgcacgga atattttgga ggagcaattg aagagtatac tggacaggtc 480 ctcagaaaat tcacatcgtc cgaattcaag aagatgactg atgatcaagt atgctgtatg 540 gtctggataa atggattacg agataacact tactccgaca tccgaacaaa ggctctccaa 600 gttatggaag cgaaaccaga atgtacactg ttagaattgg agcagaatat caaacggctt 660 ctggatgtgc gagctgactc caaaagcgta tgcaaactgg aaccaaagtc atcagagatc 720 aacgccataa gcacaaagga aaccaagagg gataaaccgc agaaggctcc accgtcacca 780 tgctacaaat gcggcggtaa tcactgggca aaggagtgcc aaaagcaggt cacatgtcat 840 ctatgtaaaa aagatggtca tatcgcaaaa ttttgcagaa ccaaaaagcg agaaacagat 900 caaaaaggca aaaacaacag gatcaagtcg gtgatggtta gaagcgcatc cactttcgaa 960 ccatctcgta tctaccgtat cgtcacaatc aatggaacaa aaatccagat gcagatggat 1020 acgggagccg acgtcacttt gatcagtaca aaagattgga atcgactggg tcgccctcaa 1080 ctacaagcac ccacaatcca agtcaaatca gcaaatcatc aaccgataaa ggtcagagga 1140 tctttccaat gcaatttcgt cataaacgga aacgttgctt cgggacaagc acatgtcgcc 1200 gaaacgggta cactcctcgg aaccgactgg atctccaagg atcctacgct ctggaaaacc 1260 ctaaatcaac aaatctgcgc agtaagttcc gatgttggat cagcatgcga ctacctggac 1320 aacacccgcg aacaactgaa gtcaaatttg gaaaaggaat tcaacaatgt cttccaacca 1380 gggctcggta aatgtaccaa aactaaagct tctattctgc tgaaaccagg ggcacaacca 1440 gtgttccgta aagcacgacc agtcccattc gcagcattga ccacagtatc agaggagttg 1500 gaacgtctac agcagtcagg tgttatctct ccagtggatc attcggaatg ggcagcgccg 1560 atagttcttg tcaaaaagaa gaatggatcg attcggatgt gctcagattt ctctaccggg 1620 ctcaacgatt caatccaaca gcatcagcat cccttgccaa ctgcagacga catattcgct 1680 actttaaacg gtgggaagta tttttctcaa atagatttgg ccgaagccta tttacagatt 1740 gaaatcgacg aacaagccaa acagatgctc tgtatcaata cacatcgagg cttgttcagc 1800 tacaatcgac tgccattcgg ggtcaaatct gctccaggat gttttcaaca agtcatggat 1860 gcaatgatca ctggactgga cggagccgcg gcctaccttg atgacatcat cataaccggg 1920 tcgacaatcg aagagcacaa ttcacgactg aaatcagtgt tcaagcgaat cgacgactat 1980 ggattccgcg tcaaactgga aaaatgcaca ttcctaatgc cgagaatcac attcctcgga 2040 ttctgcatcg acaaagatgg cagacgaccg gatcccgaaa aggtgactgc gattcagcag 2100 atgcctgaac cgaaaaacga cagtcaagtc cgctcatttc taggactcat acagttctac 2160 ggcaccttca ttaaggaatt attcaaattc cgtccaccac tggatgcatt aactaagaag 2220 gatgctgaat tcaaatggac ttctgaatgc caatcatcgt ttgacaacat taaacaaatg 2280 ctccaatcgg atcttcttct cacacactac gatccgaaac tgccaataat agtcgctgcc 2340 gacgcttgtc aatatgggat cggagcagtg atctctcatc gttttccaga tgggtctgaa 2400 aaagccatat accacatcag taaggctctc actgcaccac agcgcaacta cagtcaaatc 2460 gaaaaagaag catttggact catcacggcc gtcacgaagt tccacaagtt tattcatggt 2520 cgacatttca cactgaaaac ggaccacaag ccgctccttt cgatcttcgg agagaaaaaa 2580 ggtattccta tttacagtgc aaatagactc caacgttggg ccacaatctt gctcaattac 2640 gacttcacca tcgagtacgt caatactcac gactttggac aagctgatgc cctctcaaga 2700 ctcatttccg aacaaatcca acagaaggaa tgtgaagatc gagtcattgc ccaagtcgaa 2760 atggacgtga ttacaaatct agtcaacacg tgtgaacaat tgccggtgac agctgaaatg 2820 gtcaaagact attccaaaaa ggatacactt ttggcagaag tgtacgagta cacaacctca 2880 ggttcgtggc caaataatat tgataaaagc tcacaaatcg ttttttttca caaccgacga 2940 gatcaactat ccatcgtatc tgactgtctg atgttcaacg atcgaatcgt catcccagta 3000 tcactcagag cccgtgtgct caaaatgctc catcgtgctc acactggaat ggtgagaatg 3060 aaacagttgg ctcgaactct tgtttactgg ccgtcaatcg acaaagacat tgagaacatc 3120 gtcagaagct gtgatcagtg tgcggcagtg tcgaagaatc ccatcaagaa cactttatgc 3180 tcttggccta tttccacaaa gccatggcaa cgtgtacacg tggattacgc cggacctgtc 3240 gaaggaacct attatctagt agttgttgat tccttctcaa aatggccaga aattgttcca 3300 accacatcca ttacatcagc ggcaaccatc aacattttgc gaaagatgtt tgcacagttc 3360 ggagatccgg agacactggt gaccgataat ggaacacaat tcacatctgc tcaattccac 3420 gacttctgca aagaccgagg aatccaacac actcggtccc cgccattcca tccacaatca 3480 aatggacagg cagaacgttt tgtggatacc cttaaaaggg cattaggcaa gttaaagggg 3540 gagggaaata cagatgcttc cttgtatctt ttccttcaga gctatcgctc ttcgccttgt 3600 accgccagtc caaatggctc atcacccgct gagaacttca ttggccggaa gatccgtaca 3660 ttcctggatc aacttctccc aaccgaccaa cttcccaact cgcacgacac agagatggag 3720 aagcagttca acaaccagca tggtgcacgt tgccgcaact tcaacgtggg agataaggtt 3780 tatgttaaag actaccgtag cataaatact accacttgga ttccaggaac tattcaacgt 3840 cggattgggc gtacaatgta ccgcgtcact gtggaaaaca acaacttctg gattagacac 3900 accaatcaac tgcgccgtcg tgacactcca acttcgttcg atgttccact cgacactatg 3960 gacacaatgg acgctatcga ttggacaccg ttgtcaacaa ccttgcccga ccgttcacca 4020 ccgactccag cgccaatact tcctggaagt cccacagcac catctccaaa acccatccgg 4080 aaatctacac gtaccgtcaa accaccacca aagttcgtca tgaagccgaa taagaaatcg 4140 tatcattaat ctaggaatgc cccaaacttt agtttaagaa ttgttagtat ttctaggatc 4200 tcttttagtc tagttcattc tttgtatgtt catcatagtt aaaaggggag g 4251 // ID MARINER38B_CB repbase; DNA; CBR; 1630 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000436; DNA; KW MARINER38B_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1630 RA Pavlicek A. and Jurka J.; RT "MARINER38B_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(8), 209-209 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER38B_CB contains ~400bp-long TIRs and is flanked by TA CC target duplications. TIRs similar to MARINER38A_CB and CC MARINER38C_CB. XX SQ Sequence 1630 BP; 478 A; 342 C; 333 G; 477 T; 0 other; cagtgctcca caaaatgatg attccaccct ccgtttgtac tgaaacacct atttaggtca 60 atattcgtga aaaggtgtca acatgaaaaa taaaggtctc ccttcaaaac ctacgtacga 120 aaaatttgga gccatcaacg tgacccggaa acgagaaacc ggaaaaattc caaaaatcac 180 gttttggccg atccacaaaa gtttaatgct tccactctga aaaagtgaga ttttggaggt 240 tttgaagctc tgcggccact ttttgaaggc ctgaatttga agaattttga gattctgacc 300 cccatacaca gagaccataa tacacggtta ctgaaatccg gattccggat atcggatatc 360 cggatttccg gattccggaa tctgaatttc cggattcaaa attccggatt acggtttttt 420 tggattctgg attatgttta ctgaattgtg tgtactgaat ttcagaatat gtactccgga 480 ttctgtgttc cggattccgg attatggatt ccggttttcc ggattagctt tttgaatgaa 540 ttaaaatgtc ccgagaatct gaatttcagg ttttcttgac aaacaagcat ttcagaaagt 600 ttctgggagg ttacgaaagc ttctgaggtt ctgagggatt ctgaatcaac ttggaatttt 660 gagagattct ccaggatcat gagagacggc ccagtagatt gcgttctaac taccacgacc 720 tccaaaaaca tcatgcatga agacgatatt ccaattcatg tttctactcc aaaaaggcga 780 aattccgaga cgatgagttg atagtcggat ccgtcttctt cgaaacaaaa aactgtttga 840 ttggacctgc cgacgagatt gtcgttcttg ccatcacgcc ttcatctgtg aaacttcttc 900 acgagaatct tattttttgt ttttggaagt cgtagttaga acgaaatcta ctgggccgtc 960 tctcataatc ctggagaatc tttcaaaatc ccaagttgat tcagaatccc tcagaatctc 1020 agaagctctc gtaacttccc ggaaacttcc tgaaattctt gctcgtcaag aaaacctgaa 1080 tatcagattc tcgggacatt taaattcatt caaaaagctg atccggaaac cggaatcgaa 1140 aatccggaat ccggaatcca gaatccggag tgcatattcc gaaattcagt acacacaatt 1200 caatacacat aatccagaat ccaaaaaccg tgatccggaa ttttgaatcc ggaaattcgg 1260 attccggaat ccggaaaacg gatatccgga atccggaatt cagtaaccct gtattaaggt 1320 ctcagtgtat gggggtcaga atctcaaaat tcttcaaatt caggccttca aaaagtggcc 1380 gcagagctcc aaaacctcca aaatctcact ttttcagagt ggaagcataa ttttgtggat 1440 cggccaaaac gtgattttcg gattttttcc ggtttctcgt ttccgggtca cgttgatggc 1500 tccaaatttt tcgtacgtag gttttgaagg gagaccttta tttttcatgt tgacaccttt 1560 tcacgaatat tgacctaaat aggtgtttca gtacaaacgg agggtggaag catcattttg 1620 tggagcactg 1630 // ID piggyBac3_CB repbase; DNA; CBR; 526 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000193; DNA; KW palindromes; piggyBac superfamily; piggyBac3_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-526 RA Pavlicek A. and Jurka J.; RT "piggyBac3_CB - a young family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC piggyBac3_CB contains 230bp-long TIRs and is flanked by TTAA CC target duplications. Related to piggyBac4_CB and piggyBac5_CB. XX SQ Sequence 526 BP; 165 A; 97 C; 97 G; 167 T; 0 other; aggtggtgtg cggtgaaaaa ttttattgct ttattttgtg cagaaatcca tgtagattcc 60 cataaaaata aagaaaaaat tcaaaaaaaa ttccttcatt gagaaaaacg gcatcgaaaa 120 gtcaaagtgg gaaccggtgg cctagcggcc aggtgtgagt tttctaggcc aactgccggt 180 aaaagcgcgc gaaattcgaa tttttattga ttttcagtgt tttctctgat gttttttaaa 240 gatttcaaaa tgtttttgtt aatttcctcc caggtgtatg aaaaaacctg acaaaaatca 300 gagaaaacac tgaaaatcaa taaaaattcg aatttcgcgc gcttttaccg gcagttggcc 360 tagaaaactc acacctggcc gctaggccac cggttcccac tttgactttt cgatgccgtt 420 tttctcaatg aaggaatttt ttttgaattt tttctttatt tttatgggaa tctacatgga 480 tttctgcaca aaataaagca ataaaatttt tcaccgcaca ccacct 526 // ID DNA2-4_CB repbase; DNA; CBR; 215 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000037l; KW DNA; DNA2-4_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 3-215 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-215 RA Pavlicek A. and Jurka J.; RT "DNA2-4_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC DNA2-4_CB contains 34 bp long TIRs and is flanked by TA target CC site duplications. XX SQ Sequence 215 BP; 77 A; 27 C; 32 G; 79 T; 0 other; ataacaagta gtgattttca aaagttttaa ttttgggaaa aatattcaga aagtgttaat 60 atttctgtta tatttgttga aaaaacacgt tgctcccaaa aacttaacgg tccatctttt 120 gggagattca aaagattcac gtggctcaca aaaatttttg aaatttcagt actttgatgt 180 gaaaattaaa acttttgaaa ttcactactt gttat 215 // ID piggyBac10_CB repbase; DNA; CBR; 841 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000332; DNA; KW palindromes; piggyBac superfamily; piggyBac10_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-841 RA Pavlicek A. and Jurka J.; RT "piggyBac10_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC piggyBac10_CB has a palindromic structure and is flanked by CC TTAA target duplications. Similar to piggyBac4_CB. XX SQ Sequence 841 BP; 262 A; 162 C; 151 G; 265 T; 1 other; agggggactc cgaccaaaaa aattatattt gatttttttg tttcaaaatg ttctcgaagt 60 aaggtatttt tataatacta atacgaaaaa attcagaaaa aaagtcgaag tccctgaaaa 120 acgcagacaa aattgaagcg ccgctcagtt ctcgtcaacg agggactaga aaaatcttga 180 gttcggccac gcggccacac atttttcaat ccaattttcg ccgttttcag ccgttttttt 240 ctgtaatttc tgtaagaatg aaactgtttt atcaactatt atataaagac ggcaaaaaaa 300 gtgtgttcaa gtcaacattg attacacgag cgatggagaa gcgacgctgt ccgtcagaag 360 aagtaaacat ttcgtttcct gcaattttac tgccaaaatt gtcgcccata atctcaatcc 420 atttcactct ttcagtttca tcagaagtaa caatgatgag ctttcgaaca ggcttttggt 480 cacatcaata ctgacagcgt cgcttctcca tcgctcgtgt aatcaatgtt gacttgaaca 540 canttttttt gccgtcttta tataatagtt aatgaaacag tttcattctt acggaaatta 600 cagaaaaaaa cggctgaaaa cggcgaaaat tggattgaaa aatgtgtggc cgcgtggccg 660 aactcaagat ttttctagtc cctcgttgac gagaactgag cggcgcttca attttgtctg 720 cgtttttcag ggacttcgac ttttttctga attttttcgt attagtatta taaaaatacc 780 ttacttcgag aacattttga aacaaaaaaa tcaaatataa ttttttggtc ggagtccccc 840 t 841 // ID DNA2-2_CB repbase; DNA; CBR; 469 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.02, Created) DT 07-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000010; KW DNA2-2_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-468 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-469 RA Pavlicek A. and Jurka J.; RT "DNA2-2_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (07-MAR-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 86% identical to the consensus. DNA2-2_CB CC is flanked by TA target site duplications. XX SQ Sequence 469 BP; 149 A; 86 C; 87 G; 147 T; 0 other; cagtaccggt caataagata tacaaaaaac gtatttttca gttgattttc ggccattttg 60 accattttca ggagtctgga gctcggctgt caagtttccg atcactttga aaattttgga 120 gggtgtaaaa cagacctaga ttgaaaactt tgcattcaca gaattttttg aaaattccta 180 gtttttcagc tatttgccga tttctgaaag acacctgttt tttcacgttt tcagtacaaa 240 aacgggccaa aaaggggtgt ctttcagaaa tcggcaaata gctgaaaaac taggaatttt 300 caaaaaattc tgtgaatgca aagttttcaa tctaggtctg ttttacaccc tccaaaattt 360 tcaaagtgat cggaaacttg acagccgagc tccagactcc tgaaaatggt caaaatggcc 420 gaaaatcaac tgaaaaatac gtttttgtat atcttattga ccggtactg 469 // ID MARINER41_CB repbase; DNA; CBR; 2079 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000171; DNA; KW MARINER41_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2079 RA Pavlicek A. and Jurka J.; RT "MARINER41_CB - a young family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(8), 212-212 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER41_CB contains perfect 966bp-long TIRs and is flanked CC by TA target duplications. Related to MARINER40_CB and CC MARINER42_CB. XX SQ Sequence 2079 BP; 712 A; 339 C; 338 G; 690 T; 0 other; cactgctgga cataattata agttcacttt gaatttcgag ttttctcgaa aactgtgaat 60 atagactgaa cagcatatga acgcaataaa tactattttg aaatgtcaat taattaatac 120 cattcgatac cactatcgtt tcttgatttt ggaaatttcg aaaaaatcgg aaaaatgacc 180 cgaaaaaaag ggacataatt ataagttcac ttgaaacaat cgagcataac tcgggatata 240 ggttttgcac tgtgaggaaa ctgcaaatta taacaaatat aactcaatat agtcctatta 300 gcataagaaa cttggttgta tctatactca taattatgcc tcatccgttt ttggccagct 360 tatactgaaa atgaagtttt tcgttgataa atgttctgaa aattacgagg actctaactt 420 tttgagtttt ttagtattat tcttaaatgc attcctcatt taactgttga aaacattatg 480 attttttcac caaccggaga aaaaacccgc atttcagctc atttttatcg ctatgttcca 540 agtggtactg taccttgctc agtagaaact tgactgagct aattagcata taagaaagat 600 acactcgtgt ttattcagaa acatacataa aatcatgaaa atctgtattt gtgttcatgg 660 aatcacgcaa agtgtcggac cacataaatt ccaagcataa aattgggtta tggataggca 720 tgtttaagga gttgttttgt aaagaaggag acacgtaatc tgaaatttct ttttgtaatc 780 acacttgccg gttctcgaat ttacatataa ttagggagat tgtttaagca ttccggtata 840 gacaaacaat gaaccttgga aaactgcaat tttttgaaaa acatgaccta tttccgagct 900 ctcaattttt gtttagaaac agtttcacct attttaaagt tgctgaacat attggaaaag 960 tcgcaaataa aatatgcaaa aagattcatt ttgataggtc cactccaagt agaaaagaat 1020 cagtcagaaa cgtacgttac taacctcaga aggtacttca tatctcttcg gaatgaatgt 1080 ttcgaaatga gacgtcaact ataaaaatat aaattgcgac ttttccaata tgttcagcaa 1140 ctttaaaata ggtgaaactg tttctaaaca aaaattgaga gctcggaaat aggtcatgtt 1200 tttcaaaaaa ttgcagtttt ccaaggttca ttgtttgtct ataccggaat gcttaaacaa 1260 tctccctaat tatatgtaaa ttcgagaacc ggcaagtgtg attacaaaaa gaaatttcag 1320 attacgtgtc tccttcttta caaaacaact ccttaaacat gcctatccat aacccaattt 1380 tatgcttgga atttatgtgg tccgacactt tgcgtgattc catgaacaca aatacagatt 1440 ttcatgattt tatgtatgtt tctgaataaa cacgagtgta tctttcttat atgctaatta 1500 gctcagtcaa gtttctactg agcaaggtac agtaccactt ggaacatagc gataaaaatg 1560 agctgaaatg cgggtttttt ctccggttgg tgaaaaaatc ataatgtttt caacagttaa 1620 atgaggaatg catttaagaa taatactaaa aaactcaaaa agttagagtc ctcgtaattt 1680 tcagaacatt tatcaacgaa aaacttcatt ttcagtataa gctggccaaa aacggatgag 1740 gcataattat gagtatagat acaaccaagt ttcttatgct aataggacta tattgagtta 1800 tatttgttat aatttgcagt ttcctcacag tgcaaaacct atatcccgag ttatgctcga 1860 ttgtttcaag tgaacttata attatgtccc tttttttcgg gtcatttttc cgattttttc 1920 gaaatttcca aaatcaagaa acgatagtgg tatcgaatgg tattaattaa ttgacatttc 1980 aaaatagtat ttattgcgtt catatgctgt tcagtctata ttcacagttt tcgagaaaac 2040 tcgaaattca aagtgaactt ataattatgt ccagcagtg 2079 // ID DNA2-22_CB repbase; DNA; CBR; 976 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000223; KW DNA; DNA2-22_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-888 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-976 RA Pavlicek A. and Jurka J.; RT "DNA2-22_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 98% identical to the consensus. Similar to CC DNA2-21_CB. With DNA2-21_CB it also shares 13bp-TIRs and 2bp CC target duplications. XX SQ Sequence 976 BP; 288 A; 195 C; 221 G; 272 T; 0 other; ctcagcaaat tttcggcacg ctggggcaca gaggggcaca ggatttgctt caaaacggca 60 cagtgccgcg tttaaagtgc ccttggaaca cctcaaccgt gcccctagcg cgcgtatggc 120 gtgccgctac cgtgccggtg ccgtgcccct tcttgaacca tctgcgcatc tcgtgtctat 180 tcattgagtt tcgaaaatgc gttttatttt cataaattca tattttcatc gttttatggt 240 tttttagatt tgttttcttg tcttttccgt tggaaaatca tgaaatgtat ctctgtttag 300 ttttcagaca gttgctgtag cagatgttgg aaagtcggaa agagttggaa aggcaccgaa 360 gggaaatcgg tgagttgaga catgttcaag tgacaatgat atcgaaaatc ttttcagtta 420 tggagacgag aagggaagac gtcggaccgt ggagagataa cgaagattga gaaattagtt 480 tccgaccagc aacgaggaat atttcaagtg aaatatgtaa gttgggggca atatgtgaaa 540 acggaacatt gttgtttgaa aataacaaag ttcaaaaata tttgaaaata gtgttagttc 600 ctatttttca ggtcagagac acaaagccaa gcccgagatc aatgaagctg gagaagagga 660 ggaagaaact tagattcatc aaaattcatc aacctcatca ccacactctt cggaatcttc 720 cctacaaatt taaattttct aatcttttaa atgttctaat ttttgttgtt atccttttta 780 ttgagtttat aatgtaataa actgtttgat aataggtaaa tcgattaaaa cacccgattc 840 cgaagaaaaa acggcacaca tgagcacggc aacggcacgc aaaacgcatg cgtgccccga 900 ccccccgggc acgattaccg cgttgcagcg gcaccggtgc cccaagtagc ggcacatgtg 960 ccaaaaattt gctgag 976 // ID HAT14_CB repbase; DNA; CBR; 608 BP. XX AC . XX DT 31-JUL-2005 (Rel. 10.07, Created) DT 04-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE HAT14_CB - a family of nonautonomous hAT-like transposons. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000579; HAT14_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 78-553 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-608 RA Pavlicek A. and Jurka J.; RT "HAT14_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 5(7), 177-177 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 92% identical to the consensus. HAT14_CB CC contains 11bp long TIRs followed by a highly variable CC minisatellite region. Copies are flanked by 8bp target CC duplications. Similar to HAT10_CB and HAT15_CB. XX SQ Sequence 608 BP; 183 A; 131 C; 130 G; 164 T; 0 other; cagggctgtg ccacggccgg ctttgtctag gcctgaaaaa gccgcggcct cagaggcctg 60 aatacaaaaa gccgcggccg gcccaggcta gccgcgcggc tttttggaaa aattttgaaa 120 atggatttct tcctgaatat acttgttttc cgaaaaaaaa caactaccag agggacggtt 180 ttgaggtaca cagtctggaa tccagtaaaa aggatcagga taaaatattt ttcaagaatt 240 ccggaatacg aaatacggat tctgcgttcc gtcgtctcta attactagga ttgtgataat 300 tttcatcaac atagtcattt ttcagataat aacataaaat ttgaacactt tccggaaaaa 360 aaacattttc caaaaaattt ttagtattca agatttatgt tcaatttttt gtacgaaaga 420 ccgaaacaca atttgcgaac acacattgag aagtttgcat agggataagt agattatacg 480 ttcccaatcc ttcaaaaaaa ctaggtttca tttcacggga ttttatcagg ctagccgcgg 540 ccggcctcgg cttctaaaaa gccgcggctg gccgtggccg cggccggccg ccattttgca 600 cagccttg 608 // ID MARINER67_CB repbase; DNA; CBR; 915 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 02-FEB-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW Cb000594; MARINER67_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 3-914 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-915 RA Pavlicek A. and Jurka J.; RT "MARINER67_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 6(1), 38-38 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 99% identical to the consensus. CC MARINER67_CB has TA target duplications and 30bp long TIRs CC similar to MARINER16_CB. XX SQ Sequence 915 BP; 309 A; 164 C; 158 G; 284 T; 0 other; tatacagggt ggctgaaaag tattgagact ttgtttagac tcaatttctt gaaaacagaa 60 aacctgatga ctatgactgc tagtttttgc gaataatgat tatttttcta gtttacattt 120 agaaggaaaa ccttgaatac cttagtttta cctagttaga acatcaaatg tgatgtagaa 180 atatgagcga ctcgccgcac cttgttttta gtacttcatg atgtaaccgc agattgaaca 240 aaggttgaaa gttcatgctt tcaatatagt tggaagaact cttctagata atgctcctaa 300 aattttagat acctcgataa cctctattta tagatatgag tgatatcatg caaccgacca 360 aatgactcaa aaatggctca aattttcaat gttccagttc aaacagatag agtcaacaaa 420 atgttttgaa acttctcaaa ttatcatttg tgcacatttg aacaatttga cagtgaaaat 480 ctttcaagcg atccgggttt ttatcaagat atgccctttc gaaaaaagct catttagtac 540 tgcgcggcga ggcaaaagtt gagtttgcgg taatgctcct gcggcctaca aaatgacttc 600 aaattgaaaa tgaaagtgtt tgagacaaca atcgagagat gcactataca ttccatgtct 660 ttaaagctaa attggacttg accttttgac acagtaaatg gtcaaagatg accaattttg 720 tactgaaaaa gtagtcaaat tcaatcaaac tggaattgtg atcttgttac caaaagtaga 780 tacattctag tcatcaaaaa atctttagaa gtcttccagt tatccaaaaa catcaatatt 840 tctagaagga accggctcgc gccattccag tgactccttg aaagtagtct caatactttt 900 cagccaccct gtata 915 // ID MARINER1_CB repbase; DNA; CBR; 388 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000001; DNA; KW MARINER1_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-388 RA Pavlicek A. and Jurka J.; RT "MARINER1_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 88% identical to the consensus. CC MARINER1_CB contains ~26bp-long TIRs terminated by CA-TG bases. CC TSDs are 2bp-long. XX SQ Sequence 388 BP; 121 A; 70 C; 75 G; 122 T; 0 other; cagggtggcg cacaattacc cggactgata aaaacgggta tatctttaga cataagtatc 60 ttggaagcac gaaaattggt agaaatataa ttttacgttt gattcaaagc tactgaaatt 120 ttcaaagcga ttcctcaagt ctaggtattg ttatgattgt ccaaagatga acggcgtaat 180 gtttcttgca cgccgttgtg attttcatga gatgaagcaa ctttgacaag cgataactca 240 gctcaaagtt gatcaaataa tttgaaactt ggccagttta ctgatgaatt atttgaattt 300 ttgcactcca aatttgagcc cagtacaacg ctttactcaa attttatgct agtacaaact 360 ttagtccggg taattatgcg ccaccctg 388 // ID MARINER10_CB repbase; DNA; CBR; 1297 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000069; DNA; KW MARINER10_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1297 RA Pavlicek A. and Jurka J.; RT "MARINER10_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 85-95% identical to the consensus. CC Distantly related to TC4 and TC5A from C. elegans. MARINER10_CB CC is flanked by 2bp target duplication and contains ~590bp-long CC TIRs. XX SQ Sequence 1297 BP; 415 A; 243 C; 227 G; 412 T; 0 other; acaagggagg tcgttttaga aaggctttca gaattttctt attttttgac aggggttagt 60 tgacacgctc aaaaagcccc tgtcaaaatc tgtatatgca ctttttccaa aaatgctgaa 120 aatttttgtc tgaaagtttc caatttctta accattgtaa acctcacttt tctccgtcat 180 ttcgcctccc gggaacttcc ggaaacaccg ttgacatgta cacacttacg cactgttgtt 240 cccagcggtg aggtggccgg gtggttgtgg gcgcgtgttg taaagctgaa ggtctggggt 300 tcgattccct cacttttgaa attatctttt gctttttttt gatcaaattc ctagacatct 360 attcagggct caaaacaagt ttttggccag agtttttgag tttttgccga ttttcaaact 420 ttgaaaagac agaaaatatc aattttttca aagttaattt ttttcgaaaa tttccaagtt 480 tttggtggtc aactccatgc tagattttcg atgaaaattt tttcgttcga aatttttcaa 540 tttttgtatg gaatgtattt ttgtaaattt ttattatttt ctcatgattt atccaccctt 600 ttttgaccta gaacaatgca aaatcactta taattcattg tcatctttcg attttggacc 660 atttcattca ctgtttttcg acatattttg agtcgaaaaa gggctagaaa atcatgagaa 720 actaataaga actcacaaaa atacattcca tacaaaaatt gaaaaatttc gaacgaaaaa 780 attttcatcg aaaatatagc atggagttaa ccaccaaaaa ctttgaaaat ttcttgaaaa 840 aattaatttc gaaaaaattg atgatttctg cttttcaaag tttaaaaatc ggcaaaaact 900 cgaaaactcg tgccaaaaac ttatttggag cccgaaatag gtgcctagga atttgatcaa 960 aaaaagacaa aaaaaatttc aaaacgaagg aatcgaaccc cagaccttca gcttcacaac 1020 acgcgcccac aaccactcgg ccacctcacc gctggaaaca acagtgcgcg agggggttca 1080 tgtgaacggt gtttcccgga ggttcccagg aggcgaaatc acagaggaaa gtgaggttta 1140 caatggttaa gaatttggaa actttcagac aaaaattttc agcatttttg gaaaaagtgc 1200 atatacagat tttgacagga ggtttacaag ggtgtaaact aaccactgtc aaaaaataag 1260 caaattctca acccctttct aaaacgactt cccttgt 1297 // ID MARINER23_CB repbase; DNA; CBR; 462 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000006; DNA; KW MARINER23_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-462 RA Pavlicek A. and Jurka J.; RT "MARINER23_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 90% identical to the consensus. CC MARINER23_CB contains 25bp-long TIRs and is flanked by TA target CC site duplications. Distantly similar to MARINER22_CB. XX SQ Sequence 462 BP; 145 A; 94 C; 105 G; 118 T; 0 other; ccgtaaaacc tgtattagaa gggccccttt aatagaaggg cccctctaat agaagggccc 60 tccgagaggg gcttggaaaa atagaagggc cccctgtaat agaagggccc ccgtaataga 120 agggccctct gtgaaaaagg accccccttc aaaatgtgtt ttgaaatcag aaaatttccg 180 tactttttca gtggaaaata ttccgggaac tccacaattt aatagaaatt tgttgaaact 240 ctatttttcg atgaaaatct tgctaaattt tggtgaaatt ggcagatttt catgaatttt 300 gaacgaaact tcgtcgaatt tttcgatgca aaatttcgga aaaaaaactg gccggaaaaa 360 tagaagggcc ccctctaatt gaagggcccc tgtaatagaa gggccctccg gaggtacctt 420 ggaacaatag aagggccggc ccttctaata caggttttac gg 462 // ID GYPSY3-I_CB repbase; DNA; CBR; 8834 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 4bp TSDs; KW AP protease; GYPSY3-I_CB; GYPSY3-LTR_CB; Gypsy clade; LTR; KW RNase-H; gag; integrase; reverse transcriptase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-8834 RA Pavlicek A. and Jurka J.; RT "GYPSY3_CB - a family of LTR retrotransposons."; RL Repbase Reports 4(9), 229-229 (2004). XX DR [1] (Consensus) XX CC There is only one copy of GYPSY3_CB internal sequence in the CC genome. CC It contains fragments of gap and pol ORFs. This internal sequence CC was CC probably autonomous, all other elements contains just 5' CC fragments. CC LTRs are listed as GYPSY3-LTR_CB. CC GYPSY3-I_CB is related to CER1, CER2-I_CE, CER3-I_CE elements CC from CC C. elegans and Saci-2_INT from Schistosoma mansoni. CC GYPSY3-I_CB_ORF: 716-1277 (187 aa) gag fragment CC MDDLLESPTSSNGMEKSTLLQNPNESLVNELLNWEMPVPVQKETVSDDVEMKEVEDRKKAEKAEKAGGAE CC RVEEGVATEAEKSTKVRMVWEKQCCAEEDEEARKEALANLMKYAKGSLIHLEGILKPLDKRIEKKNGMIE CC LKNSEIVEMKRINAILENEILDLQIDGNRLESPRRPDSTKVKKVTEE CC GYPSY3-I_CB_ORF: 1307-1964 (219 aa) gag fragment CC MDIHALEDMKEIFRKTESIKKQKATLDELVNATETEKNWLQAQLTKQRQQWNEDKLKMRMLEERVRQYEE CC EDKWKVGNSQSNSYSRIGKNKESTDENSAKNGFQTQGDAFPSGPSTRRRMPMEDKCHMQGECGNSEELGE CC RRERPRTMMEGVNLSYGAHGDESGREYEEEVKQGYYQSVWGQGRQTHHQGEQGEGWKMVLAHKRYRSLPY CC SRLKERIPA CC GYPSY3-I_CB_ORF: 4158-5424 (422 aa) pol fragment CC MSPRVQWLAPSVCQANSEGKALENLFNSSSTPLELKKGDVIAVGELEGFDVVGDKAEHMEDEALDEYINS CC LGFHEQENAISINEISVTGNDRLKVICEQLKKGEVTPEEERVWKVVEEFQDTFAIDDCELGKAEVVQCEI CC ELKEGTEPIRQRPRPIPLAIRPEIKEMIRKMLKQGVIRESRSPWSCPVVLVKKKDGTVRMCIDYRRVNKV CC VKNNAHPLPHIESTLQSLVGKKIYSTLDCLAGYWQIPLAEGSKQITAFAIGSELFEWNVLPFGLVTSRAV CC FQATMEMVVEDLLGKCAYVYVDDLLVASETLEQHAEDLREILLRLRKSGMRLKAKKCHIARMEVEYLGHM CC TTPGGVKTEYLKVERMLNYERPTDKKGVHSFIGLFGHYRRFIWNFAAMACPLTPLTSSKREWVWGEEQET CC AF CC GYPSY3-I_CB_ORF: 5487-6687 (400 aa) pol fragment CC MTGENPFLIYTDASKKGVGAVLAQLGEDGEQHPILFMSKALTPAETRYHVTDLEALAILQALKRFKAIIY CC GAQIIVFTDHKPLMYLLKGSPLSDRLLRWSLEFMEYNMKVVYVAGKANAVADALSRGGCLKLEIDDAETT CC DLIGSLEVEEGEESNELEVAKWFDWLKEEEGWREVIQLLESGVSVGKVKVEGQKKKILVQNYMIIGGRLK CC NIEMEEKNRLVVPERERLKLVTQAHSGPLSGHFGTDKVWKQLKKEFYWPTMRAFIEKFIKGCTKCLCVND CC RPRLTAPLHPYETTSPLEIVACDLIDVGLSTLGNRYILTMIDLFTKIATAVPIQDKCAETVMRAFIERWA CC LGECRIPEMLLTDQGKEFANDHFKKFTQMMGIEHVMTKGYNSRANGAVDR CC GYPSY3-I_CB_ORF: 6700-7189 (163 aa) pol fragment CC MHIIAKKAAVPMEWDAQVPFAVYAYNTTLHGTTRESPLFLMTGKDPKGPLQMAGVDADGISYVDIDEYKH CC LMTQELLKIHKMARKNAEWERGRNKHLFDEKLKTEMRKYPQPGSRVLIEIPSEKLGARCPKLVNKWRGPY CC RVISCSENSATVTPILGKDKEKK CC GYPSY3-I_CB_ORF: 7482-8388 (302 aa) pol fragment CC MKAKKDVAPEATSDVSGRPHQDRAEQLQWEQEAMLLSQGPHPDFNGLPDYEACMRLSRCPSMMLVATTLP CC GWKDAFDFQRAQFLQKHFRSDLFKPKLFHCVRLPGVAEKEVPLSQKVFQINSKQEYVDAEGPKEIRKAKS CC VLMVVPFTTEETEIESWNRYIQKVDSKVEIWLVPSPRMDLNAGRIVTFGNLLSQMQRGDGGPLHVFSPDD CC QNKEHPLWSIAFNKNFRDYWRNVKAIADAKKLRWPGFHVDDKVDRKPEDAATASTSSSSRKIDRPTSSNC CC PRYQLYITTTMQKAGKGRYQHQ. XX SQ Sequence 8834 BP; 2810 A; 1586 C; 2218 G; 2220 T; 0 other; tgggggccga aggctttttc cgggactttt tcggtctttt gtgtgaatct tctacttgat 60 tacgttctat cgcttctttg ctcttgttta cttcgttcta tcagtctctt tgtcgttttc 120 acccgtttct ttgccgtttt tatcgatttt cactaaaaag gcgttctgtc cggccaccgg 180 cagcttcttg ccatattctc tgcgattttc gatctcttgt aaattgagaa ggcgttctgt 240 ccgggcaccg gcagcttcta gccacttttc tcagtttgtg ggagttaaat tagctcgatt 300 agctaaggat cggaggacat agtactggaa tcgacgtcgc gagtgagtgg agaggagtgg 360 tgaacaattc gccagcgtgt gtgtgagagg agtaaccgaa tttcgaagga gtgtcgagtc 420 aaaaattgga aattgttcga ttttgccaaa ttgggacttc aattgtgtgt caaaagaagg 480 aagtgtttca aagaagaact gattgctttc caacaagaat tcgtgaagtt ttgtgtcggg 540 aactgacttt tcgcctgaaa atcagccaat ttggtagcaa tggtatcaat ttcatcggga 600 ttttatcgat ttgttgtgct caaatttgct tcttcccgtt ttctgctcaa aatagcatct 660 ctacttggaa aagtgtaaaa atttgaatat tttgcagcaa gtttcggagg aaccaatgga 720 tgaccttctg gaatcgccga cttcgtcgaa cgggatggaa aaatcaacgt tgctgcagaa 780 tccgaacgag tcgctcgtca acgagctact aaactgggaa atgccagtgc cagtgcaaaa 840 ggaaacggtg tccgatgatg tggaaatgaa agaggttgag gatcggaaga aagcggagaa 900 agctgagaaa gccggaggag ccgaaagagt agaggaaggg gttgctacgg aagctgagaa 960 gagcaccaag gtaagaatgg tgtgggaaaa acagtgctgt gcagaagaag atgaggaagc 1020 aagaaaggaa gcactggcta atttgatgaa atatgccaaa ggatcattga ttcatttgga 1080 aggaatttta aaaccgttag ataagcgcat tgagaagaaa aatggaatga ttgagttaaa 1140 aaattccgaa attgtcgaaa tgaaacgcat caatgccatc ttggaaaacg aaattcttga 1200 cttacagatc gatggaaacc ggctcgaatc gccacgtcgc cccgactcca cgaaggttaa 1260 gaaggttact gaggagtaaa gtcgtctact aagttggtta aagaatatgg atatacatgc 1320 gcttgaagac atgaaggaga tattccgaaa gactgagagc atcaaaaagc aaaaagccac 1380 tctagatgaa ttggtcaacg caactgaaac tgagaaaaac tggttacagg ctcaactcac 1440 aaagcagcgg cagcagtgga atgaggacaa actgaagatg agaatgctgg aagagcgagt 1500 tcggcagtat gaggaggaag ataagtggaa ggtgggaaat tcgcaatcga attcatactc 1560 gagaataggt aagaacaaag aaagtacgga tgagaatagt gcaaaaaatg gctttcagac 1620 acagggagac gctttcccat ctggaccatc aactcgtcga cgtatgccaa tggaggacaa 1680 gtgccatatg caaggtgagt gtggaaatag cgaagagttg ggggagagaa gagaaaggcc 1740 gcgcacgatg atggagggtg ttaacctgag ttatggggcg catggagatg aaagtggaag 1800 ggaatatgaa gaagaagtga agcagggtta ttatcagagt gtatgggggc agggaagaca 1860 gacacatcat caaggcgaac agggggaagg ttggaagatg gtgctggcgc acaaacgcta 1920 ccggagcctt ccgtattctc ggctgaagga aagaatccca gcttgaatgc tttcgagaaa 1980 gctttcactt tgaaattcgg aatgtgtcca gaggagcaca aggttattct actggaaacc 2040 aagtacctat cgggaaaggc tgggaagatc ttcagagggt tgtaggagtg tgagaaaacg 2100 accgtgaaga aggtgttcca agcacttgct aacaggttgc gggtatcgcc ggcagatgag 2160 gctatgcgag caagaaatag gtggtcacgt gtactattcc attcagtcat ctggcggtaa 2220 cgaagaatta gccaaagaaa cgctcctctc ctttttcctg cacgtgctgg atatccatga 2280 agattttcag gttatttcca attttataac ctccaaaatt atggaaacaa attttttaga 2340 attgtgattg gttagaattc aaaatggtta attcctgcga gcacaaagaa tatgatgaaa 2400 tgaacagaaa aagaccagat tttctggata tcgaaaatcc cattcacgtc aaagctctga 2460 atgctctctt aaatatcatt gaaaaagggg accgatgtga ggccatcgga aaagtgtcgc 2520 cttatttcgc taccagcgca gtggagtctt tcaacgcaag agctgccttc tatgcaagca 2580 agaaacgatt ctagtattaa ttaaatatta tcattattct aagaaaaaat agtttttagc 2640 tcggaaaaag gattcaacag cagaacacaa cttgccgtta tgggctggaa cagcaaacag 2700 tgggatgagc tcaacggtaa acgcgttgta gtttcagaga aacgattttt taacaagact 2760 actaagcatt ggtcggttcg aaaactgaag acaccagcgg actatacatt cagaactgaa 2820 attgcacaaa ttactgtgca gctataagaa aaaggtttca caatacactg agaaaaagta 2880 gctagggtaa ttttgaattt tttagagaaa atagctaaca attctgatgg accagaagag 2940 aaagatgacg aatctgattt cgacgagcaa gaattggatc atgagttcgc agaagacatg 3000 tgtgaagtga atataaaaat taagctggca gcatgtgttc tatcaaaatt ataggttgac 3060 gatatttgga gccgcttgcg actagccgat accgacgaag aagaagaaga agaaaatgaa 3120 gacgaaaaag aagacagtga tagcagcatg aacgaagaag gaatgaaaat ggatgaagat 3180 gaggaagaag aggaagatga ggaaaacaat gaagtgagaa tgaagaaaaa gaaacgagaa 3240 gagcgaaaga tgaaagcaag aaaagaaacg aaaactggtc actagaaatt tactaaattg 3300 tcaaaactgt catacgaatt tctaacatat cttcgattct cactcaaaat tttccaaaaa 3360 cggggaaaaa tcaaattttc atatcatctc tttcagaaaa cacctattta taaagttact 3420 ggatttggtg aagagaacta agtttttcaa tttcgataaa accaacgaat ttctgttaaa 3480 aaacttcgat aaaatttcat tgtctctttt attttattgt tatataattt caacttattt 3540 tcaactgaat aaagcaacaa aatacgttca cagcggaata atcaaattgt ggctctagac 3600 agctaaattc tactcggaga gaaaggaaaa tggatgagaa ttggcgagaa aaaaaaatct 3660 acaataacaa ttaaacaatt tagtacatat ttaattaaag tagaaaaatt ataaaaagtt 3720 tgataacagg cgaaataaat gcaaaaaaaa attcggtgaa aaaaaaattc ctgtcgtcag 3780 gtgtggcgca tgcgtcgcaa acactttttt cttaaagaga atggacagga atgggaaaag 3840 accgtgaaga ttgagcctcc tcggttgaca aaagttttcg ctgctaataa cgagccaatg 3900 accatgactt cgttgatcac agtagaaacg tcactgcagt caagaactcg agaaattgca 3960 ttccatctga ctaatgtaga acgggatact ataatcttgg gagcggatca gtttgaggaa 4020 atgggaatac aaatgagcat cgactcctac ccgcgaaaca tctggctgtg cagagatgtg 4080 aaaattaagc ggattcccaa ctcattgtgc cggtgcagat tgaaggtgtt gtaaagcaag 4140 aagagagtta ctgtttaatg tcgccgaggg tgcaatggct agctccgtca gtgtgtcaag 4200 ctaacagtga aggaaaagcc ttagagaatc ttttcaacag ttcaagcaca ccacttgaat 4260 tgaagaaagg agatgttatt gctgtgggag agttggaagg gttcgacgtg gtcggtgata 4320 aagcagagca tatggaagat gaagcgttag atgaatacat caattcattg gggtttcatg 4380 aacaggaaaa tgccattagc ataaatgaga tcagtgtgac agggaatgat aggttgaagg 4440 tgatatgtga gcaattaaag aaaggagaag tgacgccaga agaggaaaga gtgtggaaag 4500 tggttgaaga gtttcaagac acatttgcaa tcgacgactg cgaattagga aaggcagaag 4560 tcgtgcaatg tgaaatcgag ctgaaagagg gaacagagcc aatacggcaa cgtccacgcc 4620 caatcccatt agcaattcgt cctgaaatca aagagatgat caggaaaatg ctaaaacaag 4680 gagttattcg cgaaagcaga tcgccttggt cctgcccagt tgtacttgtg aagaaaaaag 4740 atggaacggt gcggatgtgc attgattaca gaagggtcaa taaagtagtc aagaacaatg 4800 cacatcccct ccctcacatt gaatccacgt tgcagtcttt agttgggaag aaaatatact 4860 cgactttgga ttgtctcgcg ggttattggc aaattccgct tgcagagggt tcaaaacaaa 4920 taacagcttt tgctatcggg agcgagttgt ttgagtggaa cgtgttgccc ttcggtctcg 4980 ttacctcacg agctgtcttt caagctacca tggaaatggt tgtggaagat ctcttgggaa 5040 aatgtgctta cgtctatgtt gatgatttgt tagtggcgag tgagacattg gaacagcatg 5100 ctgaggatct tcgagagatt ctcttgcggc tgcgtaagag tgggatgaga ttgaaggcaa 5160 agaagtgtca cattgctcga atggaggttg aataccttgg tcatatgaca acaccaggag 5220 gggtaaaaac ggaatacttg aaggtggaac gtatgttgaa ttacgaaaga cccaccgaca 5280 agaaaggcgt acactcattc attggattgt ttggtcacta tcggcgtttc atatggaact 5340 ttgcagcaat ggcatgccca ctgactccac taacttctag taagagagaa tgggtctggg 5400 gcgaagagca ggagactgca ttttaggatc taaagaaggc tctatgttcg gcgcctgtcc 5460 tgatacagcc tgatgtggag gcagcgatga cgggggaaaa tccatttctg atctacacag 5520 atgcatcaaa aaagggagtc ggagctgtgc tcgcgcaatt gggagaagat ggtgaacagc 5580 atcctatctt gttcatgtca aaagcactaa cacccgctga aactcgatac catgtgactg 5640 acctggaagc gttagccatc cttcaggcgc taaaacgatt caaggcgatc atttatggag 5700 cacaaatcat cgtttttact gatcacaaac cattgatgta cttgctcaaa ggatctccat 5760 tgtcagatag gcttctcagg tggtccctgg agttcatgga gtacaatatg aaagtagtct 5820 atgttgcggg aaaggctaat gcggttgccg atgcgttaag tagaggaggt tgtctcaaat 5880 tggaaattga tgatgcagaa acaactgatc tcattggttc cttagaggta gaagaagggg 5940 aagaaagtaa cgagttggaa gtagcgaaat ggttcgattg gctaaaggaa gaagagggtt 6000 ggagagaggt gattcagcta ttagaaagtg gtgtcagcgt gggaaaagtg aaagtggagg 6060 ggcagaagaa aaaaattctg gtgcagaatt atatgataat tggtggaagg ttgaagaata 6120 ttgagatgga agagaagaat agattggttg tgccggagag agaaaggctc aaactggtca 6180 cacaagcaca ttctggtcct ctgtcaggac acttcggaac tgacaaggta tggaagcagc 6240 tgaaaaaaga gttctattgg ccaacaatga gagcattcat cgagaagttt atcaaaggtt 6300 gcacgaagtg cttgtgcgta aatgatcgac ctcgattaac ggctccgttg catccttacg 6360 agaccacatc acctctcgag atcgtcgctt gtgatttgat agacgtggga ttatctacac 6420 taggaaatcg ttacattctt acgatgattg acttattcac aaaaattgct acagctgtac 6480 caattcagga caaatgtgca gaaactgtca tgagagcttt catcgaacgc tgggcgctgg 6540 gggaatgtag aatcccagag atgctattga ctgatcaagg aaaagagttt gctaatgacc 6600 acttcaaaaa gttcacgcaa atgatgggaa ttgaacatgt gatgactaag ggatacaata 6660 gcagagctaa tggggctgta gatcgttaac aaaacattga tgcatattat tgctaaaaag 6720 gcagcggtgc ctatggaatg ggatgcacag gttccatttg ctgtgtatgc atacaacaca 6780 acactacatg gaacaacaag agagtcgcca ttgttcttga tgaccggaaa ggatccaaag 6840 ggcccactcc aaatggccgg tgtggatgcc gatggcatta gctatgtgga tatagatgaa 6900 tacaaacatc taatgacaca ggaattgttg aaaattcaca aaatggcgcg taaaaatgca 6960 gaatgggagc ggggccggaa caagcatttg tttgatgaga aacttaaaac agaaatgcgg 7020 aagtatccac aaccaggaag cagagtattg attgaaatac catcggaaaa gttgggagcg 7080 cggtgtccta agttggtgaa caagtggagg ggtccttatc gggtaatctc ttgctctgag 7140 aattctgcca cagtgactcc aattttggga aaggataagg aaaaaaaata gtgcttgtga 7200 ttccgttcga cactatgaga gtggtgccag cagaaatgga aacggtgcct atagtgacag 7260 taaaggaaag aaccaacatg cgcgcggtag agacttatgg aaacttcgtt aatgagttaa 7320 aacaaacaga aaataaggtt gattgttttt tcagtgagct ctactcatgt cgatgtccca 7380 caatctgttg gttttggcca gcagatgcac ccaatctgaa gacgacatct cctacttaat 7440 tggtccgtct cgttcaactg gctcgtcaac ggaaggaggt gatgaaagcg aagaaagacg 7500 tggcaccaga ggcaacgtcg gatgtgtcgg gtagacctca tcaagatagg gcagagcaac 7560 ttcagtggga gcaggaagct atgctccttt cgcaaggacc gcatccagat tttaatggac 7620 ttcctgacta cgaagcctgc atgcgtttgt ctcggtgtcc ctcaatgatg ttagtggcaa 7680 caacactacc cggatggaaa gatgctttcg atttccaacg agcccagttt ctacagaagc 7740 attttagatc cgatctgttc aaaccaaaac tttttcattg tgtccgcttg ccgggagtcg 7800 ccgaaaagga agttccactg agtcagaagg tgttccaaat caactctaag caggaatatg 7860 tggatgcaga agggcccaag gaaatcagaa aggcgaagag tgttctgatg gtggtgcctt 7920 tcactacgga agagacggaa attgagtcat ggaatagata catccaaaaa gtcgattcta 7980 aggtggagat ttggctggtg ccatcaccca ggatggatct gaatgctgga agaatagtga 8040 catttgggaa tttgttgtct caaatgcaac gaggagacgg tggaccttta catgtattct 8100 cccctgatga tcagaataag gaacatcccc tgtggagcat tgcattcaac aagaatttcc 8160 gtgattactg gaggaacgtg aaggcgatag ccgatgccaa gaaactcagg tggcctggat 8220 tccatgtgga tgataaggtg gatcgcaagc cagaagatgc cgcaacggct tctaccagct 8280 cttcctcgcg aaaaatcgat cgcccgacct cttccaattg ccccagatat caactttata 8340 tcacaaccac aatgcagaag gctggaaaag gaagatatca gcatcaatag ccagcgtcaa 8400 cgagtccaat tcataattaa ataattttct cactaataat cttgttttgt taaagttgta 8460 ataatctttt gtcatcatcc ccacctagag actcatgtcg cacatcttag agattcctta 8520 gtgcccagtg ttactctatt ttcagtattt ttacacccct acccggctca ttatgaagtg 8580 tattgcttca atgagtgata tcttgcccct ttccctttac ctgtttgctg ttttatgcac 8640 ccgatccccc aaatcatctc ccttctccct ggtatgagtt tttcttgccc cactgcgtgc 8700 atctcttcaa attgcacaca ttcttattat ctcctctttg tccctttttt ctttttgctc 8760 attgtttttc ctgtgtgttg aggcaagcac tggtttgctc gttgcatgtg cggggactcg 8820 taaaaggacg gaga 8834 // ID HELITRON10_CB repbase; DNA; CBR; 1394 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000036; DNA; KW HELITRON class; HELITRON10_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1394 RA Pavlicek A. and Jurka J.; RT "HELITRON10_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 263-263 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 93% identical to the consensus. CC HELITRON10_CB is flanked by TC-CTGG termini and contains an CC imperfect palindrome in positions ~729-1180. Related to CC HELITRON4_CB and HELITRON9_CB. XX SQ Sequence 1394 BP; 489 A; 240 C; 233 G; 432 T; 0 other; tctttactat taacaatcac caaattctgt ctgtgtgtcc gtttgttccc ggttccacga 60 ccctagcgaa gtccccagta gaccgaaaat tctcaaattt tcacagatga tcagaaatag 120 cagcgagatg ttgcccgtct atttttcatt ttgaaatttt gtttctgacg tcatctggag 180 acgttactcc attcctacag tgcaactctt tagaaaatta ttttcacgtc acttccgtcc 240 aacccctcta ttttttttct tatccacact atatctgata aaaaggtgat tttgtgaaaa 300 taattattta gtcttagttt tgaaagaaga gagaaagaaa aagttcagta aactttaaaa 360 ttctgacttt ctgaatcccc taacttctca aaaactgaat ttcggagatt ctgattcacg 420 aaatttgatt atttttttcg aaaatgcgaa atttctaacc attcctatgc ttcaaacatt 480 ttggtttcac tctgaaattc taaaattcta attcagaaat tcggaaaatt ggaaaaacgg 540 gaactcgaaa ataccgagat ttgaaacttc ggaaattttg aagtttgaaa atcagagaat 600 tcaaatgtcc aatgtttcgg aaattcagaa gtataaaaat tcagatattc ggaatattac 660 gaaattaaaa aatttgaaag ttagaacact cgaaattttg aaaatccaaa atctcgaaag 720 caaaaaacca gaaaaaccag aaactcagaa gttcagaata tcagaaagcc caagttcgga 780 atttagaaaa ttcggaaatt cataaacttt gtgaatcaaa aactcagaaa tgtgttttag 840 agaaaattct gaaaatctga ttcgtgttaa aatttttaat tttgggaatt tgtgaagtag 900 aatctcagaa agtcggaaat acggaaactc gaaaatacga aatttcagaa attatgagtt 960 ctgaaatgaa gtattttaat agaaaaatct ttgagttcta gaatcgcagt tccgaaaatt 1020 caggactcct gaatttcgaa acttctgaaa aaattataag ttgtcaaatt tcaagatatt 1080 cgggaattca gaaaaattat tagttctaaa aatttggaaa ttttgaacag ttcgtgtatc 1140 aactaagaca catttctgat ctacatttct gatttatctg tccaagccca aactcaatcg 1200 gttaaggctg ttgtaagcgg gagccagaag gtttagcccc gaaggcgcat aagcagactg 1260 tcactccagt ttatgaaagt tgacaacaca atcaactaaa acttcctctt ctgattctct 1320 ccgatttgga gattcaaacg tttttagtga agccaggaga ttgtagccgc cgacaggcgg 1380 cggaaatcga ctgg 1394 // ID HELITRON7_CB repbase; DNA; CBR; 1381 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000337; DNA; KW HELITRON class; HELITRON7_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-483 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1381 RA Pavlicek A. and Jurka J.; RT "HELITRON7_CB - a family of nonautonomous HELITRON transposons."; RL Repbase Reports 4(10), 274-274 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC HELITRON6_CB is flanked by TC-CTGG termini and inserts between CC 5'T and 3'A. Distantly related to HELITRONY1_CE from C. elegans. CC The central part contains a minisatellite array. CC MINISAT2_CB seems to be derived from HELITRON6_CB. XX SQ Sequence 1381 BP; 556 A; 228 C; 214 G; 383 T; 0 other; tctacttctt actaaggaaa cttttctgtg tgtgtgtctg tgtgtccgtc tcggacattt 60 acttgaataa ctcaaagggg catgggactc ctatagtggt gtgtggtatg tagtcatgga 120 ctgccgagcg cttcatgtct atggtgtact gggccttcta gctaataggg aagctacagt 180 gttgagaatc gaaaatttca aaattatgct caaactcaat aaaacttcac gaaattttgc 240 aaaacggttt tttggcctat ctatgtgttg cctgcataaa attgagcaca aatcttcaga 300 actgaaaaat tttgaaaatt tcgttttttt tgtatatcac ttgaatttcg atcctgtgga 360 ctactgaaaa tgggtcatag tagttttctt ttgaatacaa ggttcttaag ttatgcagaa 420 aattctagaa cattccagaa aattccagaa aattccagaa cattctagaa aattcagaaa 480 aattccagaa aatccagaac attctagaaa attccaaaac attccagaaa aaattccaga 540 aaattccaga aaattctaga aaattccaga aaattccaga aaattctaga acattctaga 600 aaattccaga aaattctaga aaattccaga aaattctaga aaattccaga aatccagaac 660 attctagaaa attccagaaa attccagaaa attccagaac attctagaaa attccagaaa 720 attctagaaa aatccagaac attctagaaa attccagaaa gttctagaaa attccagaaa 780 attccagaaa ttttagaaag ttccaaaaaa ttccagaaaa ttccagaaga ttctagaaaa 840 ttcgaaagtt ccagaacatt ctagaaaatt aaactagaaa aatccagaaa tttccagaac 900 attctagaaa gtccagaaca ttttagaaat tccaaaacat tgaaaattct ataaaattat 960 tttagaatag tcttgaaaat tctagaacat tccagaaaat tccaaaaaat tccagaaagg 1020 tcgaacgttc tctataaaat attactataa tttctctata ttttcaatgt gatctaaaac 1080 caaaggctta gaaataggct gggttaaata tctaaatttc agaaaaccaa acaatctgaa 1140 aaataatcag aaaatccaga aacattctag aaaaaatagg aattaataca tgtgggcatc 1200 tattcgagaa agtacggtat tcaaaaattc cgatatcagg aaaatataac ttttgaaaat 1260 aaaaaaactc ggaaatttcg gacacacgga aagtggaaat tctagaatta ggaattcaaa 1320 tgtaagataa agtaaacaaa ccaggaggtt gagcccccgg cagggggctc aaaccgactg 1380 g 1381 // ID DIRS-1_CB repbase; DNA; CBR; 4357 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 02-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; Cb000377; KW DIRS-1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 292-3501 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-4357 RA Pavlicek A. and Jurka J.; RT "DIRS-1_CB - a family of LTR retrotransposons."; RL Repbase Reports 5(4), 82-82 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. The consensus is derived from three full-length CC sequences. It contains two open reading frames and thus some CC members can be autonomous. Related to PAT, DIRS1, and DIRS1_DR. XX FH Key Location/Qualifiers FT CDS 296..940 FT /product="DIRS1_CB_ORF1" FT /note="putative Gag protein" FT /translation="MADAINKAALKEFGEEILGKVAELINVGVDKKKKEKE FT VEEEKPPKVSSKGIQKNIDFNFKIKNVLSKAMAADDLENGVKEVLELIKSR FT NGELLLLDSDPNLLQTKEKLDALKAISGGDSEGSSTQADMTSILLLSNLTG FT IAGNKSGGYHGDVKRRRQDPLPSRQQWFRSEGVFRGQGNTRQNGGQGYGGR FT DGKRSIRCYKCQGYGHYANDCEQRR" FT CDS 840..2876 FT /product="DIRS1_CB_ORF2" FT /note="putative pol polyprotein, reverse FT transcriptase" FT /translation="MEAKVMEAETAREASAATNAKDMGTMPMIVNNEGKCF FT PERLSEAIEFWESICNVEWVLSVIEDGYKIQLNSETILPEPQGLRPSVKRH FT EEFLIAEIKRLEEEGVVVRVEEEPRCVSPLHVVEQGKKKRMILDLSELNES FT LVPPRFKLENLKTAWPFLENAKFAATFDFKSGYHHIKIHRDSRDLLGFSLS FT NPPAAPYFLFKGLPFGLSIAPWLFTKIFKVLVQKWRAEGIKIFLYLDDGLV FT VGETEREVARAVRKVREDLHNAGVCVAEEKSFWVPDAKFTWLGYECDLVAK FT EVRGTEKRMATWWSALDELRRSLAPTVLDRMKFLGCLASFELVAGDIGVAK FT ARWMMQVVGENQKKKSESKLARKKKSPGEEKEIEFWRARGAELLRRNLLEV FT ESKPDFFLYTDASARGIGGLLKNERQDILWKMTEIGDGNFEKQSSAWRELT FT AVEVASARISSNLKGRVQVLVDSQAAVSVLRRGSMKPELHSLAERVWHNLE FT NVGESSFLWIPREKNVEADEASRNFDFDDWGIAERVFSQAQRMWGEIKVDW FT FADANNKKTELYFSRYPEFGTSGVNVFEHVERAERMGLPWLVPPPVLIPQL FT IKIMRRRRLRGVLVAPLWKSHISYQALVDYSGRFIREVKDYIIYEKNDCIF FT IPGEGSRHCEATNSKFCRSDFILAFLDFTQ" XX SQ Sequence 4357 BP; 1298 A; 743 C; 1180 G; 1129 T; 7 other; aatattatgt ttttcgttga agaacggaga aagaggcgcg cgagagttaa aggcgcatag 60 actttcggcg gcttgtggtc tcgcaacgat cacgaccgcc gggcgtgaaa acggagtttt 120 caaaccattc tacgcaattt taacgaggtc gtagcctgtt tttcgtgttt tttttgagng 180 ttttttattt tttnctgttt gtttaattgt gtcgaaaacg gtaatagtga gataattagg 240 ttctttatcc gtcaattttc actaatatat tgtttaggcg aaatcctgaa gaaaaatggc 300 tgatgctatc aataaagcag cgttgaagga gtttggagaa gaaattcttg gcaaggtagc 360 ggaactaatc aatgtaggag tggataagaa gaagaaagag aaagaagtgg aagaggagaa 420 gccgccaaaa gtttcgtcaa aagggatcca gaagaacatc gattttaatt tcaaaataaa 480 gaatgttttg agtaaagcga tggcagccga tgatctggag aatggagtga aagaggttct 540 ggagttaatc aagtctcgaa acggagagtt gttgttgctg gactcggatc cgaatttgct 600 acaaacgaaa gagaagttgg acgcgttgaa ggcgatttct ggaggagatt cggaaggatc 660 ttcgactcaa gccgatatga cgtcgattct gctcctgtct aaccttactg gaatcgctgg 720 aaataaaagt ggaggttatc atggagacgt aaaaagaaga agacaagatc cattgccaag 780 cagacaacag tggtttcgat cagagggtgt tttccgaggc cagggaaata ctcggcaaaa 840 tggaggccaa ggttatggag gcagagacgg caagagaagc atccgctgct acaaatgcca 900 aggatatggg cactatgcca atgattgtga acaacgaagg taagtgtttt ccggagagac 960 tttccgaagc cattgaattt tgggaaagca tttgtaatgt agaatgggtg ttgagtgtaa 1020 ttgaggatgg ttataaaatc cagctgaatt cagagacaat tttaccagaa ccacaaggcc 1080 tcaggccgtc ggtaaaacga catgaagagt tcttgattgc agaaattaag cggttggagg 1140 aagaaggtgt cgtcgtcaga gttgaagaag agccgagatg tgtgtccccg ctccacgttg 1200 tggaacaagg taagaaaaag cggatgattt tggacttgag cgagcttaat gagagcctgg 1260 ttcctcctcg atttaaacta gagaatttga agacagcctg gccttttcta gaaaatgcga 1320 aatttgcggc cactttcgat ttcaaatcag gctatcatca tataaaaatt catcgcgatt 1380 caagagatct tctcggtttt tcgctgtcga accctcccgc cgccccatat tttttgttta 1440 agggtttacc ttttggtttg tcaattgccc cttggctttt cacaaaaatt tttaaagtct 1500 tagttcaaaa atggcgtgcg gagggtataa aaatcttttt atatcttgat gatggattag 1560 ttgtgggtga gacggagaga gaagtcgcga gagcagtgag aaaggtgaga gaagatctgc 1620 ataatgctgg tgtgtgtgtg gcagaagaaa agtcgttctg ggtgccagac gctaagttta 1680 cgtggcttgg ttatgaatgc gacctggtcg cgaaagaggt tcgtggaacc gagaagagaa 1740 tggccacgtg gtggtctgct cttgatgagt tgaggaggag cctggctcca acggttctgg 1800 accgtatgaa gtttttggga tgcctggcat catttgaact tgttgcaggt gacattggtg 1860 tggcgaaggc aagatggatg atgcaggtgg tcggcgaaaa ccagaagaag aagagcgagt 1920 cgaagttggc aaggaagaag aagtctccag gtgaggaaaa agagattgag ttctggagag 1980 cgagaggcgc agaactgttg agaagaaatt tattagaagt tgagtcaaag cccgactttt 2040 tcctgtatac cgatgcctct gcgcgtggta ttggaggctt gttaaagaat gagaggcagg 2100 atattttgtg gaaaatgaca gaaatcggcg acggaaactt tgaaaaacag tcgagcgctt 2160 ggagagagtt gaccgcggtc gaagtggctt cggcgagaat aagttcaaac ctgaaaggga 2220 gagttcaggt gttagtcgat agtcaggcag ctgtgagcgt gttgagaaga ggctccatga 2280 agccagagct gcattcttta gctgagagag tgtggcataa cttggagaac gtcggtgaga 2340 gctcgttttt gtggattccg agagagaaaa atgtagaagc ggacgaagcg agtagaaact 2400 ttgattttga tgactgggga atagctgagc gagtgtttag tcaagcgcag agaatgtggg 2460 gcgagataaa agtggactgg ttcgcagatg cgaataataa gaagacggaa ttgtattttt 2520 ctagatatcc cgagtttgga acgagcggag tcaacgtctt cgagcacgtc gagagagcag 2580 agcgaatggg acttccttgg ttagtacctc caccagtttt gatacctcag ttaataaaaa 2640 ttatgaggag aaggagattg agaggcgtgc tagttgcccc gttgtggaaa agtcatattt 2700 cttatcaggc gcttgtagat tattcaggga ggttcataag ggaagtaaaa gactatatta 2760 tctacgagaa aaacgattgt attttcattc ccggggaggg atctaggcat tgcgaggcta 2820 ctaactcaaa attttgtagg tccgatttta ttctagcatt tttagatttc actcaatagg 2880 ccccaggctt tgcacttgtt tctaccttat taattgaacg taaaacctat gtataatgaa 2940 cttgtaatat caaaaccctc tttcaaagtg atgaaacaga aaaacatatt ctcttggagc 3000 gtagaggaaa gagaatatta tgtttttcgt tgaagaacgg agaaagaggc gcgcgagagt 3060 taaaggcgca tagactttcg gcggcttgtg gtctcgcaac gatcacgacc gccgggcgtg 3120 aaaacggagt tttcaaacca ttctacgcaa ttttaacgag ggtcccagcc cgcccgcccg 3180 gggaagagga ataaagaagg gcaaaagagt ttataaacta attttcagaa ggccccaaaa 3240 aggattacat cgaagagatc gagagacaag cagggaaaga attccagacg cacctggaca 3300 agctcaaagc ggctccactg gaatctaagg cctcgtcgac tgctctggct tataaagcag 3360 agaacaagag gaggaaggat tggataattg agaagagact tccgttgaat gagtcttcct 3420 ttttgttgta tttggtcgat cgagcgaaag gaattggaag cagcgcnctg tcgaaaatat 3480 cggctgcata tcaagctgca atcttttcct ttcacgtcat gctgagagct tcggaagccg 3540 ccgagatcaa gtgggaagga gtgacgcaaa aagatgggat gattgaggta cacgtggaga 3600 aggccaagaa tgaccagtng agactaggac gatcatcgtt cttcaactat gatccaggaa 3660 gtgacgcgga tattctcatg tgtagatgga ggattcactc aagaggaaag tgnccgtacg 3720 ttttctcgaa tcttgatggn tcaaagaaan tgacgaaatc gtcgatctct gcactagcca 3780 ctaagatgcg gcaattggaa aatctggagc cacccatcac gctttccgga gaggaggagc 3840 gaatcacatg agggcgacag gatattcaat ggaggagatt caagcaagag ggagatggag 3900 atcgctggca ggtctacaac gatacatcaa ggatgtgccg agagcccaag gatgcctgca 3960 tccccaagag aacggaattg gagtcgagga ggacgacgaa gatttcgagt aataattatc 4020 cttttagttt attgttgatt aactagtgtt tgtgtttata ctaattcatc gatatcgttt 4080 cataccttta tcatgttcca tttatatcga ttctcaaacc ccttgttttt actagtagtt 4140 tttagtgttt gtttagacta atctttccat attcccgttt tcgacactcg gtggtcattt 4200 gctgaactca aagcatagcg ctgtcatgta atatcaccat catacgacct tattaattga 4260 acgtaaaacc tatgtataat gaacttgtaa tatcaaaacc ctctttcaaa gtgatgaaac 4320 agaaaaacat attctcttgg agcgtagagg aaagaga 4357 // ID MARINER34_CB repbase; DNA; CBR; 1292 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000356; DNA; KW MARINER34_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1292 RA Pavlicek A. and Jurka J.; RT "MARINER34_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC MARINER34_CB contains 25bp-long imperfect TIRs and is flanked CC by TA target duplications. Similar to MARINER13_CB, BMMAR3, CC and MARINER16_CB. XX SQ Sequence 1292 BP; 391 A; 274 C; 275 G; 352 T; 0 other; cagggtgggg aataattata gcgcccaaac tttgcgcaag ctctggcgcc agcaacacgg 60 tctgatttgc acaccctagt atttttttac cttcattttt ttgttttaaa ctatttctga 120 aaaattcatg caattatttc aactttgaag gtaatggtga ccgtttttcc ataccacact 180 cctagtatgg agcgcgcgaa aaaggggtga gaactttgga gatcgctaaa aaacttggta 240 tcaggaaatc agtggtcaat cagaaactcg ttcggttcag agaattggga actttcaata 300 atataagaaa aagcggtcat ctgatgtttg gaacggctcc tgaagtcgtc aaagccgtga 360 gagagaaaat cagtaggaat cacgaaagaa tcatgaaaaa aatgacgtcg tagtttagaa 420 tgctccgcaa atcaatgaga aatattttcc gaaaacagct ccatatgatt ccatatcgaa 480 cccaaaaagg cgctttccta acggaccgta acaaagggtt aaaactgaaa aaatccaaaa 540 atctccttcg aggcacgcgc ttcggcacgc acttgaagac cgttttttat agatgaagtt 600 gttcactgtt caggcaaaca agactgacca gaacaattga atcggggcta tcgattatta 660 tagtgcatgt aggagatgaa aaacccagaa taagacatct cacccggtca cggtgaccgt 720 atttggtgag atatgctcaa atggtaaaat tttgtcgatt gtggagccaa gatcaacaaa 780 aatcctacat cgaacgaatg ttgaagtcgg aggtgctgcc ccagtcccaa tcacgtcttg 840 tgaacgacaa ttgaccattc tatcagtacg gagtgcctgc acacactgca aagctcactc 900 gtcagtggtt ccaagccaat tttccggatt ttctcactaa ggatcgatgg tcagcttcca 960 gtccggtact caatccaacg aattttttgt tttgggaata ttggacccaa tgagtctcca 1020 caaaaaatta tcctaatttg gaagccctga atagatcctt gaccgcggca tgggacaatt 1080 tggacgtcaa ctacccccgt gccgtagtcg actccttctt gaagagactt cgagctgtta 1140 tcggagcgaa cggaggaagg ctcaaaaatt gttaatgcca tctttttttg ttatctctta 1200 atgaacatct tggccgaatt tgagaaaaaa atcttttggt ttgaggtttc tacactgtct 1260 tgaaagcggc gctatattta ttccccaccc tg 1292 // ID GYPSY5-LTR_CB repbase; DNA; CBR; 240 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; KW Cb000539; GYPSY5-I_CB; GYPSY5-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-240 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-240 RA Pavlicek A. and Jurka J.; RT "GYPSY5_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 234-234 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. The internal part is listed as GYPSY5-I_CB. CC LTRs are flanked by 5bp target duplications. Related to CC GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY18-I_AG. XX SQ Sequence 240 BP; 58 A; 59 C; 33 G; 90 T; 0 other; tgttacattc tacgcctatt cttataagtt gaatgtatta ttattatttg gtgacgtgaa 60 ctaccctggt tcactaaccc tttctatttc ctccacatat tacacgtgga tttcttgtct 120 cttgagaact cctaagttct caagatcagt ttctgtattg tccctgaata aagactttca 180 ttataaccac tctctaccct tcctgtgtct cctatcatgt ctggaccacg ggatacaaca 240 // ID HELITRON14_CB repbase; DNA; CBR; 1222 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000519; DNA; KW HELITRON class; HELITRON14_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-628 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1222 RA Pavlicek A. and Jurka J.; RT "HELITRON14_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 267-267 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 94% identical to the consensus. CC HELITRON14_CB is flanked by TC-CTGG termini. Related to CC HELITRON13_CB, HELITRON4_CB, HELITRON5_CB, and HELITRON11_CB. XX SQ Sequence 1222 BP; 385 A; 177 C; 210 G; 450 T; 0 other; tcattactaa taacaaacac caaattctgt ctgtgatgat gtgtgtcgcg tggcgtttca 60 cctactcaaa cttaaccgat tgagctggaa tttggatgga tggatcggaa atttttatta 120 gattatcccc gaccttttct attttcgaaa ttttgtctct gacgtcttct ggagacgttt 180 ttcttttttt ccagtacaaa tatttcataa aattattgaa gtaattttca cgtcatttcc 240 gtctaaccgc ccagtatttt tctcatccac gttagctttg aaaaagagga aaagtttgga 300 aaaatagttt tcagtatggg ttttgaagtt tgaagggaaa ggactggaat agctggaaaa 360 tgagaatgat gaagaaaatg tgctttcagg attctttgaa ttttctagac tttgaatttg 420 aaccttaatt ctctgaattt acgaatttgg caaaatataa attgttgaga ttatgaattt 480 aaaaaatttg tgttttaaaa aatttcggtt tttctaaaat ccggtcttcg aattccaaaa 540 atatgagtgt tttcgaattt ccgaatttct gaatttgaaa aagcaaaaaa ttttggaact 600 tcagaaattc tcaaacctta aactttggta aaacagaaat ttaagaattt aacagattgg 660 aaaaatagaa tctaatatag gtttaatagt attcaaattc agaaaatcga attcatgaat 720 ccctaagttt ctggatttcc gactttccaa atttctaatt tcgaatttca tgcatttctg 780 attatccgaa tatctctgtt tctatgattt ttacaatgct ttttactgca aactttagaa 840 tttctgaatt ttcgtaactt tgaattttgt taaatatcga aattccgaat tccgtagttc 900 gatactaaaa aattcgaatt ttttacaatt ccgaagttct gaatttccgg gcttcagatt 960 ttttgatttg aagaaatttc agaattattg aaccttcaaa tgaataacta catttccgaa 1020 atgaagaata tgagaatatc agtttgaaat ttgagaaaat gagggtgaga attgggaatt 1080 tcagaagttt tctttcggat gttgtttttg tttcatcaca gttccatagc ttatatttca 1140 agagtcaaaa tcttttccat ttgattccgg gtattgtaag ggagccagac ggtttagccc 1200 cgaaggggcg tgaaccgtct gg 1222 // ID MARINER13_CB repbase; DNA; CBR; 1303 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000107; DNA; KW MARINER13_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1303 RA Pavlicek A. and Jurka J.; RT "MARINER13_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC The central region harbors similarity to mariner transposases, CC however, no elements seems to contain an intact ORF. Distantly CC similar to BMMAR3 from Bombyx mori. MARINER13_CB contains CC perfect 26bp-long TIRs and is flanked by TA target CC duplications. XX SQ Sequence 1303 BP; 368 A; 312 C; 299 G; 324 T; 0 other; cagggtccgc caaaattacg tgtgcacaac tttgacgcca tggcgctgcg cactgacgca 60 cttttggtgc gcaatttttt aaaattttta ttaattattt cattatttat tagtttgcca 120 agtttcatcc caatcggtta tgttttaggt aaatgacagc ggcaagtcct catcgtactc 180 tgatcgtcga cttttacaag cgaggtttaa gcacaggaga catttctaaa cgactcggag 240 tgcaccgaaa cacggttttc gcgaccatcc gtcgtttcaa ccagcttggc cacctcaagg 300 accgtacggg aagaggaaga ccgaggactg taagaactcc agcgaaagtc aaggccgtcc 360 gggagaaagt caggcgaaat gctcatcgtt ccatgaaaaa gatgtcagat gacatggata 420 tctcctatac atcaatgagg agaattgtca gaaaagagct gaagatgacc tcttatcgag 480 caacaaaagc tgctattcta tcccaagcca ataaggagaa acggctcatc aaagcgaagc 540 gccttctcgc tggcacgcgc aaaaaggatc atcttatcac catcttctcg gacgagaaac 600 tcttcagtgt cgaggctgaa tttaatagcc aaaaccaccg agtgctggcc acaaatattc 660 aacaagcagc tgagcgtggt aaaacaatcc atcgagcctc tcatcctgcg agcatcatgg 720 ttttcggagc ggtttgctat gatgggaagt gtccgcttgt tttcgttgat aaaggcgtga 780 aaatcaacca aaaatactac gttgaggaga ttctggagaa gcatgtgcta ccgtgggctc 840 aaaaccactt cggtcagaag aaatacatct tccagcaaga tggagcgcct gctcataccg 900 caaaaatggc tcaacagtgg tgcaaggacc acttccccgc cttcatacca aaggacgaat 960 ggccggcttc gtcgcctgat ctgaacccgc tcgactactc cgtatgggga gttctgcaga 1020 ataaggtctg cgcaagacct catgcaaata tcgaggccct gaagaagtcg ttgtctgagg 1080 aatgggacaa attatccgtc gaatacctgc gtgccaccat tgatgccttc cctcgacgac 1140 ttcgtgccgt ggtcgctgcc aaaggaggta gaatcgaata atttttgttg aattatgatt 1200 tcaagcgttg aaataaacta tctgttaaat ttcgtcttaa tctcgcatct acttctggag 1260 ataacgtcat ctacacttgc acacgtaatt ttggcggacc ctg 1303 // ID GYPSY4-I_CB repbase; DNA; CBR; 3367 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 4bp TSDs; KW Cb000510; GYPSY4-I_CB; GYPSY4-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-835 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-3367 RA Pavlicek A. and Jurka J.; RT "GYPSY4_CB - a family of nonautonomous LTR retrotransposons."; RL Repbase Reports 4(9), 231-231 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus CC and flanked by 4bp target duplications. GYPSY4-LTR_CB is 76% CC similar CC to GYPSY3-LTR_CB. GYPSY4-I_CB thus appears to be a nonautonomous CC family related to GYPSY3_CB. XX SQ Sequence 3367 BP; 967 A; 742 C; 605 G; 1053 T; 0 other; tctccgtcca ttttcgagtc cccgtacgtg gcaagagtga aaatggtgat tgcctcagct 60 caatgattaa agggcacaaa atcacaatta atgaaaacat gggatgggta gacgggacct 120 agaaaactta aaagaataac aactacttaa aactcatatg ggtggggtat gggatggcaa 180 gaaaatatag aatttaatga ataagaaact ggggtaatta ggaaataaga gatatatggg 240 ggaaacattt ggcaagattg ttacaatcat aagattttag aaaattaacg aaatttagtg 300 aaggtgatgg ctgtaggtgt acttggctca tcagtgcaca tcaataacga aattggacca 360 tgaatccgtg attgaaccat agtgactttg tgacatgttg tggtggtggt gctcttgaca 420 tggcggatct ttccttggtc ggaaatcctg atgcaggtga acttcacgtt gctgcggttg 480 ggactcaaat tctctggtat catctgggtg catttggggt ggatccttcc ttggtcgaaa 540 ctcttggtgt aagcgggctt tcaatttatc ctggatatga ctagtatcct tcgaatgaca 600 tagttgtggt tgtggtggat ccttacgtgg acgaaatcct ggtgtaggag aacttgtgcc 660 tcatccagat tgacttggga atcacttgta tcttcatgct tcagtaacgg tggatccttc 720 cgtgggcacg gttcctcctg aattcggcga ttggtctttg tctgaaaacc aaagccacag 780 gcacccttcc ggcctttttg ggtctgtttt tcaatgtggc tttcccagaa gtcaaatgga 840 tctttggtgt acaaaaacca ttttgttctc aattatcaaa tttgaagaac tcgacagtaa 900 tctcatcggg ggaccttgac ttttccaaca gtcgttagct ttcttgttct gtacattgct 960 ttcttccttc tcctttgaat ttcctgaggc aggttctatc atgatctctg atacagttat 1020 ttgttcttcg atgactgtta gagtttctaa tacagaaatt ctttcatgaa actgctcttt 1080 tagatccata ctggccagaa tatcaaattt ttcgatcgca ctttgaaaac ctatttcttt 1140 gctctgggca ttctcctgac tttgatacac ttcaacattt cgagaccttc attgatctct 1200 cctctcatgc acttttcatt tgactgttta gtctctgtga ctaaaaatct ccttgaaatc 1260 cttgatatta tcctgtgtgc tttttgtgcg gcatctctga aactcatcag ctgttgaccc 1320 cctacacaac acgactttcg aatcctccac atttccttct gtagattctc tttaatatcc 1380 gtacacaaga ttcatctact ttgtcctcag tagattcttt caaaatcatt gtatcaaatt 1440 cactttgtcc attatcaaga aaccattttc tactttgtga tcacaaactt ctttttctgt 1500 tcttacacca attagaacta tcttcgcaac ttctgattca gatatctgta actcaacttg 1560 tgaaggattt ttcttttcaa tatgttcgaa cgaattgaca ttgttctcag aagatccacg 1620 ctacttcttt ccttttccga tacaatctgt ttttgttcag actcttggct tactttcatt 1680 ttgcgaaatt ttgaacgagc accttctagc tgtttgaaca gcttcctgtt tttcatcttg 1740 agataatcaa attccttttg gactgctcac actttcagtt tgatcatacg ctcttttcct 1800 cgcgcactct aactgtacag tattatcctc taacagcgaa atcagatcta gtcttctttg 1860 ttgtgcagcc ttccattctt cttcaagttc ttcaactgac cttaatccat tatccagcat 1920 ccactcacaa atcttcatta cgaaatttgg aattcgtttc ctgccctctc gttcttcttg 1980 ccatgacaca cgaatgcgtt tcacaacatc gtcgtgatcg gcaacctgct tgaaagagtc 2040 attgtctttt tctttgatca aactgattaa aggcaataac atactataag ctccgtttcc 2100 tgacaacttt gtgaattttt gaagattctg aatagtctgc tgaactgcgt tctggttttc 2160 aaaattgcat ttttgcatca ttttccccaa tttttgttcc agaaaatcat tttcactcgc 2220 agaatatgct gacgaatcct ttgaagagaa gttaccatgt attccatcat catcaagcac 2280 gaaacccttc gaaaccgaca tttctactgt aggaacacga tgaaatttgt ttccgaacga 2340 atacagattc tgaagactag ggaattagcc aagacgaaga aaactagttc tagtcgacga 2400 atgacagcag acagcgaaat tctatggaaa attccgagct ctgacacaaa tttgaacaat 2460 ttgatacaaa aatgactgat tttcagacga aaagtcagtt ttcggcacca aattccacga 2520 attcttgttg aaaagctagc aattcttctt tgaaacactt tcttcttctc aattcttctt 2580 ttgacacaaa attccagtcc gaaaatcgat aaaatcgaat aatttcccaa tttttgactt 2640 gaaaaaacgg aaaattcgac gaaaactcgc ggaaatctta ctgagaactt gacaataatc 2700 ctagaattcc cgacagaagc cttcctcgac aactttcagc aagcaagtta cgatttttgc 2760 ccgaaaacac gaaattcatc aatttctcac acaaaaatct tttgaaaacc agtgaaatcc 2820 tctcagaatc cacaattgtc tctccgaata cttgcacact cctttgacaa ccaattgaaa 2880 attgattcgg caatttttcg caggaattat cgatttttcg acgaaaaatc gacttatagc 2940 acttcctcag tcggaaatcc ttccaaaact cggcagttct tctcacagac gatagcgaat 3000 cgttcaccac ttccttccac ttgctcgaaa cgttgattcc agtactatgt cctccgatcc 3060 ttagctaatc gagctaattt cactcccaca aactgagaaa agtggctaga agctgccggt 3120 gcccggacag aacgccttct caatttacaa gagatcgaaa atcgcagaga atatggcaag 3180 aagctgccgg tggccggaca gaacgccttc tcagtgaaaa tcgataaaaa cggcaaagaa 3240 acgggtgaaa acgacaaaga gactgataga aacgaagcaa acaagagcaa agaagcgata 3300 gaacgtaatc aagtagaaga ttcacacaaa agaccgaaaa agtcccggaa aaagccttcg 3360 gccccca 3367 // ID HELITRON9B_CB repbase; DNA; CBR; 1569 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000036; DNA; KW HELITRON class; HELITRON9B_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1569 RA Pavlicek A. and Jurka J.; RT "HELITRON9B_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 277-277 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. HELITRON9B_CB is flanked by TC-CTGG termini CC and inserts between 5'T and 3'A. Shares termini with CC HELITRON9A_CB, HELITRON9C_CB, and HELITRON9D_CB. CC Related to HELITRON3_CB. XX SQ Sequence 1569 BP; 551 A; 269 C; 243 G; 506 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg gttccgggac 60 cctagcgaag tcaccactgg accaaaattt cccaaatttt cacagataac ccgaaatagc 120 agcgagatga tgcccgtcta ttttgatttg tgaaattttg cttctgacgt cttctggaga 180 cgttcttcta tttctacagt acgtcttcag aaattatatt tacgtcattc ccgctcaact 240 ccactatttt tttcttatcc acgttatatc agacaaaaag atgattttgt gcgaatattg 300 gttcagtctg agttctgaag atttgaaagg aagaaaaaat tatgataaga aatctgagaa 360 aaagacaagc tcccttaaag atcaatacaa acgcgtttaa tgtagtcttt gaatttctta 420 ggctttaagt tttaagaaat caaaatattt cgaactttaa gaaatcaaaa tctttcagtg 480 gttttgaatt tccaaacttt gcaaattttt taaatgctga aactatagaa acctggatct 540 ttgaaataat aagtttccaa attccaaaat gttaaaatgt gtaaattttc ggattcccaa 600 tttctgagta ctcgagcact tcaatttcca aatatttgat tacctgaatt tctgagtttt 660 tgaatttcgg aaaatcctaa tttcgaaatt cggaaattca aaaaatctca aatatttatc 720 attttgaaaa taacaacaaa ttaggaattc atgaatgctg aaatgcagaa aattcgcgaa 780 attcgagaat tctgaagttc agaaaggcag aatctcaaaa aaaatcagaa acccagaaat 840 tcagaaatta agagtctcaa aaactaaaat ttcttaaagg gggactccga ccaaaaattt 900 ttattgcatt aaaatgtttc aaaaaatatg tatgttccta atatcatggc gaaaaatttc 960 gaaaaaaatc ctaaatcccc gaaaaacggc gttgaaaaaa caactttttt tgaaaatttt 1020 cgcttttaac ggtatttttc ggggatttcg gatatttttc aaattttttc gctataatat 1080 tgggaaaata gacaactttt cgaacatttt aatgcaataa aaaattttgg tcggagtccc 1140 cctttaagtt aagttcttgc atttcagaaa atccaaattt ggtaattcgg aaattcgaaa 1200 aaccgaaaat caaaacttca gaatctcaaa aaaaatcaga aattcagaat ttcagaactt 1260 cagaaactca gaaatttgga atttcaaaaa atcagaattt ctgaatcatg aatccctcaa 1320 tgtcaaaatt tctggattgc cgaatttctg atttcttgaa attctgaatt tctgaacttc 1380 cgaattactc aatttctgaa ctactgaatt tctgaacttc ccaactttca aaatttctta 1440 attttcaaat ttgtgagcat aggccctaaa aaatagcctc cgtaaaagtg acggaacctt 1500 tttataagat tgcgggtatc gtaagcgagg gccaggaggt ttagccccga aggggcgtaa 1560 accgactgg 1569 // ID DNA2-6_CB repbase; DNA; CBR; 324 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000049; KW DNA; DNA2-6_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-324 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-324 RA Pavlicek A. and Jurka J.; RT "DNA2-6_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 83% identical to the consensus. CC DNA2-6_CB contains ~60bp long TIRs and is flanked by TA target CC duplications. XX SQ Sequence 324 BP; 93 A; 57 C; 64 G; 110 T; 0 other; ttatgctggt ataaaaaaat cggagctgtg gaagagaaaa tctggtggcc gcggccacgg 60 ccgaactacc gtaattagca aatatttttt aatttttatt ttttttctcg attttcgtcc 120 gttttccggc aattttttag atttagaaaa attttatttt ccgacttgtt tggaggtttt 180 caacacaaaa gttgtcgaaa agcaatagta atcgagaaaa aaggaccgaa aattttaggt 240 tacggtggtt ttcgttacgg gaaccgttgg ccacgcccac aagcttttct cttccacagc 300 tccgattttt ttatacaaga ataa 324 // ID MuDR-14_CB repbase; DNA; CBR; 375 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 03-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000355; MuDR-14_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 73-342 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-375 RA Pavlicek A. and Jurka J.; RT "MuDR-14_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 88-88 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 88% identical to the consensus. MuDR-14_CB CC contains 11 bp-long TIRs, flanked by 8 bp target duplications. CC TIRs are similar to MuDR-12A_CB, MuDR-13_CB, and MuDR-11_CB. XX SQ Sequence 375 BP; 90 A; 92 C; 95 G; 98 T; 0 other; catacttgtc actggccggg ccgggccggg tcaaaatgaa aaattctccg gcccggcccg 60 gccagcccac cccccggccc tgtcggcccg ggtcagattc taaaatttca aaatttcgaa 120 gtttttttga aaatttgtga agttttcatc aaaatttcta taaattttga agtttcgata 180 cttttataag ggcggattat accaggaagt tgtttttcag gtggaattca aaaaattttt 240 ctcaaaattt ttcaaaaaat cagctacccg ggccgaccgg gcgggccgga agaatttttt 300 tctgacccgg cccggcccgg caggatgggc cggccgggcc gggtcaccgg gtcggcccgg 360 aatttgacaa gtatg 375 // ID MARINER25_CB repbase; DNA; CBR; 1494 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000221; DNA; KW MARINER25_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1494 RA Pavlicek A. and Jurka J.; RT "MARINER25_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC MARINER25_CB has a palindromic structure and is flanked by CC 2bp target duplications. Translated similarity to MARINER15_CB, CC MARINER14_CB, Tc3 and Tc6. XX SQ Sequence 1494 BP; 521 A; 229 C; 239 G; 502 T; 3 other; tatatactgc tccacataaa tatacgttca cccattaaaa atggcgaaaa acccaaattt 60 gcagtttcta aaaaatatcg accgaaggtt agaaagatta cgatatgaaa gacttttggg 120 acccagagca aatttcaaat gagaatgagc aatattttta ttttcatttt ttcaattttt 180 tgacttttgc ggttccacat aaatatacgt tcacccccat tttttaccat gtttcagcac 240 catactctta aattttaaac tttttgtatt ncctttgact attcaaacaa tgcgatgtaa 300 aaaattacta actaatttaa aaagtcaaat taaaactaaa aatgcacaaa actttttaga 360 ctgtcatatt gtcagaatan aggaagaacc tnagacattg taaatagatt tgtcaagaat 420 tcgtcaagaa cttttctgta cttcatcctt tccttacaat ccaaaaaaaa tgtcaaattt 480 tataaaaagc gaatattgtt ataaattatt tcaaaatcaa taatcgtgaa gctataatta 540 gacaatttga ttttttaact aaaaaagcaa aatcatcaat tattaaaaga agaagcactt 600 atgctgacaa atgattgaaa ttgcttcctc tgacattgca tctctaaaat caaagtttat 660 cttttataca aattatgaca ataaaagttc atcacagtta atattttttt tgacaaaaaa 720 aataataact gtgatgaaac atttaggaaa gttgtcgtaa tttgtataaa agataaacat 780 taattttcga gacgcaatgt cagaggaggt aaatgcgagc aaactccaga cgtttttggg 840 gatggattga tgtcagcata agtgcttctt tcatcttttg ataattgatg aacttgcttt 900 tctggatgac acgtcaaact gtctcattcg atacagtaag cttcaaacga ctcttgattt 960 tggaacaact ggtcacaaca ttgagcgctt ttcataggat ttgacgtttt tctcggactg 1020 taaggagaga atgacgtccg gaaaagttct ttgtaccgta atttaacgaa ttcttgacaa 1080 atcgattgac cacgtctgag gatcttccta aattctgagc aatctgacag tctgaaaagt 1140 tttgggcatt tttggctgta atttgacctt ttttgaaatc agttagtggt tttttacgtc 1200 acatcgtttg aacagtcgaa gggaatacaa aaagtttaaa atttaagagt atggtgctga 1260 aacagtagaa aaaatggggg tgaacgtata tttatgtgga accgcaaaag tcaaaaaatt 1320 gaaaaaatga aaataaaaat attgctcatt ctcatttgga atttgctctg ggtcccaaaa 1380 gtctttcata tcgtactctt tttaacctcc ggtcgatatt ttttagaaac tgcaaatttg 1440 ggtttttcgc catttttcat gggtgaaagg tatatttatg tggagcagta tata 1494 // ID MERLIN5_CB repbase; DNA; CBR; 436 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Cb000238; DNA; KW MERLIN5_CB; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-436 RA Pavlicek A. and Jurka J.; RT "MERLIN5_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(6), 185-185 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MERLIN5_CB contains 135bp-long TIRs and is flanked by 9bp CC target duplications. Distantly similar to Merlin1_CB, MERLIN2_CB CC and MERLIN4_CB, but they all are flanked by 8bp target CC duplications. XX SQ Sequence 436 BP; 138 A; 69 C; 70 G; 159 T; 0 other; ggcaaatact cattagcttg atgatctttt gctaaatgct cacttgctaa atatgctcat 60 ttgctaaact cgctcatttg ctaaaatagt ctcacttgct aaatttcatt tgctaaattt 120 tgatcatttg ctaaaaatga aaaagtggaa attttgctgt tatttgctaa tttcagtact 180 ttttgactga atttttttac agaatattcc ggtttttgct ttaaatttta ggcttaggct 240 taaacacctg ttttccggta aggagtttca gcctaagcct tcaatttgaa caaatcctct 300 atttagcaaa tgatcaaaat ttagcaaatg aaatttagca agtgagacta ttttagcaaa 360 tgagcgagtt tagcaaatga gcatatttag caagtgagca tttagcaaaa gatcatcaag 420 ctaatgagta tttgcc 436 // ID MARINER35_CB repbase; DNA; CBR; 274 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000357; DNA; KW MARINER35_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-274 RA Pavlicek A. and Jurka J.; RT "MARINER35_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 89% identical to the consensus. CC MARINER35_CB contains 25bp-long imperfect repeats and is flanked CC by TA target duplications. Similar to MARINER11_CB and CC MARINER23_CB. XX SQ Sequence 274 BP; 86 A; 51 C; 56 G; 81 T; 0 other; ccgtatttcc tctaattgaa gcccatgggc ttctattttt caacctcctt ttcaggaaat 60 taccaaaaac tgaaattacc agaaattttt ttgaaataga aagaaaatgt ctacaataac 120 cgaatagacg aactgaactg ttcaaactgc actaactgaa ctgcacgaac ttctgttaga 180 ggatgcgctt ctatgttttt aagcacgtca gagggtgggc ttctattaga ggtgggcttc 240 aaatagaggt gggcttctat tagaggaaat acgg 274 // ID DNA2-10_CB repbase; DNA; CBR; 1355 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000093; KW DNA; DNA2-10_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1355 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1355 RA Pavlicek A. and Jurka J.; RT "DNA2-10_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC DNA2-10_CB contains ~30bp-long imperfect TIRs and is flanked by CC 2bp target CC duplications. XX SQ Sequence 1355 BP; 417 A; 263 C; 224 G; 451 T; 0 other; ctcggctgtc ggcgccaata cttggccaga cctcccacaa gtctagcaca agtctccgag 60 cacattattc tatgtattag ctaagacttg tgggaggctt gtgcaagact tgtggaaggc 120 ttgtcctaga cttgtgtgtg gctttgtgtg ttttcattga aacctgttgt tctgttgtga 180 ttgtatttgg aattagaata tactacaaca ttttattaga acactacaca aaacgaataa 240 tgaaaaaaaa attaattaaa atcacaaaaa atttccacct tttcgtttcc ttttctttga 300 aatccgttga aattcatcga caatgacagt gtaatcgcat caagtcgagt catctcattt 360 cctcaatttt tgctttgtat tttgaagtat cctttagacg agaacattac gatccaattt 420 cttgcatctg aaatacaaac gataatttta aaaattctca gtctttgaac taataccatc 480 acttcctttt cgaaaaattt tcacagttct ggtttcgaca ttactgactt tcggataaca 540 agcatctaca taatgtgcag tgcaaataaa ttcttcttta catagttcga gttgtcttca 600 aatcctaaaa aacgttactc ctgtgagttc caaacattgt tttttactga aatcgtgttc 660 attttccact gcgacactct gcgcatgcac gattttgacg aaactctgaa tcgttttcat 720 agcattttca aactccttga aaaatgtgtg ataccttcaa aaagagatcc tttgtcgact 780 gaaacagcag ttttgatgca gaattttttg gtggaatttt gcagaaaatt aacttttttc 840 atcttccgtc tcctcttttt tcgtgaatcg aaattctgta tattcaagtg ttcgaattct 900 gtaatattga actcttcaaa cctaaatatc tcttcataat aactcacgat atgctcacga 960 tgtgctcacg actcgcagat ttatcctttt tcggttttgc ttttttgagt tgaagttgaa 1020 tgttctgtca tgttgaaagt tataccattc gaaacttcaa aatttcttat accaaaaaca 1080 ttaaaatacc ttcataaaaa ttcaaacctt tatgaaaata gtagaaaaat aggtaaaacc 1140 agaaaacaaa ttgaaaatta aatgatgagt ccgaaggtaa aaaatcaata atcagaattt 1200 ggccaagact tgtagccttc cgactatggg ccaagacttg tggaagccat cacaacggct 1260 catggaggcg catactttgg ccaagacttg tgggaggctt ggccaacact tgtaaaatca 1320 tgaaatttgg ccaagtattg gcacccgcag ccgag 1355 // ID MARINER38C_CB repbase; DNA; CBR; 1509 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000436; DNA; KW MARINER38C_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1509 RA Pavlicek A. and Jurka J.; RT "MARINER38C_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(8), 210-210 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER38C_CB contains ~380bp-long TIRs and is flanked by TA CC target duplications. TIRs similar to MARINER38A_CB and CC MARINER38B_CB. XX SQ Sequence 1509 BP; 468 A; 311 C; 303 G; 427 T; 0 other; cagtactcca caaaagttta attccaccct cagtttgtac tgaaacacct atttaggtca 60 atattcgtga aaaggtgtca acatgaaaaa taaaggtctc ccttcaaaac ctaagtacga 120 aaaatttgga gccatcaacg tgacccggaa aagagaaacc ggaaaaaatc cgaaaatcac 180 gttttggccg atccacaaaa gtttaattcc actctgaaaa agtgagattt tggaagtttt 240 taagctctgc gaccaccttt tgaaggcctg aatttgaaga attttaagat tctgaccccc 300 atacacggag accattatac acggttactg atatccggat tccggatgtc agatatccgg 360 atttccggat tcaaaatttc agatatccgg atttccggat tccggaatca ggattccgga 420 ttcaaaattc cggattccgg attagcttcc tgaatgagtt aaagtgtccc gggaatctga 480 atatcaggtt tccttgacaa acaagcgttt cagaaagttt ctggaaagtt acgaaagctt 540 ctgaggttct gagggattct gaagggacct ggaattctgg gagattctcc agaatcatga 600 gaaacggcac agtagattgc gttcccgaaa acaaaaaact cgtgaagttc acagatgaag 660 gcgtgatggc aagaacgaca atctcgtcgg caggtccaat caaacagttt tttgtttcga 720 agaagatgaa cggatcctat caaattattc tctcggaatt tcgccttttt ggagtagaaa 780 catgaattgg tatatcgtct tcatgcacgt ttcagaggtc atggtagtta gaacgcaatc 840 tactgggccg tttctcatga tcctggagaa tctcccaaaa ttacaggtcc cttcagaatc 900 cctcagaacc tcagaagctt tcgtaacttt ccagaaactt tctgaaacgc ttgtttgtca 960 agaaaacctg aaattcagat tctcgggaca ttttaactca ttcaaaaagc taatccggaa 1020 accggaatcc atcatccgga atccggaaca cagaatccgg agtacatatt ctaaatccac 1080 tacacacaat tcagtaaaca taatccagaa cccaaaaaaa ccggaatccg gaattttgaa 1140 cccggaaatc ctgattccgg aatccggaaa tccggatatc agtaaccgtg tataatggtc 1200 tctgtgtata tgtatgagaa tcttaaaatt tttcaaattc aggccttcaa aaggtggtcg 1260 caaagcttaa aaacctccaa aatctcactt tttcagagtg gaattaaact tttgtggatc 1320 ggccaaaacg tgatttttgg aatttttccg gtttctcttt tccgggtcac gttgatggct 1380 ccaagctttt cgtacgtagg ttttgaaggg agacttttat ttttcatgtt gacacctttt 1440 cacgaatatt gacctaaata ggtgtttcag tacaaactga gggtggaatt aaatttttgt 1500 ggagtactg 1509 // ID DNA2-8_CB repbase; DNA; CBR; 2046 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000081; KW DNA; DNA2-8_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1518-2045 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2046 RA Pavlicek A. and Jurka J.; RT "DNA2-8_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(4), 168-168 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC DNA2-8_CB contains ~30bp long imperfect TIRs and is flanked by CC 2bp-long target CC duplications. XX SQ Sequence 2046 BP; 643 A; 412 C; 376 G; 615 T; 0 other; cacaggtaga gggggactgc cgaaaaacgg gccgttctgg cgggcgcgga ctgccgaaaa 60 gcgaacagtc ggcagtcgaa tcgcgcgccg ccgacggtcc gtctgtaacg atttgcgcct 120 cgaagacgga ccgtctataa tgatagcgcc ttcttgacag ttcatcatta aacaggtaat 180 aaacaataga aattcttttt attaaactaa tagtttctgt ggattgtgta ttgtatttta 240 aaaagtaact ctgatttttt caaagttgaa tttttatgag tagaacaaga gaaaacacat 300 aagaaatcac aagttctgaa tgagacagaa cttccgattt tctttctgtg ttttcgcaaa 360 attcaaactt catagaaact caactcggaa aatcagaagc tttttttatc gttcctttcg 420 ttctctttct cttcttcgtt tctccctttc aacttttttt tcgtttttcg gttatgtaca 480 tttctctcat tgaacagtat ttttcgctta taagtaactt tcgttcaaaa taagtaaaat 540 tgatgcgttc gcaacatgaa ttgagcaccc actaaaaact ggcatgtaaa aaatctttag 600 atttttaagc ctctgcggca tttttaaagc agacttcaaa agggcgacgt ttcgcatgtg 660 aaatttaaaa aacgagtcag aaacagcaaa aacaactgat tttcgtatta attttcatgt 720 gcgaaccttg caaagttgtt actttccaaa cattgcactt gcaaaacgtc acacctatga 780 agtatcggcg aggtgaattt tcgacaacag catgaacaat ttcagagttt acgatagttt 840 ttgcttcgga acgtataaaa acttaccaac tcaccatata aaaactcctg aaaggctgca 900 tttgtaacgt tccgaagcaa aaaatagcga aactttcgaa actttcatcg caaggagttt 960 tcgccgattt tttctgcgtt ttcaactaaa aacgcgcaga gcgaaagtgc gcaaagcttt 1020 tcagtgcttc tttaatgcca gtagttagat aaattaagcg aaaaatactg aatttcaata 1080 agagaacact tcgaaaagcg aaagaaacct gtgaaaaaaa gacgaaaaat tagtaaagtc 1140 ttgtgccgct aaacaaggcg cagccgggat ttcggagtgt cgttgcggga tttcggagtg 1200 tcgttgcaaa tctctatgac cgaaattttg aaactcggca gttataaaac ggcaattaaa 1260 aacgaattgt tgagattttt gaagaaaaac gaacaaaaag agaatagcac tttcagacaa 1320 aaattgtaca aaattttcag aaaaaaattt cgtcggaaat cttcagaaaa ttgaaaaagt 1380 atgaccgaga acatgtgtcc tgaacgattg attattatca tgcaatgaca actcgagtaa 1440 agatcttgga acacgaaaat gctaaaacat gcttttagat ggataccaag gaatattcaa 1500 aaatacattt tacagcgttt ttattcagcc gccatcaacc agtcagcgcc tattcgactg 1560 tcatttagca gtttttcacc aaccgcgcct caaatcctaa ttttcgtaga aatgcttcta 1620 ataacacatt ttatagattc ccagatccct ctatgacttt tatgatgttt taagagaaaa 1680 ctattttttc aacaaaattt tccattctga agaaatttgg accgccaacc accggtcatt 1740 gaccagtcag cgcctcttcg actgtcattc agcagtcgtt caacaaccta ttttttgagg 1800 tggtcctatt tgaggaaaat aagattctat caatttccta taatctagtg ggagtatgag 1860 aaattgtttt ctgcatgatt tccaatcaga accttcaagt atgttttcca atgggtaccg 1920 actgtccgtc gacggaccgt cgacggcccg tcagttctcc ttcggctgcc aactagcagt 1980 cattcgccag tttgcgcctc ttcagctgtc atttagcagt ttttcagcag tcccccttta 2040 cctgtg 2046 // ID HELITRON9D_CB repbase; DNA; CBR; 1580 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000167; DNA; KW HELITRON class; HELITRON9D_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1580 RA Pavlicek A. and Jurka J.; RT "HELITRON9D_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 279-279 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. HELITRON9D_CB is flanked by TC-CTGG termini CC and inserts between 5'T and 3'A. CC Shares termini with HELITRON9A_CB, HELITRON9B_CB, HELITRON9C_CB. CC Related to HELITRON3_CB. XX SQ Sequence 1580 BP; 549 A; 272 C; 233 G; 526 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg gttctgagac 60 cgtagcgaac tcaccactgg accaaaattt cccaaatttt cacagatgac ccgaaatagc 120 agcgagatga tgcccgtcta ttttaaattt cgatattcga tttttgacgt cttctggata 180 tgatcttcta cttctacagt gcaaatcttt agaaattatt ttcacgccat tcccgcccat 240 ccccctattt tttcctatcc agttatatca aacaaaaaga tgattttgtg cgaagagaca 300 ttcagtctgg gttctgaaga tttgaaagta tctaaaaatt atgataagaa atcagagaaa 360 aatacaagct ccctcaaaga tcaatacgaa cgcgttcaat gtagtctttg aacttcttag 420 gctttaagtt ttaagaaatt aaaatctttc gaatttcgaa ggttttgaat tcccaaattt 480 tccaaatttt ttaaatgctg aaactataga aacctggatt ttagaactat aaatttccaa 540 attccaaaag attaaaatgt gtgaattttc ggatcgaaaa attcaaaatt ttaaaatttt 600 aaaaataacc gcaaatcaga aattcctgaa aattcgcaaa atcggaaact gaagatcaga 660 aaggcagaat ctcaaaaaaa aatcagaaac ccagaaattc agaaattaag agtctcaaaa 720 aactaaaatt tctgagatta aattcttgaa tttcagtcct aatttggtaa ttcggaaatt 780 caaaaatcaa aaatcaaaac ttcaaaaaaa tcagaatttc agaatttcaa aacttcagaa 840 actcagaaat taggaaattc gaaaatcaga atttctgaat catgaatccc tgaattttca 900 aatttgtgaa ctgctgaatt tctgaacctc tgaacttctt ttgaaaaatt taaaaacttc 960 caaactccta agtttctctg aaattttgag tttttgaact ttttcaattc tgaactcatg 1020 aaattcgatt tttagatttt ttttcgaaat tttgttccca aaatttttag tcgctgtttt 1080 gaagtgaaac gattttctgg atttcaaatt ttaagagcta aaaaatttcc gatcttaatt 1140 atgaatggct ttataggcta tattcctgaa tttgccaaaa atttgcaaaa ttggttttga 1200 gatttcagaa gttccagatt tgtagaattt ctgaatttca gaattttcga acttctaaat 1260 ttgcgaattt gagagttaca gaagttttgt tagacttatt tccttcatca caatgtctaa 1320 gcttatatgc attaaaaact gacttttcga attctcaaaa attcaaatct cctcatatcc 1380 gagatgttaa attccgaaac taccgagatc ctgagtttcc aaaaaatcat tttttaaact 1440 caaaatttcc taattttcga atttgtgagc ataggcccta aaaaatagcc cctgtaaaag 1500 tgacggactc tctttattag attacgggta ttgtaagcgg ggccaggagg tttagccccg 1560 aaggggcgta aaccgactgg 1580 // ID Mirage1_CB repbase; DNA; CBR; 5748 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 27-MAY-2011 (Rel. 16.05, Last updated, Version 4) XX DE Mirage1_CB is a DNA transposon that belongs to the Mirage DE superfamily. XX KW EnSpm; DNA transposon; Transposable Element; transposase; KW Mirage group; Mirage superfamily; 2-bp TSDs; Mirage1_CB. XX NM Mirage1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-5748 RA Kapitonov V.V. and Jurka J.; RT "Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis RT briggsae genome."; RL Repbase Reports 4(6), 186-186 (2004). XX DR [1] (Consensus) XX CC Mirage1_CB is an autonomous DNA transposon that belongs to the CC Mirage superfamily detected previously in the C. elegans genome. CC The consensus sequences was reconstructed from several 99% CC identical copies. It contains 15-bp terminal inverted repeats and CC it encodes the 1039-aa Mirage1_CBp transposase. This transposon CC is characterized by 2-bp target site duplications. MirageN1a_CB CC and MirageN1b_CB are nonautonomous transposons whose autonomous CC counterparts were relatives of Mirage1_CB. CC Since its originall discovery in 1999, Mirage transposase was not CC significantly similar to transposases from other superfamilies. CC However, a massive explossion of the number of protein sequences CC annotated in GenBank in 2008-2009 resulted in the PSI-BLAST CC convergence of Mirage transposase sequences with transposases CC from the En/Spm superfamily. Therefore, Mirage transposons should CC be viewed as a distant (nematode-specific) group of En/Spm CC transposons. XX FH Key Location/Qualifiers FT CDS join(420..482,536..685,858..917,1046..1294, FT 1338..1514,1518..1562,1605..1868,1904..2320, FT 2364..3101,3295..3558,3607..3744,3788..4030, FT 4083..4277,4366..4476) FT /product="Mirage1_CBp" FT /note="transposase." FT /translation="MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVK FT EMATLEDTSNVDFEMELEDMDKDEDTDEDDGGQTEFERLLTSQEDTFAEEA FT RKLNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRKQLKEGKNIVHNL FT NSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSSE FT MQKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGITYDCKIT FT TCCADQPAKRSFFGMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNLTV FT LDSKNGENGFSSKSSKVVEVIAPYNTPIDILHNTGEGLFDRIRKAIPLFPE FT IFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIENLRNGSDKTHVG FT DCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSNTQ FT APTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLLST FT FSFESFYQFSLCGYSTSITRFFLQNACTKFVHYFHFINPQPFNKFRFLLHT FT SLRREIVRRSKPLGTESLKRFLSLTPDLGSSHVTWDGRIRDVQKIDKENIP FT IESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTCFRFVAAVVTTS FT LVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGLVE FT GSLSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPSTSS FT SSRLFVDENQRKHARGTDYTRGNLYTATVNQKWSPIGFAATQLYDMETGSA FT FDRETCERNIEKMIKNDRDIDYMEWLNLASKCREEGKDLLEKFSLGMATQT FT ALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEELELPSRKTFRL FT SDILTENVVCNWTSTQFDAHTKRLALHVWDAVVDNADELLVCYGSSQKENK FT YVPVNPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVRA FT RYNAKFGKSQSEQAAIWLHDELMKGEASELKS" XX SQ Sequence 5748 BP; 1790 A; 1076 C; 1146 G; 1735 T; 1 other; cacaggtgat tcgcgacttg tctatcacga agctttatcc ataccgcatt tgatttcaga 60 ccaatcgcga aaacacagag ttcataatag acctatcgcg aacgccttcg cgataggtcc 120 tataatagac ctataataga cctataatag acctatcgcg aaaaccgcct gccggtgtgt 180 tttttatttc tttaaattct ttctggttct attttatatt tttctgattt ttattgaaat 240 ttttaagtgt attattttat ggtgagtgag ttaactactt ttttattgct ggaaaatgca 300 aatttctatt caattttcat cgagaaaatt gaatatcgat aactagtaca gtaagatgta 360 gctctagtgg tgaaactata aagataatgt gtgaaggata aactttatca gattaaatca 420 tgcctcgtac gacacataag gaagttcgac catttcatgg aatgggaagc aatgatacaa 480 gtaagattaa ttgttgtcca tcatcattgc atcattgtac aacgaacttt caggcagtca 540 ggaaagaagg gttggtgaag atgatgttcc gtatgcagtc aaagagatgg caacactcga 600 agatacttcc aatgtagatt ttgaaatgga attagaagat atggataagg atgaggacac 660 ggatgaggat gacggggggc agacaggtat tatgctagaa cttagagatt cactgtcctg 720 gtttagattt gaacagaatg atagaagaag tttcgacgcc cgtattgttg ttcgtaacat 780 ctaattgtat cagtagattg tcgaatagag gtaaatgata ggaaacttat gaaaacaagt 840 agtttttttc gcattcagaa ttcgaacgac ttttaactag tcaagaggat acttttgcgg 900 aagaggcgcg gaaattatgg tatcattaca aaagtaattt ttcatgccac aactactgta 960 acgcatgtgg tgagggactt ttgtcttcgc acgagaaatg gtaacggata tgtataagtg 1020 actgagcatt tctccctttt acagtaataa atgcgtcgac agtgctactg caacgttcgt 1080 ccgtattggt agcagatccc aattaaaaga attggtggaa ctatatattg ataagatcat 1140 ggaaatcagg aaacaactga aagaagggaa aaatatcgtt cataatttga atagcccctt 1200 tttctctaaa tattggaaag cagaacttca gaatcacttg aatctttcca ctgttatttc 1260 aattgatgga attcagattt cgggtaacaa aaagtagtaa tttttcactt aacctcggat 1320 caataatgca gttcaggaaa ttatggcctg ttagccttgt tttggtggat ttgccgtcta 1380 gcgagatgca gaaatcgtgc aacctgattc tagaaggagc agtcgaatgt agtgaaaatc 1440 catcaacttt actgtggaat gctatatttg gaaagatccg ttctgatgta gaagctcaca 1500 ctggcagagt tggaawcatt acttacgatt gcaaaatcac tacgtgttgt gcagatcagc 1560 cggtgcacta atatctccta gtttatcaat catcagtttt ttaggcgaaa agatccttct 1620 ttggtatgaa aggacattca tctagtatgt cttgtttcta ctgtctgagc gaagaaacac 1680 tgtacaagcg gggtggtgta agccgaaaag aacaacgata cggaaatctg actgtgttgg 1740 attccaaaaa cggagaaaat ggattctcat cgaaaagttc taaagttgta gaggtcattg 1800 caccttacaa tactccgatt gacattttgc acaataccgg agaaggactt tttgatcgta 1860 ttcggaaagg tatacactaa taatattcca gtatagtact gtagcgatac ctctatttcc 1920 agaaatcttt cctccagata caaaatttat ccgaaagtca gacttattcg tcattgatcc 1980 cagctcattc gcgcgtgata ttcgtcgagt atacttgcat tccaattacg agaacattga 2040 aaaccttcgc aacggctcag ataaaactca tgtaggagac tgcaaaatta cagtacaaaa 2100 ttttcgtttt cagcacctcc gtctcacgct tgctctgaca gccctagtat cagattcaat 2160 gaaaccaaag gctagactag ttctaatagc cttaggattt ctgacaaata agatgtacag 2220 taatacgcaa gctccaacat tgttcgatat tcagctgtcg gccgctgcag cttggtattt 2280 ggcggaagct aataaggagt atatcacaat gaaaacccac gtaagcagat agtggtattt 2340 atgaagtatt aagttgcatt caggaacttt tgtatcatct agcagatgtg aacaaacttt 2400 ttggaaacac cgggttatta tctacattca gctttgagag cttctatcag ttttcattat 2460 gtggttacag tacttccatc acacgtttct tccttcaaaa tgcatgcaca aagttcgtcc 2520 attattttca ttttatcaat cctcaaccct ttaataagtt taggttcctc ctacatacaa 2580 gtttgagaag agaaatcgtc aggcgttcga aacctctggg aaccgagtct ctcaaacgtt 2640 ttttatcgtt aacaccggat ttgggaagta gccatgtgac atgggatggg agaatccgag 2700 atgtgcaaaa gattgataaa gaaaacattc cgattgaatc ggttttgtat tctaccatgt 2760 atttgcctct tggatcttta atttccgagt atagctcccc tcaaacaaac aacgatattg 2820 tttttgcgag ctgtaaggga cgtaagacgt gttttcgatt tgttgcagca gtggttacga 2880 cgagccttgt aggagcgtta gtggagccga tcgaggctgt ttctgaagat cgaaaactga 2940 tggatttacg gaaaattcgc aattccttat caaacgcaga tttttattac tactcggaaa 3000 tggttaatca gttgataaat tatgaaggac tagtcgaggg ttctctttct gggcgccgag 3060 aagttattcc tgtagactcg attctaggtg tcgcttgtta tgttagtact gaatcttcta 3120 gtatttttgt gcaggccaac ggcgcctaca ttcataattg aaaagatgaa ttttaattta 3180 agctaagttg aatttttact ctcgattgtt atatatgaca tttttctccg ttaattttca 3240 atgaacttct caatcggaaa aaatatcgaa tggggataga ttttaaattt ttaggcaatg 3300 cattatctaa cacccaatag atcatcaaga ccagctcctt accggctccc tttgactaca 3360 agaacaagcc catctacatc ttcttcttct cgattgtttg ttgatgagaa tcagaggaaa 3420 catgctcgtg gaactgacta cactcgtgga aacttgtata cagccacagt gaaccagaaa 3480 tggtccccaa taggattcgc agctacacag ttgtatgata tggagaccgg aagtgcattt 3540 gaccgggaaa catgtgaagt gagcaattct gtagaactat taaaataaca taacctctat 3600 ttttagcgca acatcgaaaa aatgatcaag aatgacagag acatcgacta catggagtgg 3660 ctcaatttgg caagcaaatg tcgagaagaa gggaaagatc ttcttgaaaa gttctcgctg 3720 ggaatggcca ctcagacggc actggtaatt cgaaacagca gttcaaaaca aaatcttgtc 3780 ttttaagagc aatgccagaa atcgtcgtgc cccccgagaa acgaaaacag tatccaattt 3840 agttggaaat atcgaaaaaa gaggcttctc cttggattca gcaaaatgct tcgacgaaga 3900 attagaatta ccgagtcgaa aaacatttcg attgtcggat attctcacag aaaatgtagt 3960 atgcaattgg acttcaactc aatttgacgc tcatacgaaa cgcttggctc ttcacgtctg 4020 ggatgcagtc agtttgaaat tagaaccttg cagtaatact aacgatcaga ttgctcttgc 4080 aggttgataa tgccgacgag cttttggttt gctatgggtc ttctcaaaag gaaaacaaat 4140 atgttcctgt caacccttcg attttcacga aaatgagcgg taagattact aatcaatacg 4200 ttatcaagtc agcgcatact cagactacat catcgcgggt tttggtcaaa cgaacagcca 4260 agaccgaaaa acccaagtaa tttcctatct tcaatcttca ctcgagaata aattgtgagt 4320 ttgtccaagt tttcagctaa aatacctcat ctacctatat tcagaaatag agtgagagcc 4380 cgatacaacg cgaaatttgg aaaatcccaa agtgagcaag cagcgatttg gctacatgat 4440 gaactaatga agggagaggc atcagaattg aaatcgtgag tttttaaatt caaaaaatta 4500 ccactcttcc gctcagtcgc acttcaaaaa atggagaaat cgtaaagaaa aatcgaggca 4560 tcgccatttt catccaaaat aacctcacgt tggtttcatc ctagaagact ccgcgaccaa 4620 tagtgcgggc ttctgaaaat ttaagcggag agtacctata tattcggcaa ttgcacacta 4680 accgcgtttc ttcggtgata taaatcgatt tctcgtccca aaatcttaaa ttccatccgt 4740 aattagcaga aatttgtgct cagaattcga tttcatccgt tttaaacatg gctccgtttt 4800 cttctcgatt ataatactct tatataatga cggtgtttcc tgaaaattcg tgcggcgagt 4860 accttgaatt ctaataaaat taactaaccg ttcaatccaa caattctgat catagtgagt 4920 cgcgaatagt cgtaacagag tgcattggct gacttttgtt aacaaataaa atgagatgta 4980 cgcaaatgcg cgtcacggtg tcggcagact gggcagtcga gtcgtcgacc gtacctcgca 5040 gttgccaaaa cgtaggaaaa ttgaaaataa gtccgtcgct tattagaaat agttccgaat 5100 tcatcaaaga gaaaaagaga caaaaaacga tatgtttcta acaacaaaac aaaaagccca 5160 ataaacacat taaggaaaaa cgaattatgg gtcatcggct gacgaaaaac taatttcaat 5220 attttcgttc tattgtttct tccaattttt cttttcagac atcccctgaa cttcaattcg 5280 agcaatgtta gtggcgaaga cgctcccaac ttcagcggaa tcccaattac gacggatctg 5340 gagacgatgt cgacgacagc attgatattg aaggctgcta atgtattttg gagtttaagg 5400 aagttttctt ttcccatcac attgttaaat tgttctttat ttgttgcttt tttgttattg 5460 aataaacatc gttattattc taattcctta tttcgcatcg aatatttttt ttttaatatt 5520 tgcgataggt ctattatgga tagagttttc gcgataggtc tattgtaggt ttcggaacaa 5580 gcctattatg agtaaaatcg tcctcaattg gtctacaata ggtctattgc agaagtttgt 5640 tcgcgatagg cctattattg gtctataata ggcttcgtgc catgtaccca aatcacctac 5700 gcgcgaacca tttttcacct ataatagatc ttgcgcgaat cacctgtg 5748 // ID MERLIN2_CB repbase; DNA; CBR; 610 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Cb000053; DNA; KW MERLIN2_CB; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-610 RA Pavlicek A. and Jurka J.; RT "MERLIN2_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(4), 116-116 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 90-98% identical to the consensus. CC MERLIN2_CB contains ~168bp-long TIRs and is flanked by 8bp-long CC target duplications. Distantly related to Merlin1_CB. XX SQ Sequence 610 BP; 218 A; 105 C; 99 G; 188 T; 0 other; ggcaattact ctttgactac accactcttt gactacacct actctttgac tccacattct 60 ctttgactac aaagtctctt tgactacatt tatctctttg actacacttg tctctttgac 120 tacaaagtct ctttgactac actttttaaa attttaaaat tttctgcagt ttttgtgggc 180 gttctcacag aatataagaa gaatttgagc ctaagcctat aattttaaac aaaaaactga 240 caattccaaa aatacatcac agtgaaaaaa gtactgaaat tcgcgaaaat cagcaaaatt 300 ctcacttttt ttcgctgaga tttccaaaat tttattattt tctgtacaaa tcaaaggctt 360 aggctgaaac ggttaccgga aaactggtgt tttagcctaa gcctataatt tgagacaaaa 420 atcggaaact ccaataaatt cagtcaaaaa gtactataaa acaaaaaagt gtagtcaaag 480 agactttgta gtcaaagaga caagtgtagt caaagagata aatgtagtca aagagatttt 540 gtagtcaaag agaatgtgga gtcaaagagt aggtgtagtc aaagagtggt gtagtcaaag 600 agtaattgcc 610 // ID MARINER44B_CB repbase; DNA; CBR; 275 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000318; DNA; KW MARINER44B_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-275 RA Pavlicek A. and Jurka J.; RT "MARINER44B_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(9), 239-239 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC Contains 104bp-long TIRs, flanked by TA target duplications. CC MARINER44B_CB was probably mobilized by MARINER44_CB. XX SQ Sequence 275 BP; 66 A; 69 C; 74 G; 66 T; 0 other; ttgtcggaat aaaaaaagtg agactcggtg tttgcgtact ttgattcccg cctcccccca 60 ccgacgctcc gcccatcgct ttgcaagtgc ggcgtggtgt tttggcgcta cttgggagat 120 catcggattt aatgagattt tcatagaaaa tatgatctcc aagtggcgcg ccaaaacacc 180 acgccgcact tgcaaagcga tgggcggagc gtcggtgggg ggaggcggga atcaaagtac 240 gcaaacaccg agtctcactt tttttattcc gacaa 275 // ID MARINER8_CB repbase; DNA; CBR; 1981 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000056; DNA; KW MARINER8_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1981 RA Pavlicek A. and Jurka J.; RT "MARINER8_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 91% identical to the consensus. CC Distantly similar to Tc3, Tc1-1_AG, and other autonomous CC mariner/Tc1-like transposons. MARINER8_CB is flanked by TA CC target site duplications and contains ~270bp-long TIRs. XX SQ Sequence 1981 BP; 595 A; 404 C; 356 G; 626 T; 0 other; cagtgcgttg caggttctta cgtccaccca tgtttagggt cataacttga gagctgttag 60 aggtatcggt ctaatttttt gaaaatcgga ttcgagacaa caaattaaat ctagtggaca 120 atttttgtaa tgaaaccttg aaaactaccc gagttatctg gaaaagtctg aaaatatgcc 180 ttttgcaacc gttgcaagtt tatacgtcca ctccaaagat cagtagatca cgacctccag 240 cgaagacgga ggtgtccaat tttttgattc ctgtacaact aaaatcactg taaaaagttt 300 gttttcatta cgtgtttctc tttctttgag tttgtatcat gtcatgggat cttttgccga 360 ctgatgctgg aaaagcttca atcggggcag ttggagcagc tggatggacc aaaaagctat 420 cagaaagcaa ctaaatcatt cacactgtca tatcgactgt tttctcatcc gaaaattaac 480 gaaaaaaaac aggatcagct caaatcctgc cctcaagatc ccaaccctct accagtactg 540 tcgttttaaa ctctttgaag tcgtgtaatg gtatcaacca ggagctgaaa cttgaagtca 600 tcaagtggac gggttagaga tgtctcaaag atgatccagg catcaaaaga gcaatcatgg 660 tcccagctcc gacacctacc gacgatcaca aagtacgttg tctcaacttc tttcaaaagt 720 gcatcggatc caactggggg aaggtgttaa agtttaacat gatctaccaa aataacctta 780 gcatgaatgt ttttcacatt ctaaaaaagt atctgacaaa attatcaccg tttataccac 840 taacatttta ttagttgaca aattttcgag tatcttttat aggaaccgag ataattgccc 900 aataaataaa acaacagatg gtgcgccttc ggcgcgattc aacctagttt ttactcgttc 960 gtccttagtt tttcactttt ttaatgggtt acgtaaatct actttcaatt ttcgagtttt 1020 tttaaacttt tcacacgtta cgcaataaac ctttaaatca atcaatatta ggtcacgccc 1080 cctacctctg tccacgttga aaaaattcca cgtattgaaa aaaaaacagt cctttgggaa 1140 atcccacttt ttgaattagt ttgataattt tcactagcac tttttgactg ccctgaagct 1200 ccctgcgtaa gctgtttatt gtttcatttg cttttttctt tcgattggtc ggatgcgaaa 1260 aaagttacaa aaggccctca gggtcgccat gtttggtggt tcatggctag gtgaattcat 1320 tttcactgaa cgtccccctt ttgcaaaaga ctcaatcaaa gaaaaaagaa acaaaatgaa 1380 caaaaacaat aaatagcgat cgtatagctt tttagcagtg aaaaagaact attgaaaatt 1440 agaaaactgt ctcctcggag acaggggttt tgtgttggtg ttttccccca gtgaaaaccc 1500 attttccctt tcatgtactg agcctctacg tggcgaaagg gatcaacaga cgaaagtctg 1560 gctaatcagt acacttttga aacttgtcat ttttcataat ttttgttgat atgttcagga 1620 atatctatat ttgaaatttt ttttttcaat aaatcctttt tttacatctt ccatttcatt 1680 tttctctttt ccaagcccgt ttccaagaag gaagaatcaa aattggacac ctccgtcttc 1740 gctggaggtc gtgatctact gatctttgga gtggacgtat aaacttgcaa cggttgcaaa 1800 aggcatattt tcagactttt ccagataact cgggtagttt tcaaggtttc attacaaaaa 1860 ttgtccacta gatttaattt gttgtcccga atccgatttt caaaaaatta ggccgatacc 1920 tctaacagct ctcaagttat gaccctaaac atgggtggac gtaagaacct gcaacgcact 1980 g 1981 // ID MUDR-9_CB repbase; DNA; CBR; 296 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 03-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000412; MUDR-9_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 10-274 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 162-192 (2003). XX RN [2] RP 1-296 RA Pavlicek A. and Jurka J.; RT "MuDR-9_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 91-91 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 81% identical to the consensus. CC MUDR-9_CB contains 11 bp-long TIRs and CA-TG termini. Flanked by CC 8 bp-long target duplications. XX SQ Sequence 296 BP; 79 A; 58 C; 49 G; 110 T; 0 other; catacttgca aaatttcggg ccggcccgct gtttgtacag acgctgattt tttttaaatt 60 ttttttcgaa aattttagaa attttttcaa aaatttaaac aaaaactacc tattttttga 120 ctactttcta ctttgttaat tttgataaat aatgtaaccc tttttttctt ttttaattca 180 aaaaaaatta cccaattttt cattggaaat tttttttact gtgaaaggcg gggccgggcc 240 gggccgagaa aattgtcgtc taccggcccg gcccggcccg gcccgttgca actatg 296 // ID MARINER26_CB repbase; DNA; CBR; 1252 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000236; DNA; KW MARINER26_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1252 RA Pavlicek A. and Jurka J.; RT "MARINER26_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 89% identical to the consensus. CC MARINER26_CB contains 34bp-long TIRs and is flanked by TA CC target duplications. Similar to MARINER12_CB, MARINER5_CB, CC MARINER_TF, MARINER3_CE, MARINER18_CB, HSMAR1 and MARINER24_CB. XX SQ Sequence 1252 BP; 364 A; 260 C; 253 G; 375 T; 0 other; ttaggttgtt ccgaaagtct tttacatttt ttgagcacgc attttataca ttcttgccga 60 tcgattttcg ttttcttttt ttttgtttta ataatcttca actcatgttc aataaaaatt 120 gtcagtttgt ttcaaaaaat ctcagtccat ggccgagagc ctcgccaaca aaacccatga 180 tgtttgaggt tgccttcttt tcgagtttct caaaggagaa tccgctgccg ctgctcatcg 240 atctatatgc tccgtaattg gtgacaagtc acttgagtat cttgtagtgc gaccttggtt 300 caatcgcttt tggaacggcg aatattcgct caaagacaaa cctcaatttg ataacctatt 360 ttcaagtatc gatgccgata tctagaaagc gctggaagct gagccgagac tcactgttcg 420 tgaagtttct tctactctcg gtcaacctac tacaattgca tttcatcatc tttgaagttc 480 cggacacaga gaaaaatatg gtcaactggt gccacaccat ttcagtgatt cccagattaa 540 aactagttgt gacttgagtt ggtctttgct cactcgtaag cgaaccttcg atgggatcca 600 ttatcttgtg tcaggaaacg ataaagggtg tctgtaggtt aaagaaaaca gaaagcgtca 660 gtgggtcaag gtttgccaaa ctccagaaat caatcacaaa ggagaaattc gtgaaaaaag 720 ggagatgttg agcatttggt ggaattttga cgtgtgatct ttagagagat ttctcccaat 780 tgtgcgatcg ttacaacgga catgtactgt ctccaactgc aaaaagtatt caatgcgtat 840 cgtgctctgc gcccagaagc ggacacattt gttctgcttc acgataatgc gcacctgcac 900 acgactttgg ccactcgcca aaaaatgcag ggtctaggta tcaaaatact cggttatcca 960 tcatatagtc cagacctcgc tctaacagaa ttttatttac tgagctcgct ttagaatggt 1020 taacagggta aacgcttcga tagaagatcg gacctcaaat cgtatatgga tgccttcttc 1080 gtgcagcaac cacccgagtt ctacgcgaga ggcatcaaac atctaccaaa acgttggcag 1140 gatgtgatgg accataataa acaatatatt acttgctgaa atattttgaa cgttgaataa 1200 agttttgttg aaaaaatgtc aaaaaatgta aaagactttc ggaacaacct aa 1252 // ID MARINER28_CB repbase; DNA; CBR; 1957 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000281; DNA; KW MARINER28_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1957 RA Pavlicek A. and Jurka J.; RT "MARINER28_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC MARINER28_CB contains 31bp-long imperfect TIRs and is flanked by CC 2bp target duplications. Similar to MARINER7_CB. XX SQ Sequence 1957 BP; 586 A; 381 C; 372 G; 618 T; 0 other; cacaggtgga tcgcgcagaa cactatatgg gcgcattgtg gcccatactg tgaatgcgcg 60 catatagcgt tcgttatgcc ctctatatgg gctggtggtt gctggtgggc ggtggtgggc 120 gtcgagtaag cagggaaagc atatgcccag tccgtgctcg catataggtt ccatattccc 180 tcaacattct aatcgagtgc aaacaaactg taaacttcga tcccatatat ctcatttcct 240 gtaaaagata tcagaaaatg atcaactgac aaaatgttta ttataatatc aaaaacatgc 300 tgtcagttaa caactttttg atatctttca caggaaccca gataaattag ctcaaagttg 360 aaagttaaag gggaaggggt ggatcattct attatgtgtc ttcacggaaa cctgatagca 420 tttacagaac atgtaaatgt tttttgcaga aataatagct tgaaactctt ctcttgatat 480 tctcaggata aaatttttgg ttctcaaaga attgtattta tgactgttga ctatcgaaaa 540 atagtgttat cggtgaaaag tagttaacca agacagatga tcggaaaaca tatacaggtg 600 ctggatttta ggcttggaat tccattaaac ttgatgggaa ttttgtcttt gaaaagttca 660 acattttctg caggctgtgt tgcgacgttt actccaaaaa aacctgtcaa aatccggatt 720 ttatgttacc ataaaatgcc cttatgctct gtctgcttat tttacatcac aatattctat 780 atttccacat gaatcggatt tttttgccca tttaatttgg taattccgct gaaaaagtac 840 acaacgacgc tccgacatcc cgcatcgcgc gttgtttacc gtaaatctac actcagattt 900 tcgatgaatt tgcagatatt tttgcctatt tttgttcgat tttctttaat ttttcacgat 960 ttcacaggtt ttttttacaa atttttcact tgcgaactca ttttcatcgt ttctagccgt 1020 tttcctcggg tttctacaca taaattccta aagaaataat tattttaggc ccaccgatgg 1080 attccaacgc ctcacatttc tacctaaagc taaaaaccaa aagttttcgg cggatagcta 1140 caggtaagaa acatgcatga cattcagttt ctcactgact tcatttttta gaagcggagc 1200 tcggaattcg gtgacaacta aacccttcac cgtctccact ggccacacga caagtgaaag 1260 aaacagcacc gacagaaaaa cgaaaaggtt agcgaatttt gtgtttgaaa cgctcgaaaa 1320 taattcgata aaagaacacc tgcgaaattg ttttgactga acttgtaaag agcattctac 1380 tcttgtgtct atgactccag ttcttcggag ctttcgaaac atgatgaaaa acgtgccaac 1440 acgaaattca gctctctcaa taaatcatgt atacgaattt gcaaaagcag cttcgttttc 1500 taagtactag gcttgacaaa ttttcggtgt gaataagtaa aactatcgaa aattttcaaa 1560 atatattcag tttttcagaa aaaaaacaac caagagcaac ttctcgattg gactttcgtc 1620 taatggatat aaagagggag aaatgcgacg aaaatatcga gtccaaggag ccaggagaca 1680 aaaatgttaa ttttttattt ttatgttctt ttcacttcat tttttgtcat ttttattaat 1740 tttcaataaa tttttactgg taaacactat tttcagttca cagagaatat taggacctgg 1800 gggaggggag gaattgctgg gcggcggcgt ggatcttata tgctttagtc ggcgcgtgga 1860 tcctatatgc tcgcacgatg cgcccctata tgtttcgtat tgcgagcata tacggcaccg 1920 cgcgatccca tataacgttc ctcgcgatcc acctgtg 1957 // ID MARINER29_CB repbase; DNA; CBR; 446 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000289; DNA; KW MARINER29_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-446 RA Pavlicek A. and Jurka J.; RT "MARINER29_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 89% identical to the consensus. CC MARINER29_CB contains 19bp-long imperfect TIRs and is flanked by CC TA target duplications. Similar to MARINER30_CB, MARINER23_CB, CC and MARINER22_CB. XX SQ Sequence 446 BP; 143 A; 66 C; 99 G; 135 T; 3 other; ccgtaaaaac tctaatttaa taccatggcg ttctattttt tcaatgtata gctgggagaa 60 cgttctatta gagggtggca ttcaattaga ggatggcatt ctattattcg ataccaaaaa 120 aaaatttcgc gaagattctg atgatgccca aaatactttg agaaaaagcg gaaagtgggg 180 gaataatcag gaaagttnaa aattcaaaaa accatctact tgcgtactgc acaatgtntt 240 caaccctctc taaaaagcaa caaattaata atttggtgaa tcgcaattta tttnttttga 300 ggtagcattc tattaggggt ggcattcaat tagagggtgg cattcaattg gagggtggca 360 ttctattttt cagagcacag ctcagagaac gttctattag agggtggcgt tcaattagga 420 ggggctatat attagagtgt ttacgg 446 // ID MARINER42_CB repbase; DNA; CBR; 1700 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000353; DNA; KW MARINER42_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1700 RA Pavlicek A. and Jurka J.; RT "MARINER42_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(8), 213-213 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 91% identical to the consensus. CC Contains ~160bp-long TIRs, flanked by TA target duplications. CC Similar to MARINER40_CB and MARINER41_CB. XX SQ Sequence 1700 BP; 610 A; 250 C; 243 G; 597 T; 0 other; cactgcgcgc cataattata gagccacttc aatttttgta atttttctga tatccatgaa 60 agtttcagaa tcctttccga tggtgataaa tatcattttt gaatctgaaa atgtaaagaa 120 cattcaatta tagatagtga agcaacggtt tgaaaaaaat gaaaaaatgt caaaaaagca 180 atttttcaca taattatgga gccacttcaa aaatcttgcc atcatcacaa tttgttcact 240 gtaaaaagca gatattcaaa ttttccacta aaaattgata tttccaaatc aatttctaaa 300 ctaatttcag tagaaaaatt ttctgttaga aatgattttc gaaatttttt tcacaaaaaa 360 cggaaggttt gcaaaaaaac aatttttgcc tattccaaat tttttcagga ttgtataagt 420 tatgtcagat tattcataag aactcgttaa acattatcaa atgcattatt tagttttcca 480 aagcgtgtaa agtactgatc aaagggtgca aacaataatt atttgagttt attgaagcca 540 actttaggta agccgaaaat atagtaaata tgacgggata catttgaagc ttttcacatt 600 tattaaccat aaatagagct ttaatttctt agttggcaag ttttatcatg actccatcca 660 aaaaagttat tttgctccga cgtgtcgcga acgttaactc agaactttct gcagttttgc 720 acttcttggt ttccagaggt gtatctcatt tgtatgaatt tgtacaaaaa agttgtcaac 780 aataaaaatg aagctctatt tttgttttat atttctagaa attttcaacc ctatacgaca 840 atgtatgttt gtagctcaaa aacttatctt ttttcaattg aaaaaacacc atatattact 900 gtttggaaaa ataacataca ttgtcgtata gggttgaaaa tttctagaaa tataaaacaa 960 aaatagagct tcatttttag ttgacaactt ttttgtacaa attcatacaa atgagataca 1020 cctctggaaa caaagaagcg aaaactgatg agagttctga gttaacgttc gcgacacgtc 1080 ggagcaaaat aacttttttg gatggagtca tgataaaact tgccaactaa gaaattaaag 1140 ctctatttat ggttaataaa tatgaaaagc ttcaaatgta tcccgtcata tttactatat 1200 tttcggctta cctaaagttg gcttcaataa actcaaaaat tattgtttgc accctttgat 1260 cagtacttta cacgctttgg aaaactaaat aatgcatttg ataatgttta acgagttctt 1320 ataaataatc tgacaaggca aaaattgttt tttgcaaacc ttccattttt tgtgaaaaaa 1380 atttcgaaaa tcatttctaa cagaaaattt ttctactgaa attagtttag aaattgattt 1440 ggaaatatca atttttagta aatttgaata tctgcttttt acagtgaaca aattgtgatg 1500 atgatttttg aagtggctcc ataattgaaa aatacatttt cattttttca aaccgttgct 1560 tcactatcta taattgaatg ttctttacat tttcagattc aaaaatgata tttatcacca 1620 tcggaaagga ttctgaaact ttcatggata tcagaaaaat tacaaaaatt gaagtggctc 1680 tataattatg gcgcgcagtg 1700 // ID MARINER59_CB repbase; DNA; CBR; 1612 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000152; DNA; KW MARINER59_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 908-1612 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1612 RA Pavlicek A. and Jurka J.; RT "MARINER59_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 330-330 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 90% identical to the consensus. CC MARINER59_CB contains ~204bp-long TIRs and is flanked by TA CC target duplications. TIRs similar to MARINER20_CB, MARINER43_CB, CC and MARINER33_CB. XX SQ Sequence 1612 BP; 493 A; 329 C; 320 G; 467 T; 3 other; cagtgcgtaa cataagtata gggccacccc aaaatctagc taaaattttt ttaaatcgca 60 attttttgaa aatctaaaaa cagaatcgtg atcagcatcc aaaattaccc caggaaaatg 120 attttggtaa ttttattcat aaactgaccg gatgccggaa caaaagctaa aaaatcggct 180 tctgtaagcg taacataagt ataaggataa anattangna actctttaga aattagtggc 240 tgggcacccg aaaaacgtga atccggtcaa caaaaaatca taatttaagt agactgtcac 300 tattctaatc ataatttccc aaaactactt tgtctttatc cgttagatgg gtccaaatcg 360 ctattttaga tcattttcgg ttgaaccgtc tggattgtca gcttgaagat cagaagttca 420 tattagagaa tctctagggc ctcaatatct gtccagtaga catttcctag gttcactaac 480 tttttcgggc tcatatgaag tacccaaccg tgtttccgga accatgaaag agccaagaaa 540 cttgcgagta cacaaattct ggcagtcacc agccccaggc atcatggttg ataaccgaaa 600 ctgagaaggc aaggtgataa cggatacagc taaacgtgtg taagtcatca gcatgcattt 660 tagccggtga aaaaccgttg atgggacagg gagaagcttc aaataccaca agacaaccaa 720 tgtttggaga aaataacaac aaccgtctta aaaactcgaa ataaagcgca tgaggatgtt 780 ccggttatgc agtcagactt ggcaactgta ataaaacatg tccaaacgat caatcagcaa 840 actgaagtat cgccggaaac tttattccta atttgtaaga gggccattaa gctttgcttc 900 aggataaggt tttcctgcgg tatttgaagc ttctccctgt cccatcaacg gtttttcacc 960 ggctaaaatg catgctgatg acttacaccc gtttagctgt atccgttatc accttgcttt 1020 ctcagtttcg gttatcaacc atgatgcctg gggctgctga ctgccagaat ttgtgtactc 1080 gcaagcttct tggctctttc atggttccgg aaacacggtt gggtacttca tatgagcccg 1140 aaaaagttag tgaacctagg aaatgtctac tggactgata ttgaggccct agagattctc 1200 taatatgaac ttctgatctt ccagctgata atccagacgg ttcaactgaa aatgacctaa 1260 aacagcggtt cgcacccatc tgacggacac agacaaagta attttgggaa ataatgattc 1320 gaatagtgac aggctactta aattatgatt tttggttgac cggattcacg tttttcgggt 1380 gcccagccac taattcccaa agtggcccta tacttatgtt acgcttgcag aagccgattt 1440 tttagctttt gttccggcat ccggtcagtt ttatgaataa aattaccaaa atcattttcc 1500 tggggtaatt ttggatgctg atcacgattc tgcttttaga ttttcaaaaa attgcgattt 1560 aaaaaaattt tagctagatt ttggggtggc cctatactta tgttacgcac tg 1612 // ID DNA8-11_CB repbase; DNA; CBR; 259 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000234; KW DNA; DNA8-11_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 64-153 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-259 RA Pavlicek A. and Jurka J.; RT "DNA8-11_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(5), 214-214 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 98% identical to the consensus. DNA8-11_CB CC contains 65bp-long imperfect TIRs and is flanked by 8bp target CC duplication. TIRs similar to DNA8-10_CB. XX SQ Sequence 259 BP; 61 A; 75 C; 69 G; 54 T; 0 other; gagaccccgc aaattccggg gaaaaaaaaa tcggggaaaa aaaccgggga aagtgggcgg 60 agtcgagaaa aaccgtgcgg caaaaccgtg ccagggttgc aatttaggct ccgccccctc 120 atgaccgtgt ccaaatgtgc agaaaaaccg tgcggcaaaa ccgtgccagg gttgcatttt 180 aggctccgcc cccgactccg cccacttttc cccggttttt ttccccggtt ttttctttcc 240 ccggaatttg cggggtctc 259 // ID DNA9-1_CB repbase; DNA; CBR; 203 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000059; KW DNA; DNA9-1_CB; Interspersed repeat; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 21-201 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-203 RA Pavlicek A. and Jurka J.; RT "DNA9-1_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 85-95% identical to the consensus. CC DNA9-1_CB has a palindrome-like structure and appear to be CC flanked by 9bp-long target duplications. XX SQ Sequence 203 BP; 63 A; 40 C; 46 G; 54 T; 0 other; cacagggttc gaactgctgt ggtatgctgt tgcgctttaa tgagaaggtg acgtggcaaa 60 gttttaggcc cgtgaaaaat taattttgag gtggaaaatc aactaaaaat tgcgagaaat 120 ttgaattttt aacggcctaa aacttcgcca cgtcactttc tcaataaagc gcaacagcat 180 accacagcag ttcgaaccct gtg 203 // ID MARINER63_CB repbase; DNA; CBR; 399 BP. XX AC . XX DT 30-JUN-2005 (Rel. 10.06, Created) DT 30-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE MARINER63_CB - a family of nonautonomous mariner/Tc1-like DE transposons. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW Cb000445; MARINER63_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-399 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), E45-E45 (2003). XX RN [2] RP 1-399 RA Pavlicek A. and Jurka J.; RT "MARINER63_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 5(6), 154-154 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 98% identical to the consensus. CC MARINER63_CB contains 181bp-long TIRs and is flanked by TA target CC duplications. Related to Mariner-N1_CB. XX SQ Sequence 399 BP; 121 A; 66 C; 72 G; 140 T; 0 other; ttatccttgt cagagaaaaa aaaggttgag tcgaagtgta tgcgatgttt gtaaacaaat 60 atctgaaagc gtaaacaacc ggaaacagtt gaaacgagtg cgacagtaac ccggcgggaa 120 aatgttaaat ttacctattt tttagttttt ctcatatttt gcagcaaatt tcgtcgaata 180 tggtttgttt ttcattgttt tttgcggtat tttaaaatat attcgacgaa atttgctgca 240 aaatatgcga aaagctaaaa aatgagtaaa tttaatattt tcccgccggg ttactgtcgc 300 actcgtttca actgtttccg gttgtttacg ctttcagata tttgtttaca aacatcgcat 360 acacttcgac tcaacctttt ttttctctga caaggataa 399 // ID piggyBac1_CB repbase; DNA; CBR; 1045 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000181; DNA; KW palindromes; piggyBac superfamily; piggyBac1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1045 RA Pavlicek A. and Jurka J.; RT "piggyBac1_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 94% identical to the consensus. CC piggyBac1_CB contains 131bp-long imperfect TIRs and is flanked by CC TTAA target duplications. XX SQ Sequence 1045 BP; 357 A; 172 C; 172 G; 344 T; 0 other; gacgcgttct ctgtagaact caacttcagg cctattatcc actgtacaga aaaattcaaa 60 cttgtttttt ctggctgatt tttcatatat tgcatgttta tggacttcta aggtatatga 120 gatatagttt gtcccgacgc tgcaaaaata tggtcgtggg gtgtcattgg cactattttg 180 aacatttttg tattggcact atatttatat tcttccatct tccctggaaa aattcagatt 240 tttgcaaaaa agctattttt tggaccaaaa aatgaccgtc ctggaaaaaa tttccattat 300 tttataaaat taaacatgaa atttagattc tacattaaaa aatacattag aaactgtttt 360 gagataaaag ataacctgag cccctatgag ttttaggcca aaatgtgccc aaaaatgagg 420 tttcaccatg tgggggagta catggcaaca aaaattcgac caaaatcgac cctctccgat 480 tttgttcaaa ttttcaccag atgtagtatt tttgatgggt agtattctgg caaagtttca 540 gaatccgtgc tcatcgtctt cgtgcatttt cgaagcacca aaaaagcgac aaaaattgcc 600 cattttccat gaaaaatacg agctctaaaa atactacatt tgaacaaaat cggagagttt 660 ttaatgtatt ttttgatgta gaatctaaaa taatggaaat ttttttcagg acggtcattt 720 tttggtccaa aaaatagctt ttttgcaaaa aattgaaatt tttccaggga agatggaaga 780 atataaatat agtgccaata caaaaaatgt tcaaaatagt gcctaaaaac gttctacaat 840 aagacctaat cattatttca cttttgaaaa aaaatttttt agacacccca cgaccatatt 900 tttgcaggtg tgggacaagt cgggacaaac tatatttcat ataccttaga agtctataaa 960 catgcaatat atgaaaaatc agccagaaaa acaagtttga atttttctgt acagcactat 1020 ttttggttct gtcagagaat gtgtc 1045 // ID piggyBac4_CB repbase; DNA; CBR; 488 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000038; DNA; KW palindromes; piggyBac superfamily; piggyBac4_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-488 RA Pavlicek A. and Jurka J.; RT "piggyBac4_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 92% identical to the consensus. CC Flanked by TTAA target site duplications, 189bp-long TIRs. CC Related to piggyBac3_CB and piggyBac5_CB. XX SQ Sequence 488 BP; 145 A; 96 C; 97 G; 150 T; 0 other; agggggactc cgaccagaaa tttttattgc attaaaatgt gttaaaattt atctattttt 60 caaatattat tgcgaaaaaa ttcaaagaaa atccgaaatc cccgaaaaac ggcgttgaaa 120 aggaagaaaa ttcaaaaaaa ggtgccgccg ggggacgagg attttcagtg agaaacctag 180 gccacggcac ctgacagcct ttttttcaag tcgccgacag tggtttttta cgttttttac 240 ctgccggaca tgaaattgaa aaaaatccgg aaaatttgcc acgtaggaaa ggcgcccgct 300 gccgtggcct aggtttctca ctgaaaatcc tcgtcccccg gcggcacctt tttttgaatt 360 ttcttccttt tcaacggcgt tttttgggaa tttcggattt tttttgaatt ttttcgcaat 420 aatattcgga aaatagataa cttttaacac attttaatgc aataaaaatt tttggtcgga 480 gtccccct 488 // ID DNA2-3_CB repbase; DNA; CBR; 330 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.03, Created) DT 07-MAR-2006 (Rel. 11.03, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000022; KW DNA2-3_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-330 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-330 RA Pavlicek A. and Jurka J.; RT "DNA2-3_CB - a family of DNA transposons."; RL Repbase Reports 6(3), 115-115 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 95% identical to the consensus. DNA2-3_CB CC is flanked by TA target site duplications and contains 33bp long CC imperfect TIRs. XX SQ Sequence 330 BP; 102 A; 64 C; 53 G; 111 T; 0 other; ttgtcgaatt aaaaaaaagt gacacctgag aatttgaaaa cttttgcttt ttttgatcta 60 cgaaaaagtg cggcaaaaac gtaatatttc agaatttcgg ctcgttcgag ctactttcgc 120 gtttaagttt agttttttgc tgaaaaatag attctagaga tgctagcgat catttttata 180 ccaagaaatc aaaattttgt tcagaaaatc ccactaaatt cacataaata aatttgttat 240 ctacagtatc cgttttcgct ccgccccctc gtaaatcgac acgagcgccg tctccgagat 300 tttcaggtgt cacttttttt aatccgacaa 330 // ID TCB2 repbase; DNA; CBR; 1612 BP. XX AC . XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 27-JUL-2005 (Rel. 10.08, Last updated, Version 2) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000463; DNA; KW TCB2; mariner/Tc1 superfamily; transposase. XX NM TCB2. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Prasad S.S., Harris J.L., Baillie L.D. and Rose M.A.; RT "The Genome Sequence of Caenorhabditis briggsae: Evolutionarily RT conserved regions in Caenorhabditis transposable elements deduced RT by sequence comparison."; RL Genome 34(1), 6-12 (1991). XX RN [2] RP 1-1612 RA Pavlicek A. and Jurka J.; RT "TCB2 - a family of autonomous mariner/Tc1-like transposons."; RL Direct Submission to Repbase Update (AUG-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99-100% identical to the consensus. CC TCB2 contains 28bp-long TIRs and is flanked by TA target CC duplications. CC Positions 526-1345 encode a 273aa transposase. Related to TCB1, CC MARINER36_CB, TC1_DM, TC1_XL, and TC1_FR2. XX FH Key Location/Qualifiers FT CDS 526..1344 FT /product="TCB2_ORF" FT /note="transposase." FT /translation="MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTPSLRTV FT RRRLQDAGLHGRRPAKKPSISKKNRIARVAWARAHLHWGRQDWANHVFSDE FT SKFNLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSIGP FT LRRITSIMDRFVYEDILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEW FT FRRRHVDLLDWPSQSPDLNPIEHLWEHVERQLRGVRASNANQKFDQLQDVW FT QAIPMSVIDTLLDSMPRRCQTVIDAKGFPTKY" XX SQ Sequence 1612 BP; 435 A; 348 C; 367 G; 462 T; 0 other; cagtactggc caaaaaggta ttcgcaaacg gttttttgag agtaactttg ctgaaactta 60 agggatcgat ctgaaaattt tactgtgcat gtcgtacacg gtgacgacaa attgcgtaca 120 aggaaattgc atcattttca gaaatttttt gtttttttca attttttcaa ttttttcgtt 180 ttttcacttt tttcatattt ttatattttt ggatattatg gtttctaaga atgttggttt 240 tggctcctat gtatttaaaa ctgtttacag acatggccag acccctcgga aaaaaaaaac 300 atctctcagg acatccgtaa agccatcgtc atcggcttca gaagtggatg ttccaaggac 360 ctcttggcgc agcagttcaa tgttactaaa cgtgccatcg agaagatctt gaagcagttt 420 cgggatgagg taatattcaa aaatagtata gttatggaaa aaaatgttta gggagccttg 480 gtggagcgaa aatcgcctgg aagaccgcgt atcacgtcga agaacatgga tcggaacatc 540 gtccgagttt caagagagga tccccagagg agttctacgg acattcagat ggtcgtgaag 600 actccaaatg aagtcacacc atccctgaga accgtcagaa gacgtcttca agatgctgga 660 ctccatggac gacggccagc taagaaacca tcgatcagca agaagaacag aatcgcccgc 720 gtagcatggg ccagagctca tctccactgg ggacgtcagg attgggctaa tcacgtgttc 780 agcgacgaat ccaagttcaa tctgttcggt actgacggta tcaagtggat tcgccgtccg 840 gttggatgtc ggttcgatcc cagctaccag ctccaaaccg tcaagcatgg aggtggatcg 900 gtgatggtct ggggctgctt ctctgggact tcaatcggcc cgctgagaag aattacaagc 960 atcatggatc gctttgtgta tgaagacatc ttggagaaca caatgagacc ctgggcaagg 1020 tctactgtgg gccgggcgtt cgttttccaa caggataacg acccgaagca cacctcgaag 1080 cacatcaagg agtggttccg acgccgccac gtggatcttc tggactggcc aagtcaatct 1140 ccggacttga atccgatcga acacctctgg gagcatgtcg agagacagct tagaggggtt 1200 cgtgcctcga atgccaacca gaagttcgac caactccaag atgtctggca ggccatcccg 1260 atgtctgtca tcgacaccct tctcgactcg atgccaagaa gatgtcaaac ggtaatcgac 1320 gccaaaggct tcccaacgaa gtactaaagc tattttattc attttctatt attatttttc 1380 gtttaccggt ctatcctaga tctcagaagt caaagttcca tttaccggtt ttttgcaatt 1440 ttcatgaatt tttcgatttt ttttcaattt tttgaaattt tgactattct tgttgttgaa 1500 tcagtttctt ttaccgtttt aaactttgtc ttaaaatatc agattgatcc gggaagtttc 1560 agaaaagtta tgctcgaaaa actatttgcg aatacctttt tggccagtac tg 1612 // ID MARINER66_CB repbase; DNA; CBR; 539 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 02-FEB-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW Cb000214; MARINER66_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-539 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-539 RA Pavlicek A. and Jurka J.; RT "MARINER66_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 6(1), 37-37 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 93% identical to the consensus. CC MARINER66_CB contains 29bp-long perfect TIRs similar to TCB1 and CC has a palindromic structure. Flanked by TA target duplications. XX SQ Sequence 539 BP; 193 A; 82 C; 80 G; 184 T; 0 other; cagtactggc caaaaagaat gcgtcgacac tgtcgactca acaggttttt tgactgtaac 60 tttcttcaaa atagagctaa agtgtcaaac ttttttgtaa aatgtagcaa ataaccctag 120 aaaaaatatt ctaaaacatt tttacccaga aaacggaaaa caactttttt ggcgacaaaa 180 ttcacttttt ggaaaatttc gggtttttgg aggttttttt tttcaaaaat tttggaaaaa 240 atagaaaacg atgatgaata attttttaaa tcaagatcaa aattaatttt acacattcat 300 aatcgtcaga tttttgaaaa caaaaaaaaa tcccaaaaat ccgaaatttt ccaaaaagtg 360 aattttgtcg ccaaaaaaag ttgttttccg ttttctgggt aaaaatgttt cagaatattt 420 tttatagggt tatttgctac attttacaaa aaagtttgac actttagctc tattttgaag 480 aaagttacag tcctgtcgac gcatttaacc tgtcgacgca ttctttttgg ccagtactg 539 // ID MARINER48_CB repbase; DNA; CBR; 1151 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000484; DNA; MARINER48_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 440-1148 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1151 RA Pavlicek A. and Jurka J.; RT "MARINER48_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 297-297 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99-100% identical to the consensus. CC MARINER48_CB contains 492bp-long TIRs and is flanked by 3bp CC target duplications TNA. C|TNA|G insertion motif. TIRs are CC similar to MARINER49_CB and MARINER53_CB. XX SQ Sequence 1151 BP; 364 A; 222 C; 220 G; 345 T; 0 other; ctcactaggg aatgactcac agaagatgtg gagttatggg acgagaccta tatcattcga 60 aagaggatga aatttcattt tcaaatatat gctcagtttt tgcggcggcc tccgctaact 120 cgagaaattt aggtcagaag ttttcagtag attttgcact gaaatgcata cgtgaacgct 180 tccacgtcct catttctttt atacgctttg aagaaccatt gaaaacagca gtgggatggt 240 tcagtggtaa agcggcggga tggggaaatg gtactctatg gttcgactcc ttcatagtcg 300 aaactctttt tttatttttt gttggttttt tatatgacct gtttttgagc tcaaaagctg 360 ttttcagcag ttttccatac tctaaacacc tttggcatct tgtcaaatac aaattaacca 420 agtttttgga aaaaaaattt ctgaagaaaa ttcgcatgtt ttcatgatcc atacacctct 480 tttcaaattt tcaaaaaaaa atttttttga aacacaaaga aatctatatt tattattata 540 acgattatta ttatgtctcg cttttataga cgggcggcga acgggcggca agcgggcggc 600 tcaccgcccg cccggatgga aaccctactg gaataatccc gccaaggata aaaaaatcgg 660 aaaatttgaa aagaggtgta tggatcatga aaacatgcga attttcttca gaaatttttt 720 ttccaaaaac ttggttaatt tgtatttgac aagatgccaa aggtgtttag agtatggaaa 780 actgctgaaa acagcttttg agctcaaaaa caggtcatat aaaaaaccaa caaaaaataa 840 aaaaagagtt tcgactatga aggagtcgaa ccatagagta ccatttcccc atcccgccgc 900 tttaccactg aaccatccca ctgctgtttt caatggttct tcaaagcgta taaaagaaat 960 gaggacgtgg aagcgttcac gtatgcattt cagtgcaaaa tctactgaaa acttctgacc 1020 caaatttctc gagttagcgg aggccgccgc aaaaactgag catatatttg aaaatgaaat 1080 ttcatcctct ttcgaatgat ataggtctcg tcccataact ccacatcttc tgtgagtcat 1140 tccctagtaa g 1151 // ID tRNAAlaAGC_CB repbase; DNA; CBR; 87 BP. XX AC . XX DT 12-JAN-2005 (Rel. 14.08, Created) DT 02-SEP-2009 (Rel. 14.08, Last updated, Version 1) XX DE tRNA from Caenorhabditis briggsae. XX KW tRNA; Pseudogene; TRNAAlaAGC_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-87 RA Smit A.F.; RT "tRNAAlaAGC_CB - tRNA from Caenorhabditis briggsae."; RL Direct Submission to Repbase Update (02-SEP-2009). XX DR [1] (Consensus) XX SQ Sequence 87 BP; 16 A; 20 C; 28 G; 23 T; 0 other; ggtgcggggg tatagctcag tggtagagcg ctcccttagc atgggagagg gctggggttc 60 aattccccat acctccagaa tcttttt 87 // ID MARINER4_CB repbase; DNA; CBR; 1250 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 27-JUL-2005 (Rel. 10.08, Last updated, Version 2) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000007; DNA; KW MARINER4_CB; mariner/Tc1 superfamily. XX NM MARINER4_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1250 RA Pavlicek A. and Jurka J.; RT "MARINER4_CB - an active family of autonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(4), 115-115 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >99% identical to the consensus, CC many have an intact reading frames (pos. 165-1179) encoding CC transposase. CC MARINER4_CB contains 28bp-long TIRs and is flanked by TA target CC site CC duplications. Similar to MAR_CE. XX FH Key Location/Qualifiers FT CDS 165..1178 FT /product="MARINER4_CB_ORF" FT /translation="MFVPTAIHIRHVLIYLFLSHTTMKDSETFLKNVYNTH FT APHYNTIRNWFHRFEKDDFSLDEKDRSGRPRELDLDKLKHALQSDPFQSSR FT ELAVTFGVHHSTVLEGLKSLGMRKLFGRFIPHHLTQANLDRRVDDSITLLT FT LHAGDRWLDRLITGDEKWVFYDNHHRKSQWVGEGESPQDVPKPDLHPKKVM FT LSVWWGVDGPIYWELLPEGKTITGDLYTTQLRNLKKAVDRSALKDKKVYYQ FT HDNARPHVSKQVKQELMGYGWNVLPHPPYSPDLAPSDYWLFGDMTRAFEGR FT SFNSRGAVEAALKQYFASRPAGFYRNGIHKLRERWRHVVDNDGQYN" XX SQ Sequence 1250 BP; 345 A; 303 C; 270 G; 332 T; 0 other; ttaggttggc gggaaagtct ttgtcactct gtttgtttaa tcactgttct cgtatatgga 60 ggctgtgtat gatatcgact ctagtgaata acaaggtgat aagaaccttc catataaaca 120 agtccccatc tccttccctg ctcctcatct gtaattgaaa cgatatgttt gttcccactg 180 ctattcacat cagacatgtt ttgatttacc tcttcctatc tcacaccacg atgaaggatt 240 cggaaacttt cttgaagaat gtgtacaaca cacatgcccc tcactacaat actattcgca 300 attggttcca tcgtttcgaa aaagatgact tctcgctcga tgaaaaggat cgctctggga 360 gaccccgtga gttggatttg gacaagctga agcacgcatt gcaatcggat ccatttcaat 420 ctagccgtga actagctgtc acattcggag ttcaccatag cacagtcctt gaaggtttga 480 agtctcttgg aatgagaaaa ctttttggtc gattcatacc tcatcacctg actcaagcca 540 accttgaccg ccgagtcgac gattcgatta ctcttctcac tctccacgcg ggcgatcgat 600 ggctggaccg gctaataacc ggagatgaga agtgggtctt ctacgataat caccacagga 660 aatcccagtg ggttggagaa ggagagagcc cacaggatgt ccccaaaccc gaccttcatc 720 cgaaaaaagt tatgctctct gtgtggtggg gagtggacgg ccccatctac tgggaacttc 780 tgcccgaggg caaaacaata actggagacc tctacactac tcaactacga aacctcaaga 840 aagcagtcga ccgttcggcc ctgaaagaca agaaagtgta ctatcaacat gataacgctc 900 gcccacatgt ttcgaaacaa gtgaagcagg agctgatggg atatggatgg aatgttctcc 960 ctcacccccc gtattctcct gatcttgctc cttccgacta ttggttattt ggcgatatga 1020 cacgtgcctt cgaaggaaga agcttcaatt cccgtggagc ggtcgaagcg gcactcaaac 1080 aatactttgc ctcacgcccg gctggattct accgcaatgg aatccataaa ttgagggaac 1140 gttggagaca tgttgttgat aatgatggac aatataatta attattcggt tattttttct 1200 ttgagaaata aactattgaa aaagtgacaa agactttccc gccaacctaa 1250 // ID HELITRON6_CB repbase; DNA; CBR; 1866 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000159; KW Cb000160; DNA; HELITRON class; HELITRON6_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1866 RA Pavlicek A. and Jurka J.; RT "HELITRON6_CB - a family of nonautonomous HELITRON transposons."; RL Repbase Reports 4(10), 273-273 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. HELITRON6_CB is flanked by TC-CTGG termini CC and inserts between 5'T and 3'A. Distantly related to CC HELITRON5_CB. XX SQ Sequence 1866 BP; 599 A; 329 C; 348 G; 590 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgagtgt gtatgtgtgt gtgtccggtg 60 ttcccgggtc acctgcccta tcgaagtcca gaatggacca aaatttccca aattttcaca 120 gatgacccga aatagcagcg agatgatgcc cgtctatttt atgtttcgaa attttgagtt 180 tgacgccttc tggagacgtt attctgtttc tacggagcaa atttttagaa aattattaaa 240 acaattttta cgtcatcccc gtttagccgc ccaaattttt ttcttatcca cgctatttct 300 gggagaaagg tgattttgag gaaacgttat tttagtctga gtttttgaat atttgaaagg 360 gaaaaattct gaaacaggaa aaaatagatt gcgaggaaac ataagatcgc gctttctgga 420 tcactcgaat tttcaggatt tcaactttta agaatttcat aacttaattt ctgaatttcc 480 aaattctgga atttctaaat tttggatttt ccttattcac cgaatttgca aaaaacattt 540 cagaatttct gattttagaa cttttcaggt ttccaaattt cggagtttct gagtttttgg 600 aaattatgat tttcgaattc gtgaatctat aaacttctga tattccgaag ttccaagaac 660 tcctggagac tttgttcatt tcgaaacgta gaacttctga atttccaaat ttccgggttc 720 tcaatttctc aaattttcga acttcagaga gcaaagaaac tatgaaaaaa aggcaaaaaa 780 ggtgatctaa tttggtactt ttttgcatga ttatgggcat tataagcggg agatgtccag 840 tcgttcatta agcgaaatta agaattttcg aattcctgga aatcggaaat attaagttgt 900 tcaaaaagta atgttcgttt ttgattcatt ttaacttaat gcagaactgg aacaagataa 960 gattaatcaa ggggcttttc tccatcatca tctaccactt tccaacaaca catgctcaaa 1020 gacctcttca ggatagctgg aagtcgaagt agttcgcact aaacgcccat tacttttcga 1080 acaacctaat actaattttc caaattccag acggtcagat tttcgaaaag ttgacaagcc 1140 ctcactataa gataacgcaa tgtaagcggg agccaggagg tccagccaaa tcgactgaat 1200 tcaaaaattt ttcgaaattc ggaactttcg gaaaccagga aatacaaaaa ttctgaaact 1260 tagatatcga aacatttgga actttaggaa accggaaaac cattcactcc gaatttcaga 1320 acttatagat ctcagtcata agtagtttcg aaactttgaa aatttggaaa attaaatatt 1380 caggaatttt tgtgacttcg aaaaatcgga aatttagaaa ttgaattgta agatacagta 1440 tgcggaagcc agaagattga gccccagggc agcgactgat tcccaaaatt ctgaatatct 1500 taatttccga gttgataaac tccgaaatta ccgcattccg cgtttcctaa tttaggtttt 1560 cagaaactct gaatgtcgaa gtctagaatt ttccgatttt ggagctagaa aaaatctctg 1620 agaaaaggta ttgaaatctc tttttggagt ggcaagttat tgttagcaga ggccagtagg 1680 tttagcccgg aggggcgcaa accgacattt gaaaatttga aaattcggga ggaaaaaaac 1740 cagaaagtta acaatttttc acattcaatc aaaacttctt cttttatttc ctcaagtttt 1800 gagattcgaa cgttttaagt gtagccagaa gattgtagcc gccgacaggc ggcggaaatc 1860 gactgg 1866 // ID DNA3-2_CB repbase; DNA; CBR; 347 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000168; KW DNA; DNA3-2_CB; Interspersed repeat; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-347 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-347 RA Pavlicek A. and Jurka J.; RT "DNA3-2_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~95% identical to the consensus. DNA3-2_CB CC has a palindromic structure and is flanked by 3bp long target CC duplications. XX SQ Sequence 347 BP; 111 A; 63 C; 60 G; 113 T; 0 other; tggggttatt caccaaaatg tagaaaaatt cggagaaaat ggagaaaatt tcgcaaaacc 60 gcggagaatg aaccaatctg gctgaaattt cggagaaaaa ttggagaaaa ttatagggaa 120 catattcaca aaatttgggg tcaaaatatc cactttgaac attttgtctg aaattccagc 180 caaattttca aaattaattt tgtgacccca aattttgtga atatgctctc tataattttc 240 tccgattttc tccgaaaatt tcagctagat tggttcattc tccgcggttt cgcggaattt 300 ttctccattt ctccgaattt ttctacatgt tggtctgaat aacccca 347 // ID MINISAT7_CB repbase; DNA; CBR; 180 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeat. XX KW MSAT; Satellite; Simple Repeat; Cb000528; MINISAT7_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-180 RA Pavlicek A. and Jurka J.; RT "MINISAT7_CB - minisatellite repeat."; RL Direct Submission to Repbase Update (SEP-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT7_CB consist of repetitions of a 9bp CC motif CCATAGATA. The consensus contains 20 copies of the unit. XX SQ Sequence 180 BP; 80 A; 40 C; 20 G; 40 T; 0 other; ccatagatac catagatacc atagatacca tagataccat agataccata gataccatag 60 ataccataga taccatagat accatagata ccatagatac catagatacc atagatacca 120 tagataccat agataccata gataccatag ataccataga taccatagat accatagata 180 // ID piggyBac7_CB repbase; DNA; CBR; 503 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000213; DNA; KW piggyBac superfamily; piggyBac7_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-503 RA Pavlicek A. and Jurka J.; RT "piggyBac7_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC Elements of piggyBac7_CB family contains ~168bp-long imperfect CC TIRs CC and are flanked by TTAA target duplications. Related to CC piggyBac4_CB CC and piggyBac5_CB. XX SQ Sequence 503 BP; 153 A; 99 C; 95 G; 156 T; 0 other; agggggactc cggtcaaatt ttttattgca ttaaaatgtg ttaaaattta tctattttca 60 gaatattatt gcgaaaaaat tcgtaaaaaa aaatccgaaa tccccaaaaa acgccgttga 120 aaaggaaaaa aattccaaaa aaaggtgccg ccgagggacg aggattttca gtgagaaacc 180 taggccacgc gagcggcgcg actttcttac cggacaattt ttccggattt ttttcgcttt 240 tatctccgac aggtaaaaaa cgttaaaaaa cactgtccgg ccacttgaaa ataatgctat 300 caggcgccgt ggcctaggtt tctcactgcg cgggaattca aatcctcgtc cctcggcggc 360 accttttttg aatttttttt cattttcaac ggcgtttttc ggggatttcg gatttctttt 420 gaattttttc gcaataatat taggaaaata gataactttt aacacatttt aatacaataa 480 aaatttttgg tcggagtccc cct 503 // ID MARINER31_CB repbase; DNA; CBR; 1170 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000295; DNA; KW MARINER31_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1170 RA Pavlicek A. and Jurka J.; RT "MARINER31_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 93% identical to the consensus. CC MARINER31_CB contains 288bp-long TIRs and is flanked by TA CC target duplications. TIRs are similar (70%) to Tc3 from C. CC elegans. XX SQ Sequence 1170 BP; 373 A; 198 C; 200 G; 399 T; 0 other; cagtgcgcgt cataatgata gcaccacccc attttttgag gttttcagaa aaactaaaaa 60 ttttggagaa aaacagctaa tgccattcga ttcagcaccc caaaaaacct atgtgtcccc 120 tgaatcaagt gccagtcaag tgttttagga ctacagtaac caaaagtctc tctgcacacc 180 gcgtcataat gatagcacca ccctggaaaa cgtaaaatct catgtttatt tgagaaataa 240 attgagattt tttgttggaa ttcgttaaaa tagtcttaaa acagtctatt ttgacagtct 300 gcacaaaaat tgatgtctct attcaagttt tagaaaaaat tattttcaga cattttcgtc 360 attttttggg tttctagaat aaatcttgaa taactttgct cctggataaa attttgagct 420 gaaattgata agaaatattt gttcagtggt ctggagtgtc tactagttgt tttcatgcta 480 ttctgagtcg tcgtttgtaa tttaaggaaa accgaaattt cgaaaacgag ccttgaattt 540 cggtggttct gattttcttt taaaaactga atttgtccag taaaaattat ttttctgtac 600 gaaatcataa tttcaaaaac gattttggta acttagaaca tcttttgaac gttttacact 660 tctttgaaaa atttcatttt tggatatttt ttcagttcaa agctcaatct caattatgag 720 ctaccagagc tcatgaatgc cttgaacaat tgcaacatga ctacgagcat tcacaagata 780 tttcctatga atttcagctc aaaattttac ccaggagcaa agttattcaa gatttattct 840 agaaacccaa aaaatgacga aaatgtctga aaataatttt gtagactgtt ttaagactat 900 tttaacgaat tccaacaaaa aaatctcaat ttatttctca aataaacatg agattttccg 960 ttttccaggg tggtgctatc attatgacgc ggtgtgcaga gagacttttg gttactgtag 1020 tcctaaaaca cttgactggc acttgattca ggggacacat aggttttttg gggtgctgaa 1080 tcgaatggca ttagcggttt ttctccaaaa tttttagttt ttctgaaaac ctcaaaaaat 1140 ggggtggtgc tatcattatg acgcgcactg 1170 // ID MINISAT2_CB repbase; DNA; CBR; 350 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeat. XX KW MSAT; Satellite; Simple Repeat; Cb000125; MINISAT2_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-350 RA Pavlicek A. and Jurka J.; RT "MINISAT2_CB - minisatellite repeat."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT1_CB composed of 10bp-long repeated CC ATTCTAGAAA units. The consensus contains multiple units. XX SQ Sequence 350 BP; 167 A; 60 C; 35 G; 88 T; 0 other; attccagaaa attctagaaa attccagaac attctagaaa attccagaac attctagaaa 60 attctagaaa attccagaaa attctagaaa attccagaac attctagaaa attccagaaa 120 attctagaaa attccagaac attctagaaa attccagaaa attctagaaa attccagaaa 180 attctagaaa attccagaac attctagaaa attccagaaa attctagaaa attccagaac 240 attctagaaa attccagaaa attctagaaa attccagaac attctagaaa attccagaaa 300 attctagaaa attccagaac attctagaaa attccagaaa attctagaaa 350 // ID MUDR6_CB repbase; DNA; CBR; 303 BP. XX AC . XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 15-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000242; DNA; KW MUDR superfamily; MUDR6_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-303 RA Pavlicek A. and Jurka J.; RT "MUDR6_CB - a family of nonautonomous MUDR-like transposons."; RL Direct Submission to Repbase Update (AUG-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 92% identical to the consensus. CC Palindromic structure, flanked by 9bp target duplications. CC Related to MUDR7_CB, MUDR5A_CB, and MUDR5B_CB. XX SQ Sequence 303 BP; 92 A; 61 C; 63 G; 87 T; 0 other; ggccaaaaat tcggggggta caacgattcg ggggtacaag ggggtacaac tgatttaggg 60 gtacaaaatt agtgattcgg ggggtacaaa atgcctgggt aaattttatt tttcgtaccg 120 ttgagttgaa attttttatc taaacgaagc tgcgaaccat ttagagacaa aatttcaatt 180 cagaagtaca aaaaatacaa cttgctaaaa aattttgtac ccccgaatca tggattttgt 240 acccctaaat cacgttgtac ccccttgtac ccccgaatcg ttgtaccccc cgaatttttt 300 gcc 303 // ID DNA4-1_CB repbase; DNA; CBR; 258 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000040; KW DNA; DNA4-1_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 5-258 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-258 RA Pavlicek A. and Jurka J.; RT "DNA4-1_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 88% identical to the consensus. CC DNA4-1_CB contains 4bp TIRs and is flanked by 3bp target CC duplications. XX SQ Sequence 258 BP; 54 A; 54 C; 80 G; 70 T; 0 other; tcggctgtcg gcttgtaact tctggtcaga agttgagagg gggttcggct tttggacgga 60 tattggccag gttctggtcg gaacttgccc aaaaacggct gtatagcggg ccatggtcag 120 attttggtcg gaagttgaaa gttgaaatac tactaggtcg gaaccttgtc ataagtttgt 180 cggagtttgg tcggctttag tagcggtctt atccggaatc tgaccaacct ccgaccagaa 240 gttgccggcg acgcccga 258 // ID MARINER3_CB repbase; DNA; CBR; 698 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000003; DNA; KW MARINER3_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-698 RA Pavlicek A. and Jurka J.; RT "MARINER3_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER3_CB has a palindromic structure and is flanked by TA CC target CC site duplications. Similar to MARINER5_CE from C. elegans. XX SQ Sequence 698 BP; 198 A; 139 C; 152 G; 209 T; 0 other; ttaggttggc aggaaagtaa ctgtcccttg ttttatttgt gaataataca aaagcaggat 60 taatccaaga ttagcagtat gcaccgtcgt ggtccacgac atgttggcaa tgttcagata 120 acttgtggat acaatacctt caaaagccag ctagccgcga atcaaagtat tcattttttc 180 ctgtttttca cataaatggt gcaaattttc gtattctcta gatgaggttg tatctctccg 240 aatatccaat aatctgatag agctcagtcg ggactataag taggtgaggg agaacggtcc 300 cgctgaagct gctcaggtct gacttgactg caggtaaaaa atggaaaaaa cctcatgttc 360 acggaaagtc acgccgtacc tgagccgctt tggctggacg gttctccttt acccccgtta 420 aagacttgat tcagctctat cagatcattg gttattcaaa agtatacgac gtcatctgga 480 gcttaaggac tttaacacaa ttgatgcctg aaaaaatgga ctggagggat actttgactt 540 gccactagct ggcttttgga gggatggtac ccacaagtta cctgaacatt gccaacatgt 600 tgtggatcac gacggtgcat attgctaatt ctggattatt cttgtgtttg tgttatttac 660 taataaaaaa atggacagtt actttcctgc caacctaa 698 // ID MARINER21_CB repbase; DNA; CBR; 450 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000205; DNA; KW MARINER21_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-450 RA Pavlicek A. and Jurka J.; RT "MARINER21_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 88% identical to the consensus. CC MARINER21_CB contains 34bp-long TSDs and is flanked by 2bp CC direct repeats. Internal part bears translated similarity to CC mariner transposases. XX SQ Sequence 450 BP; 155 A; 87 C; 86 G; 122 T; 0 other; caatgccttt gacattttac aagtggtttg aaacggatcg gcttcaatag tattcttcaa 60 taggtccaag tccaactttc ggaccgagct tcgtcttccg attctaaatt tttggcttca 120 aatcgatcgg tccaatgctt gatggtaggg acagtaggag atccttcttc atctatttct 180 ttcattttct tgtgaatatc atgatttttt aaaccagaaa ggaataaaaa taaaatgaca 240 ttttgaaagt gtagacggta agggacgaaa gcaagcggca tgctcgcgaa cgacaagaag 300 taggaatgag gcaaaatgtg taaagcaagt ccgtgagata ctctatccaa caaaaaaaac 360 atccgccaag aaaaaccatc ccactgacca gatatgaatt ttcaaagttg agcattcaaa 420 atcgaaagaa acttatgcac caacctaata 450 // ID HAT15_CB repbase; DNA; CBR; 513 BP. XX AC . XX DT 31-JUL-2005 (Rel. 10.07, Created) DT 04-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE HAT15_CB - a family of nonautonomous hAT-like transposons. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000240; HAT15_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-513 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-513 RA Pavlicek A. and Jurka J.; RT "HAT15_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 5(7), 178-178 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 95% identical to the consensus. HAT15_CB CC contains 11bp-long imperfect TIRs and is flanked by 8bp target CC duplications. Related to HAT16_CB and HAT4_CE from C. elegans. XX SQ Sequence 513 BP; 167 A; 83 C; 99 G; 164 T; 0 other; catacttgtt cgggaaaatt ttttcgggaa ttcctgttcc cgaaaatttt cccgaaattt 60 tttttcgaga aatcgggttc ccgaaaaatt tcccgaaaaa tattttcggg aaattttgtt 120 cccgaaattt ttcccgaaat tattattcgg gaattttcgg gaaaatcggg aaaaatcggg 180 aagttggttt ttcagtgaat ttttgcctgt ttttctcaat ttatgttgag atttgtcgat 240 ttctttaagt ttctcaaaag tgtccaatga atttgcttgg aaaactattc aaaaagcaaa 300 aaatagttga aaatttgaga aatctagaaa aacaatgact ggaaaatttc ccgtttttcc 360 cggaatttcg tgaaaaaaaa tttcgggaaa attcccgtcg ggaaaaattc ccggaaaaaa 420 aattcgggaa aattcctgtc gggaaaaatt cccgaaaatt ttcgggaaaa ccgggaaaac 480 gggaatcccg atttcccgat ttgaacaagt ctg 513 // ID HAT11_CB repbase; DNA; CBR; 898 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000537; DNA; KW HAT11_CB; hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-898 RA Pavlicek A. and Jurka J.; RT "HAT11_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 4(11), 293-293 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC HAT11_CB contains 16bp-long TIRs and is flanked by 8bp target CC duplications. Related to HAT3_CB, HAT1_CB. XX SQ Sequence 898 BP; 233 A; 164 C; 112 G; 389 T; 0 other; cagacatgag cggaattatt ccttattcct tattccttat tccgggtgtt ttttctattc 60 cttattcctt attccttatt ccggatttta aatttttcat tccttattcc ttattccttc 120 ttccggattt tttaattgtt attccttatt ccttattcct gatatttttt ttgttattcc 180 tcttcaaaac tttaaaactt tttctatcaa aaatcagaaa aaaattctca aaactgggaa 240 aaaaatttga acgctctaaa ttgccgcgta aaattttgtt caacggagca cctttgcacc 300 gtttttcgaa aatttttttt tttggaaatc ttggaaaagt tatgcgtttt tctcagtgtt 360 tttttcgaaa taaatttggt ttttacaatt actaaatact tcagaaaaaa tgtctaaaaa 420 acggagcaag tttgacgaat tcttcgtcag aacagaaaac gagtgtatcg agcctcatct 480 gtaccccgaa aagaagccga ttgaataacg acactgttga caaattaact ttttgttcac 540 tcaatttgaa aaattatggc ctggaaaact gataattcac aattatgatt ttgtttttta 600 gttttttaat tctagtttga gagttccctc tccatttttc ttgtttgtgt ctcggtttgt 660 gagttctctc ttcgttgttc gtgttttaaa ataaacagtg tttttcaaga caaaaagaaa 720 tcttccttcg ttcggaaatt ctttcgttcc ttattcctta ttcctttttt attccttatt 780 ccggatttta aaattgttat tccttattcc ttattcctta ttcctgattt ttaaatttca 840 ttccttcttc cttattcctt attccggatt ttcaaaattt ttattccgct catgtctg 898 // ID piggyBac9_CB repbase; DNA; CBR; 457 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000290; DNA; KW palindromes; piggyBac superfamily; piggyBac9_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-457 RA Pavlicek A. and Jurka J.; RT "piggyBac9_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 94% identical to the consensus. CC piggyBac9_CB has a palindromic structure and is flanked by CC 4bp AT-rich target duplications. Similar to piggyBac5_CB, CC piggyBac3_CB, and piggyBac4_CB. XX SQ Sequence 457 BP; 139 A; 84 C; 86 G; 146 T; 2 other; ggcgcgtcca aagttcccaa atctgggatt tctgggccca gaaagcagtc caaagtgacg 60 cccagattcc caagatttcc aattgagcaa aatttgaacc agtgcgacaa tgtaattttt 120 tanttgcatc aaaatgtgca gaaaagcatg tagattcaca taaaaataaa taaaatattc 180 aaaaaaanat tccttcattg agaaaaacgg catcgaaaaa tgattttttt ttttcggata 240 agagccctgg cgtttttctc gatgaaggaa ttttttttga attttttctt tatttttatg 300 tgaatctaca tgcttttctg cacattttga tgcaataaaa aattacattg tcgcactggt 360 tcaaattttg cccaattgga aatcttggga atctgggcgt cactttggac tgctttctgg 420 gcccagaaat cccagatttg ggaactttgg acgcgcc 457 // ID MARINER54_CB repbase; DNA; CBR; 1035 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000004; DNA; MARINER54_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-658 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1035 RA Pavlicek A. and Jurka J.; RT "MARINER54_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 325-325 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC MARINER54_CB is related to MARINER50_CB. The consensus contains CC 119bp-long TIRs. MARINER54_CB is flanked by 3bp target CC duplications TNA. C|TNA|G insertion motif. XX SQ Sequence 1035 BP; 344 A; 172 C; 182 G; 337 T; 0 other; caagggaacc atgtttagcc ttcatctcag aattttttct aaatttgctc atttatagtt 60 tcaaatacgg gctttctttt gatgtatttg gttttctgca caaatttcta gaagtcgagt 120 tatgggctgt ttaagtgatt tcagtactaa tttctcactt ttggagtgag tttttgaaag 180 ggttaatggg agttttttgg cattgtttga gtgtcaatcg caattttaaa ggtttctcta 240 caatctgaca aagtttcctc atttttcaaa aaaaaaattt ttttgaaaaa atttttgcca 300 tgggtaccct ttgcgaaatt ttcaattttt cgaaaatttt ttaaatgtgc taaaatgaat 360 tctaaacgca taaaaatgat aaaatgagtc ttttcacaag attctgtagc ctatatccgt 420 tttgaaatcc gaaataagtg atttcttcca aaactccaat gaatcgtagt ccttcgaaaa 480 tcacccaata gcactcaaat attgtgaaaa catagattta catacttctt gactgattta 540 taacagttcc gcaaccaata tgatcaaata gggggatttc gactgacatt ttgagtagat 600 aaggcttttc agcagtgctt caagaatttt tcagaaatta tctttttcga gcttttttcc 660 tactgaaata atagagcaaa catagttttg attttcgaaa agttcaaagc attcctccaa 720 catcaaaaaa aaaaaagaaa aaagaaaatg gacagtgacg gaatcgaacc ccaaacttgt 780 gattactatt catccccact atccactcgg ccactgttgc tcgtttcttc cacagtggag 840 aatgtataga ggaaaggggg gaaagtggaa gggaaggagg agaccaaaaa aacagcatat 900 tttcagatgg acttttctcg gcttctagaa atttgtgcag aaaaccgaat acaccacgag 960 aaagcccgta tttgaaacta taaatgagca aatttagaaa aaattctgag atgaaggcta 1020 aacatggttc ccttg 1035 // ID GYPSY1-LTR_CB repbase; DNA; CBR; 296 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE GYPSY1-LTR_CB is a long terminal repeat of the GYPSY1_CB LTR DE retrotransposon - a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; KW GYPSY1-I_CB; GYPSY1-LTR_CB; Gypsy clade; LTR; RNase-H; gag; KW integrase; mag lineage; protease; reverse transcriptase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-296 RA Pavlicek A. and Jurka J.; RT "GYPSY1_CB - a young family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 226-226 (2004). XX DR [1] (Consensus) XX CC GYPSY1-LTR_CB Copies are 99% identical to the consensus. CC Flanked by 5bp-long target duplications. GYPSY1_CB is related CC to GYPSY21-I_AG, GYPSY3-I_AG, and GYPSY18-I_AG. Last 24bp code CC for N-terminal part of the gap-pol polyprotein. CC The internal sequence is listed as GYPSY1-I_CB. XX SQ Sequence 296 BP; 75 A; 78 C; 51 G; 92 T; 0 other; tgttgcagac tatgcaaacc ttcattagtt ttataagttt aatatccgcc ttagtttgat 60 ctacccaaag taggcgcgcg caataaccac tgtttgtgct aattgtcatc acgcgcgtaa 120 ctatttgttc ccttggtcag aactcctaga taaaggggct gatcattctg atactctctc 180 tcctgcccca aagtattctg ttgtccccta ttcactgaat aaagtcctta ttcatctact 240 actcacatac tgtctggctg gtggttcaca caatgccgcc accaggagac acaaca 296 // ID DNA2-19_CB repbase; DNA; CBR; 1085 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000202; KW DNA; DNA2-19_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1055 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1085 RA Pavlicek A. and Jurka J.; RT "DNA2-19_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 96% identical to the consensus. DNA2-19_CB CC contains 33bp-long TIRs and is flanked by 2bp target CC duplications. XX SQ Sequence 1085 BP; 360 A; 166 C; 222 G; 335 T; 2 other; ctcagcactt tcaatttagc aaacagcggc gaaaaagggc tttttcagaa aacgggggtg 60 aaccactgtt ccgagagtta atcatcgtgg cgagaccaag aaaagtggtg aaaccgtggt 120 ggatagagag tttttcagta aacagtggtg aatagaaatt tttcaggaaa canggggtga 180 atgaaaaaan caccctacct ttgaaaactt atgttttttt ttgaataatt tttcacatgt 240 tttatatttg ctaatttcgc ttataaattt gaggactatg ttttagagat atttaaagaa 300 gaatgcgaaa aaggtaagaa gaaattacca ataatattat aactatttag aaatcgaact 360 catagccggg aaatggcagg actaaaagaa ttgtttggag taattttatg ccaagattct 420 gaatgaagtg agcaaatttc aaacttatat ggatacgaaa atttggtttt accgagaaag 480 gaacttgtct ggtcaaaaaa tttatggaat attctatata cttcagaagt tttctaagtg 540 taagtagcta aacaacaccg gtaatttggt aactcatatg atctttttcc agcaaaatgt 600 ccctaaatat agtgagtctt ccttaaaaac gtcgagattt tacaagtcac tttgatgcca 660 tactttgtct gaagatttgg aagtgcgcat atattgcttg ataacgtcct atcaaatgaa 720 gatgtaggtg atattaaccc tatttacgct aattttatgt ttttcagagg aagaagacaa 780 atgattgatt gtgggagatg gaaagttcga acagaattat gccgcaaaga gctgtagtcc 840 gatcaacagg ctgctaaata attgaacttt cattaaaatt tcaataaatc tttttttagt 900 cattctactt gattttgtgt ttttttttca atggaataaa gtcgaaatgc aaagaaaagg 960 ggcgggcaag cgcgctcgag ggcacctcca aaacttagga aacagtgtga caacttagtt 1020 ccgccagagt ttcgccactg tttcgccacc gcttcgccgc tgtttcctaa attgaaagtg 1080 ctgag 1085 // ID MARINER15_CB repbase; DNA; CBR; 1566 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000262; DNA; KW MARINER15_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1566 RA Pavlicek A. and Jurka J.; RT "MARINER15_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(4), 112-112 (2004). XX DR [2] (Consensus) XX CC MARINER15_CB copies are >98% identical to the consensus. CC MARINER15_CB contains 201bp-long TIRs, flanked by TA target CC duplications. The central part similar to an incomplete CC transposase. CC MARINER15_CB_ORF: 293-827 (178 aa) CC MPRATHLSDSERAQIDAFKTAGWSNRRIAARLGRSFNCINTFVNNPDHYETNKKSGAPKKLTDRDTRSII CC RLASNSMKSCNDIKNELKLDVSKSTVWRTLDSNQNIVRAKLMSAPMLTDAHKANRLQFARNNMATDWDKV CC WNAFEIITYAVFYYRSSSAMKKSSIWTGRTASTVTGTT. XX SQ Sequence 1566 BP; 452 A; 331 C; 339 G; 444 T; 0 other; cagtgcgttt cataagtata ggttcaccct cggtagacaa ggtgggaaat cttggaggtt 60 tggggttgtt ataatattaa agtccatgta aaaatacata tcgcccacaa tttttagacc 120 gctactacaa aaaataaatt ttttatgtca gaaaaagtct tttttttgaa aaacgagcgt 180 ttcataagta taggttcacc cttgaaaaaa attacagttt cacataggtg ataacttttt 240 aactattttt actgttttta actatttttg cgtcttttac ttcgtttttc ttatgccgcg 300 agccactcat ctctcggatt cggagcgagc tcagatcgac gcgttcaaaa cggctggatg 360 gtcgaatcgg cgcatcgcag ctaggttagg acggtctttc aattgtatta acacgtttgt 420 taacaatccg gaccactacg agaccaacaa gaagagcgga gctccgaaaa aattgacgga 480 tcgagacacg agaagcatca tcagactggc atccaattcg atgaagagct gtaacgacat 540 aaagaatgag ctgaaactgg atgtgagcaa gtccacggtc tggagaacac tggacagcaa 600 tcagaacatt gtccgagcca agttaatgtc cgcgccgatg ctcaccgatg ctcacaaggc 660 gaaccgactt cagtttgcaa ggaacaacat ggcaactgat tgggataagg tatggaatgc 720 ttttgaaatc atcacttatg ctgttttcta ttacagatca tcttcagcga tgaaaaaaag 780 ttcaatctgg acgggccgga cggcttcaac agttactggc acgacctgaa gaaggatccc 840 ctccatttct ccaagcgtaa cttcggtggt ggtcgtctta tggtctgggg agcattctct 900 tctgccggta ctgtggattt ggcgttcgtc tccttcagaa tgaactcgac agactatcag 960 gatgtcatga ctgccaaact gatcccatat cttcgccgtt ttcatcggcg tcagctcaca 1020 tatcaacagg acaatgcttc gattcatgcg agcagatcga ctttggactg gttcaagtcc 1080 aaaaaaatca aggtgatgga ttggccggct tgttcgccgg atttgaaccc aatggagaat 1140 gtttgggctg aactcgtgcg cgtcgtatat ggtcagggaa agcaatacca gaccgtttct 1200 gagctccaaa ctgccatcgt ggacgcatgg aagaacctga agaagcctta cctccagaag 1260 ttgttaaatt ccatgccaaa ccgcttgttt tctattattt ccactggtgg aaagcccaca 1320 aagtattgaa ttgaataaaa ctttgttaat gttaaatttt ccgggggtga acctatactt 1380 atgaaacgct cgtttttcaa aaaaaaagac tttttctgac ataaaaaatt tattttttgt 1440 agtagcggtc taaaaattgt gggcgatatg tatttttaca tggactttaa tattataaca 1500 accccaaacc tccaagattt cccaccttgt ctaccgaggg tgaacctata cttatgaaac 1560 gcactg 1566 // ID DNA8-1B_CB repbase; DNA; CBR; 1129 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.02, Created) DT 08-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Caenorhabditis briggsae subfamily of DNA transposons - a DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000462; KW DNA8-4_CB; Interspersed repeat; DNA8-1_CB; DNA8-1B_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-346 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1129 RA Pavlicek A. and Jurka J.; RT "DNA8-1B_CB - a subfamily of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (07-MAR-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~90% identical to the consensus. DNA8-4_CB CC contains 10bp-long TIRs and is flanked by 8 bp target CC duplications. Sequence variant of DNA8-1_CB. XX SQ Sequence 1129 BP; 357 A; 200 C; 207 G; 365 T; 0 other; gggttccgaa tttgaaaaag catgatgagc ttttacgtga aaatgagctt ttcaaatagc 60 tcattaaggc tcatttgatt ttgaatgagc tttttgaaaa aataaaaaag ctcacgcgac 120 tcttttttag ttttatcgaa aagctcatca aggctcatga gcctttctgt gatttttatt 180 aagaagctca tatggctcat cataaataaa caaagaaaag aaatcagaaa aaaatcattg 240 aaatcatgga aaaatcatga gtggccatgg aatactctaa atatcaagtc atttctaggc 300 cattttaaca aggtggccta ctattgcatg ttgagttccc tagggcacct attctatggc 360 ctaaaaatgt tataacattc acctgatacg ttttctaagt cattttaacg aggtggccta 420 gaaaactcaa ctgtcaaaag ttaggccacc atgtgaaaat atcttagaaa acataacagg 480 tgaatgctac acgatttctt cgacataaaa atggttgcct aaagaactca acaaggaata 540 gataagccac tgtgtcaata tagactagaa aacatattag gtttatgcca gaccatttct 600 gtatcataaa acttgatggc ctagaaaact cacttgcaaa agttaggcaa ccaagtgaaa 660 atggcgttga aatcgcttga tattcacctg atatgatttc taggctattt tcacatgatg 720 acctaatttt tgcaagataa gttttctagg ccgccattgt ttttttcagg ccactatcgt 780 ttctgcccat caggtcactt gattagttga atatttggct aaagtgtttg ttgatattat 840 tatttttgcc acgtgaacac ttttccagtt cattttttga actatgcttc cgtgagcctt 900 ttttttgaaa aagagtcgac gtgagctttt ttgcaaatga gccttgatga gcttttatca 960 aaatcaataa ttacgtcaaa tgagcctcga tgagcttttt tcaaaatcaa tattttcgtc 1020 aaatgagcct gtatgagctt tgacgtggag tcgaaaaagg ttcgtatgag cctgcttcat 1080 gatgagctca cgtgagctta agctcatgac tgagcttttt tcggaaccc 1129 // ID Mariner-N1_CB repbase; DNA; CBR; 155 BP. XX AC . XX DT 31-MAY-2005 (Rel. 10.05, Created) DT 31-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Mariner-N1_CB is a nonautonomous DNA transposon that belongs to DE the Mariner superfamily. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Mariner-N1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-155 RA Kapitonov V.V. and Jurka J.; RT "Mariner-N1_CB, a family of nonautonomous Mariner transposons in RT the Caenorhabditis briggsae genome."; RL Repbase Reports 5(5), 123-123 (2005). XX DR [1] (Consensus) XX CC Mariner-N1_CB is a family of nonautonomous DNA CC transposons that belongs to the Mariner superfamily. CC previously in the C. elegans genome. Mariner-N1_CB elements are CC characterized by 27-bp terminal inverted repeats and TA CC target site duplications; they are >95% identical to the CC Mariner-N1_CB consensus sequence. XX SQ Sequence 155 BP; 44 A; 34 C; 29 G; 48 T; 0 other; ttatgcttgt ctgagaaaaa aaaggttgag acgcagagaa aaagtgtctg cgtctccacc 60 gtttgtgtgc tatttaggct ctccgcttcg atatcgctac cgtattcaga ctgcaaaaaa 120 tactctctaa cctttttttt ctcagacaag cataa 155 // ID DNA2-5_CB repbase; DNA; CBR; 349 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000048; KW DNA; DNA2-5_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-347 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-349 RA Pavlicek A. and Jurka J.; RT "DNA2-5_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 85-95% identical to the consensus. CC DNA2-5_CB contains 130bp-long TIRs and is flanked by TA target CC duplications. XX SQ Sequence 349 BP; 108 A; 69 C; 67 G; 105 T; 0 other; ttattctggt acaacaaaaa atcggagctg tggaagagaa acgccggtgg ccgtggccga 60 aggtcccaca acgacaacta ccgtaaccta aaaatatttt tattttccgg atttattttc 120 tcgtttttca ctgcttttcg tcgagttttc tgttattttt cccccaaaaa agtcggaaaa 180 taaaaaaatt tttgatagtg aaaaaattga ctgaaaacgc acgaaaatcg agaaaataaa 240 tccggaaaat aaaaatattt ttaggttacg gtagttgtcg ttgtgggacc ttcggccacg 300 gccaccggcg tttctcttcc acagctccga tttttttgta ccagaataa 349 // ID piggyBac8_CB repbase; DNA; CBR; 940 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000284; DNA; KW piggyBac superfamily; piggyBac8_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-940 RA Pavlicek A. and Jurka J.; RT "piggyBac8_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC Contains 24bp-long imperfect TIRs, flanked by TTAA target CC duplications. XX SQ Sequence 940 BP; 330 A; 160 C; 179 G; 271 T; 0 other; aggagggtag acatcaaaaa tttcaaaatt ttcattttta ctcaaaagat ataactctga 60 agtataaata tagctatgta cttaaaaacc tgaaaaaaac acttcaagga cgaaaaaatg 120 ctcttttttg tcaccctaat ttcttcacta gcttgctgct gcggcgtcgc ttcataatgt 180 gaaaaacgcg atggtcgcct cttacacgcg tagtgtagtg ggtacgctct aggctagtat 240 tcaggaggtc agaggttcaa tccctgctgg tgtttttact tttttcttcc cttgtttcct 300 tcggattgaa ctttttgaac tcggaatttc tgaagggcta ccagcgtgcc gccgaggcct 360 cgctccgagg taccaaaatc agttgaaaat gaagaaactt gttttattat gttaacaaat 420 aaattatgaa aaaaactaca attaattttt agaaagagac ataacaattg aaaaaaaaac 480 cacataatta aaacaatcct cgtgcagggc tggtcgtcgg aaggtgaagg aagcagtaaa 540 aatggagacg tctctgaaaa ccctagtcat aaaacagttt tttattccta gagtaataac 600 gagaagtaat gagataaata ggaacagtga agaaacggtt atcgaagaga aaatagtttt 660 tttcgcatgc ctataaaaaa caccggcgac tggcaaaata atcggtcgat agaactttaa 720 atttacataa aaaaattcac ttttatatgg gttttataat aaataagaaa aaagagcttt 780 tttaatgttt gaagtcgtta aaaattgaaa aaaataaagt cgggaaataa aaaaataaaa 840 atgtttgcgc gtgggattgc gtgctttagg tgcgaacacc gcgacggcaa aatacacatt 900 ccctgaaatt ttccccgaaa tttttgctgt ctgccctcct 940 // ID DNA8-10_CB repbase; DNA; CBR; 262 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA; KW DNA8-10_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-262 RA Pavlicek A. and Jurka J.; RT "DNA8-10_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(5), 213-213 (2006). XX DR [1] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 93% identical to the consensus. DNA8-10_CB CC contains ~70bp-long TIRs and is flanked by 8bp direct repeats. XX SQ Sequence 262 BP; 55 A; 68 C; 75 G; 64 T; 0 other; gagaccccgc aaattccggg gaaagaaaaa accggggaaa aaaaatcggg gaaaagtggg 60 cggagtcggg ggcggagcct aaaatgcaac cctggcacgg ttttgccgca cggtttttct 120 gcacatttgg acacggtcat gagggggcgg agcctaaatt gcaaccctgg cacggttttg 180 ccgcacggtt tttctcgact ccgcccactt tccccggttt tttttccccg attttttttt 240 tccccggaat ttgcggggtc tc 262 // ID HELITRON3_CB repbase; DNA; CBR; 1638 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000167; DNA; KW HELITRON class; HELITRON3_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 382-1537 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1638 RA Pavlicek A. and Jurka J.; RT "HELITRON3_CB - a family of nonautonomous HELITRON transposons."; RL Repbase Reports 4(10), 270-270 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. HELITRON3_CB is flanked by TC-CTGG termini. CC The central part contains long minisatellite-like repetitions CC of the TTTAAAAT motif. XX SQ Sequence 1638 BP; 568 A; 280 C; 244 G; 546 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgtgtgt gtccggtgtt cccggttctg 60 agaccgtagc gaactcacca ctggaccaaa atttcccaaa ttttcacaga tgacccgaaa 120 tagcagcgag atgatgcccg tctattttaa attttcgata ttcgattttt gacgtcttct 180 ggatatgatc ttctacttct acagtgcaaa tctttagaaa ttattttcac gccattcccg 240 cccatccccc tattttttcc cctatccacg ttatatcaaa caaaaagatg attttgtgcg 300 aagagatatt cagtctgggt tctgaagatt taaaagtatc taaaaattat gataagaaat 360 cagagaaaaa tacaagctcc ctcaaagatc aatacgaacg cgttcaatgt agtctttgaa 420 cttcttaggc tttaagtttt aagaaattaa aatctttcga atttcgaagg ttttgaattc 480 ccaaattttc caaatttttt aaatgctgaa actatagaaa cctggatttt tagaactata 540 aatttccaaa ttccaaaaga ttaaaatgtg tgaattttcg gatcgaaaaa ttcaaaattt 600 taaaatttta aaaataaccg caaatcagaa attcctgaat gcagaaatgc agaaattcgc 660 aaaaatcgga aaatctgaag atcagaaagg cagaatctca aaaaaaaaat cagaaaccca 720 gaaattcaga aattaagagt ctcaaaaaac taaaatttct gagattaaat tcttgaattt 780 cagaaagtcc taatttggta attcggaaat tcgaaaaacc aaaaatcaaa acttcagaat 840 cttaaaaaaa atcagaattt cagaatttca gaacttcaga aactcagaaa ttaggaaatt 900 cgaaaaatca gaatttctga atcatgaatc cctgaatttt caaatttgtg aactgctgaa 960 tttctgaacc tctgaacttc ttttgaaaaa tttaaaaact tcctaactcc taagtttctc 1020 tgaaattttg agtttttgaa ctttttcaat tctgaactca tgaaattcga tttttagatt 1080 ttttttttcg aaattttgtt cccaaaattt ttagtcgctg ttttgaagtg aaacgatttt 1140 ctggatttca aattttaaga gctaaaaaat ttccgatctt aattatgaat ggctttatag 1200 gctatattcc tgaatttgcc aaaaatttgc aaaattggtt ttgggatttc agaagtttca 1260 gatttgtaga atttctgaat ttcagaattt tagaacttct aaatttgcga atttgagagt 1320 tacagaagtt ttgttagact tatttccttc atcacaatgt ctaagcttat atgcattaaa 1380 aacacttttc attaactgac ttttcgaatt ctcaaaaatt caaatctcct catatccgag 1440 atgttaaatt ccgaaactac cgagatcctg agtttccaaa aaatcatttt cttaagctca 1500 aaatttccta attttcgaat ttgtgagcat aggccctaaa aaatagcccc tgtaaaagtg 1560 acggactctc tttattagat tacgggtatt gtaagcgggg ccaggaggtt tagccccgaa 1620 ggggcgtaaa ccgactgg 1638 // ID MirageN1a_CB repbase; DNA; CBR; 1114 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 21-MAY-2011 (Rel. 9.06, Last updated, Version 2) XX DE MirageN1a_CB is a nonautonomous DNA transposon that belongs to DE the Mirage superfamily. XX KW EnSpm; DNA transposon; Transposable Element; Nonautonomous; KW nonautonomous DNA transposon; Mirage superfamily; MirageN1b_CB; KW MirageN1a_CB. XX NM MirageN1a_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1114 RA Kapitonov V.V. and Jurka J.; RT "MirageN1_CB, a family of nonautonomous Mirage transposons in the RT Caenorhabditis briggsae genome."; RL Repbase Reports 4(6), 187-187 (2004). XX DR [1] (Consensus) XX CC MirageN1a_CB is a subfamily of MirageN1_CB nonautonomous DNA CC transposons that belongs to the Mirage superfamily detected CC previously in the C. elegans genome. These elements are CC characterized by 15-bp terminal inverted repeats and 2-bp CC target site duplications, they are over 97%identical to the CC MirageN1a_CB consensus sequence. This consensus sequence is CC 87% identical to the MirageN1b_CB consensus sequence CC representing the MirageN1b_CB subfamily.MirageN1a_CB and CC MirageN1b_CB are nonautonomous transposons whose autonomous CC counterparts were relatives of Mirage1_CB. XX SQ Sequence 1114 BP; 350 A; 210 C; 224 G; 330 T; 0 other; cacaggtgat tcgtgattga ccaattacag aagaagggct ataatcgacc caattactta 60 tctaccgcga acgagaggtt ctacaattga ccattcgcga gcaaaatgcg tatcttacta 120 actggcccta taaaaggtcc acaattgacc aatcgcgaaa aaattcttgt tttttatttt 180 ccgaacttct ttttcctatt ttggatactt tacttctttt ttcgccgttt tcttcgcaat 240 ttttgtccgg aatctattaa ttaacatata atactatact agaatactgt ataaccaaga 300 atgtatcgtt ttgtttgcag aaaaatagag aaaatggccg gaagacaaaa gtcggaagca 360 agaagccgaa atttcgaaaa actctggaag aagcattgct tctgtacttt caaaaggtaa 420 gaagcgtcca gaaagtccga atttttaatc taatttttac agggtgccag aaaatctcaa 480 ttttcctgta tgtcgactgg gcactccgga aaaatgcaac tgagaatgag gaaggaaaaa 540 gttctggaac agtgggtaaa tttgaaaacg aatatcagag aaaaaagttg atttcagacg 600 gaagtgttaa gttcgcggat ttcgaaaaaa tttccagtcg ataacttgtg tcagaggtat 660 agtacaaaaa gaattgggag cttaaaatct agataattca tttcagttac ttcgaaacaa 720 caatcaacat catcttctgc tcatcgtcat cgactgaggc aaaaatggac aaaacgagaa 780 gctccgatgc cgtttcagcc agttcgacaa cagcggaaga gaataatata acttttaatt 840 aattgttttt tcgcttttca ttgttttttc tgtgtaataa acaattttta gcagctgcta 900 gcttccagat tcgaaacaat atatgccaat tattgctctc gcgacaagcc aattgtagga 960 gatttgctcg cgatagggcg aatattggtc gtttgcggtg gcgcgttcgc gattggtctg 1020 taaatggcct gcggcaggca tgttccgatg tacccatggc gactttccgc gaacaatatt 1080 tcacctatta tagacgctgc gcgaatcacc tgtg 1114 // ID MUDR4_CB repbase; DNA; CBR; 1801 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000415; DNA; KW MUDR superfamily; MUDR4_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1801 RA Pavlicek A. and Jurka J.; RT "MUDR4_CB - a family of nonautonomous MUDR-like transposons."; RL Repbase Reports 4(8), 214-214 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC MUDR4_CB contains ~530bp-long imperfect TIRs and is flanked CC by 9bp target duplications. Related to MUDR3_CB, MUDR5A_CB CC and MUDR5B_CB. XX SQ Sequence 1801 BP; 566 A; 322 C; 324 G; 589 T; 0 other; ggctcagtat ccaagggtac atcagaaaag ggtacatcga gatcttaggg tacattggat 60 cagagggtac atcagatctt agggtacatc tgggaggtag gttcaagggg tacatctcat 120 ggtggttcta agggtacatc agggaaagga tcccagggta catcgaaaag ttcttagggt 180 acatcaatca aaaatactgt agttttccac tggaagatat tttggtctaa actgcaccat 240 tttatttatt tttttgtttg tatttgtttg aaaattacca ttttttcata gttttatgga 300 ttgatagatt ttttgaagtt tgttttaaag gagcttatta tactgaaatt ggcaatagga 360 aacaagtcga aaacttgata tttatcagaa cgaactttca accaaaacca catttcaaat 420 gtgccaggac aggaagcatt ataaatttga aaaaaatcca aattctttca aactcttcgg 480 atttttcgga aacataatga tacaaaatcg ttaaaaagac tacgaaatga attttcaagt 540 acacaaaaac agaacatttg ggtctggtcg aacttgaact tgcgactgca gatttccgtg 600 cacgcaaaca caccactaga ccactttgcc aattttcgct tcgaccacca caacccgtac 660 atttcggtgg tttctaaagt aaaaaggagt gcggaagaaa gcaataattt tcggaaggtt 720 tttcagacaa ggaatgaaaa tgagcactgg ctagtctaaa cttctgaaaa ttatgactga 780 actactttta gtttcgctgt cctatttttg caggtgtcaa aatctgtgga gacgaaacga 840 aaatcaatga aaattcatga attccgaatt ctaacatcaa aactgggtaa acatcctaat 900 ttggtccacc gaaatcagaa atcagtcgga aaatatctaa tatttgtctg aaaaattttt 960 tttagaccag gttctcgatt tcattccggt gacgtttcca atcgctcgcc tctgtatttt 1020 atctttcaaa aacatttttc atgtaaaaaa tgtgattttt ttctcaaaaa tgtgtctttc 1080 actatttttg tatttgaatc cctcgaaatt cagaattttc aacggctctt ttcaggtctt 1140 aattatgtac gggttgtggt ggtcgaagcg aaaattggca aagtggtcta gtggtggtgt 1200 gcgtgcacgg aatccgagtt caagttcgac cagatccaaa tgttcttttt tgtgtacttg 1260 aaaactaatt tcatttcgta gtctttttaa cggttttgta tctttgtgtt tccgaaaaat 1320 ccgaagagtt tgaaagaatt tggatttttt ttcaaattta taatgcttcc tgtcctggca 1380 catttgaaat gtgtttttgg ttgaaagttc gttctgataa atatcgagtt ttcgacttgt 1440 ttcctattgc caatttcagt ataataagct cctttaaaac aaacttcaaa aaatctatca 1500 atccataaaa ctatgaaaaa atggtaattt tcaaacaaat acaaacaaaa aaaaaaataa 1560 aatggtgcag tttataccaa aatatcttcc agtggaaaac tacagtattt ttgattgatg 1620 taccctaaga acttttcgat gtaccctggg atcctttccc tgatgtaccc ttagaaccac 1680 catgagatgt accccttgaa cctacctccc agatgtaccc taagatctga tgtaccctct 1740 gatccaatgt accctaagat ctcgatgtac ccttttctga tgtacccttg gatactgggc 1800 c 1801 // ID MARINER22_CB repbase; DNA; CBR; 2141 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000210; DNA; KW MARINER22_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2141 RA Pavlicek A. and Jurka J.; RT "MARINER22_CB - a young family of nonautonomous DNA RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC MARINER22_CB contains 24bp-long TIRs and is flanked by TA CC target duplications. The internal part bears similarity to CC TC2 and MARINER23_CB. XX SQ Sequence 2141 BP; 605 A; 479 C; 344 G; 713 T; 0 other; ccgtaaaatc tgtattgata ttgcatgcaa gtctattgtt caagtcacct caaggggtgc 60 aactctatta gaggggcaat tcaaatagag gctgcaattc tatttttcaa actacgaaaa 120 ttttgaaaaa aaaagtttta ttatgaaaat caacaaaaaa gtaacaaatt gaacacaaca 180 aaaggaaaat attcaaaaaa ttgaggcgtc actgtcatag ttattgtctt cttcctcggc 240 atggttcatt tctccatcgt cttcctcaat ttcaatatct cccaaaatct cctgaatttc 300 ttccatttct cgttctgctc gtcttgtctt caataactgt acgccttctg gaatttctcc 360 atctttcttg aaacaatgaa ttgcctcatc atcttcgcca tttcttccat tttttaatcc 420 gcatcctttg aatgatctta caatgtattc cttcgggata ttttcccacg ccaattgaat 480 ccatttcaaa taaacttcca tactgggagc acgcatattt cccgccgggg tgaacgattt 540 cgttccatga accatccaat cttcgtactc ttttctgatg aaagatttaa acattgcgtt 600 ccaatataca tctggagcct gaaaaatcgg gtcacgcaaa gtttcaataa aatctactca 660 cttgtaagaa ttttgtgcat cctccaggaa tcaccgcagt gtctagtctc agttgtttca 720 atactttttt agtgtctgta ctgatgtggc aacggtaaga gtcccatact aacaaccttt 780 ttccgaacat tgagtgaccg agaacttttt caagaaaagt ttttgtgatt tcatcgttga 840 aaaatgttct gtcacaccaa accaactgca aagtttttct aaatgtttcc tcaatacttt 900 gcactggtct ttttcttgga agaagtacaa aaggtttgca cttaaaaccg tctgatcgag 960 cgcacagcat tactgtaaca tgcaatttct cgtgtcccgt ggttttcact gaaacctgaa 1020 attgaaacgt ttagcttgtt atttttgagt gtgctgactt gtttagatcc tcgatccgct 1080 acagtcaaac tattcgaaca atccagataa accgccgtct catcacatgc gaaaattttg 1140 tcataattat tcatggtaat taatcgttcc acataaagga gaaagtcaat aattttctcc 1200 acataaaact ctggcggttt ttgacagact gttgtagcac gtctactcga aaatccatgc 1260 cgcttcaaaa aagaaaccag ccatccattc gagaactgca acatttaatg tttaatctca 1320 agtaggtaat ctgttttcaa accttcatat cactatttga aatagacttg gcgcgattct 1380 ggattccaat acgagtaata cgaagctttt tttctctttg ctctcggacc cattccgcaa 1440 gtttagtatc aaaatcttta tcattcactt tacgccctgc gccatcaagc cgttttttct 1500 tttttccatt ttcagcgatt gttgctatta ttttttcttt ctgagctctc cattgttgca 1560 cattttgtct tgaaactcca aatttcttag ctgcttccgt gttatttttt gattctgccc 1620 atttcaccac cgtaagcttg taatccaagg ggtgggctcc acgctttctc tttctagagt 1680 ttccaccaac tttttcaacg tcttccacgt cttccacgtt ttccacgtct tccacgtttt 1740 ccacgtcttc cacgtcttcc acgttttcca cgtcttccac gtcttctacg ttttccacgt 1800 cttcgaggac ttcttcagaa ctcattgctc gtgttgctcg cttcaataaa tggaaaatat 1860 tgttaaaaaa acaaagaaaa ataaaaataa atcagaaatt aagtaggtag tttaaaaaaa 1920 aagaaattcg aaaaacaact gtgcaattgt tcgtcacggt gtcacagact aaaaattgca 1980 cagtactccc ggcggagccg caattctgct ggagatgcaa ttgtattacg ggggcaattc 2040 aattaaaggc tgcaagtcta tttttcaagt gccctcaagg ggtgcaagtc tattagaggg 2100 gcaattcaaa tagaggcgca atatcaatac agattttacg g 2141 // ID TCB1 repbase; DNA; CBR; 1616 BP. XX AC X54217; XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 15-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae TCb1(#5) repetitive element. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000450; DNA; KW TCB1; mariner/Tc1 superfamily; transposase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-811 RA Harris J.L., Prasad S. and Rose M.A.; RT "Isolation and sequence analysis of Caenorhabditis briggsae RT repetitive elements related to the Caenorhabditis elegans RT transposon Tc1."; RL J. Mol. Evol 30(4), 359-369 (1990). XX RN [2] RP 1-811 RA Harris L.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (19-NOV-1991). Harris L., RL Agriculture Canada, Plant Research Centre, Bld. 21, Central RL Experimental Farm, Ottawa, Ontario Canada K1A 0C6. XX RN [3] RP 1-1616 RA Pavlicek A. and Jurka J.; RT "TCB1 - a family of autonomous mariner/Tc1-like transposons."; RL Direct Submission to Repbase Update (AUG-2004). XX DR [2] (Consensus) XX CC The TCB1 family is young and copies are 99% identical to the CC consensus. CC TCB1 contains ~80bp-long TIRs and is flanked by TA target CC duplications. CC TCB1_ORF: 529-1347 (273 aa) CC MDRNILRACREDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLKNRKARVEWAK CC QHLSWGPREWANHIWSDESKFNMFGTDGIQWIRRPIGSRYAPQYQCPTVKHGGGSVMVWGCFSDTSMGPL CC KRIVGTMDRYVYEDILENTMRPWARANLGRSWVFQQDNDPKHTSGHVANWFRRHRVNLLEWPSQSPDLNP CC IEHMWEELERRLKGVRASNANQKFAQLEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY. XX SQ Sequence 1616 BP; 478 A; 341 C; 318 G; 479 T; 0 other; cagtactggc cataaagaat gcgacaactt gttttttgaa gataactttt tgaaaactca 60 acttttcaat ccgaattttt ggtaagattt tttcagcact atcaaaaact tttaggctaa 120 gttggtttta atattctgct acaatttttt tgaaaattaa tttttttcga aaattcatga 180 aaatgacatt tttggagatc tatacaaaga agctcaagaa acaccggagg tcaaaaacaa 240 aataaaggta acaataaaaa gtgatttaat atttcgttgg gtatcctttc gcatcgataa 300 cagccttgca tctacgtggc atcgactcca ggagcgtctg aaccaccgtc atcgggatac 360 tcttccaagc agcttcgagt tgagcaaact tttgattggc attggatgct ctgactcctt 420 tgaggcggcg ttccagctcc tcccacatat gctcgatggg attcaagtct ggagattgac 480 ttggccattc taggaggttc acacggtgac gtctgaacca attggcgaca tgacccgaag 540 tatgcttcgg gtcattatcc tgttggaaca cccacgatcg gcccaaattt gctcttgccc 600 atggtctcat tgtgttctcc aggatgtctt cgtacacata tcgatccatg gttccaacga 660 ttctcttcaa tggtcccata gaagtgtcgg agaagcatcc ccaaaccatc acagatccac 720 ctccatgttt cacagttgga cattggtact gtggagcata cctggagcca atgggacgtc 780 gaatccactg aataccatca gttccgaaca tattgaactt cgattcatcg ctccagatgt 840 gatttgccca ctcacggggg ccccaggaca agtgctgttt agcccattca acgcgagctt 900 ttcggttttt caaactgacg agtggttttt tgactggtct tcgtccgtgc agtccagcaa 960 cttgcaaacg tcttctaata gttcttctcg atggtaccgg ttcatttgga gacgtcacag 1020 aaagttgaat atccgtagat gtgcgtctag gatcttctcg gcatgcgcgc aaaatgttcc 1080 gatccatatt tctggaagtg gttcggggtc ttcctggaga ttggcgatga acaacgccat 1140 tctaaattgt taaatttagt tgagaaagct gattgaaacc tcacatcatc tcgatttttc 1200 ttcagaatac ggtaaatttg gctggaagaa caactaaact gagttgcaag tatcttcgga 1260 tgcgcgccga gttcatgacc acgcacaatg ctttttcgct cgtccacaga gaaggatttt 1320 ttcccgaatg gtctaaccat atctgaaaaa caataaaaca ataactaaaa ctaattccaa 1380 ttagttgtct ttcaacttta tttaaaaaaa ccaaaaatca tgaaaaatat gcaaaatgaa 1440 aaaaaaaaag aaaacaattg aaaaaaaatt ttgtttgcaa gatgatgcaa tttccaagta 1500 cgcaagtttt cgtaactttc caatgtgtct acagtaaaaa attcgagttg aaaagttgag 1560 ttttcaaaaa gttatcgtca aaaaacaagt tgtcgcattc tttatggcca gtactg 1616 // ID SAT1_CB repbase; DNA; CBR; 163 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae satellite repeat. XX KW SAT; Satellite; Simple Repeat; Cb000169; SAT1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-163 RA Pavlicek A. and Jurka J.; RT "SAT1_CB - satellite repeat."; RL Repbase Reports 4(4), 119-119 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. SAT1_CB is composed of 163bp-long repeated CC units. XX SQ Sequence 163 BP; 44 A; 29 C; 27 G; 63 T; 0 other; ccccaaaatc ggaatttttg ctttcaactt ttttctgagc gaacgagttc acgcatatct 60 ttttgtaaaa gattagtcac tatgattgtt ttgttctaat atctgcttgt tctgtctttt 120 cacaaaacta gtatgtgaaa aatgcggaaa acctgttttg gac 163 // ID MARINER17_CB repbase; DNA; CBR; 1232 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000172; DNA; KW MARINER17_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1232 RA Pavlicek A. and Jurka J.; RT "MARINER17_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC Distantly related to MARINER4_CB, MARINER_DMA, MARINER2_CE. CC MARINER17_CB contains 22bp-long TIRs and is flanked by TA CC target duplications. XX SQ Sequence 1232 BP; 369 A; 249 C; 250 G; 364 T; 0 other; ttaggttggc taaaaaataa tggttgtttt tatgatcaat tgaatttttc ataaaaaagg 60 aagtagacaa gattaactca aaagctattt gccataatta tcaactactt gtagccaaca 120 tccgcgcaaa gaatggggtc cgctgtgaaa gaaccccact ggctgcgacc caaagtaggc 180 gaccacccat ttttcggtct caacgcggct tttgaagtgt ttctcggcta atgagggtcg 240 cattgatatg aattactgga aatctgaaag tgccaaatca gggctacttg gcggatgagg 300 gagaacttcc cagcccattt cctcgatttt ctgctgagtg acttttgaca catgcggccg 360 agcattatca tgaaggaatt ttgtcgttgg tgtattcaca ccttgacgtc tcaacgcttg 420 ctgcatttgg cccaattatc attgatagag ttcagtagtg gctgttagac ctttttccag 480 aacttcaaaa catacaagac ccttgctctt ccaccataca catagcatta ctttctttcc 540 gtatatctct catttcgagt tgttttggcc ggttctccga gggacaaccg ttgtctattc 600 tgagtagtat tatcgtactg aatcacttta tcatccgaca taacataaga atcgagaaag 660 gcgatattct tcgagaaaag aaggataatt ctgataagtg cgaggaggga gtggttgtag 720 gaaaaaactt ccgcaactgt tcgactttcc aatttgtgca aatggttttc aatggtacca 780 ttagtacaag aaaacggttc tgaaagacta cgagtcgttt gacaaggatc cgactcgttt 840 aagtctctca gcagttcact gtcaatgatt tttagtcgaa cggtgtgttc acggttttcc 900 aagctttcat cgtcattatg aaaacgttca aactagcgta cgaatcaatt ttttatagaa 960 aagcttgttt gaatactttt gagagagaac taagagcttg cgcggcattt ttgaccaact 1020 taaatttgta ccttcccgcg cattttttgg aacgacgttt tctaaacgga attcccaatt 1080 gaaaaaacag aatggcaaac tgagactata tatcaaacga tgcgcaaaaa aacgctcttt 1140 cgaataaaaa aaaaaggggg agcaaaaatg ttctccggat agagaaatac gttccgacaa 1200 acacgccact cattattttt tagccaacct aa 1232 // ID DNA2-24_CB repbase; DNA; CBR; 1393 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000226; KW DNA; DNA2-24_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 62-1392 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1393 RA Pavlicek A. and Jurka J.; RT "DNA2-24_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 97% identical to the consensus. DNA2-24_CB CC contains 49bp-long TIRs and is flanked by 2bp target CC duplications. XX SQ Sequence 1393 BP; 432 A; 237 C; 237 G; 487 T; 0 other; ctcaggtaaa cgattcggaa ttagatctga cttcattcgg aattagatcg aataactcga 60 aattcggaat tagatctgag ttcattcgga attagatctg gactagatct aataccgaag 120 ttgccacgag aaatgcgcca tcaatgactc agctgccgcg gatgaattgt tttgtttttt 180 ttgttgtcct aaattttttt cgtcaggaaa atgggtattt ctctcaactt ttgccttttt 240 ttcgctcaat tatttaaact atattttctg gaacatattt taatgtgttg tgcacgtttt 300 tgcaaaattt taggtgaatt tttttaggga cagctgaata ttcaaagttc aatttatata 360 tacgacttct atagaagaca gtaattctat gaaccgacaa aaatacgaat attttgaaga 420 ttttaaattc ggagaaaact ctgcaggtaa gataattttt gcccttttca gcttaaagga 480 ttacgtaaaa acgatgcaag ggatcaccga aaaaacaaga aaaaaagaga tgataaattt 540 ctctgatagt gagctcaatt tacacaagtc gagaaggcct tactttcgga agccgtgtct 600 tgtcatgagc aggttagttt tcgaaagtct ggtggacaaa gaaacatgcg tgaaattgca 660 ggctctcaac cgaatgtgtc atgacccgat taaaacgatt caaaaatttg ggatttgttg 720 tataaaacaa ctgctctgat gaatttattt ggatttgcaa agatttgagt acggaaatta 780 tattgaaatg gctcaagtaa gtttattatc gacatcacaa agccaaaaac ttcttttttc 840 agttaaatca acattcattt cataaagaat atccatctta tctacaaccg gaaactatga 900 caagagaatt ttcaaaatcg aaaatatgga cgagcggaag aattcgaatt gagatttttt 960 tttcataaat tttgtcactt tttcttatct cataggtccc attattctcg ctgatctcat 1020 cgttttcttt tttgctgatc ccattcattc atttgtatca cacccctcat tttcgttccg 1080 atttcctata tctacatttt aatcaatgtt tttctttttc tcatacttgt tctgttttct 1140 tttttaataa attttattat aaataaagtg aatggcgttg aaaagaaaac aaaatttgaa 1200 aagcgctcgc tacgatgctc cgaaatcccg ctggtctgtt cggaattaga tctaattcgt 1260 tcgtagttca ttcggtgttc gttcggaatt agatcagcta aattctgtat tagatcatgc 1320 cacttctatt tacgaacgaa cccagatcta attccgaatg aagtcagatc taattcagaa 1380 tcgtttacct gag 1393 // ID DNA3-1_CB repbase; DNA; CBR; 213 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000086; KW DNA; DNA3-1_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-213 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-213 RA Pavlicek A. and Jurka J.; RT "DNA3-1_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC DNA3-1_CB contains 68nt-long TIRs and is flanked by 3bp-long CC target duplications CC similar to CWG. XX SQ Sequence 213 BP; 73 A; 33 C; 36 G; 71 T; 0 other; aggccgtatg caagaaagtg gaaaaccgtt ttccgatgtt tggaaaatga ttttctgaaa 60 gtctgaaaat attttttttt cgatttaaaa atggattctg ggctaaaaaa tgactaaaaa 120 tgaatataat cactgtgaaa attcttttca gactttcaga aaatcatttt ccaaacaccg 180 gaaaatggtt ttccactttc ttgcatacgg cct 213 // ID DNA8-8_CB repbase; DNA; CBR; 194 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000117; KW DNA; DNA8-8_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-193 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-194 RA Pavlicek A. and Jurka J.; RT "DNA8-8_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC DNA8-8_CB contains 28bp-long TIRs and is flanked by 8bp-long CC target duplications. XX SQ Sequence 194 BP; 38 A; 51 C; 58 G; 47 T; 0 other; caaggctgtc ggaaacaggg ccgcggccat ttttagttaa ggtacttctg agataggtag 60 gattcggcgg cctagcggcc ctggtagttt ttggctggct gagcttattt tcgaaagaac 120 ggactgattg gtccacggta acatacccac ggcctcaatc acggccggcc gcggccctgt 180 ttccgacagc cttg 194 // ID MARINER36_CB repbase; DNA; CBR; 1619 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000358; DNA; KW MARINER36_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1619 RA Pavlicek A. and Jurka J.; RT "MARINER36_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC MARINER36_CB contains 48bp-long imperfect TIRs and is flanked CC by TA target duplications. Similar to TC1, TC1_DM, TC1_XL, and CC MARINER15_CB. The central part shares similarity to mariner CC transposases. XX SQ Sequence 1619 BP; 464 A; 330 C; 363 G; 462 T; 0 other; cagtaccggt caaaaggttg taaacgcagg gtttttcgag cataactcaa cgaataccca 60 accaaattcc gtgatttttt ttctggtaac tacaggggca agtcaaaagg tatgactacg 120 gtcagcgagt tgtacgcaaa cacgctgacg cgattctgca gatttttcag tttttcgaaa 180 aaatcgggtt tttcgccctt tttttcagac ctattttttt tcaaaattta tcaatgtttt 240 caatgttttt ttagtagctt ttagttttca ggtatgccaa gagctgggaa aaagcgtaac 300 ttgaccgttg aggagcaaaa agccattttt cggggacacc aaaatggagc atctcttgga 360 gatctagctt ctcagtttga cgtaggaaaa ccatgcattt ctagatttct gaagcgctgg 420 aagagccacg gatgtaaacc agtaaagtat catatcggcc gcccacgtgt cacttctcat 480 ctggatgata tcaacattgc ccgcgtctcc agaagcaatc caagattgac tgcgcctgcg 540 attggacggg aggtattttt gattagtccg gtttccccat cgacctcgac cgtcaaacgt 600 cgtttgagag cagctggaat catgggaaga cgtccagtta agaagccgtt catttcggag 660 aagaacagaa aagccagagt tgcctgggcg aagcaacacc tcaattggac tcgtcaagat 720 tggaaccagg ttttgtggtc ggacgaaagc aagttcatgc ttttcggaag cgacgggatt 780 caatggatgc ggcgtccagt tggctctcgg tatgatccca gataccaatt accaaccgtc 840 aagcacggtg gaggcagctg tatggtctgg ggtgtctttt ccggaaaagg catcggaccg 900 attcatcgca tcacaactat catggatcgc tacgtctaca aggatatcct agaatccaaa 960 atgctgccac attacaaagc catgggtcgt gggatcgttt tccaacagga taacgatccg 1020 aaacacactt ccaaattcgt caaggtacaa aagattctga tgtctcaaaa tattttcgat 1080 tttaggattg gttctccagc cgcagagttc gcgttatgga ttggccaagc cagtccccgg 1140 acctcaatcc gatcgagaat ctatgggatg agctggagag aagattggca gggaaaaaag 1200 ccaaaaatgt ggacgaaaag taccaacaac tggaagagga atggaagaag atcccacaga 1260 cagtaatcga caatttgctc gactccatgc agcgcagatg tcaggctgtc attgactctc 1320 gtggctttgc aacaaaatat tagattcaat ttgttatttt ttatatgttt tgtgttgaat 1380 aaaagtggtt ttcggaaatt atgctttttt gaaaaattta ggtcaaaatt tgattttttt 1440 ttcgaaaatt caattttttc tctaaaaaaa cgttattttt tcaaattttt gtatgaaact 1500 tggccacgat ttggcaaacc tttacagaaa tatctggtga aaattttggc tcgatatctg 1560 ctctcaaaaa gtagttatgc tcaaaaaacc ttgcgtttac aaccttttga ccggtactg 1619 // ID MARINER24_CB repbase; DNA; CBR; 1245 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000212; DNA; KW MARINER24_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1245 RA Pavlicek A. and Jurka J.; RT "MARINER24_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER24_CB contains 30bp-long TIRs and is flanked by TA CC target site duplications. Related to MARINER3_CE and CC MARINER12_CB. XX SQ Sequence 1245 BP; 383 A; 271 C; 235 G; 356 T; 0 other; ttaggttgtt caataaatag tggtcacttt cacttcgctc taccgttgct tatccaattt 60 tgggtttttt tttcaattct gtttttatat ttatagacgt cacacattgc atgtttaata 120 gacatttaaa aattccgaat ggactgtcta acggccgagg attttctcga taacggacac 180 atactcaaaa gtgtttcttt gatcatatgt ctccaaggtc tctcgaacaa cgaccattag 240 cgagcaaagt gcaaaatgtt agacgtagac ctcatctctc gaaccacgat tgaaatttgg 300 ttcaaaagat tcgaataaga aaattatgat ctggatcata aaccaatacc caaaaggcct 360 agccttaata aaaatgaaaa tattttaatg atactggagg aaaagctctg tgctactttg 420 cgtgcattat ctttgacagc ccaccatcct aatagcaccg taacagatca tgttcctcaa 480 acgggaagag ctcggagagt cgatcaaatc gttccccaca ttttgaccaa tttttagaaa 540 aaggtccgat gagacctgtc cgtttctctc ctctccagga aaccgacgac ggactgggtc 600 aacaaaacaa tcattggaga tgatgaacgg gtactgtatg ttaacaatgc cagtaagcac 660 ctatggctct ctgcaaagga aacggtggaa tcggtctcaa aaggcaacct tcaagaaaaa 720 atcagatttt tccgattcgg ttagacagtg ctgaagtaaa ataccgcaag ctgcttccgg 780 attcctatgt catcaacttt ggctctactg ctttcaaatg gaaagtggta tttatgcaca 840 tcgctctcac ctctagagag gctcagtgtt gaaatttttg catgacaacg aaaaaccaca 900 caaatattcg aagagccgtt acaaactcca tcttctagga atcgaagttt tgcattgccc 960 atcgtacacc gccgacctgg cactagctaa ttactaccat atccgatttc tccagaatcg 1020 tcttgctggt gagaaagtcc atgatcggaa ggatgtcaag aaatttttgg aacactgttt 1080 tgcctctaag tcgccagagt tctacgcgaa cggaattgcc caacttccgt tgcgctggca 1140 agaagttatg aactccaatg gcgaaataat ttctcaatga ttcttgtttt ccttgaagaa 1200 aaaactactt gaagaaaagt gaccactatt tattgaacaa cctaa 1245 // ID MARINER62_CB repbase; DNA; CBR; 375 BP. XX AC . XX DT 30-JUN-2005 (Rel. 10.06, Created) DT 01-JUL-2005 (Rel. 10.06, Last updated, Version 1) XX DE MARINER62_CB - a family of nonautonomous mariner/Tc1-like DE transposons. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW Cb000410; MARINER62_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 193-297 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), E45-E45 (2003). XX RN [2] RP 1-375 RA Pavlicek A. and Jurka J.; RT "MARINER62_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 5(6), 153-153 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 91% identical to the consensus. CC MARINER62_CB contains 20bp-long TIRs and is flanked by TA target CC duplications. XX SQ Sequence 375 BP; 135 A; 65 C; 64 G; 111 T; 0 other; ccgtatttcc tctaatagaa cctctaatag aagcccaccc cgcgaggtct ctaatagaag 60 cccatgggct tctattagag aaaatacggt aattcaaaat tccagaattt tggaactgtg 120 attttagaac tcgacattcc ggaatttcag aatttggaat ctcagaattt cataaattcg 180 gaattttgga atttagaatt gcagaatgaa aacttcgaat tttccaaaac actgaatttc 240 agaattctta acttccgaat tgtcaaattt ctgaattttt gaataaattt tgaaaataat 300 cattgaaaaa tagaagccca ccctgagaaa gaggtaaaaa tagaagccca tgggcttcta 360 ttagaggaaa tacgg 375 // ID tRNAIleATT_CB repbase; DNA; CBR; 81 BP. XX AC . XX DT 29-AUG-2008 (Rel. 13.08, Created) DT 29-AUG-2008 (Rel. 13.08, Last updated, Version -1) XX DE tRNA from Caenorhabditis briggsae. XX KW tRNA; Pseudogene; TRNAIleATT_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-81 RA Smit A.F.; RT "tRNAIleATT_CB - tRNA from Caenorhabditis briggsae."; RL Direct Submission to Repbase Update (05-AUG-2008). XX DR [1] (Consensus) XX SQ Sequence 81 BP; 16 A; 22 C; 24 G; 19 T; 0 other; gccgccatag ctcagtcggt tagagcgtgg gtctaataag cccaaggtcg caggttcgac 60 ccctgctggc ggcaaatttt t 81 // ID GYPSY2-LTR_CB repbase; DNA; CBR; 438 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 4bp TSDs; CER; KW Cb000348; GYPSY2-I_CB; GYPSY2-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-433 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-438 RA Pavlicek A. and Jurka J.; RT "GYPSY2_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 228-228 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC GYPSY2-LTR_CB are flanked by 4bp target duplications. Internal CC sequences listed as GYPSY2-I_CB, they are similar to CER3-I_CE CC and CER2-I_CE from C. elegans. XX SQ Sequence 438 BP; 123 A; 124 C; 67 G; 123 T; 1 other; tgtaaaggat attaatatcc ttttagggtg attttacatt accataatat ttccccacca 60 ggtcatagtc caagttccgc attcccatag ggagagcaca aagtccaaca cagtcacggg 120 tgataagaaa tcccagcggg aaatccatta gatgacacat aggctgaaac accacattcc 180 cctctcagcg cctccgttct gtacacacac tctaacatta ttatttcaga tcgtaccgcc 240 agctcctgga atgccatcac atcatcggcc agcagctccg ccccacaccc acaggatcga 300 tccatataaa tacccctccc ccctttcgtt taatcgaggc cttttatctt gtattacatg 360 tcttattatt gtttctggtc ttagaccagn tttaaataaa ccatttgtta aatctaccca 420 aagcgttgaa ccttcact 438 // ID GYPSY4-LTR_CB repbase; DNA; CBR; 464 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 4bp TSDs; KW Cb000068; GYPSY4-I_CB; GYPSY4-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-464 RA Pavlicek A. and Jurka J.; RT "GYPSY4_CB - a family of nonautonomous LTR retrotransposons."; RL Repbase Reports 4(9), 232-232 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90-95% identical to the consensus. CC Flanked by 4bp target duplications. GYPSY4-LTR_CB 76% similar to CC GYPSY3-LTR_CB. The internal sequence is listed as GYPSY4-I_CB. XX SQ Sequence 464 BP; 92 A; 92 C; 102 G; 178 T; 0 other; tgtacggtat tctaccgtgt tttctctttt aaaatcctct ttccaagtct aaaggagaga 60 aatctccccc gaacacacgt gcaagaggtg tggattactg tatccgcgcg cgaaactgtg 120 tgcgcgccaa aacgcgtctc ctctctcggc aaattctcat cgttttcttt agttttcgct 180 ggtgttcgct cacgattggt gacgacccgt taaagtgtgg ctcactggtt ttaaaggttt 240 tatagtggtt tattgagtaa attcaataaa tagtgtttta taggaattct gtgtgttttt 300 gttgtcttct agtctttcag gttacacagg tctctttgag tgcatagagg ttctgtgagt 360 gcatagcgtt tgtctgtgtc tctcactctc tctctgcatc tcgttgtttt caatagtgtc 420 ttttagcagt tagtgtttct gggagttttt tcagttacat tact 464 // ID MARINER7_CB repbase; DNA; CBR; 219 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000047; DNA; KW MARINER7_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-219 RA Pavlicek A. and Jurka J.; RT "MARINER7_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 80-90% identical to the consensus. CC MARINER7_CB has a palindrome-like structure and is flanked by TA CC target duplications. Related to MARINER8_CB. XX SQ Sequence 219 BP; 69 A; 42 C; 38 G; 70 T; 0 other; ccgtaaaacc tgtaatagaa gggcccccta actttcaact ttgagccaat ttatctcggt 60 tcctgttaaa gatatcaaaa agttgtcaac tgataaattg tttatcataa tatcacaaac 120 attttatcag ttgacacatt tttgatatct ttcacaggaa ccgagataaa tgagctcaaa 180 gttgacagtg tgggggccct tctattacag gttttacgg 219 // ID MuDR-10_CB repbase; DNA; CBR; 445 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 02-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW MuDR-10_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-445 RA Pavlicek A. and Jurka J.; RT "MuDR-10_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 85-85 (2005). XX DR [1] (Consensus) XX CC Copies are ~90-98% identical to the consensus. MuDR-10_CB CC contains 11 bp-long TIRs and is flanked by 8 bp-long target CC duplications. Similar to MuDR-12A_CB, MuDR-13_CB, and MuDR-14_CB. XX SQ Sequence 445 BP; 142 A; 89 C; 79 G; 135 T; 0 other; catacttgca aaaatcgttg aaggcccggc ccggcccgga aaaggcccgg acaggtattt 60 ttttggtcga aatttctcaa aaaaaaattt ttttttgata aatttttgag aattttttaa 120 caaaaaaact agtttttgga aaaaaaactg ttattttgct tcaaaaatgc aattttttct 180 tcgatctcaa ctttggaaaa atgtcaggaa aaaaaattat ttttcaaaaa tttgtttaaa 240 catttacaaa ttcaatattt acaatttagc ttaaaattag atgataaaaa caactttttt 300 cccaaaaaaa aaacacactt ttttgcctaa aaatcgaagc tggcgccaac tggccgggcc 360 ttccgggcct cccgggccgg gccttccccg ggccgggcct tgaccaattt tttgaagggg 420 cccggcccgg cccgttgcaa gtatg 445 // ID LINE2C_CB repbase; DNA; CBR; 3234 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Caenorhabditis briggsae family of LINE retrotransposons - a DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; Cb000207; KW LINE; LINE2C_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-3234 RA Pavlicek A. and Jurka J.; RT "LINE2C_CB - a family of LINE retrotransposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC Distantly similar to LINE2A_CE and LINE2E_CE. No functional CC ORF detected. XX SQ Sequence 3234 BP; 797 A; 964 C; 530 G; 940 T; 3 other; aaatattttg ttagagacct tactattgtt gagagctcaa accccagacc ccttcccaaa 60 gcccctgcac agggagccgc tccctcctct tctgcatagg aaattngcca ccggacccgc 120 tcggacatct accatcatga taccacatgc atgtctcaac gtctgtttaa aagtataaat 180 gtccattcaa atgttattgt ctgtccaacc gtggcacctc gtcccgtctc cgatatctcc 240 ccgtgtcata tcgccgcccc agttttgtcc ccctttccct tgaaacccct ccctaaaacg 300 aaccctttac ctgcttccgc agtcaaatca gctgtgataa atctctcctg caaactctcc 360 aatgtcagat ctatagcatc tgcagaacgc ctccaagtac ttcactctga catgctagac 420 aaccagatcg accttcattt tgttactgaa tcctttctct ccccatccgt ccctgactct 480 ctctcctcat cttcgaccct tcattgtctt cgcttcgaca gacggtcccc taaccctaaa 540 ggcaagggag gtggcgtcgc ggtnttcgcc cgcaaagaca tacagctggt agaggctgat 600 agtctcagct cccagtttta ccccctacac cactgcgaaa ttatcactgt cgatctgctt 660 cagataagtt gccgattcgt cttagtatac cgtcctccgt ccacctcacc agcccaatcc 720 gatgtacttt ttcacaatct atctttactg ctcagcaaca gttatcgctt caatttcctt 780 ctcggtgatt tcaattaccc gcagataaac tggtcttctg ataaccttct gcctaatgat 840 ttgcctgctg gcctggaaag cctgatgtca ctatccgatc tgactcagat agtagacttc 900 ccaaccagaa ccagtcattg cggtgctgaa aacttcttag acctagtatt ttgtaacaag 960 ccgcaacaca tctcgaaaac cgtgaatctt ccacccttcc tgctctctga ccattcctct 1020 gtcctcttcg aaacaatcct acctagtatt tctcctcctt cacccatcct caacactacc 1080 tcgtcaaaac gtctagacta tataaaatgt gacgtcaagc gtcttttgga tcatctctgc 1140 tcttacaact ggcccaggca gctatctttc ttctccacgg ttgattcgaa acttgctcat 1200 ttctccgcca ttttcaacga gctcgtagtc ctctacactc caaccgtccg tgctcgtcgt 1260 ccaaccttct cgcatagaaa acccaaggtt ttcaggttca tccaacgtcg caacccgtcc 1320 ctccctagac cccagctcaa actgcttgtt cggcgacagc tcaatcgagt taagagggcg 1380 cgtgcaaggg aggagctttc tattatcaac aacaagaacc ccaaagaact cttccatttc 1440 gttaaatcta gactccgtcc cccgcactgt cccatttctc tcctggttaa tggcacctta 1500 tcctcagacg cttctgaact agccaacgaa ttttcttccg tcttccaaga ggccttctcg 1560 cccccaagcc ctcctttctc cgccctccct gctatcgctc cctttgccgt ctgtcctgat 1620 ttttctcctc taaatattgc aaagcacatc ggttctctac cctcaaaagt cggtttctcc 1680 ccggatttta tcaacttcct tgtaatcaaa aagtgcagtg atgcgataac catccctctt 1740 tcgctcatct tccaagaatc cttctcctcc gccaaatttc ctgagatctg gaagcactcg 1800 gttgttagcc caatattcaa gaagggatcc aaatatgacg ctaataacta cagacccata 1860 acgctcactc atgcactttc cagactcttc gaaagattag tccttgaaga gctaaagcgt 1920 gttatcggtc cgagtatttc tccgaatcag tacggattcg tcagtaagcg atcctgtgtt 1980 ctagccgtcc ttgagtccac ttccagaata cagaaaacct tagcaaataa gcaacaattc 2040 gtagatgtta tttactttga ttttcgcaag gcattcgaca ctgtcccaca caatctcttg 2100 ctgctgaaaa tgaggcgaat aggtattgat gaacgatgct gcgtttggtt cgagtccttt 2160 ctcagcaacc gctcatccaa cgtcaaggtt aatggcctaa tgtcaaccag cgagattgtt 2220 gtcaaatccg gagtccccca aggaagtgtc actggcccct ttttgtttct gatctacatt 2280 aacgacttac tcggcctctt tcctcccaat gttcatgtca cggcgttcgc cgacgaccta 2340 aaaataaccg gttccgaccc attggatatg cagagaagta tcgaaatcgt cgagcactgg 2400 tgtgacatct ggagactcaa actagccgaa aataagacgg ccgttatgca ttatggtaaa 2460 cgcaatccta agacagttta ctttattaag ggatccccca ttactccgca tcgctcattc 2520 aaggacctag gtatactagt tgatgatcaa cttcaattcg acaaacacat caatcttatt 2580 gcctactctg ctaaactcaa gtcccgccaa atactgaaaa cgttccaatc gaaaaaccct 2640 tgtttatatt tccgtctctt cgacacctac attagaccgg tcctcgaata cggttgtgaa 2700 cttttcgatc catccaatgc cacacttgcc aataaactag aatctcctct tcgttatttc 2760 accagaaaag tcttccagag atgtaatatg cccttcaatt catacaccga tcgcctatcc 2820 cagttctcta tgctaaccac ccttcatcgc cgcacccttc tagttcttcg tacctatcac 2880 aaaattgtta taaactcata ccattttccc tctatgtcgt cctacattct tcccagccat 2940 tctaacagag ccccgtattt gttcaaaatc aacggtcaat actttgactg cttccttcac 3000 agaaacttgt ctatgtggaa ccgtgtatgt aaggtgataa attctaagct cagtccggtg 3060 gcgtttgcta agcgagtagg agcgattcct tatgatattc tgatccctcc cacttgacct 3120 acaggactct ngtcggtccg tctggtcatt ttacttcttt tatttgtaca ggtcccattt 3180 cttgccaaat tatctatcga tttcccccat gcattgcaaa taaatatatt atta 3234 // ID MARINER16_CB repbase; DNA; CBR; 1330 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000149; DNA; KW MARINER16_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1232 RA Pavlicek A. and Jurka J.; RT "MARINER16_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(4), 113-113 (2004). XX DR [2] (Consensus) XX CC MARINER16_CB genomic copies are >98% identical to the consensus. CC The Internal region distantly is similar to MARINER4_CB and CC BMMAR3. CC Translated similarity to known transposases, however, no element CC harbors a functional ORF. MARINER16_CB contains 32bp-long TIRs CC and CC is flanked by TA target duplications. XX SQ Sequence 1330 BP; 352 A; 303 C; 319 G; 356 T; 0 other; cagggtggct gaaaagtatt gagacacttg ttttttgttg tattttcaaa aatggagttt 60 ttcaacaaaa gaaccagatt tattttttca acaaatgata gtaatagaaa atttgatatc 120 agaggagata ttcgaagttt gagccttcgg ccttgatgca cgccttcaaa cgagctggaa 180 cagaagcgac ggtgcgccgg aggtagtcat cgtcaagatc gaatcccatg ctaccttgag 240 caaagcggcc ttcagtgaat ccacagtagc aaaaactttg ggtgcgatcg agccatcacc 300 ttttcctcca aatatgcccc aaacggaaaa gtcgagtgga ttcagatcgg gcgaggaagc 360 gggccacatg tccttgcccc agtagccagg gaaatgagcg tcgagaacag ctttcgtgga 420 tttcgagcca tgggacgggg cccaatcttg ttgaagaatg aatgggttgc tggccaaagt 480 ggctagtgac ccacggacgt aaaacatcca tcaacaccaa cttttggtac acatccgagt 540 tgattttcac atttctatca atgaaaacca atgggacttt accttccgac gtcaatccag 600 cccacaccat cactgacttt ggaaaaagtc tcttgtaggc cagacgacgt tttggggact 660 ttgcttcgtc ctttgacaac aattgccgag cattctgtcg gttcggaagc ggctcaaccg 720 taaaaatttt ctcatcagtc caaatgactt cagagaggcg gcgcaccttg agtgcgtcgg 780 agcaactttt tcgctttttc gagccgattc ttcttggact gttctgtgag gtattggcca 840 cgaaggagcc gataactgtt cagacccaag tcctttttca caatggattg aaccgattgt 900 cttgagattc cgagcgatga agccatttgg ttcatgctga ccgcatcatt tcgtgtgatt 960 ctcttcttga tgaatgccac gagtccggcg agtgttgaca gtacgaggtc ttccgctttt 1020 cttaagctcc aacacatgtc ctcgatcttt caattgttgc gacaactcga tagacagttg 1080 ctctcggaag aagaagtctt cgagcgatgt caccggtgga gatgccgtcg ttgaacagct 1140 tggcaatggt ttggcgatga ggagaagctc gcataacttc gtgaagagat aaagtgatgg 1200 gaaatggctc taatgtcggc ttatatacgc tccctatttt cgaaataata cgaaactttt 1260 cgaaaatacg acttggcacg gtgccaagga gccatcataa caagtgtctc aatacttttc 1320 agccaccctg 1330 // ID MARINER39_CB repbase; DNA; CBR; 1269 BP. XX AC . XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 15-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000455; DNA; KW MARINER39_CB; TA TSD; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1269 RA Pavlicek A. and Jurka J.; RT "MARINER39_CB - a family of mariner/Tc1-like transposons."; RL Direct Submission to Repbase Update (SEP-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 92% identical to the consensus. CC MARINER39_CB contains 26bp-long TIRs and is flanked by TA CC target duplications. Similar to MARINER13_CB, the central part CC has translated similarity to MARINER transposases. The family CC was probably nonautonomous. XX SQ Sequence 1269 BP; 347 A; 276 C; 270 G; 376 T; 0 other; cagggtggct tttaattacc ggcacatgtt tgaaagaggt tttctcgaaa agtaaaagcc 60 gaaaactgat gaaactcaac agtatattta tttggacgta caaaaattat aatcaaaaag 120 aatttttcga ttcggtcatc gttcgcctca gttacggtct gaagacgtct tcggtaggca 180 ttgatggtgg cacggtcgaa agtttgtccc atttctcgaa aagtgtttct tccagagcct 240 cgaaagttga atagggtctt gagcagatct tgttctgcaa aactctagat ggaatagtca 300 aggggtttca aatccggcga gtaggccggc cattcgtccc cccaggcagg tgcgcctcgc 360 accactgctg ggtgagtttg gcggtgtggg ctggagctcc gtcattctgg tgaaccaaat 420 gtacccgttc aaagtggtat ttggtccgtg ggagcagatt cttcttcaag atttgctcga 480 tatacatttt ctcggcgata cggacgtttt tatctatgaa atttgaaatt tgagcatatc 540 gcatcaaaaa ccgtaattct ggccgggtgg aaaactccag gaatggtttt ttctttttca 600 aaagcttcct tgatatcctt ggctaatcca caataacttt gaaagttgga ttcggcttca 660 atcgtgaacc actgctcgtc aaagaaaacg gaccccaaat gttctcctcg ctgcgtgcca 720 tccagaggaa atttagcctt ctccagacgc tattgcttat tgctctccga caagatgact 780 gcttttggaa tacaatagca ttttagatta agcttctttc gggctatctt ttagattaaa 840 aaccaataga taaccatatt catggccaat tttctgagcg atctatgtag gctactcctg 900 atttgatctc gaacagcttc aacgttttct ggagttgtca ccgtagtttt tcttcctctc 960 ccaatgcgat caaatagaga tccagactcg gtgaatcttt tgataacctc aaaaaaccac 1020 atgtctgcaa tcgcaatgcg tttaatgatc tcgtttcgac taacgcccta cttatgaagg 1080 ctgatgacag tcgcatggtg gacgttaggt ctcgccattt agctgaaact caaccaataa 1140 atctgaaact tggcagaaat actaattatg aatcaataaa tcaatgtaca aaatttgatg 1200 ctcctattgc gtaccagcaa cgagaaccat ggcgccaaag ttgtgtgccg gtaattaaaa 1260 gccaccctg 1269 // ID MARINER27_CB repbase; DNA; CBR; 1289 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000272; DNA; KW MARINER27_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1289 RA Pavlicek A. and Jurka J.; RT "MARINER27_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 90% identical to the consensus. CC MARINER27_CB contains 26bp-long TIRs and is flanked by TA CC target duplications. XX SQ Sequence 1289 BP; 409 A; 247 C; 231 G; 401 T; 1 other; cagggtggct attaattatt gacaccaaac ttgcgagcta gatatgatgc ataccagacg 60 cactaatatg tgttctttta tatttttctt attcttctac tcattgtgca tttccctgtc 120 aaatttcatc aaataatatt acgtctgaac tgaatggtgg ctctttttcc aacccttttt 180 tcgatcaaca acggaacaat tgaaaatagc ctcatgactg atgttacaaa accagtccgt 240 gtggaccgca tgttagtcga aagtactgcc aataaatttt ttcttattca cattgacgtg 300 ggctatctaa taactgattt tggagtatct gtgacatcag ataccatcgt tatagtcgtg 360 aaaaagagga tttgctgaaa ttcagacgag agttacagaa agctcgctgc tgacttcaaa 420 atggcttaac gcttgatgaa aattattttc aaanaaagaa caatttctag cctttttaaa 480 aatactaaat gagctctctg ggagagggac accagagatt tgtggctcaa aaagcttgga 540 actttctaag cggcacgcgc ctaaacactc acacgaggac actactttcg ggtgataatt 600 tttacagtcg atggcaacaa ggtccctcga aattgcagaa ttatattcaa aaatatgtca 660 tctgtctgcc agtaattaaa aattgcaaat agaatttcgc tttccgtcac gattctgatc 720 tttgatggaa gcactggaaa ttgcgaaaaa tcccttgttt tcctcaattt tcgaaccaaa 780 atcaactata gaacaaatct aagttatcaa gattttgcat taatctgaat cctactcgaa 840 aagttaatat agggcgttct gacaagattg agccacggtt tacagtgcca aagacacccc 900 agggtggttc aaactcaatt ttccgtagtt gaactaggca caagaattga tcgatttctt 960 ctcaaacttg aaaccaataa attattcagt tttagggtat tggacccaga tagtgtcttc 1020 atgaaaatac aaaatatcac atttctgatg accccccttc agaagatatg ggcacaaaaa 1080 ggtcgaaaat acctccgtgc cgccgttgcc tcctttccga agcttctgaa ggctgtcgtc 1140 agagtgaaaa gaaatgtatt tgaaaatttt tgcattatta taaattttgt gcgtctgaaa 1200 ttatttaatc caaaattttg aatattttca tcaagtttta gaagagttat gaaggcttga 1260 atcggtgtca ataattaata gccaccctg 1289 // ID HAT8_CB repbase; DNA; CBR; 1012 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000441; DNA; HAT8_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1012 RA Pavlicek A. and Jurka J.; RT "HAT8_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(8), 207-207 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC HAT8_CB contains 15bp-long TIRs and is flanked by 8bp target CC duplications. The internal part shares weak translated similarity CC to HOMER and ATHAT3 hAT elements. Distantly related to HAT9_CB CC and HAT10_CB. XX SQ Sequence 1012 BP; 284 A; 218 C; 221 G; 289 T; 0 other; cagggctgtc caaaaggccg gcctcggccg gccgaaggcc tcgcgcaatt ttgtgcggcc 60 gaggccgtcg caagttcgct tcattgagaa aaagcctcgc gaggcctcgg ccggcctcgc 120 aaatatgact acaagtcgca tattgtacga caagttgcgt ttttttttta attttttgtt 180 ttttctcgct ctttttcagc aaatcacgca ttttttgaga gttttctcga tttttcgata 240 tttagagcat ttaaaaaaag gaggaagtca agaaatcttt tattcaacac tgagataaca 300 ggggagagaa aatgacaaca aattcaagaa aattaacaaa aaaagcttgt gttcatgcat 360 caaaatcttc aagtctcgcc tgtgtcgaat cgatcttttt ctttgagaat catcaacttt 420 tccagcattt ttaagtccag gctctgacga tttggtgtgt acaagttttt tatgattgaa 480 aaagatcttt ctacatctgc ttccgaagct tgaatcgcat gaacttttcg ggcgatttcg 540 tgcaaaattg gataggagct atttcaacta gcataaaaac cgccgaatcc ttcccttttg 600 ttctttatca ctaattcaca atcggttttg ttgggatcaa tgaaccattg aggcatctga 660 attgtgtctg aaattgaata acggttataa caaatgaata aatcggctta aaccgaccat 720 cactggcgtt cgaaatgttc atgtcgccac agatcgatgg aaaaatcgag aaaactctcg 780 aaaaatgcgt gatttgctga aaaagagcga gaaaaaacaa aaaattaaaa aaaaaaacgc 840 aacttgtcgt aaaatatgcg acttgctgac cgtagtcaca tttgcgaggc cggcctcggc 900 cggccgaggc ctcgcgaggc tttttctcaa tggagcgcgc cgaggccttt tttcttcggc 960 cgaggctttt tcgaggccgg ccgaggcccg gccgccgttt tggacagccc tg 1012 // ID MARINER49_CB repbase; DNA; CBR; 1227 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000217; DNA; MARINER49_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 670-1227 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1227 RA Pavlicek A. and Jurka J.; RT "MARINER49_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 298-298 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC MARINER49_CB contains ~340bp-long imperfect TIRs and is flanked CC by TNA target duplications from the C|TNA|G target motif. XX SQ Sequence 1227 BP; 352 A; 224 C; 233 G; 418 T; 0 other; actagggaag gccccaactc gggtgtggcg atacgggtgg tgacctatat catctgaaag 60 ctgacatttt cctgattcca aatctgtttt caaaaagtgc tttgtcgcgg tagttttcga 120 gaaaattggg tcgaaagttt cgaaaaatga cgtggatttt taatctcatt ttccttcctc 180 acgtatataa gttttgaagc gttgaaaaaa tgtggaagcg tggtcgaatg gttagtgagg 240 aggaatatga agcgggtact ctctggttcg actccctcga gctgctaaac tttttttgaa 300 ttttttcttt gtttttttcc ggtgactgta tctgacttct aggtgatcct atatggttcc 360 atatacttgg aattggtttc cattttgatt ttaactgttt tacctattat tttcgaaact 420 ttttgttttc atctattttt ccacaatttt caaaggattg tgatccattg aagattctag 480 acaaaccgca tatttttgat tttgctcaaa ctattgtcat tggtcctttt gggcacgctg 540 attacagaac tgaagtcagt ttttccaccc cggccttgtg aaaaaagtta tgagctataa 600 aagtgactac agtactaatt tctcattttt ggagtgagtt tctgaaggaa ttattgactt 660 tatttgggga tatttaaatg ttattcgtat tttgtatgcg tgtctacaat ctgaagaggt 720 tttctctttt tttcgaaaaa aaattttttt tgaaaaaatc gccatggggt acccccttgg 780 cattttttca attttcgaaa aaattttaat gtgctagaat tagttcaaaa caaagagaat 840 caataaaaaa agttgtttca cgagattcga taacctatgt ccatttttac aagtcagata 900 cggtcaccgg aaagaacgaa gaaaaaattc aaaaaaagtt tagcagctcg agggagtcga 960 accagagagt acccgcttca tattcttcct cactaaccat tcgaccacgc ttccacattt 1020 tttcaacgct tcaaaactta tatacgtgag gaaggaaaat gagattaaaa atccacgtca 1080 tttttcgaaa ctttcgaccc aattttctcg aaaactaccg cgacaaagca ctttttgaaa 1140 acagatttgg aatcaggaaa atgtcagctt tcagatgata taggtcacca cccgtatcgc 1200 cacacccgag ttggggcctt ccctagt 1227 // ID DNA2-13_CB repbase; DNA; CBR; 295 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000108; KW DNA; DNA2-13_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-295 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-295 RA Pavlicek A. and Jurka J.; RT "DNA2-13_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~89% identical to the consensus. CC DNA2-13_CB contains 15bp-long direct repeats and is flanked by TA CC target duplication. XX SQ Sequence 295 BP; 63 A; 88 C; 80 G; 64 T; 0 other; gggttggcaa cggggctccc cgctttacgc gggagccccc aaaacggggc ggggattcgc 60 gccccgcctg ttgaaaaaca aacttatgtt gaatgaaaca gtaacctaat tttttaatta 120 tttttttacg attcagggta cccaactagg ctaccctgaa agtttcaagt caattggttc 180 attcagttac gcgcaattac gcaaagtagt tgccgcctcc cgggggggcg ggggcgaatc 240 cccgccccgc gcgcgcgggg cggggatcgc cccttttcgc ccccaagcca acccc 295 // ID MARINER56_CB repbase; DNA; CBR; 266 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000408; Cb000564; DNA; MARINER56_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-259 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-266 RA Pavlicek A. and Jurka J.; RT "MARINER56_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 327-327 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 89% identical to the consensus. CC MARINER56_CB contains 68bp-long TIRs and is flanked by 3bp target CC duplications TNA. C|TNA|G insertion motif. MARINER56_CB is 65% CC identical to MARINER53_CB. XX SQ Sequence 266 BP; 84 A; 43 C; 49 G; 90 T; 0 other; ctagggaact atctgagcat gattccaaat tacacttcat gacctatatc attagaaagc 60 ccataaaatt ctgattcgga atatgttttc tgtttttgcg aaacggcggt gagcttcgag 120 aaaattaggt taaaagatat ttcagtgttt tctagcattt aaaatttgac cgttttgcaa 180 aaacagaaaa catattcctt ttatgggctt tctaatgata taggtcatga agtgtaactt 240 ggaatcatgc tcagatagtt ccctag 266 // ID DNA8-1C_CB repbase; DNA; CBR; 1103 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.02, Created) DT 07-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Caenorhabditis briggsae subfamily of DNA transposons - a DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000601; KW DNA8-1C_CB; DNA8-1_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-365 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1103 RA Pavlicek A. and Jurka J.; RT "DNA8-1C_CB - a subfamily of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (07-MAR-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~90% identical to the consensus. CC DNA8-1C_CB contains 10bp-long TIRs and is flanked by 8bp target CC duplications. Variant of DNA8-1_CB. XX SQ Sequence 1103 BP; 349 A; 190 C; 212 G; 346 T; 6 other; gggttccgaa tttgaaaaag agggatgagc ttttacgtga aaatgagctt ttcaaatagc 60 tcattaaggc tcatttgatt ttgaatgagc tttttgaaaa aaaaaaacaa aaaagctcac 120 gtgactcttt tttagcttta tcaaaaagct cataaaggct catgaggctc attctgtgat 180 tttcaataaa aagctcatta tggctcatca tccataatga aaggaaaata attttttaaa 240 aagtcactga tatcatgaaa aaatcaccgt tttaatatgg tggcctaact ttttgatgga 300 gttttcaaag caattttaac acggttgccg agaaaacaaa tgaggtgaat gccagaccat 360 tgataggcca taaaagttgt tggcctagaa tactcaaaat gtagaantta gaccattgtg 420 tccaaatgag ctagaaaccc tatcaggtga atgtcagacg agttatggtc cataaaaatg 480 gtggcctaaa gaactcaaca actcaacatg gaaaagttag gccactgtgt caaaatggac 540 tagaaagcat cttaggtgca tgccagacta tttctgggcc ataaaacttg atggcctaga 600 aaactcactt gcaaaantta ggcnaccaag tgaaaatggc gtttaaatgg cttgatattc 660 acctgatatg atttctaggc tattttcaca tgatgaccta atttttgcaa gataagtttt 720 ctaggccacc atttattttt caggccacca tngtttctgc ccatcagggc acttgattat 780 ttgaatattt ggctgaagtg ttggttttta ttattatttt tgccacgtga acacttttct 840 agtgnatttt ttgaactatg cttccgtgag cctttttttt gaaaaagagt caacgtgagc 900 ttttttanaa atgagcctcg atgagctttt atcaaaatca ataattacgt caaatgagcc 960 tcgatgagct tttttcaaaa tcaatatttt cgtcaaatga gcctgtatga gctttgacgt 1020 ggagtcgaaa aaggctcata tgagcctgct tcatgatgag cccacgtgag cttaagctca 1080 tgactgagct tttttcggaa ccc 1103 // ID HAT16_CB repbase; DNA; CBR; 876 BP. XX AC . XX DT 31-JUL-2005 (Rel. 10.07, Created) DT 04-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE HAT16_CB - a family of nonautonomous hAT-like transposons. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000522; Cb000606; HAT16_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 22-715 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-876 RA Pavlicek A. and Jurka J.; RT "HAT16_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 5(7), 179-179 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 97% identical to the consensus. HAT16_CB CC contains 15bp-long TIRs, flanked by 8bp target duplications. CC Distantly related to HAT15_CB. XX SQ Sequence 876 BP; 315 A; 156 C; 133 G; 272 T; 0 other; caggcttgtt cggaaaaaca aattcggaaa atcgtgttct cgaatttttt ctcgactttt 60 ttttttcgga aaatcgagtt ctcgaatttt ttctcgactt tttttttcgg aaaatcgagt 120 tctcgaattt tttctcgact ttttttttcg gaaaatcgag ttctcgaatt ttctcgaatt 180 tcaattagtc aaaaattacc agtttatttg acaaaaacaa caaaaacaac aaaaagcaca 240 aaaatgaaat ggaaaacaat aaatttgtgc cggagtcttt ctgctcgttg aagaatcggt 300 tgcaaatatt acactttttc cttccatccg ccagatttgt caataccgct gagtattttc 360 ccatgtttag tctgaaaatt tcgttaaatt cagacaaagt tactcactgc aaaaccaaca 420 attttaagaa aaacttttga tgacctaaag tctgaaaaaa accaagtgtt ttcagtgaga 480 gaaggtaaaa aatcactgaa aaataaaaga agtctattaa gaacagtata aaccgaaaaa 540 aatgttgaaa aagtaatgaa aaccctgatt aaagtatgtt ttcattcaaa aaaaattaat 600 tttaaaaaaa ttcaccttaa atcgaccccg taaatcgaca ccgattgcgg gtctcgccgc 660 gcttgggtta ctgttgcacc cgtttcaact atacaaagta gagatttcct cttcactttg 720 aacgcagcat gattatttcg agaaaaaatt ttccgaatat ttttcggaaa attttccgac 780 ggaaaaaaaa attcggaaaa ttttcaaaaa ttttccgaaa aaaatcggaa aatcggaaaa 840 atcgagaact cgattttccg attccgacca agcctg 876 // ID HELITRON2_CB repbase; DNA; CBR; 185 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000019; DNA; KW HELITRON class; HELITRON2_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-185 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-185 RA Pavlicek A. and Jurka J.; RT "HELITRON2_CB - a young family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 269-269 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC HELITRON2_CB is 77% identical to HELITRON1_CB. XX SQ Sequence 185 BP; 61 A; 35 C; 38 G; 51 T; 0 other; tcttccttat taataaaacg ctagaggcgt ctgtccgtcc tcgtgtccgt ctgtggactt 60 ttgaaaaaat tgaaaaatac atatatattt acgtgaccct tttatttaga aaaagtgaga 120 aacgaagcga cgaacatttg aaaaaaaata gattgaatcg cgccgaaggc gcaccagctt 180 gctgg 185 // ID MARINER60_CB repbase; DNA; CBR; 1215 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000307; DNA; MARINER60_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 185-1075 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1215 RA Pavlicek A. and Jurka J.; RT "MARINER60_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 331-331 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC MARINER60_CB contains ~130bp-long TIRs and is flanked by TNA CC target duplications. C|TNA|G insertion motif. CC MARINER60_CBis related to MARINER50_CB and MARINER53_CB. XX SQ Sequence 1215 BP; 393 A; 199 C; 210 G; 413 T; 0 other; ctagggaagg ttgtaattgg ggggtggaac ttcggtatga gacctatatc attcgaaagc 60 tgagaatgag acattttcaa acatgtattc aaattttgct gaggagctac cagtttcgag 120 aaaatcaagt ttcaaatttg gctcaaattt gactcttaag ggcgccgcgc ctcccctctt 180 tcttatatag attgggggaa gtgaaagaac aagacagcag tggtgtagtg gcgaggaggg 240 atgaagagta tccaaccggt tgtaggttcg attcctcttc ccgttattgt tttttgattt 300 tatttttggt ttttgtggcg atcttcaaaa tgctatgaac gcattttttt caaagaaaaa 360 ttttaattgg atacttattt tttacttttt cacaagtttt gaaaagtaca tactccatag 420 cttttgcaaa tttcttgaag caacactaca aatctttttt cagttcttta tttcaaaatc 480 cacaagattt gttcgttatt ggggttgtaa agtgataaat caatgagaga taatgtgaat 540 ctatgttttt tctcaagttt tgagtactac tgggtgatta tcgaagaaat atggattgta 600 ggataatcga aaaaacatta aaagctctcg attccgaaaa ggataaagct tccaaatatt 660 gctaaaagac tcattttaaa gtttctgtct gtttagaatt cgttttagca catttgaaaa 720 tttttcgaaa aatagtttga aaatgccaag ggggtacccc atggatattt ttcgtcaaaa 780 ttttttttct gtaaaatcga gaaaactttg tcagatcgta gaggaacatt tgaaattgta 840 attacaatca aaaaacttcc aaaatctttc accaatcatc gaatgtcttt ctctcaaaaa 900 tcaaaatgta gtttgaataa tgcttcaaaa aaagtttttc aaagcatata acataagtat 960 tccataagtt ttgaataaaa gaaaatgatc ccataaagtt ttcaagtttt ttttcaaaaa 1020 aaaaattttc gcaaaaaaat caccatgggg tccccccttt gcattagcaa tttctcagat 1080 ttcgaacccg attttctcga aactggtagc tcctcagcaa aatcagaata tatatttgaa 1140 aatgtctcat tttcagcttt cgaatgatat aggtctcata ccgaagttcc accccccgat 1200 tacaaccttc cctag 1215 // ID DNA8-3_CB repbase; DNA; CBR; 928 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.03, Created) DT 07-MAR-2006 (Rel. 11.03, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000366; KW DNA8-3_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 580-928 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-928 RA Pavlicek A. and Jurka J.; RT "DNA8-3_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(3), 118-118 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 95% identical to the consensus. DNA8-3_CB CC contains 21bp-long TIRs and is flanked by 8bp target CC duplications. XX SQ Sequence 928 BP; 308 A; 173 C; 162 G; 285 T; 0 other; cagtgtgcct tatcgacaaa tgatttgtcg acaaacgccc ttttcgacaa atttatcgac 60 aaatttaccg gtaaatttat cggaaaatta ccgacaaatt gtcgataaaa acgacattta 120 tcgacaaatt tatcgacaaa ttgtcgacaa aaattgctat taaccgccgg aattacttgt 180 aaaaaatcgt atcgttacca ttttttccta ggacgtctag aatgatggaa gaacttaccc 240 aggcaaactt tataggctat ctggcttggt ggcccaactt tcacaacatg aattttctag 300 gccacgattc tttttagcct agaaatgatc tgatgttcac ctggtgtgtt tttaggtcat 360 tttaacatgg tggcctaact ttcgcgcgtt gagttttcta ggccaccatg taaaaatggc 420 ctagaaacat accagatgaa tatctgatca tttctaggcc aaaaagttgg tggcctagaa 480 aactcaactt gcaaaagtta ggccaccatg tcaaaatggc tcagaaaacg taccatgtta 540 acatcagatc attttcaggt caaaaagttt ggtggcctag aaaattcatg ttggaaaaat 600 taggccacca ggtcagatgg cctagaaaaa agatgagata cgatttttta caagtaattc 660 cggcggttaa tagcaatttt tgtcgataat ttgtcgacaa atgccccctt cgacaaattt 720 atcgacaaaa aaacgacaaa tttatcgaca atttgtcaac aaaattttgt cgataaattt 780 gtcgataaat tactttcgac aaatttaccg ataatttgtc gacaatttat cgacaaaatt 840 ttatcgtttt ttatcgacaa atttatcgat aatttgtcag gtaaatttgt cgacaaaatc 900 ggaaaatctt tgtcgataag gcacactg 928 // ID MARINER45_CB repbase; DNA; CBR; 2587 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000088; DNA; MARINER45_CB; mariner/Tc1 superfamily; KW transposase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 274-972 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2587 RA Pavlicek A. and Jurka J.; RT "MARINER45_CB - a family of autonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 294-294 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC MARINER45_CB contains 285bp-long TIRs and is flanked by TNA CC target duplications. C|TNA|G target motif. CC The family contains two autonomous genomic elements with an CC intact CC ORF encoding for a 298 aa transposase, and several nonautonomous CC copies with deletions in the ORF. MARINER45_CB is related to TC5, CC TC4 CC from C. elegans and FOT1_FO from Fusarium oxysporum. CC MARINER45_CB_ORF: 1060-1954 (298 aa) CC MELEKEVRMHIENGKILHDSVLRFLIAGIIKKYKIDIENFIGSESWLNGWKARFGITSRKITKFVSTIRH CC KTRDQIEKDSKEFVTAANQVFPLYHPSNIYNADQSGFQIEMHTARTLTLKGSRNVHCVVGSESSTTHSYT CC VLPLISASGKLHPKLFVTLKEPKGQFPQKGHFQASNLEVTCHTSHIMTKELMKVFFQKIVFDSSMPKDAL CC LIVDSWNSWKDTAAIDSVTPSSHKLKLLTIPAGCTGRIQPCDVGIFGSFKKVVKTLTNYAQLTNSNYKFQ CC TRDETLKVSYLFVKQFKK. XX SQ Sequence 2587 BP; 750 A; 536 C; 548 G; 753 T; 0 other; caagggaagt gttttcagag aggcgttgag aatttgctca aaatttcagt actgatagtt 60 tgagatatcc gcaacacgat gacgaaaaaa tctaggtcat aaccccacca ggaagctgaa 120 aaacttcgtc tgaaaattct gcccgatttg ggcgcgcact ttcccccctc tcctatacgc 180 cctccgcgcc agaggaaaat gtcggttgtg tggtgtagcg gtaagagggt aactcattag 240 gtgagactcc actggttcga accccactgt ggttaacatt tttttgtttt tttttcatgt 300 ttttctaaca atcagaagtt atcagtagag catggatttg tatttcaact cgcagaaagt 360 tctggaagca gcagaaaatt gctataaaag gcgatttttt catttgttcc tgtttttcta 420 tttttttttt cgtattaata gctattattt gtcttgctga tgtcgaagtt tcgtcgcatt 480 ttgacataca ttctggatct gggagtcaat cctaagcgtc agccattgga tgaagaggat 540 ctcaagctcg cggcttattt gattgacctc ggtgaatcga tcgataaggg agactttgat 600 attgaaatgg aacagcacct ttcaaatttt gaagacgatc tacaggattt gagtaagttt 660 cagttcagtg aatcattaca tatacatatg ttacggttag gttggactcc agaggacgat 720 gaatgccaca aaatccaaat gtatcccgat gttgttcatc ttcctggaaa accaaatatg 780 atccaatttg cgaacggaga gtttgtggag ttagacaaag tcaaggaagc ggtcgcttat 840 tttggatcaa aaacggtatt gaacaataat ggatcaaaag tccgtccaag tttggaacaa 900 gttcacacta aatttcgatt catcagaaac cgcaaccata tggacaaact tcgggagtac 960 gagactctgg gtaaaaactt cttgttgttt ttttttctga aatagatatt ttaaggctcc 1020 accaaagcaa ataggaagag caatttggag ttcatttcga tggagctcga gaaagaagtt 1080 aggatgcata ttgaaaacgg aaaaatactc cacgactcgg ttctccgttt tttgattgct 1140 gggatcatca agaaatacaa aatcgacatc gaaaatttca ttggatcgga aagctggttg 1200 aatggttgga aagctcggtt tggaatcact tccaggaaga tcacaaaatt tgtttccacg 1260 attcgtcaca aaacgcgcga tcagattgag aaggattcca aggaatttgt gactgctgct 1320 aaccaagttt ttccattgta tcatccatcc aatatataca atgcggacca atccggattc 1380 cagatcgaga tgcatacggc tcgaactctc actttgaaag gatcgagaaa cgtccattgc 1440 gttgttggaa gtgaatcgtc gacgacacat tcttacacag tactcccgtt gatttcggca 1500 tctggcaagc ttcatcccaa attatttgtg acgctgaaag aaccaaaagg gcaattccca 1560 caaaaaggcc atttccaagc ttcaaatctt gaagttactt gccatactag ccatatcatg 1620 acgaaagaac ttatgaaagt cttctttcaa aaaatcgtgt tcgactcgtc tatgccgaag 1680 gatgctcttc tcattgtaga ttcgtggaac agctggaaag acactgccgc catcgattcg 1740 gtcacccctt catcccacaa gttgaaatta ttgacgattc ctgctggatg cactgggcgt 1800 atccaaccat gtgatgttgg catttttgga tccttcaaga aagttgtgaa gacactcacc 1860 aactatgccc aattgaccaa cagcaactac aagtttcaaa ccagggatga aactctgaag 1920 gtcagctacc tatttgtcaa acagttcaaa aaatgagttt acagctcctc tccctcgtct 1980 ggcggcagct gtgctctccg aagctcgaga agtgggcccg atatgcttgg gttgcagctg 2040 gatacgatgt gccccgtcca gcaagtttcg aaactccagc acaacttctg tttccacgag 2100 gtgtcgctgg agattgtaca atgcatggtt gctccagcac atcgtttgtg aagtgtctct 2160 attgtgaaaa attattctgt ttcgaacatt ttgtcattga ccatcacaac tgttgattga 2220 ttttgattta ttttataaaa ttttgataaa ttcagtacct ctatatcttc gaaatattga 2280 aaaaaaagta tgaaaaaaac caaaaaaaat gttaaccaca gtggggttcg aaccagtgga 2340 gtctcaccta atgagttacc ctcttaccgc tacaccacac aaccgacatt ttcctctggc 2400 gcggagggcg tataggagag gggggaaagt gcgcgcccaa atcgggcaga attttcagac 2460 gaagtttttc agcttcctgg tggggttatg acctagattt tttcgtcatc gtgttgcgga 2520 tatctcaaac tatcagtact gaaattttga gcaaattctc aacgcctctc tgaaaacact 2580 tcccttg 2587 // ID GYPSY5-I_CB repbase; DNA; CBR; 4189 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 29-JUL-2005 (Rel. 10.08, Last updated, Version 2) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; KW Cb000288; GYPSY5-I_CB; GYPSY5-LTR_CB; Gypsy clade; LTR. XX NM GYPSY5-I_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 7-1266 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-4189 RA Pavlicek A. and Jurka J.; RT "GYPSY5_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 233-233 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. The internal part contains two putative ORFs CC and thus the family was probably autonomous. Flanked by 5bp CC target CC duplications. Related to GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, CC and CC GYPSY18-I_AG. LTRs are listed as GYPSY5-LTR_CB. XX FH Key Location/Qualifiers FT CDS 37..2319 FT /product="GYPSY5-I_CB_ORF1" FT /translation="MADLTQQLASLITAFGQFVQNPASSPTSVPSNVSTRT FT SQLVESISTRIPNFSYDPDEEKTFDGWWNRYEDIITKDGSSLTEDAKVRFV FT LSKLDSKEYYHFSNRVLPATPNSLKFTDLISKLSDTFKSTSSIFRKRQEFL FT RMEYDGSSIEEYTVLVLRRFTSSEFKKMTDDQTCCMVWINGLRDSSYIDIR FT TKALQIMESKPTTTLLELEKEIKRLLDIREDSKSVCRVQQPAEVNAINRKS FT STDKSQKSQKPPPSPCFKCSGNHWARECQKKVTCLNCQKSGHIAKFCRTKV FT KGNECPKGKIKSVIIGSATNSQVNRIYRTVIINGKKLKMQMDTGADITMIS FT IKDWKLLGRPELQSPTIQVKSANHQPIAVKGFFKCHFKLNGTSASGMAHVA FT ETGTLLGTDWISKDPHFWRMLNANQVSKVSSDVGSACDYLDNMREGLKAEL FT NKQFSDVFKPELGRCTKTKASLVLKPNAQPVFRKARPVPFAAVSTVSEEIE FT RLQKAGVISPVDHSDWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPL FT PTADDIFATLNGGKYFSQIDLAEAYFQLKLDEQAKSMLCINTHKGLFRYNR FT LAFGVKSAPGSFQQVMDSMITGLDGTAAYLDDIIISGSTIEEHNKRLMALM FT KRINDYGFRIRLEKCTFLMERITFLGFVIDANGRRPDPEKIAAIDQMPPPT FT NDSQVRSFLGFIQFYGSLSRSCSSFVHHWMPLQRRMSNSNGLLNVNFHSTA FT SSRFFVPICC" FT CDS 3154..4140 FT /product="GYPSY5-I_CB_ORF2" FT /translation="MNVLLFLKIQQKNTLCSWPIPTAPWQRVHCDYAGPVN FT GRYYLVIVDAFSKWPEVIPTTSITSTATINILRRIFAQFGDPETLVTDNGT FT QFTSSQFQSFCKDRGISHLRSPPFHPQSNGQAERFVDTLKRGLGKLKGEEN FT TDTALYVFLQNYRSTPCSSSPDGSTPAENFIGRKIRTFLDQLLPNDQLLVS FT HDTEMEKQFNKQHGARRRSFIADEKVYVKNFSSINTTTWIPGIIQRHIGRT FT LYRVLVKDTVWIRHANQLRRRDNPIYIDVPLNLMDQIDVTPTPAPALTSST FT APPSPVPTPPTPMPRKSTRITRQPQRLVVQPSQKSYN" XX SQ Sequence 4189 BP; 1253 A; 1035 C; 872 G; 1029 T; 0 other; tggcgatcag gcaaaactag cggtcaggca aaggctatgg cagacctgac tcaacaactg 60 gcttccctca tcacagcttt tggacaattc gtacaaaatc cagcatcatc tcctacctct 120 gtgccatcaa atgtgtcgac tagaacgagt cagttggtgg aatctatttc gactcgaatt 180 ccgaatttct cgtacgatcc ggatgaagag aagacatttg atggatggtg gaatcgatat 240 gaagatatca tcaccaaaga tggctcttct ctcacagaag atgccaaagt caggttcgtt 300 ctatcaaaac tagattccaa agagtactac catttttcaa atcgagtact gccggcaact 360 cccaactccc tcaaattcac tgatctgatt tcaaagcttt ccgacacgtt caagtcgact 420 tcttcaatat ttcggaagcg tcaggaattt ttgagaatgg agtacgatgg atcatcgatt 480 gaagagtaca cagtcctggt actccgccgg ttcacatctt cagaattcaa gaagatgacc 540 gatgatcaaa catgttgcat ggtgtggata aatggattga gggatagcag ctacatcgat 600 attcgaacca aagcacttca aataatggaa tcgaagccta ctactacact tcttgagctg 660 gaaaaagaaa tcaagagact cctggacatc cgagaagatt ccaaaagtgt gtgcagagtt 720 caacagccag cagaggtcaa cgccatcaat cgaaaatcaa gcacggacaa atcacagaaa 780 tctcagaagc ctccaccgtc accatgcttc aaatgttctg gaaatcattg ggctagagaa 840 tgccagaaaa aggtcacatg tcttaattgt caaaagagcg gtcacatagc taaattttgc 900 agaaccaaag taaaaggcaa tgagtgtcca aaaggcaaaa ttaaatcggt cataattggt 960 tcagcaacca actcacaagt caaccgtatc tacaggacag tcattatcaa tggaaaaaag 1020 ctgaagatgc agatggatac aggtgctgat atcacgatga tcagtataaa agattggaag 1080 ctgttgggcc gtccagaact tcagtcacca acaattcaag tgaaatctgc aaaccatcaa 1140 ccgattgccg tcaaaggatt tttcaagtgt catttcaagc tgaatggtac atctgcatcg 1200 ggaatggctc atgtggcgga gaccggaact cttctgggaa ccgattggat ctccaaggat 1260 ccacattttt ggcgaatgct aaacgcaaac caagtcagca aagtttcttc cgatgttggc 1320 tcagcatgcg actacctgga caacatgcgc gaaggactta aagctgagtt gaataaacaa 1380 ttttcagatg tcttcaaacc agaacttggt cgttgtacga agacaaaagc atctctggta 1440 ctaaaaccga atgctcaacc agtattccgg aaagcccgtc cagttccatt tgccgccgtt 1500 tccactgttt ccgaagaaat tgaacgacta caaaaagctg gtgtcatttc accggtggac 1560 cactccgatt gggccgcacc aatcgtactt gtcaagaaga agaacggatc gctacggatg 1620 tgtgcagact tctcaacggg tctcaacgac gccatccaac ttcaccagca tcctcttcca 1680 actgccgacg atatcttcgc cacactaaac ggtgggaagt atttttcaca gattgatctc 1740 gccgaggctt attttcagct taagctcgac gagcaagcca agagcatgct gtgcatcaac 1800 acacacaagg gattgttccg ctataatcgg ctagcattcg gagtcaagtc ggctccagga 1860 tcgttccagc aagtgatgga ttctatgatc acgggtctcg atggcacggc agcatacctt 1920 gatgatatca tcatctcggg ttctaccatt gaagaacaca acaagaggct aatggcattg 1980 atgaagcgga tcaatgacta cggattccgg atcagactgg aaaagtgcac attcttgatg 2040 gaaaggatca catttttggg attcgtcatc gatgcaaatg gtagaagacc ggatccggag 2100 aagatagcag ccattgatca gatgccacca ccaacaaatg acagccaagt ccgatcattc 2160 ttaggattca ttcagttcta cggatctttg tctcggagtt gttcaagctt cgtccaccat 2220 tggatgccct tacaaagaag gatgtcaaat tccaatggac tcctcaatgt caattttcat 2280 tcgaccgcgt caagcagatt cttcgttccg atttgctgtt aacacattat gatccgaacc 2340 ttccgatcat cgtctctgcc gatgcctctc aatacggtat tggtgctgta atctctcata 2400 gatttccaga tggttccgag aaggcaatct accatatcag caaagctctc acagcaccac 2460 aacggaacta cagtcagatt gagaaagaag cttttggtct catcacggct gtcaccaagt 2520 tccacaaatt catctatggc cgtcacttca cactcaagac ggaccacaag ccattactat 2580 cgatttttgg agacaaaaaa ggtatacccc tttatagtgc taaccgtctc cagcgttggg 2640 cgatcatcct gctcaactac gacttctcga tcgaatacgt caacactcat gattttggcc 2700 aagcggatgc tctgtcaaga ctgatctccg aacaaatcca acagacggaa tgtgaggatc 2760 gtgtgattgc tcaagtggaa tcggaagtct tgacaaatct ggttacaaca tgtgatcaat 2820 tgcctgtgac tgctaaaatg attcgagcat cgtccaagaa ggatcctctg ctgaatcaag 2880 tataccagta cactatctca ggttcgtggc ccaaaatctc tgataaaact tcacaattat 2940 ctcttttcca caaccgacgt gatcaactct ccatcgtgtc cgaatgtttg atgttcaatg 3000 gtcgaatcgt gataccacat gctctgagat cccgagtcct caaaatgata catcgtgctc 3060 acccaggaat tgtgaggatg aaacaattgg caagatcact agtctattgg ccagccattg 3120 ataaggatat cgagaaaatg gtacgtagtt gtgatgaatg tgcttctgtt tctaaaaatc 3180 caacaaaaaa atactttgtg ctcctggccg attccaacag ctccatggca acgcgttcac 3240 tgcgactatg ccggaccagt taatggacgc tactacttgg taatcgtgga cgcattttcc 3300 aaatggccgg aagtcatccc aaccacatcc ataacatcca cagctactat caacatattg 3360 agacgaattt ttgcacaatt tggagatccg gagacactgg tgaccgacaa cggcacacaa 3420 ttcacgtcat ctcaatttca aagcttctgc aaagatcgag gaatcagtca cctgcgatca 3480 ccaccgttcc atcctcagtc aaatggacaa gcagaaagat ttgtggatac cctgaaaagg 3540 ggattaggca agttgaaggg ggaggaaaac acagatactg ccttatatgt gttcctccag 3600 aactaccgtt ccactccttg ctcatccagc ccagatggct ccacacctgc tgagaacttc 3660 attggtcgga agatccgcac ctttttggat caattgcttc ccaacgacca acttctcgtc 3720 tcgcatgaca cagagatgga gaagcagttc aacaaacagc atggtgcccg gcgacgcagt 3780 tttatagccg atgaaaaggt ttatgttaaa aacttcagta gcataaatac taccacttgg 3840 attccaggaa tcattcaaag acacattgga cgaacgttgt atcgagtgct cgtcaaggat 3900 actgtatgga tcagacacgc caatcaactc cgtcgacgcg acaacccaat ctacatagac 3960 gtgccactga acctgatgga tcaaattgat gtgacaccaa cacccgctcc agctctaacc 4020 agttccaccg ctccaccatc tccagtaccg actcccccca ctccgatgcc acggaagtct 4080 acccgcatca ccaggcaacc tcaacgactg gtcgtgcagc cgagtcagaa atcgtataat 4140 taatttctgt acctctattc atctttctct tccaacttaa aaagggagg 4189 // ID HELITRON5_CB repbase; DNA; CBR; 1583 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000203; DNA; KW HELITRON class; HELITRON5_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1174 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1583 RA Pavlicek A. and Jurka J.; RT "HELITRON5_CB - a family of nonautonomous HELITRON transposons."; RL Repbase Reports 4(10), 272-272 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. The consensus was reconstructed from three CC sequences. CC HELITRON5_CB is flanked by TC-CTGG termini and contains an CC imperfect palindrome in positions ~1051-1509. XX SQ Sequence 1583 BP; 527 A; 270 C; 269 G; 512 T; 5 other; tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg tatcacctag 60 cctagagaag tcaataatgg accaaaattt cccaaatttt cacagataac ccgaaatagc 120 agcgagatga tgcccgcata ttttattttc cgaaactttt tctgacgtct tctggagacg 180 ttcttccatt tctagatttt gagaaaagtc taaccncnca aatttttttc ttatccacgc 240 tatttctgat agtgagaaaa cggtgttttt tcgaagaatt atttcagtct gggttttgaa 300 gatttgaaag agagaaaaaa ttctgaaaca gttcaaattn agagtttcta agttttcgaa 360 gtttagaaat ttctaattct taaatctaaa tttttgaatt tccgaagttc caaaaacttt 420 ttgacgagac tgtgtttttt ttgaaaagtt gaacttctga atttcgaatt tttacatgtt 480 ctcaaatgct tgaatttctg aactcagaga gccgtggcct ggaaacaaaa aacaaaccca 540 aacttcaaaa aacacactaa tttgatattt tccttgcata attatgagca ttatgagcgg 600 gagatgtcca gtcgttttgg aatttctcta tttctaggtc tctgaatttc tatttttccg 660 aataactccc gatttttgag gcagaagttc ccaaatttct gattaacaga aataagaatt 720 gaaaattcag aaatccggaa atcttgaagt tcgagaattg ggtacatgga aagcaagact 780 cttgataatt cagaaatcag tgaatttgaa aatttgnaaa tttgaaatat aggaaattta 840 gaaaatctag attggggtac ttccgagttc gaactttctc aatttctaaa ctatcgaaat 900 gccatacatc gagcagagcc gtctcaggtc ggcccggcat ttagtaagta tgagaaattc 960 tgatttttta agttcctgaa aatcggaaac actaaataca aaaatttcag acactcagat 1020 tttcggaaag ttgaaacact ttctagattt caaagttaaa actttcgtac ttccgatttt 1080 caaaatttac taatctctga ttttccgaat gtcttacttt tccaatttcc ggactaattc 1140 cgaaatgttt aacttcgaaa ttaccgaaat tctgaatttc ctatctcgaa tttcggaaac 1200 actgaaatta aaaattttct gatataatta cggacaatgt aagtgagagc caggatatgc 1260 agccccgtag ggacgcaatn gtttttcaaa actgaaaatt ttcgaaattc ggaacaggta 1320 accaggaact tcagtgatcc tgaattttag atatccaaaa atttgaaatt tcaaaaaacc 1380 gggaattcac atactccata ttatgacctt caaaaattcc gtcttcagta gtttggaaat 1440 tttgaaaatt tggaaaacca aatattaaaa aattttgatt acttcgaaaa ttcggaaatt 1500 tgaaatatgg gaaattcaat tgtaagatac agtaagcgga agccaggagg ttgagccccc 1560 gacagggggc gtaaaccgac tgg 1583 // ID HELITRON12_CB repbase; DNA; CBR; 279 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000372; KW Cb000512; Cb000526; DNA; HELITRON class; HELITRON12_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-279 RA Pavlicek A. and Jurka J.; RT "HELITRON12_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 265-265 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 89% identical to the consensus. CC HELITRON12_CB is flanked by TC-CTGG termini and contains a CC palindrome-like sequence in positions ~242-279. HELITRON12_CB is CC closely related to HELITRON13_CB and distantly to HELITRON11_CB, CC HELITRON10_CB, HELITRON5_CB, HELITRON4_CB, and HELITRON6_CB. XX SQ Sequence 279 BP; 72 A; 55 C; 74 G; 78 T; 0 other; tcattactaa taacattcac cagattctgt atgtgcgtat gtatgtagcg caccttatca 60 cccattcaaa gttaaccgat caagctgaaa cctggacaga tagatcagaa ttgtgtctta 120 gttgatgccc gaacttttgg tttttcgaaa ttttgatttt gaagtcttct ggagacgttc 180 cttggtttca cctcagtaaa gggtggtggg cagaaaggcg atggtggagg gcgaccggaa 240 gccaggaggt ttagccccga aggggcgtaa accgactgg 279 // ID MUDR5A_CB repbase; DNA; CBR; 5229 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000282; DNA; KW MUDR superfamily; MUDR5A_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-5213 RA Pavlicek A. and Jurka J.; RT "MUDR5A_CB - a family of nonautonomous MUDR-like transposons."; RL Repbase Reports 4(8), 215-215 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99% identical to the consensus. CC Contains 220bp-long TIRs and is flanked by 9bp target CC duplications. CC The central part contains an ORF with no clear similarity to CC known CC transposases. One variant listed as MUDR5B_CB. CC MUDR5A_CB_ORF: 3719-4430 (237 aa) CC MPRSSEYSRKVLDFTVEEFANQINQRRKRRKKIPDRKYSKRSHNNGGRTVSEFKKVNRNVSGESESGDDE CC RKADGNISSDEENDSDCDVNSLNSKPNVFDESGDIVEDEINCNSNDEHVNLVLDPSVDHLNSHDSCMDLS CC DDPRKYDSDSDEENDIFGYQNVNPVPKPSNRVSNDHSSQIDLRDVLGEKGSRKPESDSEEVTDVSTGQHV CC KPMSLKEKFPIGYMHRLSDDSDDSETK. XX SQ Sequence 5229 BP; 1688 A; 923 C; 1047 G; 1571 T; 0 other; gccaaaaatt cggggggtac aatgattcgg gggtacaagg gggtacaact gatttagggg 60 tacaaaattg atgattcggg ggtaaaaaat tcgtgggtac aaaaattcgg gggtacaacg 120 attcgggggt acaaactacc aatgattctg gggtacaact catttcattt aggggtacaa 180 cgcttgtgat tcgggggtac aatttttttt gagggagttt ctgaattcct gaatttcaga 240 actttggaat ttcagtattt cggaacctga gaatttcgga acttcacagt ctgagaattt 300 cagattttca gcacttcaaa atctcagaaa ctcggacaga atttcggtcc attctccagg 360 ggtacatcga aatagggtac atcatgctca aggggtacat tgactgagtg ggtacgcagt 420 ctgaaggggt acatctaggt agttgcacaa aaacaaaaag ttcggatctg gtcgagattg 480 aactcgcgac ttcagttttt cgtgcaccca cgcgcaccac tacaccaatt cacccagttt 540 cccttctcaa ccgcaacccg tacatattcg gtggtttcta aagcaggaag aaagtgaaag 600 aggttgagaa aaaacaactt ccggaagatt tcccacgact atatctgaaa gtggacacaa 660 cgtaatttaa aattcaattc ggcactgaaa tttttctgtt agatttcatt tagttttttt 720 ttcacttctg tagtttacaa aactttgtag agatgaagga aaaaccaatg aaaaggcatg 780 aattccgaat tctgacagca aaactatgaa aaaaaaacct attatttgtc ttccgaaatc 840 agaaataaat cggaaattaa gggatttttg tctgaaaaaa attattttta ggccaggatt 900 ttgatttcag ctgattccat cgtcgtttcc aatcgctcac ttctgtactt tatctgtcag 960 tgtttaaaac aattttttat ataagaaatt tgcttttttt tctcgaaaat gtgtctttta 1020 ctgtgagttc tgtgtttgaa tcccaaaaaa ttgctcgaaa ttctcatgga agagtttccg 1080 gaattttcta ggccaggggc cgttgtcgat ttacgaaggc aattttttct atttttcctc 1140 ctattttctc gattttcaac gattttcgac tgtttttcgt attttttttt gcagaaattt 1200 gtggaagatt atgaattttt ggctatcaca gtagttctgg tcaccatttt cagtcctaga 1260 ctcatttttc gtatgacgta atcgatgacg tcatatgacg taatcgatga cgtatttttg 1320 aactaccaat tgtcctattt tttcgttttt catctttttt tcagaacgtt tttgtgattt 1380 tacaaaaatc tcaaaatgga cgagagtgat tctgaaatta aaatgtcgag tgacggccaa 1440 aatgaaccag aaaaaacgaa aatatctgcc aaaggagaac caataaaaga attttcgctt 1500 gatttggatg aggatggcat atggagaaca ggtccctatt cgaacaaatt ttcagttaaa 1560 acgatgaaag atatcattga aaactggtca gttgaaaaag aaaatttaat tttaaaacca 1620 agttatctgt ttcagtgtga catcgtcaaa tctcaccgat tttcgtttgc cagtgttttc 1680 ggaaccgtca gtgaaattcg caaaatttcg aaacgaagat cataaacttt gtgatggact 1740 gtcttggtgg aagacaacga atggtaggat cagctgattt tcaattcatt tttattattt 1800 tcttttcagg tagaaaaatc cgtccgagac ccagaaagat cgaatacgat ggatgctctt 1860 acagatatta caattgcatc aatcctaatg atgatgcttt caaaaaattt gagatttatc 1920 cggagaagga agagttcttt ttcgtagtat acgtgtctca aaatggtcga atggactacg 1980 atgttctgaa atcatcaaaa cctaacagac taactggtaa gaacaacttt gctctaataa 2040 aagcgtttat ataaaattca aatattcaga agcagagtgt caattgattc atcggtccct 2100 gaaaggaaga actgtgaaag gagctttcga agatctaaaa tcaggagccc ttaatttcag 2160 tacccgccaa atcagaaacc agatgaagta tcagccggat tgtgtgaagt cgaagagggg 2220 ccgcgtgagc gtgacaacac cagaatcact cgcatctttt ggaacagaaa atggcttccg 2280 tctattttct agtggtaaac aggaacgttt ttttgaaaat ataatttttt cattttagat 2340 aaccagtttg gagcgattta tctcgattcg gacacactga atctttatat gaatagtcta 2400 ccgacaaaac aaactgtact ggaatataga aagcttttaa ctggatgcga agattggact 2460 tcagaagaag tcaatgattt tttatcttgt tacagtccga cagcaaatag tgggattatt 2520 aagcatatgg ctggacagtt acagattgat agcacttttg atttgtcaga ttgtgttgtg 2580 acaacaatct ctggagatat aggagacttc acatcgcgct gcagcggaaa aattcgccat 2640 gttcttttag gattcatgat ttcctcgtcg aaaaatgcac taaatcacaa gagttttgct 2700 cgcgaaattg acgatttctt cctgcaagtt gatcctatgc gaaaaaaatc aattccatca 2760 ctgatgacag acggcgaaga atcttttaaa tattacagca aggtatagaa aactttaaat 2820 ttgtgtagtc tcatgtttct ttcagatgaa atatttggaa gacactcaag ttctcaggtg 2880 tctagtacat cgtcgaaaca acttgacatt cattcaaagt aaaaagaata taagccagtc 2940 agatttgaac aaaattttcg gaagacagat tggagatgaa gttgaaaatg gaattttcaa 3000 tgtaatgagt tcagaagcga tggaagcgga gattgtcaag tgtaattttg cgccggctct 3060 aaagaagtgg ttgctcgata gaaaagaaga tctcttttca acccattctc tccgatctcg 3120 tctgatggct gggctgcttc taaactatgc atctacgaat cgaattgaga accttaattc 3180 acgaatcaaa attgcgattc cacgaaaact aaatggacgc acttgcttgg ataagctgtt 3240 ggaatttatc gagggtaggg ttgactgtaa aaacatctaa agttggatat gttttacaga 3300 tgagaaaaag gaattttgca agtcgatttt gactggaaag agcgagctga tccgatacgc 3360 gaatttcaaa aaaaccggaa ttttgtcagc acaaagtcaa gttaaagctt tgcaaaaaca 3420 tggatttcgt actttttcgt tatctcatgt gtttgaaatg ccgaaaaccg tatggagaag 3480 tgtgccgaaa cagatgaaaa ttggagaagt cttcaataag aacgtaatct accataaatc 3540 cggtcagtat cttgtggaga aagatgacaa acgttttttg ttgtgaaaac gaccgaaaca 3600 aatatcgaat gcaaggatcc caagtgtgct tcaaaacctg ctatcacttg ctcacatgtg 3660 tatgtttgaa ttgcgttcat actggagtat gttttttttt agcttcgctg tactcagtac 3720 actgccaacg aaaaaatgcc aagaagttct gaatattcgc gaaaagttct tgatttcact 3780 gtcgaggagt ttgcaaatca aatcaatcaa cgacggaaaa gacgcaaaag atacccgacc 3840 ggaagtactc taaaaggtca cataataacg gcgggagaac tgtatccgaa ttcaagaagg 3900 tcaatagaaa tgtctctggc gagtctgaaa gcggtgatga tgaaaggaaa gcagatggga 3960 atatttctag tgatgaggaa aatgacagtg attgtgatgt gaatagcttg aattctaaac 4020 ccaatgtctt cgatgagtcg ggagatatcg tcgaggatga aattaattgt aattccaatg 4080 atgaacatgt caatctagtc cttgaccctt ctgtggatca cttgaactct catgattctt 4140 gcatggatct ttctgatgat ccaagaaagt atgacagcga ttctgatgag gagaatgata 4200 ttttcggata tcagaatgtc aatccagtgc cgaagccatc aaatcgtgtc tcgaatgatc 4260 atagttcaca gatcgatctt cgtgatgttc ttggagaaaa gggctcgaga aagcctgaaa 4320 gcgattctga agaagtgacc gatgtttcca caggacaaca tgtgaaacca atgtctctca 4380 aagaaaagtt tccgattgga tacatgcatc gactttcgga tgattcagac gacagtgaga 4440 caaagtgagc gactcattta aatgttcaat cagctcatta atatattaca gagacaccga 4500 aacaacacca gaagactgtc catcaccgcc tagaaagaag tcaaagagaa actcaggtcc 4560 tccttcccgc taccaagctt ccttcaaata aaccccaatt ggcttcaatt tttttttctc 4620 atcttaaggt cattcttaat tgtctaatcc tttttttttt gtttttgcat tctttgttgt 4680 tgctgttgtg ttgttcaact atgaattgtt gccacataaa attgttctgt tttgtcttta 4740 aaacattgaa aaaaaattga atccgaatta tcaaaattat ttaaaaaata agaaaaattt 4800 caattaccac gaaaattgag aaaagttgag aaaaaatgga aaatggagaa aaaccgaaat 4860 attgcgaaaa aacggaaaat tgggaagaac ggaggaatat ggaaaaaagg aagatgagaa 4920 aaattcagaa gttccaaaat tcgtagattc tgaaatttca aaattctgaa gttctgaaac 4980 tctgatgttt tcgagctctg aaattcagaa actccctcaa aaaaaattgt acccccgaat 5040 cacaagcgtt gtacccctaa atgaaatgag ttgtacccca gaatcattgg tagtttgtac 5100 ccccgaatcg ttgtaccccc gaatttttgt acccacgaat tttttacccc cgaatcatca 5160 attttgtacc cctaaatcag ttgtaccccc ttgtaccccc gaatcattgt accccccgaa 5220 ttttttgcc 5229 // ID MuDR-12A_CB repbase; DNA; CBR; 365 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 03-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW MuDR-12A_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-365 RA Pavlicek A. and Jurka J.; RT "MuDR-12A_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 86-86 (2005). XX DR [1] (Consensus) XX CC MuDR-12A_CB copies are 97% identical to the consensus. Contains CC 12 bp TIRs and is flanked by 8 bp target duplications. Similar to CC MuDR-11_CB, MuDR-14_CB, MuDR-10_CB, MuDR-11_CB, and MuDR-13_CB. CC MuDR-12B_CB is a subfamily of MuDR-12A_CB. XX SQ Sequence 365 BP; 94 A; 91 C; 87 G; 92 T; 1 other; catacttgtg aagggccggg ccgggccggg ccgaaacacg aatttcaccg gcccggccgg 60 cccggcccgg aggcccggtc ggcccggaag tttaccgcga acttcaaaat cttgagcgaa 120 aagttgaatc attgtttcga aaaaaggtat tcagtgtttt ttttcttcga gttatttttc 180 aatacattct aaaaatcaat aaattcatgg cggctgtttc aanaacaaaa acaaaattca 240 aaaacaaaaa ttcatttttc aaaaattttg ttttttttct gccgggccgc cgggccgggc 300 cgggccctga aaattttctc tcggcccggc cccgggccgg gccgggccga aatttcacaa 360 gtatg 365 // ID MARINER53_CB repbase; DNA; CBR; 400 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000186; DNA; MARINER53_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 187-400 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-400 RA Pavlicek A. and Jurka J.; RT "MARINER53_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 302-302 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~94% identical to the consensus. CC MARINER53_CB contains ~185bp-long TIRs, flanked by TNA target CC duplications. Similar to MARINER49_CB. XX SQ Sequence 400 BP; 121 A; 75 C; 83 G; 121 T; 0 other; ctagggaagg ttgtgaactt aggttggagt ttcgggtcga gacctatatc attcgaaagc 60 tgagaacacg ccctttccga atctgttttt cgtttttgct gcggacctac cagtttcgag 120 aaaaataggt tttaaatttg ggttactctg gattttctac tgatttcttc aattaaaatg 180 ggaattttgg atcgcgtgaa cactaaatac ttaaatacaa ttgaaacaat agaaaatgtc 240 gattgaatgg ctcagtggtc taaatttaaa acttattttt ctcgaaactg gtaggtccgc 300 agcaaaaacg aaaaacagat tcggaaagga cgtgtcctca gctttcgaat gatataggtc 360 tcgaccggaa actccaacct aagttcacaa ccttccctag 400 // ID MuDR-17_CB repbase; DNA; CBR; 400 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE MuDR-17_CB - a family of nonautonomous MUDR-like transposons. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000012; MuDR-17_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 4-398 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-400 RA Pavlicek A. and Jurka J.; RT "MuDR-17_CB - a family of nonautonomous MUDR-like transposons."; RL Repbase Reports 6(1), 44-44 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 94% identical to the consensus. The CC internal part shares short similarity to MuDR-11_CB. MuDR-17_CB CC is flanked by 8bp-long target site duplications. XX SQ Sequence 400 BP; 118 A; 89 C; 90 G; 103 T; 0 other; ccatacttgt aatccgggcc tttgccgggc cttcgcgggc cctgccataa cttctttcag 60 aatcaatgtt ttcgaaccaa ctcaatcaga tatgatagag ctccacgagt actacaaaac 120 ggtattattt ggaatactgt atcttgtcta tgaacagagt tacagagcaa aaggagcaaa 180 aaaaagcagg cccggcccgg gcctgccggg ccctgcgaga aaagccactt tatgatctgt 240 aactttgttc atagataaga tacagtattc caaataatac cgttttgtag tactcgtgga 300 gctctatcat atctgattta gttggttcga aaatatagat tctgaaagaa attatggcag 360 ggcccgcgaa ggcccggcaa aggcccggat tacaagtatg 400 // ID MARINER32_CB repbase; DNA; CBR; 1231 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000297; DNA; KW MARINER32_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1231 RA Pavlicek A. and Jurka J.; RT "MARINER32_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 87% identical to the consensus. CC MARINER32_CB contains 31bp-long TIRs and is flanked by TA CC target duplications. Distantly Similar to MARINER1, HSMAR1, CC MARINER12_CB, MARINER18_CB, MARINER2_CE, and MARINER_DMA. XX SQ Sequence 1231 BP; 369 A; 222 C; 213 G; 424 T; 3 other; ttagggtgtt cagtaaataa tgtcgttttt tggtaccact cttcaaacaa aaataacttc 60 agtgaaactt atgttcatca aacaaactat gtaccattcg aatcagtaca tttttgccta 120 caatatacta atttgaaaat tacatgatga tagaaaccaa aaggccagga agtgacgaaa 180 ccttggaaag ccttttttac atagtcgtct ttaatgaact ggttttctct ggtgaggtaa 240 tcaagatgtt tgaaaatgtg gtaatcaatt gaggagatgt cggcaagtat gttggataac 300 taataatttt gtaacccaac gtattcagtt tttgagccgt catgattgca acatgtgaaa 360 tggagttgtt gtcgagtagg attgtgccan tttttttgac taatgatctc aatttggata 420 acaaattttt tctatttttt gacaattgag aaccgaaatg ttagtttttc atcttttcag 480 gacgttataa tgaataaaac cgaaagcccg ccatcataaa gtcaccataa cctcgttttg 540 gtaaatttct ggctttatga gatgttgtac cttctggctt tcgaccacat atggcgctga 600 ttgcattctg ttgtagtata aaaacctttc tttatcatac gtcacaattc gattcaaaaa 660 attatcattt ttctatcgta tgagatgatc tcgcaaacta gagtaacgtt gcaatttctg 720 gcaattgttc agttcatgag aaacccattt atctagtttt ttttgtattc tcaatttttt 780 atatatgtct caaaattgtt cctatactga ctccaagcgc tgccaaaagt tcccggacag 840 tcgatctcgg atccccttcc accatacttc ataattcctt ccacgatcct ttttttcttc 900 gagaggtgta tctccacatg tgaattttgt gaaccatcgt tgtactgttt tttttgttag 960 cacttctttc tgcaaaagca cggttaatat tttcggttgt ctcggttgca tttcggcaga 1020 gcacgggttc gtattaaaaa gcagccaaaa atgcacttat tttccatnat ttctcctcga 1080 agaaccgaga acattatgac acatgttagg taagaatttt tgacgacttg attaggtgtg 1140 tnagaaacaa aaaaaatttt gatattagaa cgagccatcg cagagaaaat tgcgcacgaa 1200 aaaaaacgac attatttact gaacacccta a 1231 // ID MINISAT6_CB repbase; DNA; CBR; 90 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeat. XX KW MSAT; Satellite; Simple Repeat; Cb000480; MINISAT6_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-90 RA Pavlicek A. and Jurka J.; RT "MINISAT6_CB - minisatellite repeat."; RL Direct Submission to Repbase Update (SEP-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT6_CB contains repetition of a 30bp CC motif CCATCTTCAACTATCACCTCTGAACCTACT. The consensus contains CC three copies of the unit. XX SQ Sequence 90 BP; 24 A; 36 C; 3 G; 27 T; 0 other; ccatcttcaa ctatcacctc tgaacctact ccatcttcaa ctatcacctc tgaacctact 60 ccatcttcaa ctatcacctc tgaacctact 90 // ID MUDR7_CB repbase; DNA; CBR; 200 BP. XX AC . XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 15-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000009; DNA; KW MUDR superfamily; MUDR7_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-200 RA Pavlicek A. and Jurka J.; RT "MUDR7_CB - a family of nonautonomous MUDR-like transposons."; RL Direct Submission to Repbase Update (AUG-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 91% identical to the consensus. CC MUDR7_CB has a palindromic-like structure and is flanked by CC 9bp-long target site duplications. Related to MUDR6_CB, CC MUDR5A_CB, and MUDR5B_CB. XX SQ Sequence 200 BP; 57 A; 43 C; 43 G; 57 T; 0 other; ggcacataat tcggagggta caacaattcg ggggtacaag ggggtacaaa gtgatttagg 60 ggtacaaaat ccacaattcg ggggtacaaa actaagcctt ttttcaggta ttttgtaccc 120 ccgaattgag gattttgtac ccctaaattg ctttgtaccc caatgacccc aaaatttttg 180 taccctccga attatttgcc 200 // ID MINISAT4_CB repbase; DNA; CBR; 500 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeats. XX KW MSAT; Satellite; Simple Repeat; Cb000161; MINISAT4_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-500 RA Pavlicek A. and Jurka J.; RT "MINISAT4_CB - minisatellite repeat."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT1_CB composed of 8bp-long repeated CC TCAGAATT units. The consensus contains multiple units. XX SQ Sequence 500 BP; 187 A; 72 C; 62 G; 179 T; 0 other; tcagaatctc agaatctcag aatttcagaa tttcagaatc tcagaatctc agaatctcag 60 aatctcagaa tctcagaatt tcagaatctc agaatttcag aatttcagaa tttcagaatt 120 tcagaatttc agaatttcag aatttcagaa tttcagaatt tcagaatttc agaatttcag 180 aatttcagaa tttcagaatt tcagaatttc agaatctcag aatttcagaa tttcagaatt 240 tcagaatttc agaatttcag aatttcagaa tttcagaatt tcagaatttc agaatttcag 300 aatttcagaa tttcagaatt tcagaatttc agaatttcag aatttcagaa tttcagaatt 360 tcagaatttc agaatttcag aattttcaga atttcagaat ttcagaattt cagaatttca 420 gaatttcaga atttcagaat ttcagaattt cagaatttca gaatttcaga atttcagaat 480 ttcagaattt cagaatttca 500 // ID MARINER2_CB repbase; DNA; CBR; 387 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000002; DNA; KW MARINER2_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-387 RA Pavlicek A. and Jurka J.; RT "MARINER2_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 93% identical to the consensus. CC MARINER2_CB contains 37bp-long TIRs and is flanked by TA target CC site duplications. XX SQ Sequence 387 BP; 128 A; 70 C; 77 G; 112 T; 0 other; ttactctcgt ccgaaatcaa tgcacgttgc ggccgaaaat ttactcaaaa tcgcatcgtc 60 ggtcgcacag cgaaaaaaac aaattgatgc atgcgccttt aaataccgta cctcggacgt 120 ttttttattt tgggccctat ttggctgttt tttttctatt ttataagaaa aataaattaa 180 agatttataa gaattacaca aaattagaca gaaacaagcg aaaaaatgag agaaatttga 240 aggcgaaaat tcgataaatg ttgaggtact gtattaaagg cgcgtgcaat aatttgaaaa 300 atacagtaag gttctctctg tgggagctaa gctccgccca ccgttgtttt ctcggccgca 360 acgtgcattg atttcggaca agagtaa 387 // ID MARINER64_CB repbase; DNA; CBR; 165 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW Cb000065; MARINER64_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-165 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-165 RA Pavlicek A. and Jurka J.; RT "MARINER64_CB - a family of nonautonomous mariner/Tc1-like RT transposon."; RL Repbase Reports 6(1), 35-35 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 90% identical to the consensus. CC MARINER64_CB is flanked by TA target duplications and contains CC ~30bp-long TIRs. The central part is ~80% similar to CC Mariner-N1_CB, but termini are different. XX SQ Sequence 165 BP; 48 A; 37 C; 29 G; 51 T; 0 other; ttattgttgt ccgaaaaaat tggagttgag acgcagacag ttaatcgaaa aatttctctg 60 cgtctccacc gactatgtgc tatttaggct tgtcgcttcg aggtgcctac cgtattcaga 120 ctgcaaaaaa tactctctaa ctccaatttt ttcgcacaac aataa 165 // ID HELITRON9A_CB repbase; DNA; CBR; 1543 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000167; DNA; KW HELITRON class; HELITRON9A_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 422-1442 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1543 RA Pavlicek A. and Jurka J.; RT "HELITRON9A_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 276-276 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 86% identical to the consensus. CC HELITRON9A_CB is flanked by TC-CTGG termini and inserts between CC 5'T and 3'A. Shares termini with HELITRON9B_CB, HELITRON9C_CB, CC and HELITRON9D_CB. Related to HELITRON3_CB. XX SQ Sequence 1543 BP; 525 A; 267 C; 230 G; 521 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgtccgg tgttcccggt tctgagaccg 60 tagcgaactc accactggac caaaatttcc caaattttca cagatgaccc gaaatagcag 120 cgagatgatg cccgtctatt ttaaattttc gatattcaat ttttgacgtc ttctggatat 180 gatcttctac ttctacagtg caaatcttta gaaattattt tcacgccatt cccgcccatc 240 cccctatttt ttcctatcca gttatatcaa acaaaaagat gattttgtgc gaagagatat 300 tcagtctggg ttctgaagat ttgaaagtat ctaaaaatta tgataagaaa tcagagaaaa 360 atacaagctc cctcaaagat caatacgaac gcgttcaatg tagtctttga acttcttagg 420 ctttaagttt taagaaatta aaatctttcg aatttcgaag gttttgaatt cccaaatttt 480 ccaaattttt aaatgctgaa actatagaaa cctggatttt tagaactata aatttccaaa 540 ttccaaaagt gaattcagaa attcctgaaa attcgcaaaa atcggaaact gaagatcaga 600 aaggcagaat ctcaaaaaaa aatcagaaac ccagaaattc agaaattaag agtctcaaaa 660 aactaaaatt tctgagatta aattcttgaa tttcagtcct aatttggtaa ttcggaaatt 720 cgaaaaaaca aaaatcaaaa cttcagaatc ttaaaaatca gaatttcaga atttcagaac 780 ttcagaaact cagaaattag gaaattcgaa aaatcagaat ttctgaatca tgaatccctg 840 aattttcaaa tttgtgaact gctgaatttc tgaacctctg aacttttttt gaaaaattta 900 aaaacttcct aactcctaag tttctctgaa attttgagtt tttgaacttt ttcaattctg 960 aactcatgaa attcgatttt tagatttttt ttttcgaaat tttgttccca aaatttttag 1020 tcgctgtttt gaagtgaaac gattttctgg atttcaaatt ttaagagtta aaaaatttcc 1080 gatcttaatt atgaatggct ttataggcta tattcctgaa tttgccaaaa atttgcaaaa 1140 ttggttttgg gatttcagaa gttccagatt tgtagaattt ctgaatttca gaattttcga 1200 acttctaaat ttgcgaattt gagagttaca gaagttttgt tagacttatt tccttcatca 1260 caatgtctaa gcttatatgc attaaaaaca cttttcatta actgactttt cgaattctca 1320 aaaattcaaa tctcctcata tccgagatgt taaattccga aactaccgag atcctgagtt 1380 tccaaaaaat cattttttaa gctcaaaatt tcctaatttt cgaatttgtg agcataggcc 1440 ctaaaaaata gcccctgtaa aagtgacgga ctctctttat tagattacgg gtattgtaag 1500 cggggccagg aggtttagcc ccgaaggggc gtaaaccgac tgg 1543 // ID HAT20_CB repbase; DNA; CBR; 652 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000052; KW DNA; HAT20_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 17-652 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-652 RA Pavlicek A. and Jurka J.; RT "HAT20_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(4), 175-175 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC HAT20_CB contains ~260nt long TIRs and is flanked by 8bp-long CC target duplications. CC TIRs related to HAT18_CB. XX SQ Sequence 652 BP; 223 A; 119 C; 116 G; 194 T; 0 other; ggctctatat gatttcagcg gtccctagag aaaataacgg tccgcagtga aaaaagcggt 60 ccgcagggaa aataatggtc caaaaagaaa ataacggtcc ggagcgaagt ttgcgtttgg 120 gaattcagga aaaccccata aatcctgttt ttattgaatt ttcaattacc aatcgaattt 180 ttatgttgtt ttgttagttt tttttacgcc catgtgttcc gtactatcat taagacaaca 240 caatgtttta ttataacgga cataacatat caaaatgcaa gagaacacca agatgaagat 300 gaacagatgt atgaacaaaa tgaaggcatt gagaatgaaa caaacgaaaa ttattactaa 360 caagctgttc actttttctc taaatactgc tccgttataa taaacattgt gttgtcttaa 420 tgatagtacg aaatttcaca tgggcgtaaa aaaaaccaac aaaacaacat aaaaattcga 480 ttggtaattg aaaattcaat aaaaacagga tttatggggt tttcctgaat tcccaaacgc 540 aaacttcgct ccggaccgtt attttctttt tggaccatta ttttccctgc ggaccgctat 600 tttcactgcg gaccgttatt ttctctaggg accgctgaaa tcatatagag cc 652 // ID MuDR-11_CB repbase; DNA; CBR; 370 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 02-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000140; MuDR-11_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-370 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-370 RA Pavlicek A. and Jurka J.; RT "MuDR-11_CB - a family of nonautonomous MuDR-like transposons."; RL Direct Submission to Repbase Update (28-APR-2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~90-97% identical to the consensus. CC MuDR-11_CB contains 28 bp-long imperfect TIRs and is flanked by 8 CC bp target duplications. Similar to MuDR-12A_CB, MuDR-13_CB, and CC MuDR-14_CB. XX SQ Sequence 370 BP; 96 A; 86 C; 90 G; 98 T; 0 other; catacttgta acgggccggg ccgggccggg ctttttcccg aatttcggag gcccggcccg 60 gcccggcggg cctgtcattc cacaagtttt gaaaatttca aaaaacacat aaggggggac 120 ccttatgtga tttttttcga tcaaaaattt tttttcgagt ttttttttga tattttttga 180 tcaaacagac aaacaatcca aaaagcacaa aaaaataatg gagaaaattg tattgagagc 240 tcaaaatttg gctcaaaatg acaaaatttt tgctaccggg ccttccgggc cgggcccggg 300 ccttgaaaat ttcctcaggc ccggcccggg cccgggcttt ggcgggccgg cccggaattt 360 tacaagtatg 370 // ID HAT13_CB repbase; DNA; CBR; 916 BP. XX AC . XX DT 30-JUN-2005 (Rel. 10.06, Created) DT 30-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE HAT13_CB - a family of nonautonomous hAT-like transposons. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000418; HAT13_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-313 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), E45-E45 (2003). XX RN [2] RP 1-916 RA Pavlicek A. and Jurka J.; RT "HAT13_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 5(6), 143-143 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 96% identical to the consensus. HAT13_CB CC contains 18bp-long TIRs and is flanked by 8bp target CC duplications. Related to HAT12_CB, HAT3_CB. The central part is CC similar to MARINER38B_CB. XX SQ Sequence 916 BP; 255 A; 156 C; 177 G; 328 T; 0 other; taaggttccg tttcaaatgt ttttttgaaa cttttgacga gaagttgact attcgtttaa 60 atttctcacg caacaatcaa aaattttcaa gcctcaaaat aatcaaaagc gtcaaaatgt 120 caaaagagtc gttttcaaaa taattataaa attcaaaagg tcaaaagagt catttgtcaa 180 aagattcaaa ttgaaattcg ttgactttag tcaattatga ttaaaatgca tcaaaagggt 240 cgaagatgat ttttatgcga ataggtgaaa gtgtgaaaca acgaaatgtg gtatagtagt 300 gagaagcaga gatgtcctgc ttccggattc cggattccgg tattccggtt actggattcc 360 gtattccgta ttccgtattc cgtattccgg attctggatt ccggattccg gattctggat 420 tctggattcc ggattccgga ttctggattc cggattccgg attccggatt ctggattctg 480 gattccgtat tccgtattcc gtattccgga ttccgtattc cgtattctgg attctggatt 540 ccggattctg gattctggat tccggattct ggattctgga ttctggattc cggattctgg 600 actttccgga gaataataat agcgttgtaa tcagcctgtt tgagggtact actgattatt 660 tttcgtaact ttcgaagtta tccgacactt ccgactcttc ttgaagcatt taacactttt 720 gacgaaatat gatttccact atttttcatt tgccacgttc gactattttg acgattcact 780 tttttttgat tttgaaacgt ttgactattt tgatgattat tttccgtgag aaaaaattat 840 ttttgagcaa tttgattaat caaaagtgtc aaatttcacg tgatttcata aatgaaaaat 900 ttgaaacgga acctta 916 // ID HAT1_CB repbase; DNA; CBR; 887 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000188; DNA; HAT1_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-887 RA Pavlicek A. and Jurka J.; RT "HAT1_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 4(4), 108-108 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~98% identical to the consensus. CC The HAT1_CB central regions bears similarity to hAT transposases. CC HAT1_CB contains 15bp-long TIRs terminated by CA-TG bases. CC Flanked by 8bp-long target duplications. XX SQ Sequence 887 BP; 379 A; 118 C; 164 G; 226 T; 0 other; cagacatgag cggaataaaa attttgaaaa tccggaataa ggaataagga ataaggaata 60 aaaatttaaa aatcaggaat aaggaataag aatagaaaaa acacccggaa taaggaataa 120 ggaataagga acgaaagaat ttccgaacga aggaagattt ctttttgtct tgaaaaacac 180 tgtttatttt aaaacacgaa caacgaagag agaactcaca aaccgagaca caaacaagaa 240 aaatggagag ggaactctca aactagaatt aaaaaactaa aaaacaaaat cataattgtg 300 aattatcagt tttccaggcc ataatttttc aaattgagtg aacaaaaagt taatttgtca 360 acagtgtcgt tattcaatcg gcttcttttc ggggtacaga tgaggcccga ttttctgacc 420 agattacact cgttttctgt tctgacgaag aattcgtcaa acttgctccg ttttttagac 480 attttttctg aagtatttag taattgtaaa aaccaaattt atttcgaaaa aaacactgag 540 aaaaacgcat aacttttcca agatttccaa aaaaaaattt ttcgaaaaac ggtgcaaagg 600 tgctccgctg aacaaaatgt tacgcggcaa tttagagcgt tcaaattttt ttcccagttt 660 tgagaatttt tttctgattt ttgatagaaa aagttttaaa gttttgaaga ggaataacaa 720 aaaaaaatca ggaagaagga agaaggaata aggaacaaaa ttaaaaaact cggaagagga 780 ataaggaata aggaatgaaa aatttaaaat ccgaaggaat aaggaataga aaaaacaccc 840 ggaataagga ataaggaata aggaataagg aattccgctc atgtctg 887 // ID GYPSY2-I_CB repbase; DNA; CBR; 6815 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 4bp TSDs; KW AP protease; CER; Cb000348; GYPSY2-I_CB; GYPSY2-LTR_CB; KW Gypsy clade; LTR; RNase-H; gag; integrase; reverse transcriptase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-6815 RA Pavlicek A. and Jurka J.; RT "GYPSY2_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 227-227 (2004). XX DR [1] (Consensus) XX CC Individual GYPSY2-I_CB copies are 97% identical to the consensus. CC GYPSY2-I_CB is similar to CER3-I_CE and CER2-I_CE from C. CC elegans. CC The LTRs are listed as GYPSY2-LTR_CB and flanked by 4bp target CC duplications. The consensus is taken from the a single elements CC with CC long ORFs found in the genome. CC GYPSY2-I_CB_ORF: 442-1993 (517 aa) gag-like CC MTEQIIFEVATAMNTVASVKQCVVSDLQSVHQKIQEIASLSIDRLEAVEDRVAENTDRINTLFANRADNS CC GTPSTHNSAQTSHPPSRRASPTPPNEILGSSINVLGLKIGSRIPIFSGAPAENFSTFVRSFMDHVKAVNP CC ALEESSVRAVFLTYLTEFARDKAEELLEKHPSYTCQQLVEEMRKTFEDPNRAEMERQQLRQCSQRTDESV CC DDFCTRVRKLALSAHAGNSRDFIQEKAKEAFIDGLLFNLKFLVKGESPTNFQEAQNSAMKFELLLKEAAR CC SNTIAPQGLAVIPAPAPAQNSPWSKPKRECFYCGIPGHFARECRRKIADQAKGIFQKTNKVSNLRSQTRS CC FPQRNPVDNHQIFSNNPGVQAIQPVVSTIHAQMEAMQTELEVRQNQINALIKRNDELTTNPGNHQVPNRR CC VSCLRWSQTYLLILITFMSLFTQVAAISPLVCMPHTPQSYLRLPAPLDCSRATGHEPHPVTQKELTIFRP CC NTIAYEANGTLCKIVKRITKYSVNFSE CC GYPSY2-I_CB_ORF: 2052-3102 (350 aa) pol? CC MKKFLHCSHGDLVPFNGIYKTLNDHILTWPSAPFSAFLGTQTAESTNCVMMPTRVMTRFGKETPESPAGS CC MVGCRFSSGFCNTREGAAFQWTPNPKQECKYLELRTMKGFMTKNIWVSTEKEFAISFDQNNTRLLDCGRK CC LVISDQGYGIALPNRNKRSNSVDELTNFVTSNQLAAQLLAVEEVVLETTAAWFAGNFMSWCSSFNAVAAA CC TRAAVASNPTLAARQMLKKENIFAKYIGNDVLSLQVCSPVPQDSYEFVPFTKTCYSKPALRVRLPKNTSI CC VTFVDLTTRVITNRAHPVDCSLVTSFQYVSNKTLYSLNPFTLELKTDTNFQTMTIPSRSWICYSRTSNLP CC GYPSY2-I_CB_ORF: 3366-6717 (1117 aa) pol-like CC MILVSNVLTPYLPFRQPAQPQFERPQSPDGQVCDYVTLTERLRSPRINALAHPTEYFSAVVPLKANGINC CC WALIDTGASFTVAGQGILHLLGIPRLQEPLSYMAVGLGNNEVKMAGSAVVKFQIGSHVLFQNTHFTTGQC CC TPGGPRDYDFIIGNDAHYMVTDVELPSEPAQRISESTTLQMIQDFRNETTKWMTIDTPITSVPNGKRNPN CC VATLSRFDCDRIFALYIVKESAGGNLHLNPAHRELVSYDRPDLYTVHLTRHSEDILNPGPPNPANYYIGD CC LLVVLSLKRRPGAKLNEIKRDFVDILDMNKCHFWQVNKFALVQRKVEKDQPLWKMDDLKEPIDPRRKLKM CC PWKAECIGYNQNQVVEAKIALFKELHPQDQKCTAADILVPVLEPASTLRSLLPGDARHAVITATNVQPPI CC VPLKPTVTAVRVLPGKFRKYISIAPNAFKGAESDPDYDLGGKALLWTARFGLAATLAIANKGRDTTTYST CC TITESETTGRRSTVTFTIRRPSTAAPVSSWTRSTAFKMDISPGGTCDLEVESATLINTQLTIRAKFTFES CC QSRINEKNLLNQNAVVWQQLDDNLHQLRTFPEPEDWLKVPVDSPSGNVLIALTGGPEIDGIMPWDKTDVV CC DFAGSAVKLSEEQSYYANTLAKTKIAGVIANAPPGVGKTLMVAGAAIHAIRETNDLRSIQTLTGMTNVSV CC LPMVKTLRTLDPETRYPPVRLISESHREHLDPALRTEIDYPILWIKVFKDLLHRIDPSTAVATIRENPDL CC MSAIQHLHAKKIDPEEFAHHFIRKAVAKGPNSDRNTTPKAELFRKLYNPRIVVGTVASVLESFKTPDWTW CC LRENVSAIQVDEASQLPLYALAALALMFQRARLALVGDIHQLPPFEDSDLPKDIAAFAISRVLQEAIKRR CC TLPIIDLTVGRRCPPQVTRMYNELFYNQRLTSLWSPEKEAELRAFTAALKFGNDFPIQILDLQSSHTQSG CC TSLTNIEEAKAAVRIARTIQTRVGTNDIGILCFYKAQAGEVAALLGDAPFYVGTIDGSQGHEFQAVIILT CC TRTSSFRDSEFIEDCRRINVAISRTKRICCIIVDRPKVTTNGTWSRLIRRIPHEAKSNFSVMTARWL. XX SQ Sequence 6815 BP; 1970 A; 1863 C; 1484 G; 1498 T; 0 other; aaatccatta gatgacacaa tccattagat gacacatatt ttttttccat tttcagcaaa 60 tacgatccac cggtcgcttt tggggatata acactggttt aggtaataag accccggttt 120 gagcggctgc ctgggttagt ttgtatcgcg tctcccctcg gacaacacgg atgcatctag 180 gttcacggtt ttcaggatga tatcatcagg ttcggtgtaa ggcaaatttt cagaatttcg 240 ggttcggcca aacccatctt caggagtttg cagatctttt ctaatcagtt atcgcaccgc 300 cagcagcccc aaaatagtca aggtaggaat ggtagacccg tttacttggg aggtaagcga 360 ctagcccaaa acacaggaga tggttagaga acgttcgcct cctctttggg tagtaagtaa 420 ggtccaggca gcaacaacag aatgaccgaa caaatcatct ttgaggtggc gaccgcgatg 480 aacacggtcg cctccgtcaa acaatgcgtg gtctcagacc tgcaatccgt ccaccagaaa 540 atccaagaga tcgcttcact ctcgattgac cgactcgaag ctgtcgagga cagggtagcc 600 gaaaacacgg atagaataaa cactctcttt gcaaatcgag cagacaattc gggcacgccg 660 tccacgcaca acagcgccca gacatctcac cctccaagtc gacgagcatc cccgactcca 720 ccaaacgaga tcctcggctc atcgatcaac gtcctaggct taaaaattgg atccaggatc 780 ccgatcttct ctggcgcacc agcggaaaac ttttccacct tcgtccgctc atttatggac 840 cacgtcaaag ccgtcaaccc agcactcgag gagtcatctg tcagagccgt gttcctgacc 900 tacctgacgg aattcgcaag agacaaagca gaagaactct tggaaaaaca tccgagctac 960 acatgccaac aattggtgga agagatgcga aagacgttcg aagatccgaa tcgcgccgag 1020 atggagagac agcagcttcg gcaatgcagt cagcgaaccg acgaatctgt agatgacttt 1080 tgcactcgtg tccgtaagtt ggccctcagt gcccacgcag gtaattcccg agactttata 1140 caagagaaag ctaaagaagc tttcattgac ggacttctat ttaatctgaa gttcctcgta 1200 aagggggaat cgcccacaaa ttttcaggaa gctcagaatt cggcaatgaa gttcgaactt 1260 ctactaaagg aagcagcaag gtcaaacacc atcgcacctc agggacttgc cgtcatcccg 1320 gctccagctc cagctcaaaa ctctccatgg tcgaaaccaa aaagggaatg cttctactgt 1380 ggcatacccg gacattttgc aagggagtgt cgcagaaaga ttgcagatca agccaaggga 1440 atcttccaga aaacgaataa ggtatccaac ctcaggtccc agaccagatc tttcccacaa 1500 agaaacccag tcgataatca tcaaatcttt tctaataatc caggagttca ggcaattcag 1560 ccagttgtgt caaccatcca cgcccagatg gaagcaatgc aaactgaact cgaagttcgt 1620 cagaaccaga tcaatgccct catcaaaaga aacgatgaac ttactaccaa tccaggaaat 1680 caccaagttc ccaatagaag agtaagttgc ctcagatggt ctcagaccta cttattgatc 1740 ctcatcactt ttatgtctct tttcacacaa gttgcagcaa tcagcccatt agtatgcatg 1800 ccacataccc cgcaaagtta tcttagatta ccagctccgc tggattgctc tagggccaca 1860 ggtcatgaac ctcatccagt aactcaaaaa gagctcacca tctttagacc caacacaata 1920 gcttatgaag ccaatggtac actatgcaaa attgttaagc gaatcactaa gtattcagta 1980 aatttttcgg agtaagaaca gaggaaagca caacaaatca gttaaccgtt tcatccgaag 2040 aatgtcagac aatgaagaaa ttcttgcatt gtagccacgg ggacttagtc ccattcaatg 2100 gaatctataa aactctcaac gatcatatac ttacttggcc ctcggctccg ttttcagctt 2160 ttctaggaac ccaaacagcc gaatcaacca actgcgtcat gatgccgaca cgggtgatga 2220 ctcgtttcgg aaaggaaaca cccgaatcgc cagctggatc aatggtcgga tgtcgctttt 2280 cttccggatt ctgcaacacc agagaaggcg cggcattcca atggacacca aatccaaaac 2340 aagaatgtaa gtatttggaa cttagaacta tgaaaggatt tatgactaaa aacatctggg 2400 tcagtacaga aaaagaattc gcaatctcat tcgaccaaaa caacactcga ttattagatt 2460 gtggacgaaa attagtgatc tcagatcaag gatacggtat cgcccttcca aacagaaaca 2520 aacgatctaa ctcagtagat gaactgacta actttgtaac ttctaatcag ttagctgccc 2580 aactgcttgc agttgaggaa gtcgttttag aaaccacggc cgcctggttt gccggcaact 2640 tcatgagttg gtgctcgtcg ttcaacgcag tagcggcagc cacccgagcc gctgtcgcca 2700 gcaaccctac attggcagcc cgtcagatgc taaagaaaga gaacatcttc gccaagtaca 2760 tcggaaacga cgtcctttca ctacaagtat gttcaccagt tccacaagat tcttacgaat 2820 ttgtaccatt cacgaaaaca tgctattcga aacctgctct tagagtcaga ctcccaaaaa 2880 atacatcaat tgtaactttt gtcgacctta ctaccagagt cattacaaac agagctcacc 2940 cagtagactg tagtctggtc accagctttc agtacgtatc aaacaaaact ctgtacagtc 3000 tgaacccatt cactttagaa ctaaaaaccg acacaaattt tcaaacgatg actatcccat 3060 caagatcttg gatctgttac tcaagaacat ctaatcttcc ataacctcgt gttaggatct 3120 ctttcagaaa atattcagga caatcactac aacgaaattt gggagctctt caaggatcgc 3180 cagcagccat caccaggatc atttcgtctc atggagaccc aagcagtgga cccttgtcac 3240 tcgacaccat cgaagaagcg gtaacgtttt ggacaaaagc taagtggcta tgggaattga 3300 tcttctatgt ttggactata ctcacaaata tcgtagtaac tctaatcgta ggaaccgcca 3360 tcatcatgat cttagtatct aatgtactca ccccttacct tccgttcagg caaccagctc 3420 aaccccagtt tgagcgtccc cagagcccag atgggcaggt atgcgactat gtaaccctca 3480 ccgaaagact tcgatctcca aggattaatg ctctcgccca ccccacggag tacttttcag 3540 ctgttgtacc tctcaaagcg aatgggataa actgttgggc tctcattgac accggtgcca 3600 gttttacagt agccgggcaa ggcattctcc acctgcttgg aattccaaga ctccaggaac 3660 ctctctctta catggcagta ggcttaggaa ataatgaggt aaaaatggct ggctctgccg 3720 tcgtcaaatt tcagattggt agtcacgtcc tgtttcagaa cacccacttt accacaggac 3780 agtgtacccc aggaggacca cgcgactacg atttcataat cggtaacgat gcccattaca 3840 tggttacgga cgtggaactg ccctcagagc cagctcagcg gatttccgag tcaacaaccc 3900 tgcagatgat tcaggatttc cggaacgaga caaccaagtg gatgaccatc gacacaccaa 3960 tcacttcggt cccgaacggc aaacgaaacc caaacgtggc aacactgtca cgattcgatt 4020 gcgataggat cttcgccctt tacattgtca aggaatccgc tggaggcaac ctgcacctca 4080 acccagctca cagagagctt gtgtcctacg atcgcccgga cctgtacaca gtccacctga 4140 cgagacactc cgaagacatc ctcaacccag gaccacccaa cccggccaat tattatattg 4200 gagacctctt ggtggtactt tcgctgaaga gaagaccagg agcgaagcta aacgaaatca 4260 agagggactt cgtcgacatc ctggacatga acaaatgtca cttctggcaa gtcaataagt 4320 ttgctcttgt gcagagaaag gtggaaaaag accagcctct gtggaagatg gatgacctca 4380 aggaacctat cgaccctcgg aggaaactca aaatgccatg gaaggccgag tgcatcggat 4440 acaaccagaa ccaagtggtc gaagcaaaga tcgcgctatt caaggaactc catccgcagg 4500 accagaagtg tacagccgct gacatcctgg tcccggtcct ggaacctgca tcaactcttc 4560 gatcattgct gcccggagat gctcgacatg ctgtcattac cgctaccaac gtccagccac 4620 caattgtgcc attgaaaccc acggtcacag ccgtccgagt cttgccggga aaattcagga 4680 agtacatctc aatcgcaccg aatgctttca aaggagcaga atcagaccca gattatgatc 4740 tcggaggaaa agccctcctt tggacagcca gattcggact ggcggcgacc ctggccatcg 4800 cgaacaaagg aagggacacg accacctact ccaccaccat cacggagtca gaaacaacag 4860 gaagacggtc gacggtaacg tttaccatcc gacgacccag taccgccgcc cccgtctctt 4920 cctggacccg ctcgacggcg ttcaaaatgg acatctctcc aggcggaact tgcgatctgg 4980 aagtcgaatc ggctaccttg atcaacaccc agctgacaat aagagccaag ttcacattcg 5040 agagccagtc aaggatcaac gagaagaatc tgctcaacca aaatgcagtc gtttggcaac 5100 agttggacga taatctccac caactccgaa ctttcccaga gccagaggac tggctgaagg 5160 tcccggtgga ttctccatca ggaaatgtct tgatcgctct cacaggagga ccggagattg 5220 acgggatcat gccctgggac aaaaccgatg tcgtggattt tgccggttca gcagtgaaac 5280 tatcagagga gcaatcctac tacgccaaca cgctggccaa gaccaagatc gcaggggtta 5340 tcgccaacgc acccccaggc gtcgggaaga ctctgatggt agcgggagct gccatccacg 5400 ccatacgcga aaccaatgat cttagatcta ttcagaccct cacaggcatg acaaacgtga 5460 gtgtgctacc aatggtgaag acgctcagga ccttggatcc ggaaacccgg taccctccag 5520 tccgattaat ctctgaatct catcgcgagc acttggaccc agcgttgcgg acagaaatcg 5580 actatccgat attgtggatc aaagtcttca aggatctgct acacaggatt gacccgtcaa 5640 cagcagtcgc gaccataaga gagaacccgg accttatgtc agcaatacaa caccttcatg 5700 ccaagaaaat cgaccccgag gagttcgctc accactttat ccggaaagct gtagccaaag 5760 gacccaactc tgacaggaac accaccccga aagccgaact tttccgcaag ctctacaacc 5820 ctcgtattgt agttggcact gtggccagcg tgctggaatc cttcaaaacc cccgattgga 5880 cctggctaag agaaaacgtc tcggcgatcc aagtcgacga ggcgtcgcag ctcccactct 5940 atgccctggc agcgttggca ctcatgttcc agagagctcg gttggctctc gtcggagata 6000 tccatcagct gccccccttt gaggactccg accttccaaa ggatattgcc gcatttgcaa 6060 tctccagagt tctccaagaa gcaatcaaga gaaggacact cccgatcatc gatcttacgg 6120 ttggccgccg ctgcccaccg caagtgacca ggatgtacaa cgagctgttc tacaatcaac 6180 gcctcacgtc cctatggtcg ccggaaaagg aagccgagct gagggcattc accgccgccc 6240 tcaaatttgg gaatgatttt ccaatacaga tcttagatct acaatcgtca cacacacagt 6300 caggcacttc gctcaccaac attgaagaag caaaagcagc tgttcgaatc gccagaacca 6360 tccaaacgcg tgtcggaacg aacgacatag gaatcttgtg tttttacaaa gcacaagcgg 6420 gagaagtcgc cgctcttctt ggagatgccc ccttttacgt tggcacaatc gacggatctc 6480 aaggccacga attccaggcc gtcatcattc tgaccacccg gacttcgtcc ttcagggatt 6540 ccgagttcat cgaggactgc cgccgtataa acgtggcaat ctcaaggacc aaacggatct 6600 gttgcatcat cgtcgacaga ccgaaggtca caaccaacgg aacgtggagt cgtctgatcc 6660 ggaggatccc gcacgaggcc aaatccaact tctccgtcat gaccgcccgt tggttataag 6720 gtcttagacc taatccaaaa tcgcaagtta aaattttttt ttcttttcct cttttccaca 6780 taggaccagg gacggtccta atttaaaggg ggagg 6815 // ID MARINER55_CB repbase; DNA; CBR; 1605 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000544; DNA; KW MARINER55_CB; mariner/Tc1 superfamily; transposase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 140-1605 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1605 RA Pavlicek A. and Jurka J.; RT "MARINER55_CB - a family of autonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 326-326 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER55_CB contains 165bp-long TIRs and is flanked by TA target CC site CC duplications. MARINER55_CB encodes 357 aa transposase similar to CC TCB2 CC and TCB1 elements. The consensus is derived from the only CC autonomous CC copy (apparently) presented in the genome. CC MARINER55_CB_ORF: 266-1337 (357 aa) CC MGRKHNNKTSTLVVQEAVVQGIQMGLKRNDLALQFNLAKSSITRIYKRYQVRESCLFIVKFLFQLRQGVV CC IRKSPGRPRKTNHLTDRNIVMTSRTNPRLSAGEISAIVDGPMTPVPHVRTVRRRLAQSGLNGRRPATKPF CC INAKNRKIRVDWTKAHVGWGRAEWKSVLWSDESKYNLFGSDGVKWIRRPVGTRYSPQYQTPTMKHGGGSI CC CVWGCFSAYGMEPLVRISGLMDRFQYESILENHMRPFARQSIGRSFTYQQDNDPKHTSLHVRNWFNRRHV CC NVLPWPSQSPDLNIIEPLWEELERRLKGKFASNADQKFVQLQDAWLQIPQSTIDALIDSMPRRCQAVIDN CC KGYPTKY. XX SQ Sequence 1605 BP; 451 A; 329 C; 344 G; 481 T; 0 other; cagtaccgga caaaaagaaa tcaactttta gtttttcgag agtatctcaa aaactatgag 60 agctaggact ctgaaatttt gtatgtatgt ttttgaaagg ctcggaaata ctccaaaaaa 120 aatatcaagt ccgcagacac catatcagac gcgcaattgc taaaaaaatc atattttcga 180 atttttcagt ttttcagagt tttcactttt tttgtttttt tttcaatttt tttcggtttg 240 tttgtaatga gttttgttcc tatagatggg tagaaaacat aacaacaaaa cgtctacttt 300 ggtggtccaa gaagcggtcg ttcagggcat ccagatgggt ctgaagcgca acgatctggc 360 tcttcaattc aaccttgcaa aatcatccat tactaggatt tataagagat atcaggttag 420 ggaatcatgt ttatttattg taaaattctt gtttcagctg cgacaaggcg ttgtcattcg 480 aaaatctccg ggaagaccac ggaaaaccaa tcatctcacc gatcggaata tagtgatgac 540 ctcgagaaca aatccaagat tgagcgctgg ggaaatttca gcgatcgtgg atggtccaat 600 gactcccgta cctcacgtca gaactgtcag acgtcgactg gctcaatctg gactgaatgg 660 aagaagacca gccacgaagc cattcatcaa tgccaaaaac agaaaaatcc gtgttgactg 720 gacaaaggct catgttggtt ggggacgcgc tgagtggaaa tccgtactct ggtctgacga 780 atccaagtac aatttattcg gaagtgatgg tgtcaagtgg atcagacgtc cggtaggcac 840 caggtactcg ccccagtacc aaacgccaac catgaaacat ggtggaggat cgatctgtgt 900 ttggggatgt ttttcggcgt acggtatgga acctctagtc cgcatttcgg gtctaatgga 960 tagattccaa tatgaatcga tcttggagaa tcatatgaga ccatttgctc gtcagtccat 1020 cggtcggtcg ttcacttatc agcaggacaa cgacccaaaa catacgtcct tgcatgttcg 1080 gaattggttc aatcggcgtc atgtgaacgt tctgccttgg ccaagccaaa gtcccgactt 1140 gaatattatc gaaccactct gggaggagct ggagagacgc ctcaaaggaa aatttgcctc 1200 caacgcggac cagaaattcg ttcaacttca agatgcttgg ttgcagatcc cacagtcgac 1260 aattgatgct ctgattgata gcatgcctcg acgctgccag gccgtgattg acaacaaagg 1320 atacccaacc aagtattaaa ctattttcat tttcttcccg ctttattttt aagtgatttt 1380 tgtttttttg taatgtttaa tgaaactgtt gcctgttaag cgaaattcca tttttctcaa 1440 tttttgcaat tgcgcgtctg atattgtgtc tgcggacttg atattttttt tggagtattt 1500 ctgagctttt caaaaacata cgtacaaaat ttcagagtcc tagctctcat agttttcgag 1560 ataccctcgt aaaactaaaa gttgattttt ttttgtccgg tactg 1605 // ID MuDR-13_CB repbase; DNA; CBR; 331 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 03-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000283; MuDR-13_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 41-331 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 266-292 (2003). XX RN [2] RP 1-331 RA Pavlicek A. and Jurka J.; RT "MuDR-13_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 87-87 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble genome CC annotation. Copies are 93% identical to the consensus. MuDR-13_CB CC contains 11 bp-long TIRs, flanked by 8 bp target duplications. CC Similar to MuDR-9_CB, MuDR-11_CB, and MuDR-12A_CB. XX SQ Sequence 331 BP; 88 A; 77 C; 71 G; 95 T; 0 other; catacttgca aaatcagggc ccggcccgcc gcgcgggttc cagggcccgg cccggcgggc 60 ccgggttctc caaatttgaa aaaatttttt gaaatttcag aaattttttc aaattttttt 120 tgtgaaagaa ctatttttta tggacactct tatcttgaaa attttttttc ttgtcagaaa 180 aatcgtccat tttttttctg ttgaccccaa aaaaaatttt ttgaaaagac agaaaaaatt 240 tgtttccgaa aatccgggcc gagacgggcc gggccgggcc ctgaaaattc tgaaaaaagc 300 ccggcccccg gcccggcccg ttgcaagtat g 331 // ID DNA8-7_CB repbase; DNA; CBR; 363 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000112; KW DNA; DNA8-7_CB; Interspersed repeat; palindrome. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 3-363 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-363 RA Pavlicek A. and Jurka J.; RT "DNA8-7_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC DNA8-7_CB is flanked by 8bp-long TIRs. XX SQ Sequence 363 BP; 107 A; 72 C; 72 G; 112 T; 0 other; ggtggtacga cggattggag atttcctaaa atgaaactgt agcaaaatga aacatttcct 60 aaatcaaaat ggttccaaat tgaaaactgt gcgaaatcag aactgtccgg aagtataaat 120 tggacggaac agaaatgcct aaagtgaaat tgtcccgttt tggacagctg ttagcgcgag 180 cgctctattg ctaacagctg tccaaaacgg gacagttcta ctttaggaca attccacttt 240 cgccttttct gctttcggac agttttcatt ccgtaaattt ttcaatttgg aagtatttcg 300 attcagaaac atttcatttt gctactattt cattttggga aatgtccgat ccgtcgtacc 360 acc 363 // ID DNA2-20_CB repbase; DNA; CBR; 141 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000204; KW DNA; DNA2-20_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-141 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-141 RA Pavlicek A. and Jurka J.; RT "DNA2-20_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~93% identical to the consensus. CC DNA2-20_CB contains 15bp-long TSDs and is flanked by 2bp direct CC repeats (often TA). XX SQ Sequence 141 BP; 53 A; 16 C; 17 G; 55 T; 0 other; tggggttatt catgacataa aaaatgtata tttttttgga atttttaaac acaaaaaatt 60 aatgcatgca tgcgaaaaaa tgtatttcat gtattttttc gtattttttt gtatttaaaa 120 aacaaatcat gcataacccc a 141 // ID DNA6-2_CB repbase; DNA; CBR; 246 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000194; KW DNA; DNA6-2_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 3-246 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-246 RA Pavlicek A. and Jurka J.; RT "DNA6-2_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(5), 212-212 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~94% identical to the consensus. DNA6-2_CB CC contains 40bp-long imperfect TIRs and is flanked by 6bp target CC duplications. XX SQ Sequence 246 BP; 66 A; 53 C; 52 G; 75 T; 0 other; cacggtgttt caaaccaacg ggtcgaaaat cgcgccccag ataactttta ggccagacga 60 aatttaataa tttcaaagtt gacgtggatt tgacctaaat atttttaatc aacgcattgc 120 aactcgcgat tttttcgctc aacgtttaaa agtttgatcc tcagccaacg aaatttgaca 180 cgttgcgcag tgatttttca cgttcgctgg ggcgcgtttt ccgaccaggt tgtttgaaat 240 agcgtg 246 // ID piggyBac5_CB repbase; DNA; CBR; 515 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000119; DNA; KW palindromes; piggyBac superfamily; piggyBac5_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-515 RA Pavlicek A. and Jurka J.; RT "piggyBac5_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >98% identical to the consensus. CC Contains 218bp-long TIRs, flanked by TTAA target duplications. CC Related to piggyBac3_CB and piggyBac4_CB. XX SQ Sequence 515 BP; 160 A; 89 C; 90 G; 176 T; 0 other; aggtggtgta cggtgaaatt ttttattgca tcaaaatgtg cagaaatgca tgtagattga 60 cataaaaata aagaaaaaat tcaaaaaaaa ttccttcatc gagaaaaacg catcgaaaaa 120 tacgctgaaa gcccttaggg acgaggtttt ttctaggccg cccggtgagt aaaagcgcgc 180 gaattcaaac ttttaaaatt ttttcgctcg ttttcacttt ttttttcggt tttttcaaga 240 gttttctagg tttttgtcaa tttttcttcc agatacatcg gaaaatttga aaaaaacagt 300 gaaaacgagc gaaaaaattt taaaagtttg aattcgcgcg cttttactca ccgggcggcc 360 tagaaaaaac ctcgtcccta agggctttca gcgtattttt cgatgcgttt ttctcgatga 420 aggaattttt tttgaatttt ttctttattt ttatgtcaat ctacatgcat ttctgcacat 480 tttgatgcaa taaaaaattt caccgtacac cacct 515 // ID LINE2A_CB repbase; DNA; CBR; 3887 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LINE retrotransposons - a DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR-1; KW Cb000170; LINE; LINE2A_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-3887 RA Pavlicek A. and Jurka J.; RT "LINE2A_CB - a young autonomous family of LINE RT retrotransposons."; RL Repbase Reports 4(4), 109-109 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >98% identical to the consensus. CC Distantly similar to LINE2A_CE and CR1-5_AG. LINE2A_CB contains a CC single CC open reading frames with endonuclease and RT domains. CC LINE2A_CB_ORF: 75-3774 (1233 aa) CC MVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKEAVDDIIESVDDMSNPLYDLLSNDFKSKEEFTV CC NDIAMMFKSLAETILKLQSQNTMLKNQNCILNANLSNLTEKVDGLEENLKLLSSQPKESPKPPTTLIKTF CC ASAVASTISAPESQITFMRAASLANSEDARKSNVIIKNIDLSEEAIEKAEIRLQNCQGLRYFDAIGFSHT CC SSGQRAAHCAPGIQVQGGSKNCPHQIQLNQSFNTGVLECVSPPRPLQTRTREISTILENGDPKEQRGRSN CC HLYGSQSGSRQSCLQRKSGAVAMGQKTLDPRKFLKIGYTNSCSIKNKVLQLDLWSSNSNIDILCLVETKI CC DSNYPDSLLSLDEKYAVIRKDRNRHGGGLAILIKKPINYTVVSLPTHLESVEILSVDIKIHGKTTRLIVS CC YNPNHNYCFKDLRESLNILLSTENPSIITGDFNCAHVDWNSYTASDSQCQSLLDFSLYNGLTQFVQNPTR CC LEQPNILDLVFTNSMDIIRDVIVGEKFSDHCRIEIDTFILLNSISPLKSTKNFKKGDFRSMNYILSNIDW CC DLRFSTMSIDEMFDDLRGIILELIESFVPTETHRIHNIIYSKETKQLLKKKLLIWKKAGNSDEYKHVSAL CC FKRSLVKSEEERIYKRLNSGSKNFFGFMKSKFKGNSDIPAIRYKSNENVIMSDEGKAEIFGDCFSEFFNI CC DKDILPATGNLISKFSSDVIFTPENIELLLYKLKGRNNTSPDSIPSIFLKRACTPLAIPLCIIFTESYRV CC GRIPKSWKEAIVMPLHKKGSRSDPLNYRPISLTSNICKIMEKLIRKHLVQYLSENNLLSEKQFGFLNQRS CC TISQLIAYQNKLVFNSLNGLDTHSVYIDFQRAFDTVPINKLIHKLESFGISPKLRNWLHSFVTDRKFQVK CC INDILSKERRVLSGVPQGSVLGPTLFLLYINCIGDKFQSDYLLFADDLKIYDTNDRLIDADLIELENWCS CC KWKMKAAPKKCEYIKFNATRKYANSNVMNPKLNQALIPPVENVRDLGIYFSSNLSFHYHYSLIIRKSHQR CC INMFFSILKNASWSVFIKCYTIYIRPLLEYGTIVTSPILKDHIIKLESVQKSFVFRIFKKFRMAYTSYFE CC ALEECQLSSLEYRRLYNDLVYTYKIIVSKEIIMEVPIFEIFNHAGSLRRHKYYLKSLIKNSTKISSQFLS CC NRVIRCWNSLAKVCPVKPSSAAFKNRLLSCDLKHFLVLNSTNY. XX SQ Sequence 3887 BP; 1282 A; 770 C; 672 G; 1163 T; 0 other; aaacattccc tcccgcgtct ctgtagcgtg cggtgacccc ttctattcct ctgatatcga 60 tttttttggc cgctatggtt gtaactatta ttaaacataa acctcgaaat aagagaaaag 120 ctctctcggc cttgaaagat gaaaatggcg gtaagaaatc caaattgtct gaatattcca 180 gtaaggaagc tgtggatgat ataattgaat ctgtggatga tatgtctaac ccattatatg 240 atctgctgtc aaatgatttc aaatcgaaag aagaattcac tgtgaatgat attgcaatga 300 tgtttaagtc gctggctgaa acgattctca agcttcaatc tcaaaacaca atgttgaaaa 360 accaaaactg tattctaaat gccaatttgt cgaatcttac ggaaaaagtt gatggcttgg 420 aggagaatct caaattgtta tcatctcaac ctaaagaatc accaaaacct cctactacat 480 taattaaaac ttttgcttca gctgtcgcct caaccatctc tgctccagaa tcccaaatca 540 ctttcatgcg agctgcctca ttggctaact ctgaagatgc acggaaatcg aatgtgatca 600 tcaaaaatat cgacctttcg gaagaagcta ttgagaaagc tgaaattcgc ctccaaaatt 660 gccaaggact gcggtacttc gacgccatcg gtttttcgca tacctcatcc ggccaaaggg 720 ccgcccattg tgcgcctggc attcaagtcc aaggaggaag caagaactgt cctcaccaaa 780 ttcaactcaa tcaaagcttc aatacagggg tgcttgaatg cgtctccccg cccagacctc 840 tccaaaccag aactcgagaa atatcgacaa tcctggaaaa cggtgatcca aaagaacaac 900 gaggcaggtc aaaccattta tacggttcgc aatctggaag tcgtcaaagt tgtctacaga 960 gaaaatcagg agccgtggcc atgggccaaa aaacactcga tcccagaaaa tttctaaaaa 1020 ttggttacac caatagctgc tcaattaaga acaaagtcct ccaactcgat ctatggtctt 1080 ctaattccaa catcgatatt ctctgtttag tggaaactaa aattgattca aactatcctg 1140 actccctgct atctcttgat gaaaaatatg ctgtaatccg gaaagatcga aacagacatg 1200 gcggaggtct agccatacta atcaagaagc ctatcaatta tacggtagta tcacttccga 1260 cacatcttga atccgttgaa attctatctg tggatatcaa aatacatggc aaaactacaa 1320 gattaattgt aagctacaat cctaatcaca actactgttt taaggacctt cgagaatcac 1380 ttaacatact cttgtcaact gaaaatccat ctattatcac tggagatttc aattgtgccc 1440 atgttgattg gaattcatat acagcatctg attctcaatg ccagtcactg ttggactttt 1500 cgctttataa tggcctgacg caatttgtac aaaatccaac aagactcgaa caaccaaata 1560 tattggatct ggtgttcact aattccatgg acattattcg tgatgtcatt gttggtgaga 1620 aattcagtga ccattgcagg attgagattg atacctttat attgcttaat tctatttcac 1680 ccctcaaatc aacgaaaaat ttcaaaaaag gagattttag atcgatgaat tatattctat 1740 caaatatcga ctgggattta cgattttcaa caatgtcaat tgatgaaatg tttgatgatt 1800 tgagaggaat tattctggag cttattgaat cttttgtacc aacagaaact catcgaattc 1860 ataatataat ttattccaaa gaaaccaaac aattactaaa gaagaaatta ttgatttgga 1920 agaaagcagg taactcggac gagtataaac atgtttcagc actattcaaa aggtcactcg 1980 taaaatctga agaagaaaga atctataaac gtctgaattc tggatcaaaa aattttttcg 2040 gatttatgaa atcgaaattt aaaggaaaca gtgatatacc ggcaattcga tataaatcta 2100 atgagaatgt tatcatgagt gatgaaggaa aagccgaaat atttggagat tgcttcagtg 2160 aatttttcaa cattgacaaa gatatccttc ctgctacagg gaatctaatt tctaagttca 2220 gctcagatgt catattcacg ccggagaata tcgagttatt actatataaa ctgaaaggcc 2280 gaaataatac ttctccggat agtatcccgt caatattttt gaaaagagcg tgtactcctc 2340 ttgcgattcc actatgcatt atattcacag aaagttatcg agttggaaga ataccaaaat 2400 cttggaagga ggcgattgtt atgccgcttc ataagaaagg ctcccgctcc gatcctttaa 2460 attatagacc aatctcttta acatccaata tatgcaagat tatggagaag ttgatacgaa 2520 aacatctagt ccaatactta tccgaaaata atctattatc agaaaaacaa ttcgggttcc 2580 ttaatcagag aagtacaatt tcccaactga tcgcctacca gaacaagctt gttttcaatt 2640 ctttaaatgg gttagatacc catagcgtct atattgattt ccagagggcc ttcgatacag 2700 tgccgataaa caaattgatt cataagttgg aaagctttgg gatatctccc aaactaagaa 2760 attggcttca ttcatttgtc acggacagaa aatttcaagt caaaatcaat gatatactat 2820 cgaaggagag gcgcgtattg tccggagtcc cgcagggatc tgttcttggg cctaccctct 2880 tcttgttata tattaattgt attggggaca aatttcaaag tgactatcta ctgtttgcag 2940 atgacttgaa aatttatgat acgaatgata gattgattga tgcagattta attgaattgg 3000 agaattggtg ctcgaagtgg aaaatgaaag cggctcctaa aaagtgcgaa tacatcaaat 3060 tcaatgcaac aagaaaatat gccaactcca atgttatgaa tcccaaatta aatcaagctt 3120 tgattccccc tgtggaaaat gtccgtgatc ttgggatcta cttttccagt aacctgagtt 3180 tccattatca ttattcgttg attattcgga aatcacatca gaggatcaac atgttctttt 3240 ccattctaaa aaacgcatcg tggagtgttt ttataaaatg ctatacaatt tacatacgcc 3300 ctttactcga atatggaacg atagtcactt ctccaatcct aaaggatcat attataaaat 3360 tggaatcggt gcaaaagtca tttgttttca gaattttcaa aaaattcagg atggcataca 3420 cttcatactt tgaagcactg gaagaatgtc agctaagttc cttggagtat cgcaggctct 3480 ataatgattt ggtctacacg tataaaatta ttgtttccaa agaaattatc atggaggttc 3540 caattttcga aatatttaat catgctggat cattgcgacg tcacaaatac tatctcaaat 3600 cacttatcaa aaactcaaca aaaatatctt ctcaatttct ctctaataga gtaatcagat 3660 gttggaactc tttagccaaa gtgtgtccgg taaagccctc gtcagcggct ttcaaaaatc 3720 gactattatc ctgtgatcta aaacattttc ttgtcttgaa ttcaactaat tactaactcg 3780 gtttatcctt catctcccaa ttactacaaa tgtatgtccc tgttatatct cctagtttca 3840 tagacatttc acgtgttagt ggttttctcc ccttcgttga aataaat 3887 // ID HAT2_CB repbase; DNA; CBR; 810 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000120; DNA; HAT2_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-810 RA Pavlicek A. and Jurka J.; RT "HAT2_CB - a family of nonautonomous hAT-like transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC Distantly similar to HAT-like nonautonomous MINISAT1_CE. CC HAT2_CB is flanked by 8bp-long target duplications and contains CC 20bp-long TIRs terminated by CA-TG bases. XX SQ Sequence 810 BP; 263 A; 148 C; 156 G; 243 T; 0 other; caggcctgtg cggcaacaaa ttgccgattg ccgaaattgc cgaaattgcc gaatttttgt 60 tgccgatttg ccgttgccga aatcggcaac gaagaaaaag ttgccgaatt gccgttgccg 120 atttcggcaa aaaaatttcg gcaatttcgg caactgaaat tttttttgaa tttagagatt 180 ttcacaattt ttttagtcaa aaaaatgatt tcgaagttcg aaaaatcaaa ttttgaacac 240 catcatccct cagagtgaat tttagaggaa atgtgtccca ataatcatca aaaatacttg 300 catcggatct aaaaatgggc ttcaaatttg tgagcatagg agaaaaatag atatcatgag 360 tcacaactca tcaaaaaaat tatccaatct gtctcaaatc tctagggaac gtgtgtcgtg 420 agttgcctaa caagttgagc gcactatttt caaaactcac aatcggaaca aatattttca 480 accattggaa taccctctat tgctaaagag aaatagtttg cataaaaaat gtggtcttga 540 gttgccaatt tttgtaatta cttttttaag gaacttatga aacacatttt ctgtagttct 600 gagcctgata gaagcatttt caggtgagtt acgtatcgat tttactaaaa aaaagacgca 660 aaacttttgt tgccgaaaat tgccgaaagt tgccgaaatt gccgaaattt tttttcggca 720 attgccgagt tgccgaacgt tgccgaaaag tattcggcaa attgccgagt tgccgaattg 780 ccgaaaaaat tttgttgccg cacaggcctg 810 // ID HAT5_CB repbase; DNA; CBR; 504 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000143; DNA; HAT5_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-504 RA Pavlicek A. and Jurka J.; RT "HAT5_CB - a family of nonautonomous hAT-like transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC HAT5_CB contains 15bp-long TIRs, flanked by 8bp-long target CC duplications. Distantly similar to HAT4_CB. XX SQ Sequence 504 BP; 140 A; 95 C; 87 G; 182 T; 0 other; cagtgatggg aggaatttcc gtttccgttt ccgttttccg ttttccgccc ggtttttaga 60 gatttttttc cgtttccgtt tccgcggaaa aaaaatttac gttcgtttcc tattccgttt 120 ccgtaaaagt gaaattttat ttctatttcc gtttccgttt tccggaaaaa ccgccatttt 180 ttttacagcg gaaacggaaa aaaaatgtaa aaaacaacga aaacattaaa ctgaaactgg 240 cttgaaaaaa agcatggaaa gtgatgcaaa tatggtcttt aaacgttaaa aagtgtatat 300 ttttatgttt gaagggaaaa aaaatcctga aaaatagacg aaaaatagaa atttccgttt 360 ccgtttccgt tttagttttc cgttttccgc cccgattttt gaagattttt tttccgtttc 420 cgttttccgc ggaaaaaaaa tttacgtttc cgtttccgtt tccgttttcc gtatttcgga 480 aaaatgcgtt tcctcccatc actg 504 // ID MINISAT5_CB repbase; DNA; CBR; 54 BP. XX AC . XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 15-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeats. XX KW MSAT; Satellite; Simple Repeat; Cb000469; MINISAT5_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-54 RA Pavlicek A. and Jurka J.; RT "MINISAT5_CB - minisatellite repeat."; RL Direct Submission to Repbase Update (AUG-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT5_CB contains repetition of a 54bp CC motif. XX SQ Sequence 54 BP; 11 A; 16 C; 15 G; 12 T; 0 other; tcttctccag atgcttcggt gacagcagct tcagcagcag cagcagtggt agcc 54 // ID DNA2-1_CB repbase; DNA; CBR; 620 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.02, Created) DT 07-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000008; KW DNA2-1_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 24-609 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-620 RA Pavlicek A. and Jurka J.; RT "DNA2-1_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (07-MAR-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 90% identical to the consensus. DNA2-1_CB CC is flanked by 2bp-long target site duplications. XX SQ Sequence 620 BP; 204 A; 102 C; 102 G; 212 T; 0 other; aagggaacct caacacctca caaacccaga ttttgatgaa aatttcagga taggttgaaa 60 atagcctatc tagacatctc tgaaaatttt agaatccgcc cgccagtttc agccgagtta 120 tatcagtttc agtaccaaaa atcgcctttt cagtgcaaaa gcaccgtttt caaagacgat 180 tttctcaact tctaggacgt ttcagagcat gaaatttgtt gtgttatact caaaatttaa 240 tgaaatttga tatttcaaac attttctcaa gaacaaaaat attttttatt tttgaatttt 300 ttcacgattt tccagatttc ttcgaaaatt gaaaaaaaaa tttttttttg agaaaaagtt 360 tgaaatatca aatttcatta aattttaagt ataacacaac aaatttcatg ttctgaaacg 420 tcctagaagt tgagaaaatc gtctttgaaa atcgctgctt ttgcactgaa aaggcgattt 480 ttggtactga aactgatata actcggctga aactggcggg cggattctaa aattttcaga 540 gatgtctaga taggcgattt ttaacctatc ctgaaatttt catcaaaatc tgggtttgtg 600 aggtgttgag gttcccttgt 620 // ID MARINER40_CB repbase; DNA; CBR; 1557 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000461; DNA; KW MARINER40_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1557 RA Pavlicek A. and Jurka J.; RT "MARINER40_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(8), 211-211 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 94% identical to the consensus. CC MARINER40_CB has a palindromic structure (~715bp-long TIRs) and CC is flanked by TA target duplications. Related to MARINER7_CB, CC MARINER41_CB, and MARINER42_CB. XX SQ Sequence 1557 BP; 558 A; 232 C; 230 G; 532 T; 5 other; cactgcggga cataattata ggtccacttg aagtttcgtt atatttccaa aatctcgaga 60 gacctgataa acgttcctga tactagtatt tgagggattc atttttcatg ttactgtacg 120 tatcctttcc tgtctgtcgt ttttgattca agaaaaaatt ttgattttgt caaaaaatga 180 aaagtgcaaa aggacataat tataggtcca ctcttgaaaa aaaatgtttc tggctgaatt 240 catgggataa aaagttaaaa aatgagttct acgcaaaaaa ctaatttaaa ttcatgaaac 300 tttttaaaaa aagtactaga aaaattgttc ggaaaaaagg ttttttggtg ttttttgacc 360 aattttccta ttcttcaaat tttcgagtct aaattttgga ggaagcttcc accaccttat 420 aaattgatat aataatgttt taaacattgg tttacaccaa ttcctaacaa ttttattgta 480 agtttcttcg ttcatatcat accaaaaaca gcgtttctcc tcgtaaatcg gcacttatgt 540 tcgtgatctt tgacaaactt tatctcggtt cgcaaaagag caatgaaaaa gtattcaact 600 acaaaaatgt gtagcataat ttcaataaca ttgtaccaat tgactttatt tttctatctc 660 tttcaggaat tgtgataact gtagtcgaaa agagcgtaaa tgacagctag gttaacgnaa 720 gatttagnaa aaaagtttcc aaaaataaga ntttttatcg ttttttataa cataatttna 780 aaattttnaa attatgtaaa aaaaaacgat aaaaataata attggaaact ttaaatcttc 840 tgttaaccta gctgtcattt acgctttttt cgactacagt tatcacaatt cctgaaagag 900 atagaaaaat aaagtcaatt ggtacaatgt tattgaaatt atgctacaca tttttgtagt 960 tgaatacttt ttcattgctc tattgcgaac cgagataaag tttgtcaaag atcacgaaca 1020 taagtgccga attacgagga gaaacgctgt ttttggtatg atatcaacga agaaacttac 1080 aaaaaaatag ttaggaattg gtgtaaacca atgtttaaaa cattattata tcaatttata 1140 aggtggtgga agcttcctcc aaaatttaga ctcgaaaatt tgaacaatag gaaaattggt 1200 caaaaaacac caaaaaacct tttttcccaa caaattttct agtacttttt ttaaaaagtt 1260 tcatgaattt aaattagttt tttgcgtaga actcattttt taacttttta tcccatgaat 1320 tcagccagaa acatgttttt tcaagagtgg acctataatt atgtcctttt gcacttttca 1380 ttttttgaca aaatcaaaat tttttcttga atcaaaaacg acagacagga aaggatacgt 1440 acagtaacat gaaaaatgaa tccctcaaat actagtatca ggaacgttta tcaggtctct 1500 cgagattttg gaaaaataac gaaacttcaa gtggacctat aattatgtcc cgcagtg 1557 // ID MERLIN3_CB repbase; DNA; CBR; 1266 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Cb000175; DNA; KW MERLIN3_CB; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1266 RA Pavlicek A. and Jurka J.; RT "MERLIN3_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(4), 117-117 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MERLIN3_CB contains ~65bp-long imperfect TIRs CC and is flanked by 8bp-long target duplications. Distantly similar CC to CC MERLIN2_CB and Merlin1_CB. XX SQ Sequence 1266 BP; 416 A; 225 C; 193 G; 432 T; 0 other; ggctctagtt ggttattttg gattttaaag aaatttttgg attttaataa aaattttgga 60 ttttagaaaa gacgaaaaaa attttggatt ttagacaaag aaatttttgg atttaatcag 120 gaaaattttg gattttaaag aattcagaaa agattcataa taatacctcc tgcttttcaa 180 ctactcgatt tttggcataa aagcgccttc gtacgttggc gaccgtcaga cgttggcccg 240 tcaaagattg attgttattt gtttgcttga gaataaattt gatttgggtg ctaagtaagg 300 tatagttttt ttagcttcca actcttttga atttggtgtc attttcgaat tcctcagtac 360 agagataacg aagcttttca gtctaagcct ataatttcaa acatcagaca aagtactctg 420 aaaaattcca gttaatgaag tactgaaatt caaatcaatg aaaatctctt tttttcacta 480 aatttttttt caaattttct gttttttcgt tcaatttaaa ggcttaggct gaaatgtgct 540 gttttccttc cactggaaca ctggcatttg acatcaactt taaaacattt ggctgtatat 600 gccatatttt caacggccca gtatccaagg gtacatcggg aaagagtaca tctagttctt 660 agagtacatt gattcctagc atacatggga ttttgtggta catgcgggag ggcgaaaaaa 720 aattttccta ctgactattt agcttttgct ctaaatcata ggctcaagct aaaacgacct 780 acacccaaga tcccatttac cctctgaacc tatgtaccct aagaactcag agtaccctca 840 acgtagcctt ttttaatgta cccttcgatc ctgggttccc gacaagatga gggcaataaa 900 tattaacctt cggaaccctc tcaagcttgt ctctagtctc gaaatttttc cactatcttc 960 aaaatccaaa ataattcgaa aactatgaaa atgtctgaaa acgacgacaa atcagttgtt 1020 caaatgctga ttacagcgaa gtacagccag gaggaacact ggccacaatt tatgatgaaa 1080 atttcatcgc acgaaatttt tggattttaa tgtttttcaa gatctttaaa atccaaaatt 1140 ttcttaaaaa tccaaaattt tctttaaaat ccaaaatttt tttcaaaatc caaaaatttt 1200 tttaaaatcc aaaatttttt taaaatccaa aattttcttt aaaatccaaa ataaccaact 1260 agagcc 1266 // ID MARINER57_CB repbase; DNA; CBR; 762 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000014; DNA; KW MARINER57_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 163-735 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-762 RA Pavlicek A. and Jurka J.; RT "MARINER57_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 328-328 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 93% identical to the consensus. CC MARINER57_CB contains ~168bp-long TIRs and is flanked by TA CC target duplications. CC Similar to MARINER4_CB, MARINER2_CE, and MARINER6_CB. XX SQ Sequence 762 BP; 243 A; 158 C; 158 G; 203 T; 0 other; ttaggttggc aactaagtct ttgtgcactt ttgttttcct cgtttctctt aactgagcta 60 gaacagtaac atgtgtgtaa caggatatgg tatataagat gataaggttg ttcacaataa 120 ccatcatttg ccctgctctc attcgcttgc gaacgggacc ccttttgttg gcaagttcaa 180 gaaccaggac ttttcaatga aagatgaaac ttgtcccggg caaccagttc ttcaagattc 240 agacaagctg agagatctag tagaacggga ccctttccaa tctacccgtg aaatgtcaat 300 cactttaggg acaacccata ccactattga aaatggattg ttaaagttgg gaaagacaga 360 aaaacttgga cggcggatac ctcaccgttt tgaccagttt tgatgttcag cggcgagtgc 420 atgagcatgc aacttcttac tctactcggg aacagcggct gaattatatt atcaccttag 480 ataagaagag ggtcatatat actaaccatc acagaaaagc ccaatgtctt gacttcgata 540 aacagccagt agacgtcatc aaacaggaat ttcacccaaa aacagtgggt atcaaaaggg 600 gcatcccgtt cgcaagcgga atgagagcag ggcaaatgat ggttattgtg aacaacctta 660 tcatcttata taccatatcc ggttacacac atattattgt tctagcttag ttaagagaaa 720 agaggaaaac aaaagtgcac aaagacttag ttgccaacct aa 762 // ID DNA2-23_CB repbase; DNA; CBR; 255 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000224; KW DNA; DNA2-23_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 2-255 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-255 RA Pavlicek A. and Jurka J.; RT "DNA2-23_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 98% identical to the consensus. DNA2-23_CB CC contains 31bp-long imperfect TIRs and is flanked by 2bp target CC duplications. XX SQ Sequence 255 BP; 75 A; 48 C; 64 G; 68 T; 0 other; ctctggtaat cggtttccaa ccagattcgg gaaaattccg gagcagaaat ggctagatct 60 ggttagaaaa ttgtccgaat caggttggga aattagcttt ctcggtcgga tctggtcaga 120 aaatcaccag atctggtcgg aaaataaaaa ctttccgaat ctggttggaa ttttactcga 180 atctggttgg aaaatgcgcg ttcccgaatc tggttggaaa attgcccgaa actggttaga 240 aaccgattac cagag 255 // ID MuDR-8_CB repbase; DNA; CBR; 1035 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 03-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000566; MuDR-8_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 20-404 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1035 RA Pavlicek A. and Jurka J.; RT "MuDR-8_CB - a family of nonautonomous MuDR-like transposons."; RL Repbase Reports 5(4), 90-90 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 95% identical to the consensus. MUDR8_CB CC contain ~400 bp TIRs and is flanked by 9 bp target duplications. CC Distantly similar to MuDR-12B_CB, MUDR5A_CB and MUDR5B_CB. XX SQ Sequence 1035 BP; 334 A; 189 C; 189 G; 323 T; 0 other; ggcaaataat catttgctgc cagatcattt gctaccggat catttgctac cggtgatcaa 60 ttgctaccag ttatcatttg ctaccaaatg atcatttgct accggtggta tgtcgctact 120 agattaactg ctatcaaaca agaagcctga tgttgaacat aaactggcaa atggtcaata 180 ggatgggatc tgacaagttg atagttagga acaattgcta tatgtctagt tgatatgaca 240 cagtttctat attttctcca gatttcaaag acacaactga tatgaaaggt acaagttgct 300 gtgtgtgaat actggggctt ttatgacaca atccatgtct tacagcaata catgtcttaa 360 agttgtgcca caatactgta aattttatcg gttctcatgt ttcaaacaac ttcgggggta 420 caaattcaga ggttcaaaac tcgtgattcg ggggtacaat ttttggagtt tctgaattcc 480 tgaatttcaa agttttaaaa tcttaaaaat tttaacattt taaaactttg aaattcagga 540 atttagaaat tctatcaaga aaaactgaac ttcagaatca cgagtgttgt acccctaaat 600 aaaatgaatt gtaccccccg aaattttcgc ctgaaacaag ggagccgata aaatttacag 660 tattgaggca caactttaag acatgtatta ctgtaagaca tggattgtgt cataaaagcc 720 ccagtattca cacacagcaa cttgtacctt tcatatcagt tgtgtctttg aaatctggag 780 aaaatataga aactgtgtca tatcaactag acatatagca attgttccta actatcaact 840 tgtcagatcc catcctattg accatttgcc agtttatgtt caacatcagg cttcttgttt 900 gatagcagtt aatctagtag cgacatacca ccggtagcaa atgatcattt ggtagcaaat 960 gataactggt agcaattgat cactggtagc aaatgatccg gtagcaaatg atctggcagc 1020 aaatgattat ttgcc 1035 // ID tRNAThr_CB repbase; DNA; CBR; 84 BP. XX AC . XX DT 12-JAN-2005 (Rel. 14.08, Created) DT 02-SEP-2009 (Rel. 14.08, Last updated, Version 1) XX DE tRNA from Caenorhabditis briggsae. XX KW tRNA; Pseudogene; TRNAThr_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-84 RA Smit A.F.; RT "tRNAThr_CB - tRNA from Caenorhabditis briggsae."; RL Direct Submission to Repbase Update (02-SEP-2009). XX DR [1] (Consensus) XX SQ Sequence 84 BP; 18 A; 20 C; 23 G; 23 T; 0 other; gcctcattgg ctcagtggca gagcgtctgt ctagtaaaca gaaggtcgct ggttcgattc 60 cagcatgagg caccgaactt tttt 84 // ID HAT12_CB repbase; DNA; CBR; 215 BP. XX AC . XX DT 30-JUN-2005 (Rel. 10.06, Created) DT 30-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE HAT12_CB - a family of nonautonomous hAT-like transposons. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000400; HAT12_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-193 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), E45-E45 (2003). XX RN [2] RP 1-215 RA Pavlicek A. and Jurka J.; RT "HAT12_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 5(6), 142-142 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 87% identical to the consensus. HAT12_CB CC contains 14bp-long TIRs and is flanked by 8bp target CC duplications. Distantly similar to HAT11_CB and HAT1_CB. The CC internal part is similar to MARINER38C_CB. XX SQ Sequence 215 BP; 77 A; 42 C; 50 G; 46 T; 0 other; cagagatgtc cggaatgaat tttttgagaa acggaattcg gaatccggaa taaaataatt 60 ttctcggaat ccggaatccg gaatccggac aaatgaaaat tttacggaat ccggaatacg 120 gaatccggac aaaaatattt ttcacggaat ccggaatccg gaatccggaa tgaaaaaaag 180 cacggaatcc ggaatccgga atccggacat ctctg 215 // ID MARINER11_CB repbase; DNA; CBR; 276 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000073; DNA; KW MARINER11_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-276 RA Pavlicek A. and Jurka J.; RT "MARINER11_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 80-90% identical to the consensus. CC MARINER11_CB contains 25bp-long TIRs and is flanked by TA CC target duplications. Distantly similar to NTC2A (Tc2). XX SQ Sequence 276 BP; 94 A; 46 C; 64 G; 72 T; 0 other; ccgtatttcc tctaatagag gcccatgggc ttctattttt caacctcctt ctgggggtgg 60 actaatatta gagaaaacgc tcaaattaga gggttttcgg tttttaactg aactggaata 120 gttataaaac gacaagaatt aacggaaatt accagaaaaa taaacaaaaa agagtatgtc 180 tgcactaacc gaaaagaaaa actgcacagc cagggtgggc ttctattaga ggtgggcttt 240 caaataggag gtgggcttct attagaggaa atacgg 276 // ID MARINER50_CB repbase; DNA; CBR; 1057 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000004; Cb000268; DNA; MARINER50_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1057 RA Pavlicek A. and Jurka J.; RT "MARINER50_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 299-299 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC MARINER50_CB contains 36bp-long TIRs and is flanked by 3bp target CC duplications TNA. C|TNA|G insertion motif. XX SQ Sequence 1057 BP; 325 A; 193 C; 189 G; 350 T; 0 other; caagggaagt gttttcagac agtggttgag aatttgttca aactttggtc attggtactt 60 ttggacacgc tgatcacagc gctgctttta ttttttgccc cttgcccctc acaaaaaagt 120 tatgggctct gaaagtgatt tcagtgctaa tttctcactt ttggagtgaa tttttggagg 180 ggttaataac agttgttcgg agtttctcga atgtaaatcg tacttttgaa ggtttctcta 240 caatctgaga aagtagcctc atttttcaaa aaaaaatttt tttgaaagtc gccatggggt 300 accccctttg gaaattttta caattttttg aaaaattttc aaatgtgcta aaatgatttc 360 taaacgtaaa gaaccgataa aatgagtctt ttcatgaaat ttggtattct aaatatttct 420 ggaaatcaca aatatgtgct ttctttcaaa actttaatgg atcgtaggcc tgcggtaatc 480 acccagtagc actcaaatct tgtaaaaaca taggtttaca taatttctga ctaatttatt 540 actgttccgc atccaaactg agcaaatctg ggtggttctg actaacaatt tgattaaaga 600 tggttttcca gcagttcttc aagaaaattt caaaatgatt tcttgggttt tttttgaaac 660 aagtcaaaaa tttttttttc aaaattaata aaaatctgaa tggaaatttt ttctaaaggt 720 tttgacacac tttgagattt ccagcaagat cagaaaaaaa gcagaaaaca aatcggggaa 780 agagggatcg aactaaccct tgtcagttac caccatccct cttcaccact acaccacact 840 cgctgttcct cactgcttcc acaatttgta taagaaaggg ggagatcgcg ctcacgcttt 900 taatgcttta acagaggtga aatttcagac gcgttttttc agcttctagg taccgagggg 960 cacgaaaaaa agtcgtctcg ttattgacca tgtccgaaag tatatgtgta ccaattttca 1020 agaaattctc aaccactgtc tgaaaacact tcccttg 1057 // ID Polinton-1_CB repbase; DNA; CBR; 16633 BP. XX AC . XX DT 15-MAR-2006 (Rel. 11.02, Created) DT 15-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE A family of autonomous Polinton DNA transposons - a consensus DE sequence. XX KW Polinton; DNA transposon; Transposable Element; KW Interspersed repeat; Maverick; Tlr; Polinton-1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-16633 RA Kapitonov V.V. and Jurka J.; RT "Self-synthesizing DNA transposons in eukaryotes."; RL Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006). XX DR [1] (Consensus) XX CC This transposon is characterized by ~192-bp terminal inverted CC repeats and 6-bp target site duplications. The consensus sequence CC was built based on multiple alignment of several copies that are CC >90% identical to each other. It encodes a family B DNA CC polymerase (POLB-1_CB), retroviral integrase (INT-1_CB), ATPase CC (ATP-1_CB), cysteine protease (PRO-1_CB) and three unclassified CC proteins (PY-1_CB, PC1-1_CB, PC2-1_CB). XX FH Key Location/Qualifiers FT CDS 269..1501 FT /product="INT-1_CBp" FT /translation="MYCFKCRISTDTTDISQILSINNKQLLRGKCVVCKTK FT KCKIIPNSKSGGTLKSIKPSTKETKKSEIKLDDAYYNPETGFCGINELQRK FT TKKPIEEVKRFLNEQDVYTLHKPARKNFKSERVYVHNIDEQWQSDLVEMIP FT YAEENNDFKYLLTVIDCFSKYAWVIPLKTKTGKETASALQTIFKHRKPQKM FT QTDNGKEYYNKEMKLLFKESDIRHFSTYSDKKASIIERFNRTLKEKMWKMF FT TYQGDHKWTKILDKLVSGYNNHFHRGIKMTPIEASKTENVQKVHDNLFPSK FT KLFEESPKSKFKIDDTVRITKYKAVFAKGYLPNWSTEMFKISEVHPGEVIS FT YSIRDLADEEIKGKFYEEELTFFNNVNDEHKIESILKRRTRKGQKELFVKW FT YGYPDKFNSWIPDTNLN" FT CDS 2890..2030 FT /product="PY-1_CBp" FT /translation="MIEAIDKILVVDAPIVTDTSIQKENLISVFPSSGSSL FT NQHGEINFVIETCDQYLHLHKSYIYLEVELSKLDDAALAETDEVSLTNNAP FT MFLFDRATYSMDGVQVENIMDPGRASLMKGLLTYSSTMNKQNTFGWILETK FT DIITYKINKYTKNRKGTITFCIPLTHIFGFAECYNKIVYGRKHQLSLYRSP FT ENKNSIVSSDATKFTAKMNIKRLQWIIPKIVPSLEMQIKLLNIFESSKLVQ FT MPFISRQFESYNIPNGNREFTWKMGTKYDKIKYIVVAFQCARDNNI" FT CDS 2939..5428 FT /product="PC1-1_CBp" FT /translation="MRKLFSTITVIFFLTWFQETLSKPIICTDNSPVQYFR FT IPKLHKCNYHRILNSQSEIVQYEVFKPNIIEYISEAKLCKKLVSEVSMYTD FT FSGYEHLVEKELNNYPITLAECREMINSKKCGFGSLTKGSSNTWSTNNKID FT VDYPNRFTSFFTPKRYYKENCIVIETKVYSHYNQTKPTNIMAEMKNCKYQD FT GFCEIKKNEIVTWDVNREQKCQYISIGILDGMYSNKLWVNNKNQIALNFQS FT DKTIQDCNSSLMISDEGFAVKRINRAASQYSPRQIPVSIPSHSQRQQLEED FT RRKREQEEQRKQQEDNRRREQEDSRKREEQSRRDQEDARRRDQERQKQNEA FT DFEKRKQEKLKREEETEKKKQEKIRKAQDEAVRKLIQQRQEEDWTVHDEKP FT KDNRHPPKSNRTKREITDHRAIFQPLPLPDYNEYLKIKQDCDNLPSYEAFK FT NSRDGCDSLTSYTNFINSIANYEKNQQHLNLSQTWRPLPFPGYEEYLSIKE FT DCNILPTYEEYKTIRDSCHAFPSYTDFIKRIAKYEMFETGKLRRKRELYSD FT FQAAGEFQYLENQSNNLIRHTTEVMCDIFNEQNEVLESLIRENPRRYIQKQ FT LNHTAIKVKLIDSQEPVVQVTFCKEIDEEEIDFIDVTHFDGHKLSLALTLG FT QIPIKIKSLGDKVWYYKNDYSGGVISSKPQLHPMIDFRTNITNMRNFKEFD FT LKFLDDKVVFHEHILLDLKTNIEEELIEEMREKSDVSIQVHANNQDSTLPH FT EILDDVEGFFGKWWLRIWRVGVTLGVAVVYLFVGRSIWMILSPKTFIDRRN FT NRRRRREYEAVELRQMIQRPSIHSLTVD" FT CDS 14803..13748 FT /product="PC2-1_CBp" FT /translation="MNFNQSQLFESPRNIIVLGNTGSGKSSFVRHVIYQEF FT LAGRGFDYIFLICATKTETEENDSCNIVFKNHRIVIDDKYPVDEMINNFKT FT WGEENVKKSKLDGKPLPKVLILYDDVSKFLKNKMKGFGDISRHFNMWNMFL FT VHRTTYLDADTRGSCRVWIFLSEVDKNIDPFVSKYADNNNFDKCVLIYDTT FT AHGSKNEQISYLRKSDIKLNYNSDIVLNKTSGIDKEMAANFFYNPEAIDTT FT GFSEEEFAKWKVFLAGFKSLNLKIKLKDLLQRPDDKSSIPIERKTLVEREK FT PFDSRMNFIRPNVKFSIPEEEASTSSEEKIYADSPSEYESETDDRSSVESI FT SEILSRIHN" FT CDS 6084..6824 FT /product="ATP-1_CBp" FT /translation="MKSDFTDYSIQNYYSKRNNNPLLPSSLRACIIGKSGC FT GKTNLLMNLLLDEYCGEDYLDYDNLYIFSTTLFQPCYQALINGFANGLSKK FT EIRECFRTQNFMVDKKENKEISIHISENCDDIPDPSSIDPNRKTLIIFDDL FT MLEKQNKIEQYYTRGRHNNIDCFYISQNYIKLPKNTIRENANFFIVFSQDK FT MNLEYIYRDHCGEVDKPTFLEMVTEIWKEKHNFFTIDKTSDSDNGKFRKML FT KYFFVL" FT CDS 15264..14851 FT /product="PRO-1_CBp" FT /translation="MLSEFRKKLRPLTDVDILKLTKDLHIKNFRGVYMRDS FT LPDEPQKNEVAIVNLDNKEGKGTHWVCYKKDMHNLYYFDSFGLDPPDELVR FT YLKQNNQDSQITLSTFQIQNFDTHHCGYYCLLLLKLLEKYDFKNVIINLI" FT CDS 10152..13745 FT /product="POLB-1_CBp" FT /translation="MEVEDYSKLTRDQLRAVLGSKKTMNKANIRAMKKEDI FT LKELERLSDQQNQENQDAINRESNYQLRKLFPFDKTVFSEYKEVGDVLRDT FT IHTGNSNNIQSFLNKKESDVFKDIYKDSSVKIYFSLSCEMKKEGTEEARLD FT HLTTTSKALHKGENRKSFYETVKLDLINRLQQHQGRGSGFRLNRIIGLRMY FT QTRIRSLSGSKYIELPDWIKNKKAVINIQNKDDKCFMWCILAHLFPVEQNP FT DRVSKYKDHVSKVNFDGFDFPFQVKDVDKFEKRNNLAINILVHNVEDDEKI FT NSYKVSKKVNVDVDRVVNLLLVTDNSGEGHYCLIKNIDRLMNTQNGRRNKF FT CIRCHNNFYSEEKYENHLSDCMNNSPLQMIKPSKDYIEFDGIQKTQKQRYV FT CYADFESVIYKIDNVSRSPSESWNENFGKHVASAFCVVVVDSFTNTIYDMK FT SYIGYDTILKFNEYILEVCEKLLSIADMRMQKLTFEEVESFHSCESCPACG FT NKFCGDKVRDHDHWTGLYRGPLCNACNLLKRRNNFIPVFFHNLKGYDSHLI FT ISDDKSSELLKERGVEIKSISANIEKFISFSYHFHDKDRKKYEIRFLDSLG FT FMPSSLDYLSGNLEDDECIITKKYYNNEHLFHLMRRKGVYPYDFMDSFKKY FT SNTELPPIEDFYNSLSGETISNESYEYAQQVWKDMSCQTLEDYTRTYMIND FT VLLLADVFETFRNVSLKEYKLDPCWYYTSPGLAWDAMLYKTGVKLQTIKDV FT EMYNLIEKGIRGGMCNAMLRYSKANNKYMPNYNPEEESKYLLYLDANNLYG FT WAMSQKLPYDEFEFINAADFSMEMIENLNSQGKGCILEVDLDYPDSLHDKH FT NDLPFCSENKRVGTTNKLINDFSPKRNYVIHYKNLLQAIQQGLVLKKIHRV FT VTFKESNWLASYIELNTNLRKKAKNEFEKDFFKLMNNSVFGKTMENVRHRV FT DVKVVTDMDKVMKLAGSNNFKQRHIVNNNLILVEMTQKSIKLDKPIYVGMS FT ILDLSKYLMYEFHYDVMLPKYSSNLRLCYQDTDSYIYEIKTDDVYEDMQSM FT KEHFDFSDYPTDNKLYSIENKKVIGKFKDELNGKIMTEIVAFRPKQYAFKI FT DDGSEQKKNKGIKKSVVKKEMTFNDYKNCLENRTIERKQQTLISSSKHEIS FT SVRQNKVVLNNIIGKDKETKRYFVDNINSLAFGHYRIKN" XX SQ Sequence 16633 BP; 5807 A; 2733 C; 2823 G; 5270 T; 0 other; agtagtataa aaagtcacgc tctagcgcag ttttgggccc gcctctaatt attaccactt 60 ttgtcaaaat ttcatatcaa tctccaagga taacccaatt aatcaatcaa aaacgacctt 120 ttaaaatcac cccctatttt cccgaaaatt cctcgggccc tccatcagat ggtcagcgct 180 cctttagcgc tccgctggcg ctttgagaat tctattctta acaccaattt caatctcaca 240 tattcttcag caaatttttt gtttataaat gtattgtttc aaatgtcgga tcagtacaga 300 tactaccgac atatctcaga ttttgagcat taacaacaag cagttgttga gaggaaaatg 360 tgtagtatgc aaaacgaaaa aatgcaaaat aattcccaat tcaaaaagtg gaggtacttt 420 aaaatccatc aaaccctcta ccaaagaaac taaaaaatcg gaaatcaaac tagacgatgc 480 atattacaac cctgaaactg gattttgtgg aatcaatgaa ctacaaagaa aaactaaaaa 540 gccaattgaa gaagtaaagc gatttctgaa cgaacaagac gtctacactc ttcataaacc 600 agctcgtaaa aatttcaaat ctgaaagagt ttatgttcac aatattgatg agcaatggca 660 atcagatctt gttgaaatga taccgtatgc agaagagaac aacgatttca aatatcttct 720 cactgtcata gactgtttca gtaagtatgc ctgggttatc cctctgaaaa caaagactgg 780 aaaagaaact gcaagcgctc tacaaacgat tttcaaacac agaaaacctc aaaaaatgca 840 gactgataat ggtaaagagt actacaacaa agaaatgaaa ctactattca aagaatcaga 900 tattcgccat ttctcaactt attccgacaa aaaggcgtct attatagaaa gatttaatag 960 aactctcaaa gaaaaaatgt ggaagatgtt tacctatcaa ggtgatcata aatggacaaa 1020 aatattggac aaactagttt ctggatataa taaccacttt catcgaggaa taaaaatgac 1080 tcctattgag gcttcaaaaa cagagaatgt gcaaaaagta cacgacaatc tttttccttc 1140 gaaaaagctg tttgaggaat cccccaaatc caagtttaaa atagatgaca ctgtcagaat 1200 cacaaaatac aaagctgttt ttgctaaagg ttatctcccc aactggagta cagagatgtt 1260 taaaatttct gaagtgcatc caggtgaagt tatcagttat tctattcggg atttagcaga 1320 cgaagaaatc aaaggaaagt tttatgaaga agagctaaca ttcttcaaca acgtaaacga 1380 tgagcataaa attgaatcga tattaaaacg tagaacaagg aaaggacaga aagaattgtt 1440 tgtcaagtgg tatggttatc ctgataaatt caattcttgg atccctgaca ctaatctcaa 1500 ttaaacactt actactttga ctctattatc tttaatttca acaatatttt cactcataat 1560 caaacaataa cattttgtgt tttttacaat actctttgaa aaggaagctt tgattgtgac 1620 atcaggtctt gattgaataa ttctatcatt ctgtttggat acatcaaata ctaacagagg 1680 gtagtagtaa taatatacat cttcctccat aaaaatataa tcctttgtcg attcatagta 1740 actgtttcta aactctttag caaaattgta ttgttgtaca gcattaaact tatcgaaatc 1800 aaatttcaaa cagtcatgag gatatctctc tgaatttaat tcaacataaa tttcttctaa 1860 tcctttgtcg attcatagta actgtttcta aactctttag caaaattgta ttgttgtaca 1920 gcattaaact tatcgaaatc aaatttcaaa cagtcatgag gatatctctc tgaatttaat 1980 tcaacataaa tttcttctaa tccacaattg tcaaatttac tagcattcag atattgttat 2040 ccctagcaca ttgaaatgct actacaatat attttatttt gtcatatttt gtacccatct 2100 tccatgtgaa ttccctatta ccattaggga tattatagct ttcgaattgt ctagaaatga 2160 aaggcatttg tactaactta ctgctttcga aaatattcaa taatttaatc tgcatttcaa 2220 gactagggac aatctttgga ataatccatt gtaatctttt gatgttcatc ttcgctgtaa 2280 attttgtagc atctgacgat acaatgctat ttttattttc aggagatctg tagagtgata 2340 actgatgctt cctaccatag actattttgt tgtagcattc agcaaatcca aagatatgtg 2400 tcaacggaat gcaaaaagtt atagtgcctt ttctattttt cgtatattta tttatcttgt 2460 atgttataat atccttagtt tctaaaatcc agccaaaagt attctgcttg ttcatagtac 2520 tactataagt caaaagacct ttcatcaaac tagctctacc aggatccatt atgttttcta 2580 cttgaacacc atccatacta tatgttgctc tatcaaacaa aaacattggt gcattattag 2640 ttaaggagac ttcatcagtt tctgctaaag cagcgtcatc taatttggaa agttctactt 2700 cgaggtaaat gtaagactta tgcaagtgta gatactgatc acatgtctca ataacaaaat 2760 taatttctcc atgttgattt aaactagaac ctgaagaagg aaaaacactt atgagattct 2820 ctttttgaat ggaagtatca gtcacaatag gagcatcaac tacgagtatt ttatcgatag 2880 cctctatcat tatttcaatt tataaaggaa gaaaaggaaa tattttttat gttaataaat 2940 gcgcaaactt ttcagtacta taacggtgat tttcttcttg acatggtttc aagaaacatt 3000 aagtaagcct attatttgta ctgataactc tcctgtccaa tatttcagaa tcccaaaact 3060 acacaagtgt aattatcaca gaatactcaa cagtcaatca gaaattgtac agtatgaggt 3120 tttcaaacca aacattattg aatacatttc tgaagcaaaa ctctgtaaaa agttagttag 3180 cgaagtatcc atgtacacag acttttctgg ctacgaacat ttagtagaga aagaattgaa 3240 caactatccc ataacacttg cagaatgtag agaaatgata aacagtaaaa aatgtgggtt 3300 tggatcttta acgaaaggta gttctaacac atggagcacc aataacaaaa tagatgtaga 3360 ttatccgaat agattcacta gcttcttcac tccgaaaaga tattacaaag aaaattgtat 3420 tgttattgaa acaaaagttt actcacatta taatcaaacc aagccaacta atattatggc 3480 tgaaatgaaa aattgtaagt atcaagacgg tttttgtgag attaagaaaa atgaaatcgt 3540 cacttgggat gtcaacagag agcaaaaatg tcaatacatc tcgattggaa tactagatgg 3600 aatgtatagc aacaaacttt gggttaacaa taaaaaccaa attgctctca acttccaatc 3660 agataaaact atacaagatt gcaattcgag tctaatgatc agcgatgaag gttttgccgt 3720 aaaaagaatc aacagagctg catcacaata ttctccgaga caaattccag tatctattcc 3780 atcacactct caaaggcaac aactggagga agatagaaga aaacgtgaac aagaggagca 3840 aagaaagcag caagaagata atagaagacg tgaacaagaa gacagtagaa agcgtgaaga 3900 acaatcaaga cgtgatcagg aagatgctag aagacgcgat caagaaagac aaaaacagaa 3960 tgaagcagat ttcgaaaaaa ggaaacaaga aaaattgaag agagaagaag aaacggagaa 4020 aaagaagcaa gaaaagatta ggaaagccca ggatgaggct gtaagaaaat taatacaaca 4080 acggcaagaa gaagattgga ctgttcatga tgagaaacca aaagataatc gtcatccacc 4140 aaaatcaaac agaaccaaaa gagagatcac agaccatcga gcaatcttcc aaccactacc 4200 cctaccagat tacaatgaat acttaaaaat aaaacaagac tgtgacaatc tcccaagtta 4260 tgaagctttc aagaatagca gagatggatg tgattcgctc acaagttata caaatttcat 4320 caacagcatt gcaaactatg agaaaaatca acaacacttg aatttatctc aaacctggag 4380 acctctacca ttccccggct acgaagaata tttgagtatt aaagaagatt gcaacattct 4440 cccgacttac gaggaatata aaacaatcag agatagctgt catgcatttc ccagttatac 4500 agactttata aaaagaatag caaaatatga aatgttcgaa acaggtaaat taagaagaaa 4560 aagagaatta tactctgact tccaagctgc aggagaattt caatatctag aaaaccaatc 4620 gaacaatcta atacgacata ctactgaagt tatgtgtgat atcttcaatg aacagaatga 4680 agttcttgaa agccttatca gagaaaatcc aagaagatat atccagaaac agttgaacca 4740 tacagctatc aaagttaaac tcatcgattc tcaagaacca gttgttcaag ttactttctg 4800 caaagaaatt gatgaagaag agatagactt tatagacgtt actcatttcg atgggcataa 4860 attaagtctt gctctcacac tcggacaaat cccaattaag attaaaagcc ttggagataa 4920 agtttggtat tataagaatg attattcagg aggtgtcata tcaagcaaac cgcagcttca 4980 tcccatgatt gattttagaa ctaacattac taatatgaga aacttcaaag agtttgattt 5040 gaaattccta gatgataaag tagtttttca tgaacacatt ttgttagact tgaagaccaa 5100 cattgaagaa gaactcatag aagaaatgcg agaaaaatct gatgtctcta ttcaagttca 5160 tgctaataac caggattcta ctttacccca tgaaatatta gatgacgtag aaggtttctt 5220 tggaaaatgg tggcttagaa tttggagagt tggtgtaaca cttggcgtgg ctgtagtgta 5280 cttattcgta ggaagatcaa tttggatgat actttcacca aaaactttca ttgataggag 5340 aaataataga agaagaagga gagaatatga agccgtagaa ttaagacaaa tgatacaacg 5400 tccatctatt cattctctca ctgtcgatta atttttacct tattaaatga gattctttaa 5460 cacccaagaa caaagttcaa cttctagtta tgttattaat agtccaaaag aaaacaatca 5520 gataaaatta atagaaaatg caaaccctca aaaagaattt ccaagcacaa aaaacgagga 5580 aacggctatt tctaaggagt cttttccctc tagaaaacca aaaaccacaa acaaatcgaa 5640 gatatctaaa gataacaata attttctgaa ggcacttaaa agtggatctg gttttaagag 5700 aatctaaata atgtgtagct ccatatgtat atcacaagtt ttagaatcaa taaggttatt 5760 cttttcatct acaagtctga atgtaagagt attgcaatta ttgacagctt tgtggtagat 5820 caaattgatt ggctcatact tcacattttt gtcgttatta ttgaatttac agattatatt 5880 gctttgagct tcattcaaaa acgaatcgca gataagatta caagacaaat aaatccaact 5940 gttcttattc caatctaatg ttccttcaac ttttactatg gcaatagagt ttaccttgaa 6000 gtcatgtgga aagtcaagtt gaaacgcttt ttcgctggat tttaggttta agaataagtg 6060 aaccatttat taagtactaa attatgaaat ctgatttcac tgattattcg attcaaaact 6120 attattctaa aaggaacaac aatcctcttc ttcctagttc tttaagagct tgtataatag 6180 gaaagtctgg gtgtggcaaa actaatcttt taatgaactt attattagat gaatactgtg 6240 gagaagatta tttagattat gataacttgt acatattctc taccactctt ttccagccat 6300 gctatcaagc acttatcaac ggttttgcga atggtttgag taaaaaagaa atcagagaat 6360 gttttcgaac gcaaaatttt atggttgaca aaaaagaaaa taaggaaata tctatacaca 6420 tttctgaaaa ctgtgatgac attccagatc ccagctctat agatccaaat agaaaaacgt 6480 tgataatatt cgatgattta atgctcgaaa aacagaataa aatagaacag tattacactc 6540 gaggtagaca taacaacatt gattgctttt acatttcaca aaattatata aaactaccga 6600 aaaatactat tagggagaac gccaactttt tcatcgtttt ttctcaggat aaaatgaatt 6660 tagaatatat ctatcgggat cactgtggtg aagtggataa acccacattt ttagagatgg 6720 ttacagaaat ttggaaagaa aaacataact tttttactat tgataagact agcgactcgg 6780 acaacggaaa gtttagaaag atgttgaagt acttctttgt cctctgaaca cattttagac 6840 atgtttttcc tggcgaacat ataaaaatcc gttttccgtt ttccgtattc cgtattccgt 6900 tttccgtttt ccgttttact aatcgaagta catgttttat tccgttttgc taagtaaaac 6960 ggaaaacgga aaacggaaaa cggaatacgg aaaacggatt tgtatatgta cgctagaaaa 7020 aacacccatt ttttaaagat tgcgagcata gaataggaca tccggatgat tgattaagtc 7080 acgctgaagg tgcaccagcc accgggctga taacataata aatgactaag tttatatata 7140 gaccacatag acaacatatg tatttgcatc aacatacgtg tgatgatgaa tgtcgagtca 7200 aacacctagc tgcctataaa aacttaggga aaaactggct caagaaagat ccaaacgttt 7260 actacttcct atcatcggac cgttttctat ctgacacatt tatagtgatg aaaactatta 7320 aaaaacattc atttttctgt gaagatgaat tatacgaaga catagacaag aattttaaaa 7380 ccagattcta tgctggttct cagcctatat atatttattg caatgataaa cctttttgca 7440 aactttatcc aaatagtgtt attgaaatca aaatgactag gaaaactaat agatttaata 7500 aaactagaaa aatagatgaa cttaataata aaaaattacg cgaggaagaa cataggagaa 7560 agatgagaat aaatcgtaaa aatcttagag acttcccaac aaatagttca aactttcctg 7620 ataggactcg aacgaaaata aatcgagata ttcccgactt tcagttaggt ggtggttgtg 7680 atagagaaca acttagacgc gcattaaatt cttaatgtat ttatttatcg tctttattcg 7740 gaaacctagg aactctttat gttcaatgat acactggaac gtatcaagat caactgttga 7800 acgcccatct aattttttta ctattcgtaa ccccacgcgt tcctccttac ttggtagctt 7860 tacacgtatt gttttagcat agattttttg tttaatattg tctttcagtt tttttcgaat 7920 atccttttgt actcttgcac atgtcattat attttccatc tgaccagctg tgaacttttt 7980 aacagggaaa aaaatccgaa gggtttgatc tagtttgacg ttgtttcgct tcgatttcat 8040 gtttttctgc ctctgcaatg agtttttgca aagcttttcc gcggttttca acactttcgt 8100 tttttattac taactgttgt agacggtgaa cttgtttttt caattcgtgg ttattatgtc 8160 tttcatctat attagactcc agcagaagct gttgatatgt agcaaaaagt ttgatcttca 8220 aattattttt atgagaacag ttttctatag atttaatctc gttagcgata tttattaatt 8280 cgttagcata ataagcacat gcctgactca tattattcaa atgctctgga gtataattac 8340 aaacaccttc gacaatgtct aaacattttt caacacctcc taggatactg atggcctgct 8400 ttagtcctac atctctaaaa tcttcttcag ttatagttat agttccagtt tcactacccc 8460 taactgattt tcccacacca ctaaatggtt tctttttcat tcttctatga tcacttgttt 8520 gaatatcatt caacgttctt gtgttactca tttatatagc aaaccatact ataaaaataa 8580 aaataataaa tttttttgct aaagtcaaca gacaggtgtt gaactaattt ccgacttaaa 8640 gctaggtaaa tataatggtg ataaaagatt tattttattg gagtttcttt caatattcga 8700 aagtttatgt tcagaggcaa tctttagctt aacttctgca tgaggttgag gggatgggtt 8760 gttcttattt gaacagtatt tactaacatc catctctttt gctaactctt ttaatccatc 8820 gtataaagtt gttctagtaa agttatgttg caaaacccat tttctcttgt taattctgag 8880 aggagacttg tcttggtcac ttatatacat tctagccagt acaacctttt gagacattta 8940 aatagtgtga aaaaataagt aaaagagtat gtaaaaaaac cataaaaata tgtaagattg 9000 tgttggtata gaaaaaataa gtgtaagatt atgtaacaaa ctgtataaat atgtaagctt 9060 gtgttggtat atgtaagatt gtaaaacact aaatcaaatc tactactgaa ttctacaatc 9120 caatattcaa gtaaattact cccaagtctt tctttttaat ctttttctgt ttcactagtt 9180 catctagaat ggcattgatc ttattatatt ccccattgtt accagcctga aatgaagcaa 9240 tggatagtct caaggagtcg attagagaat tagtattcga tggaatgaat gaaatagaac 9300 tgcctgatgt tgttgtagaa gtttttgcaa caaaatagtt agcttttata aacgcccact 9360 tgtcacttga atcggaatta taccttttgc tacttttatc aaacccctga tacaagccat 9420 tagagcataa taatattgtt tggtaatttt ttgtatcttc tgcgtcaatc tttttcaagt 9480 tgggggactt tttggttaag agctccatta atccttcagt tgcagtgtac tcatcattgt 9540 taattcaagt tgggggactt tttggttaag agctccatta atccttcagt tgcagtgtac 9600 tcatcattgt taatcttgat catgttctgg gtaaacgtaa tatctttgtt accgatagta 9660 tacttttttt catctttgtc aaacttaaca gaatagccag cattacttct atcggagttg 9720 tcttgaagat aactaacaat tagactacta actacaagag gggaagatga actaggtaaa 9780 atttctttcg gtaaatgcac tgatggttgt ttaataagac tcttttgttt tattgtcggt 9840 gtacctattg aatgttgaga aagaggtttg aagttgttca gagtttcaac tattttgttt 9900 ttctcatcaa ttatttcttc ttgaagcttt ttatttgatt ctaaaattgg tttaaataca 9960 tctattctat gatcttctat atgttccaag tctgaacgct cttgtaggtt tttaactttg 10020 tgctcttttc ggtttttcaa atagctctga actatgtcgt ttctcttttt agggtcataa 10080 atttcgagaa tcgagtgcat ttattagtta aaaagtatat taaaataatc gtgagtattt 10140 ttagctaata aatggaagta gaagattaca gtaaactaac cagggatcaa ctacgagctg 10200 ttctaggctc taagaaaaca atgaacaagg cgaacattag agctatgaaa aaagaagata 10260 tcttaaaaga actcgagaga ttatctgacc aacaaaatca agaaaaccaa gatgctatca 10320 atagggaatc gaattatcaa ttgagaaagt tgtttccttt tgataaaact gtttttagtg 10380 aatacaaaga agttggcgat gttttgaggg atactatcca cacaggaaac tctaataata 10440 ttcaatcgtt cctaaataaa aaggaaagtg acgtctttaa agacatttat aaggatagta 10500 gtgtaaaaat atatttctct ttatcatgtg aaatgaaaaa agaaggaaca gaggaagctc 10560 gtttagatca tttgactacg actagtaagg cattacataa aggagagaac aggaaatcgt 10620 tttacgaaac agtgaaatta gatttgataa atagacttca acaacatcaa ggtagaggat 10680 ctggattcag actaaataga atcatagggt taagaatgta tcagacaaga atcagatcat 10740 tatcaggatc aaagtatata gaactacctg attggatcaa aaataaaaaa gcagtaatca 10800 atatacagaa taaagatgat aaatgtttca tgtggtgtat tttagcacac ttatttccag 10860 tagaacagaa ccctgacaga gttagtaaat ataaagatca tgtttctaag gttaactttg 10920 atggttttga ttttcctttc caggttaaag atgtggataa atttgagaaa agaaacaact 10980 tggctattaa tattctggtt cataatgttg aagatgatga aaaaataaat tcatataaag 11040 tttctaagaa ggttaatgta gacgtagata gagtagttaa tcttttgtta gtcaccgaca 11100 attctggaga aggacactat tgcttaatca aaaatataga tagattaatg aatacccaga 11160 atggcagaag aaacaaattt tgcatcagat gtcataataa cttttacagt gaagaaaaat 11220 acgaaaacca tttgagcgac tgtatgaata attctccact ccaaatgatc aaaccttcga 11280 aagattatat tgagttcgat ggaattcaga aaactcaaaa acagagatat gtttgttatg 11340 ctgattttga atctgttatt tataaaattg ataatgtgag ccgttcaccc agcgagtcat 11400 ggaacgaaaa ttttggcaaa catgtggctt ctgccttctg tgtagtcgtt gtcgattcct 11460 tcactaatac tatctatgac atgaaaagct atattggcta cgacacaatt ttaaagttta 11520 atgaatatat tctagaagta tgtgaaaaac tcttaagcat cgctgacatg agaatgcaaa 11580 aattgacctt tgaagaagtt gagtctttcc atagttgtga atcatgcccc gcctgtggaa 11640 ataagttttg cggggataaa gttagagatc acgatcattg gactggatta tacagaggac 11700 ctctttgcaa tgcatgtaac ttgttgaaac gtagaaataa ttttatacca gtattcttcc 11760 ataatctaaa aggatacgat tctcatctga ttatcagtga tgacaagtcg agtgaattat 11820 taaaggaacg aggtgtagaa attaaaagca tctcggctaa cattgaaaag tttataagtt 11880 ttagctatca ttttcatgat aaagatcgta aaaaatatga aataagattc ctagatagtt 11940 tgggattcat gccttccagt ttggactatc tcagtggtaa tttagaggat gatgaatgca 12000 ttatcacaaa aaagtattac aataacgaac atttgttcca tctaatgagg cgaaaaggtg 12060 tctacccata tgattttatg gattccttta aaaaatattc caacacggaa cttcctccga 12120 ttgaagactt ctataacagt ttatccggag aaacaatcag caatgagagt tacgaatacg 12180 ctcagcaagt gtggaaggat atgagttgtc aaactttaga agactacact agaacttata 12240 tgattaacga tgtgttacta ttagcagatg tttttgaaac ttttagaaat gtgtctctca 12300 aagaatataa gctagatccg tgttggtact atacatctcc aggattagct tgggatgcaa 12360 tgctatacaa gactggtgtt aagttacaga ctatcaagga tgttgaaatg tataacttaa 12420 ttgagaaagg tattcgaggg ggaatgtgca atgctatgct cagatattct aaggcaaata 12480 acaaatacat gccaaattat aatcccgaag aggaatcaaa atacttactc tatttagatg 12540 caaataactt atatggatgg gcgatgagtc aaaaattgcc ttatgatgaa tttgaattta 12600 taaatgctgc agatttcagt atggaaatga tagaaaatct taattctcaa ggaaagggat 12660 gtatacttga agttgattta gattatcccg atagtctaca tgacaaacac aacgatttac 12720 cattttgttc agagaataaa cgagttggaa ctaccaataa attaatcaat gattttagtc 12780 caaagagaaa ttatgtgatt cattataaaa accttttgca agctattcag cagggtttgg 12840 tgttaaagaa aattcatcgt gtagttactt tcaaagaaag caattggctt gcctcttata 12900 tagaactaaa taccaacttg agaaagaaag caaagaacga atttgagaaa gactttttca 12960 agctaatgaa caattctgta tttggtaaaa ctatggagaa cgttagacat agagtggatg 13020 ttaaagtagt gacagatatg gataaagtta tgaaactggc tggtagcaat aatttcaaac 13080 agagacatat tgtgaacaac aatttgattt tagtggaaat gactcagaaa agtattaaat 13140 tagacaagcc tatttatgtt gggatgtcta ttcttgattt aagtaagtat ctcatgtacg 13200 agtttcacta cgatgttatg cttccaaaat attcttcgaa tttgagattg tgttatcaag 13260 atactgattc ttatatctat gaaattaaaa ctgatgatgt ttatgaagat atgcagtcta 13320 tgaaggaaca ttttgatttc tcggattatc ctacagacaa taagctgtat agtattgaga 13380 acaaaaaagt aattggtaag ttcaaagatg agttgaatgg caaaataatg actgagatcg 13440 ttgccttcag acctaagcaa tatgctttca aaattgatga tggatcagaa caaaagaaga 13500 ataaaggaat aaaaaagtct gtagtcaaaa aggaaatgac tttcaatgat tataaaaatt 13560 gtttagaaaa tagaacgatt gaaagaaaac agcaaacgct tatttcctcc agcaaacatg 13620 aaattagtag tgtaagacaa aataaagttg tcttaaataa tataattggt aaggataagg 13680 agactaaaag atattttgta gataacataa actccctagc ttttggacac tatcgaatca 13740 aaaattagtt gtgaatccta ctcaatattt cacttatcga ttcaactgaa gaacgatcat 13800 ctgtttccga ttcgtattct gatggagaat cagcatatat tttttcttca cttgaagttg 13860 aagcttcttc ttctggaatc gaaaacttca cattaggtct tatgaaattc atccgactat 13920 caaatggttt ttcgcgttct actaatgtct tccgttctat tggaatcgaa gatttatcat 13980 caggtctttg aagaagatct tttagtttta ttttaagatt aagtgatttg aagcctgcta 14040 gaaatacttt ccattttgca aattcctctt cactaaaccc agtagtgtcg atggcctcag 14100 gattatagaa aaagttagca gccatttctt tatcaattcc cgatgttttg tttaaaacaa 14160 tatcagaatt ataattcaat tttatgtcag attttcttaa ataagaaatc tgttcatttt 14220 tactaccatg tgctgttgta tcatatatta acacacattt atcgaaatta ttattatcgg 14280 catacttgga tacaaatgga tctatgtttt tatctacctc agataagaaa atccaaactc 14340 tacacgatcc tctagtatca gcatcaagat atgttgttct atgaaccaaa aacatattcc 14400 acatattaaa atgtctactg atatccccaa atcctttcat cttatttttt aagaatttag 14460 aaacatcatc atataaaatt aatactttag gaaggggttt gccgtctagc ttactctttt 14520 ttacgttttc ttcgccccat gttttgaaat tgtttatcat ctcatccact ggatatttat 14580 catcaattac tatgcgatgg tttttgaaaa ctatattaca tgaatcattt tcttctgttt 14640 ccgtttttgt agcacagatt aaaaagatat agtcaaagcc ccttccagct aaaaattctt 14700 gataaataac atgtctaaca aaggatgatt taccacttcc tgtgtttcct aagacaatta 14760 tattgcgcgg agattcaaat aactgagatt gattgaagtt catttattac ataatttttt 14820 caacataata aactattttg aaaactttta aatcaaattt attatgacat ttttgaaatc 14880 atatttttcc aacagtttca ataaaagtag gcaataatag ccacaatgat gagtatcaaa 14940 gttttgaatt tgaaaggtgg aaagtgtaat ttgggaatct tggttgtttt gtttcaaata 15000 tctgactaat tcgtcgggag ggtccagacc aaaagagtcg aaataatata gattgtgcat 15060 atccttctta taacaaaccc aatgagttcc cttgccttcc ttattatcaa gatttacgat 15120 ggcaacttca tttttttgcg gttcatcagg aagactatcg cgcatatata cccctctaaa 15180 atttttaata tgtaaatcct ttgttaattt taagatatct acatctgtta atggtctcaa 15240 ttttttcctg aactctgaga gcatttacat tgagcagtta ttgtgtcttg tgaactctgc 15300 ccattttgta gtttgtgctc ttggaaacag tgataacgag gcatgtctag gcaccacaaa 15360 aaaattttca taatagactt ttcacagttt ttattgttgg attgtcttct cccatcttat 15420 agaagtctgt tcccaaaatt tcagcgaaaa atctttattc aatcccgagt tacagaccct 15480 tttgtaccag acctccatgt actgactttc tccccttttt ttgcggtgcc taggcatgtc 15540 ttatattgaa tatggtgtgc atactgataa gggcgtgtgg ctcaggtggt aagagaattt 15600 gccatgaccc tgttccactc gagttcggtt ctcgtttttg acaacttctt gtgttcgagg 15660 cagtccgctg ccctgcttca cacttccgtg atagcgggcg gatccctcca aaggcaattc 15720 actgcccagc tccacatttc cgtggtagcg ggtgaatccc tttaacacca ataaggcagt 15780 tcattgctca gctccacatt tccgtggtag caggtgaacc cctttacgtc actaactatg 15840 aaccgaacaa gatttggaca cgccccctaa tttctcttgt ttaaaaatct tcttcaaaaa 15900 aacttctcta aaaataaaaa aaagcctgct caaaaaaaaa aatgcaactt ctcaggaact 15960 cttcctctac tcattgaacg taagttaagc tgctcgcgtg cagacgccat gtttggggtt 16020 catggctaag gtgttgtcaa attcactctc tagtgaagcg gctggcaaca ctgaacgtcc 16080 cccagttctg aataatcgca caaagttaag attgtaggca tgcatacagt cgccatgttt 16140 ggggttcatg gctaagtatc aagatactga acgtccccca ggtgctagat atccactcaa 16200 agttaagctg cataagtgta gatgccatgt ttggggttca tggctaagta tcaagatact 16260 gaacgtcccc atgttctgga taatcgccca aagttaagac aaactgggta agtgataaac 16320 tcgtggtaga gatccttaag gtgttaagaa tccgtagtgg agagacttga ggtatactgg 16380 aggatataac cgtggtggag aggtggcaat aggctgacgg agagccgacg ataatctgac 16440 agagcgctaa aggagcgctg accatctgat ggagggcccg aggaattttc gggaaaatag 16500 ggggtcattt taaaaggtcg tttttgattg attaattggg ttatccttgg agattgatat 16560 gaaattttga caaaagtggt aattattaga ggcgggccca aaactgcgct agagcgtgac 16620 tttttatact act 16633 // ID MERLIN8_CB repbase; DNA; CBR; 913 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Merlin; DNA transposon; Transposable Element; Nonautonomous; KW Cb000254; MERLIN8_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-913 RA Pavlicek A. and Jurka J.; RT "MERLIN8_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(1), 43-43 (2006). XX DR [1] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 95% identical to the consensus. MERLIN8_CB CC contains 48bp-long TIRs and is flanked by 8bp duplication of an CC AT-rich motive. Related to MERLIN7_CB. XX SQ Sequence 913 BP; 292 A; 179 C; 152 G; 290 T; 0 other; ggctctttat gatttaacgg gggtttaaac aattaacggg ggtttaaaaa attaacgggg 60 gttttgaata tttgaagggg ttttgggaat taacgggggt ttaaatatta aacgggggtt 120 ttcagaaggt gtcagagtca tggttgggaa agtccccaaa atgttccaaa gtgctacagt 180 ttcttgtttt ttgctcattt cagttgatct attcttttct gaaatcattt tttttttttt 240 tcttttttca tttctaaagt tttatggcac tgttctagaa ttgcggaacg aatgaaaatc 300 acataaaaaa atgggtagaa aaattttgac actaggaaac cttcgtagat tataggctta 360 ggctgaaacg ccatatttcc ttcatctaag tcatcggaaa attggcggca agttacataa 420 ctctgctagt tctaacctcg aatccaaaat acaaatgtac cgctttcccg gatcacttga 480 ctcgccaaca ccattcaacc tctctaagag caactatttg atcgcccttc cctttctaag 540 cctcctgtac ctgcttccaa ggttagatga tagacttgga taaagttttt ttcgttccgt 600 aattctagaa cagtgccatg aaactttaga aatgaaaaaa gaaaaaaaca agaaaatgat 660 ttcagaaaag aataaatcaa ctgaaatgag caaaaaacaa gaaactgtag cactttggaa 720 cattttgggg acttccccaa acatcgtcct gacacttttt gaaaaccccc gtctaatatt 780 taaacccccg ttaattctca aaaccccttc aaattttcaa aacccccgtt aatttttcaa 840 atttttttta aacccccgtc aaaaatttaa acccccgtta attgtttaaa cccccgttaa 900 atcataaaga gcc 913 // ID HAT10_CB repbase; DNA; CBR; 363 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000425; DNA; KW HAT10_CB; hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-363 RA Pavlicek A. and Jurka J.; RT "HAT10_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 4(8), 204-204 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC HAT10_CB contains 11bp-long TIRs and is flanked by 8bp target CC duplications. Distantly related to HAT8_CB. XX SQ Sequence 363 BP; 84 A; 101 C; 96 G; 82 T; 0 other; caaggctgtg ccacggccgg ccgcggcggc ttttactacg gccgagccgg ccgcggcttc 60 agaaaaaata tttgaagaag ccgcggccgg cccaggctag ccgtgcggct tttcacggcc 120 ttttgaaata attgtttcat gagaaacgta gatttttttt tgaaaagtag gacaaaaaaa 180 aacgaaatta ttcaaaaact aattgatttt cacttcacgc gtttttatga ggctatccgc 240 ggccggcctc ggctagccgc ggcttttcac ggctttcaca taaaagccgc ggccggcctc 300 ggcctcaaaa atcgagccgc ggctgaggcc ggccgcggcc agccgccatt ttgcacagcc 360 ttg 363 // ID DNA2-15_CB repbase; DNA; CBR; 1536 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000275; KW DNA; DNA2-15B_CB; DNA2-15_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-828 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1536 RA Pavlicek A. and Jurka J.; RT "DNA2-15_CB - a family of DNA transposons."; RL Repbase Reports 6(4), 167-167 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 96% identical to the consensus. DNA2-15_CB CC contains 34bp-long imperfect TIRs and is flanked by AT target CC duplications. Central part is similar to DNA2-7_CB. A subfamily CC is listed as DNA2-15B_CB. XX SQ Sequence 1536 BP; 514 A; 257 C; 260 G; 505 T; 0 other; ataagaagta gcgattttca aaatttttaa ttctcgaagg aataaacaaa aatggtccaa 60 atttctgtaa ttcgtcacag aaaatactaa actactgata aatgtcataa tcgatgtgtt 120 tttgtccaga aatactttat ttcaacgcaa tcatgaaaaa tatggtttta attacattat 180 ttctgttgat tttcaatttt gcgaaaagtt acgtgatgca cagaaattga aggcttcgaa 240 ttctgggaat ttggaaattt tacgtgattc acagaaattg aacgttgcaa tttctgggat 300 ttttcacaga actcgaacgg ttcgagttct gggattttgg aaattcacgt gattcacaga 360 actcgaagct ttcaatttct gggattctgg aaaagcatgg ggggtaggga ttcaagaagg 420 gtcgtgataa agcaaaatga atattaggaa actatcgttg gacttgttgt tttccataaa 480 acggatcctt cgagcttaaa gataattgtt ttccatggga gctctatgtt ggctgaaaaa 540 ctagttgaaa attctgaatc gtattggaag ggttgaagta aaaaaacatt tttattcgaa 600 acttactatt gtcacataca gtactttagg atgaaattgg ttgagatggt ggaaaaatgt 660 tgttcaaaag ctataaaaga ttccacttgg tgttttgaaa aactggcaac actgattttt 720 aatgatttac cgtcgaagaa aactgaacga agaaaactca gttttcttcg acggaaaatc 780 aataaaaatc cgtgttgcca atttttcaaa actttcaaat tttcaaaaca tcacgtggaa 840 tcttttatag cttatgaaca aaaattttcc actatctcga tcaatttcat ttaaaagtac 900 tatgtgacaa aggtaagttt taagctttgt atttatattt ttacttcaac ccttccaatg 960 cgactcagaa ttttcaacta gtttttcagc caacagagag ctcacatcga aaaattatct 1020 tcaagctcga aggatccgtt ttatggaaaa caacaagtcc aacgatagtt tcctaatatt 1080 cattttgctt tatcacgacc cttcttgaat ccctaccccc ccccccatgc ttttccagaa 1140 tcccagaaat tgaaagcttc gagttctgtg aatcacgtga atttccaaaa tcccagaact 1200 cgaaccgttc gagttctgtg aaaaatccca gaaattgaaa cgttcaattt ctgtgaatca 1260 cgtaaaattt ccaaattccc agaattcgaa gccttcaatt tctgtgcatc aagtgttctt 1320 ttttatcacc gaataaatat atatttgtgt atcgaaaaaa ttctattgca agtacaggaa 1380 atactactcg aaaaggcttt atcgtttttt atgtaaattt gaacattttt ttcgctccgc 1440 aaagaaaatg cgaaattact gaaacttcac agaaattttg gaaatcgaag tgatttggga 1500 tgaaaattga aaattttgaa aatcgctcct tcttat 1536 // ID DNA2-18_CB repbase; DNA; CBR; 113 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 13-JUN-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000174; KW DNA; DNA2-18_CB; Interspersed repeat; palindrome. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-113 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-113 RA Pavlicek A. and Jurka J.; RT "DNA2-18_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~85% identical to the consensus. CC DNA2-18_CB has a palindrome-like structure and is flanked by TA CC target duplications. XX SQ Sequence 113 BP; 36 A; 22 C; 24 G; 31 T; 0 other; ttgtcggaat taataaaact gcgacctcgg tgtatgcaga ctcagtacaa aaattaaggt 60 gttttgcact gagtctgcaa acaccgcagg tgacagtttt ataattccga caa 113 // ID MUDR3_CB repbase; DNA; CBR; 1054 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Cb000208; DNA; KW MUDR superfamily; MUDR3_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1054 RA Pavlicek A. and Jurka J.; RT "MUDR3_CB - a family of nonautonomous MUDR-like transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC MUDR3_CB contains 41bp-long imperfect TIRs and is flanked CC by 9bp target duplications. CC There are several subfamilies with different internal sequences. CC This consensus contains an internal part with high similarity to CC a 127bp-long segment of HELITRON2_CB and distant similarity to CC a 304bp-long segment of MARINER8_CB. Partially similar to CC MUDR1_CB CC and MUDR2_CB. XX SQ Sequence 1054 BP; 320 A; 206 C; 202 G; 326 T; 0 other; gatcagaggg tacatcagtt cttagggtac atctgggagg taggttcaag gggtacatct 60 ggcgttggtt ctgagggtac atcggagaaa ggatcccagg gtacatcgac aagttcttag 120 ggtacatcaa ttaaaaattt tgtagttgtc agctgggaga tatttaggtt tacactgcac 180 tattttattt gttttttttt gtcgatttgt ttgaaaaagt acagtttttt ttcatatttt 240 ttttgactac tcgccaaatg tgcattgcag tccactgcaa ttccacgaaa actgccgaaa 300 cgcgatgtaa aagcgccaga aagatgggga tacagaaact aggaccagat aattcgtaat 360 agacagtagt agttttcatt aatttttaat aaaactggtt ttttgttgac atgagtttgc 420 tctcaaaatc atctcttaat gtcgccggtc ggccctcttg ctgtttttga aggtatcatc 480 atgttgcgat attccaagga tttgttttct tcggcaggct caaaatgtaa tagtacatct 540 attgcattct gtggatacaa gctccaataa acaaatcttc cttattaata aaacgctaga 600 ggcgtctgtc cgtcctcgtg tccgtctgta gacttttgaa aaaattgaaa aatacatata 660 tatttacgtg acccttttat ttagaaaaag tgagaaacga agatttgaaa aaaatagatg 720 gaatcgcgcc gaaggctcac cagcttgctg gtcaatcaat aaaactatga gaaactgtac 780 tttttcaaac aaatcgacaa aaaaaacaag caaaatagtg cagtttatac caaaatatct 840 tccagttgaa aactacaaaa tttttaattg atgtacccta agaacttgtc gatgtaccct 900 gggatccttt ctccgatgta ccctcagaac caacgccaga tgtacccctt gaacctacct 960 cccagatgta ccctaagaac tgatgtaccc tctgatccaa tgtaccctaa gaactcgatg 1020 tacccttttc cgatgtaccc ttggatactg agcc 1054 // ID MARINER37_CB repbase; DNA; CBR; 825 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000362; DNA; KW MARINER37_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-825 RA Pavlicek A. and Jurka J.; RT "MARINER37_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC MARINER37_CB contains 24bp-long TIRs and is flanked by TA CC target duplications. Similar to MARINER22_CB and CELE12A. XX SQ Sequence 825 BP; 273 A; 168 C; 132 G; 252 T; 0 other; ccgtaaaatc tgtattaata ttgcatgcaa gtctattgtt caagtcacct caaggggtgc 60 aactctatta gaggggcaat tcaaatagag gctgcaattc tatttttcaa actacaattt 120 gaggttaaaa ttttgaaaaa aaaacagttt tattatgaaa atcaacaaaa aaagtaacaa 180 attgaacaaa acaaaaagaa aagtatcgca tattttaaaa aatcaaaaaa tcgaggcgtc 240 actgtcatag ttattgtctt cttcttcggc atggttcact tctccatcgt cttcctcaat 300 ttcaatatct cccaaaatct cctgaatttc ttccatttct cgttctgctc gtcttgtctt 360 caataactgt acgccttctg gaatttctcc atctttcttg aaagtctcct ccatcgttcc 420 acgttatcca cgtcttccac gtgttccacg tcatccaatt tttccacgtc gaacacgttt 480 tccacgtctt ctaggtcttc ttcagaactc attgctcgtt ttgctcgctt caataaatgg 540 aaaatattgt taaaaaacaa agaaaaataa aaataaacca gaaattaggt aggtagttaa 600 aaaaaaaaaa attgaaaaac aactgtgcaa tagttcgtca cggtgtcaca gactaaaaat 660 tgtacagtac tcccggcgga gccgcaatac tgctgcagat gcaattgtat tacgggggca 720 attcaattaa aggctgcaag tctatttttc aagtaccctc aaggggtgca agtctattag 780 aggggcaatt caaatagagg cgcaatatta atacagattt tacgg 825 // ID MINISAT3_CB repbase; DNA; CBR; 300 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeat. XX KW MSAT; Satellite; Simple Repeat; Cb000133; MINISAT3_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-300 RA Pavlicek A. and Jurka J.; RT "MINISAT3_CB - minisatellite repeat."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT1_CB composed of 11bp-long repeated CC GGCTTAAAATT units. The consensus contains multiple units. XX SQ Sequence 300 BP; 119 A; 40 C; 59 G; 82 T; 0 other; aggcccaaaa atggctgaaa atggcttaaa attgtggctt aaaatgaaaa ggcttaaaat 60 tggcttaaaa ttggccttaa aattggctga aaatggccta aaattggctt aaaatggcct 120 aaaaatggct tctaaaattg gcctaaaaat ggcctaaaat tggcttaaaa tggcctaaaa 180 ttggtcttaa aaatggctta aaattggcct gaaaatggct taaaaatggc ctgaaaatgg 240 cttaaaatta aattggccta aaatggccta aaattggctt aaaattgctt aaaaataggc 300 // ID MINISAT1_CB repbase; DNA; CBR; 580 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae minisatellite repeat. XX KW MSAT; Satellite; Simple Repeat; Cb000005; MINISAT1_CB; KW minisatellite. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-580 RA Pavlicek A. and Jurka J.; RT "MINISAT1_CB - minisatellite repeat."; RL Repbase Reports0-0 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MINISAT1_CB is composed of 22bp-long repeated CC TAATTTTTTCTAGGTCATGACC units. The consensus contains multiple CC units. XX SQ Sequence 580 BP; 132 A; 103 C; 78 G; 267 T; 0 other; taattttttt taggtcatga cctaattttt tctaggtcat gacctaattt tttctaggtc 60 atgacctaat ttttaatttt ttctaggtca tgacctaatt ttttctaggt catgacctaa 120 ttttttctag gtcatgacct aattttttct aggtcatgac ctaatttttt ctaggtcatg 180 acctaatttt ttctaggtca tgacctaatt tttttctagg tcatgaccta attttttcta 240 ggtcatgacc taattttttc taggtcatga cctaattttt tctaggtcat gacctaattt 300 tttctaggtc atgacctaat tttttctagg tcatgaccta attttttcta ggtcatgacc 360 taattttttc taggtcatga cctaattttt tctaggtcat gacctaattt tttctaggtc 420 atgacctaat tttttctagg tcatgaccta attttttcta ggtcatgacc taattttttc 480 taggtcatga cctaattttt tctaggtcat gacctaattt tttctaggtc atgacctaat 540 tttttctagg tcatgaccta attttttcta ggtcatgacc 580 // ID DNA2-12_CB repbase; DNA; CBR; 262 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000098; KW DNA; DNA2-12_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-262 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-262 RA Pavlicek A. and Jurka J.; RT "DNA2-12_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >95% identical to the consensus. CC DNA2-12_CB contains 18bp-long TIRs and is flanked by TA target CC duplication. XX SQ Sequence 262 BP; 66 A; 74 C; 68 G; 54 T; 0 other; agctttccat ctcgggcggg cctcccgaaa acgccctaca cccgacaggg taacgggccg 60 ccctacaccc gccctatacg cccggtttcg tggtccaaca aaattatgtc acgctgatta 120 aacgcgcacc acactttttg aaatattttt tgacgcaaaa caataaatga aatttaattc 180 gggcgtttca aaatataggg cgtcgggcgg gcgccacacc cgggcgggtg gggcgggtga 240 aattcgcccg agatggaaag ct 262 // ID MARINER46_CB repbase; DNA; CBR; 701 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000419; DNA; MARINER46_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-366 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-701 RA Pavlicek A. and Jurka J.; RT "MARINER46_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 295-295 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER46_CB contains 185bp-long TIRs and is flanked by TNA CC target duplications. Related to MARINER47_CB, MARINER47A_CB, CC MARINER47B_CB, and MARINER49_CB. XX SQ Sequence 701 BP; 177 A; 162 C; 152 G; 210 T; 0 other; ctagggaatg gtcagaactt acaccacgat cgagacatac cagtgggttc agtgaagaga 60 aggttgcttc ctgattccaa aacagttttc aaattttgct aaatggcccg gagagccgag 120 atatttgtgc tccaaaatcg agcgataaac catgtaaatt tcaacttttg ccccagttcc 180 ctctccccac ttccctctca caaacaccca tttcttaacc gccaccattc acctttgcaa 240 agtgtggtct ggtggccgag tggtgtgcgc gtttgtctgg caatctgctt ttgcgggttc 300 gaacccacct tcttttgaac gttttgtttt tgtagttttt ggtttttttt acttcttgcg 360 gttttttgta cattttattt caattttaaa caaaacgttc aaaagaaggt gggttcgaac 420 ccgcaaaagc agatcgccag acaaacgcgc acaccactcg gccaccagac cacgctttgc 480 acaggtgaat ggtggcggtt aagaaatggt atttgtgaga gggaactggg gcaaaagttg 540 aaatttacat ggtttatcgc tcgattttgg agcacaaata tctcggctct ccgggccatt 600 tagcaaaatt tgaaaactgt tttggaatca ggaagcaacc ttctcttcac tgaacccact 660 ggtatgtctc gatcgtggta taagttctga ccattcccta g 701 // ID MARINER44_CB repbase; DNA; CBR; 2649 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 2) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; transposase; KW mariner/Tc1 superfamily; DNA; Cb000520; MARINER44_CB. XX NM MARINER44_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 105-2226 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2649 RA Pavlicek A. and Jurka J.; RT "MARINER44_CB - a family of autonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(9), 240-240 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER44_CB contains 151bp-long TIRs and is flanked by TA CC target duplications. The internal part encodes a 501aa-long CC protein similar to bacterial mariner-like transposases. One CC similar CC sequence is found in C. elegans, no similar elements is found in CC other CC eukaryotic genomes. Nonautonomous elements listed as CC MARINER44B_CB. XX FH Key Location/Qualifiers FT CDS 659..2161 FT /product="MARINER44_CB_1p" FT /translation="MFQTELRHMRIGQSLCDIDTSIFPKTPTQKHTRNSGE FT EIMRNVSSSVGIIQEKLGSDCRFTMFSNTAKATAEMCGLSRKTVIRLTPER FT DLPQKKLLVTMGKKERCRRYASQLDFVKRVRIVAKIHSLWKEGRDVTVSDL FT WTFAKDELKFQRGRSVFLYVLRGLGFVYRQKEFNPIVSERPDIVHKRMLYL FT QLKKEWDSKNALYGSFDETWAHNGMVRRLAWMHANQGMYKKSKLMDLLSSQ FT PGPSKGRERGKRVIIAAVITQLGVLKGSELLLVSGLREEDQKQDYHADMDG FT NNFEIYYRKMIPLFAAEAAKLGRPAVLLCDNAPYHNAPLRKPPTSTSSRAD FT ITSFLTEHGVKFFPKQTKEILYDLARIFIESNGGREAFTVYKFDEYAKSHG FT VTVLRLPQYHCFFNPVELLWAQLKQHLRKIGKPEDSVELVIFRYFFPEIVF FT HLGEKPCQGVPRVFSSNFGRQTVSSHSKIGDRPSRDDGRRRYDGLRRGVRL FT ELRRR" XX SQ Sequence 2649 BP; 822 A; 546 C; 585 G; 696 T; 0 other; ttgtcggaat aaaaaaagtg ggactcggtg tttgcgtact ttgatttccg cttccccccg 60 ccgacgctcc gcccactgct tttgcaagtg cggcgttgtg ttttgcaatt gtgcggcgcc 120 acttcgggtt tattgtaatt aatgaggttt tcatttaaaa aaaacaattt atctcacaat 180 ttatagagaa aacattgaaa aaagcaacaa tgagctacaa ccggggcatt tcaaaggaaa 240 caatcttaaa aagaggtagt tatatctgga aaaatgtggg tagaaagggg gaaaaaatga 300 ttaggaagct atgttgaaag gaatacaaga ttttctgaag atgttgctca acgacagttg 360 tggactcgga gtgttggagc ccaagtaact ccaattagcc acgataagaa agtacaaaca 420 tttccgacca ctcgtgacat cagtcttcaa gctaaacctt cggacattcc tggcttcttt 480 catctgaaaa acacagcgac tgatcctacc tcaaccagca atgcaagcac ccagagtagt 540 acaattatcc gtaacaagac aacctcttct cagtgtgttt tacctcccgc caacagattc 600 aagtatctga ctgaggtata aagatcttat caacctagaa tagtaagcag tagggtgcat 660 gtttcagact gaattgaggc acatgagaat cggacaatcg ttatgtgaca tagacacttc 720 catctttcca aaaaccccca cacaaaaaca cactaggaac tctggagaag aaatcatgag 780 aaatgtgtca tcgtctgtcg gcataattca agaaaaattg ggcagtgact gtcgttttac 840 aatgttctcc aacactgcaa aggcaacagc tgaaatgtgt ggtctgagca gaaaaacagt 900 aatccgcctg actcccgaac gagacctacc gcaaaagaag cttcttgtta caatggggaa 960 aaaagaacgg tgcaggagat atgcttctca attggatttc gtcaaaagag ttcgaattgt 1020 agcaaaaatc cactctcttt ggaaagaagg tcgcgatgtt acagtatccg atctatggac 1080 atttgcgaag gatgagctca aatttcagag agggagatca gtgtttttgt atgtacttcg 1140 tggacttgga tttgtgtatc gccaaaagga attcaaccca atcgtgtcag agcgaccaga 1200 tattgtacac aaaagaatgc tgtatctcca gttgaagaaa gagtgggatt ccaaaaacgc 1260 tctatatgga tccttcgatg aaacgtgggc acacaacggc atggtgaggc gtcttgcctg 1320 gatgcatgca aatcagggga tgtacaaaaa gtcgaagttg atggatcttc tatcatccca 1380 gccaggtccg agtaagggaa gagagagagg aaagagggtc atcatcgctg ctgtcatcac 1440 acagctagga gttctcaaag gatccgagct tcttcttgtt tccggattga gagaagaaga 1500 tcagaagcaa gattatcatg ccgatatgga tggtaataac tttgagatct actaccgaaa 1560 gatgatcccg ctttttgcgg ctgaagctgc aaaacttgga agacccgcag tgttgttgtg 1620 tgataatgct ccgtatcaca atgctccact ccgcaagcct ccgacgagca cttcttcccg 1680 agctgacatc acatcttttc tcacggagca tggtgtaaag ttcttcccaa agcagacgaa 1740 ggagatcctc tacgatttgg ctcgaatctt cattgaatcc aacgggggtc gcgaggcatt 1800 cacggtctac aaattcgacg agtatgccaa gtctcatggg gttactgttt taagactccc 1860 acaatatcac tgttttttta atccagtgga attactgtgg gcgcaattga aacagcacct 1920 cagaaagatt ggcaaaccgg aagattcagt agaactagta atttttagat atttttttcc 1980 agaaattgtt ttccatttag gtgagaagcc gtgccaaggc gttcctcgag tcttttccag 2040 caacttcggc cgacaaactg tttcttcaca ctcaaaaatt ggagacagac cttcgagaga 2100 tgatggaaga agaagatatg acggattacg acgaggtgtt cgacttgaac tacgacgtcg 2160 atgaagctgg caatctctac aacatccgaa tcgatagtga tgacgaagac gcgatggtgg 2220 acgaggaaat cgaaaccatt tgcccaacag attgctccgt tagctctgat gacgacttca 2280 acgttttcag tgatactgaa gactatgact ttctagaata atgcaaatta gtattattgt 2340 tagccttttc cggttttttt tttcattttt ccagtgaatt ttatagtaat cgtttacctg 2400 taataaatta ttgagttttg agacaacaag aagtaaaaaa aatcattttc tctaaaaaat 2460 tgtgacataa attgcaattt ttctatgaaa atctcgttaa aacctcatta attacaataa 2520 acccgaagtg gcgccgcaca attgcaaaac acaacgccgc acttgcaaaa gcagtgggcg 2580 gagcgtcggc ggggggaagc ggaaatcaaa gtacgcaaac accgagtccc acttttttta 2640 ttccgacaa 2649 // ID HAT17_CB repbase; DNA; CBR; 225 BP. XX AC . XX DT 31-JUL-2005 (Rel. 10.07, Created) DT 04-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE HAT17_CB - a family of nonautonomous hAT-like transposons. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000365; HAT17_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 20-208 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-225 RA Pavlicek A. and Jurka J.; RT "HAT17_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 5(7), 180-180 (2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~90% identical to the consensus. HAT17_CB CC has a palindromic structure and is flanked by 8bp target CC duplications. A central segment is distantly related to HAT14_CB. XX SQ Sequence 225 BP; 78 A; 26 C; 45 G; 76 T; 0 other; catacatgag ggatttttgt aaatttgggg gttttttgag gtcgcgaaaa tttttcgaat 60 tttcgaattt tgataaatta gctcgcgatt tggtgttttt agggtaaaac aagtacgaga 120 aacacaatgg tgataaaatg cgagctgaaa aatttttagt tttcgaaata tttaggtcgc 180 aatttgaaaa aaaaacccca aaatttacaa aatacctcat gtatg 225 // ID MARINER6_CB repbase; DNA; CBR; 1260 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000029; DNA; KW MARINER6_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1260 RA Pavlicek A. and Jurka J.; RT "MARINER6_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 87% identical to the consensus. CC MARINER4_CB contains 35bp-long TIRs and is flanked by TA target CC site CC duplications. The transposase reading frame is partially CC preserved, CC but the family appears to be nonautonomous. Related to the active CC MARINER4_CB subfamily. XX SQ Sequence 1260 BP; 389 A; 279 C; 240 G; 352 T; 0 other; ttaggttgat aagaaagttt ctttcttttt tggcaaaatt tttgatcaaa tttttctcaa 60 agcggagggg gctagatcaa tgaaagtaac gtccatgagc atcgatagtt gtctggcaac 120 gctccggtaa tttcttgatt ccatcggccc agaacgagga gggctgcgat tgaaaaagtg 180 ggtcaactcc ttttttgtgt catcttttca attgaagtat tttctatcaa gatgacgttt 240 aagagcccca aacgaccatt tatccgaaag ggcaaggtcc ggagaatacg atgagtgcaa 300 aagaatagtt cagccaaacg acatgaattt ttggctgatc cctctagtca caggcgatct 360 cgcattgtcg cgctggaagc aaactttggt tttttctcct cgttttgatt cgactgccaa 420 attcaatttc tctaattagg aactatacaa ggcggcagtt atagtggtac cttcatctaa 480 aagttcccag tctccattcc tttgacagac catcaaactc atagcatccc cattttcacg 540 ggaaatttag gttccgggac gtccagagct agctgttctt tgtcaatcaa ctgacccttc 600 cgcacattga tagagtaact tacccactta tcatctacgg taattagatc atccacccaa 660 ctgaacgtgc gaagaaatga taggagaaac atgctcatgt ctacatggcg atccatatcg 720 tagtccttca aaacatgggg tacgaatcga cccagttttt gactttgcca agagacttca 780 atccgttcac aatacttggt tgactaacgg acaatgcctt tgacatttta caagtggttt 840 gaaatggatc cgcctccacg gcttttagca attgatcgag atccaactca ctaggccgtt 900 ggcatctttc aaactgaact ctcctgtgcg gaatttttcg aaccaaaggc aaattgtagg 960 cgatgacgga acatgtccct tatatacatc cacaattttt cttgcgaata ccaggtgttt 1020 gaagaccaaa taaaaataaa aatataatca tgttgcgaat gtgcagtcgg ataaggacca 1080 aaagaatcgt catttctcca acacgaagtg agataaaaat ttgaaaatct acgatctaat 1140 agacactgaa cacagctctc taacaaaaaa aaatttggcc cgctaaacca cttggagaac 1200 cagaaatcga tcctcaaaaa caaccctgcc aaaaagaaag aaactttctt atcaacctaa 1260 // ID MARINER61_CB repbase; DNA; CBR; 442 BP. XX AC . XX DT 07-JAN-2005 (Rel. 10, Created) DT 07-JAN-2005 (Rel. 10, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000409; KW Cb000410; DNA; MARINER61_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 81-363 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-442 RA Pavlicek A. and Jurka J.; RT "MARINER61_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(12), 332-332 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 93% identical to the consensus. CC MARINER61_CB contains 25bp-long TIRs and is flanked by TA target CC duplications. MARINER61_CB is related to MARINER23_CB. XX SQ Sequence 442 BP; 157 A; 77 C; 75 G; 133 T; 0 other; ccgtatttcc tctaatagaa gcccacctct aatagaagcc caccccgcga ggtgcttcga 60 aaaatagaag cccaccctct aatagaagcc catgggcttc tattagagaa aatacggtaa 120 ttaaaaattc cagaattttt ggaactgtga ttttagaact cgaaaatttc tcaatttctg 180 atctacagaa ttcctgaatt ttgaattttg agattctgga atctcagaat ttcataaatt 240 cggaattttg gagtttagaa ttgcagaatg aaaacttcga atttaaaaaa acaccgaatt 300 tcagaattct taacttccga attgtcaaat ttctgatttt ttgaacaaaa tttttttgaa 360 aattaatcat tgaaaaatag aagcccaccg agagagaggt tgaaaaatag aagcccatgg 420 gcttctatta gaggaaatac gg 442 // ID DNA2-9_CB repbase; DNA; CBR; 1231 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000084; KW DNA; DNA2-9_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1231 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1231 RA Pavlicek A. and Jurka J.; RT "DNA2-9_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 95% identical to the consensus. CC DNA2-9_CB contains ~30bp imperfect TIRs and is flanked by 2bp CC target duplications. XX SQ Sequence 1231 BP; 402 A; 226 C; 175 G; 428 T; 0 other; ctcaggtaaa tcggaaaacc tttctgagct acatttgagc aattctgaaa ccttttcaag 60 caaaaagtcc acgattaaac tttttcaagc cacaatcaaa cttttcaaac ttttctaagc 120 aacttgtaaa ctttatccag ctgcgctcga aactgaaact ttttaaagcc acagttaaac 180 ctttttcagt catatttaaa cttttcaaac ctttttgagc cttattaaaa cttttctggc 240 ttttcgaaag atttattctg ttttttaaaa attattttac ctaattttgt tttatttttt 300 atcatctttt aatttttttt tttcttttcc atatgtttga aagtcgtaaa atgcttattt 360 gagagaagat ccaaatcaca atctcctgga atcataatct attgctcaag aactatcatc 420 gaaaaaacgt catgatgaat cattgaatga gaattcaaac ctgccgtcag aacggagtaa 480 tttagcctac ggttcgtcag ttttagtaaa aaatgaattt acctatcata atttcagaca 540 aggagaaact tcaaacttcc gaagcgacaa tttggaaaat cgtgttacac caatatgagg 600 aagactagat catgatcgcg atcacatgaa cccgctccaa agacactatc gaaactacgt 660 atgaatcagg agagaacgcc ttccataaca gtgagttgta gctcttaata tctatttcta 720 aaaattttaa atatttccag gaggatatga tattgggctg ataacaacgg ggatgcgcta 780 cgatctgagg ttcaaagatg tttcgagatc gagattccac ttcagtttaa attttcttgt 840 ttttttttgt taatttcttt ttctctaatg aatgtatttt ctgaaaatcc gtcttcaaaa 900 gaatcaatag tttaaacctt tagtagaaac gataaaacct ttttagcagt aaaacaactt 960 ttttaagcaa cgaataaacc tttttaagta tcaaaaaaac ttttctaagc ccttctctaa 1020 ctttttcaag caacgagtaa acttttttaa gcaacagtaa aactattatt agcactttca 1080 aactttttcg agcaatggat aaacttttct aagcaacaac gaaactattc taagcccttt 1140 ataaactttt tcagccgtgg ctaatcgggc acctttttta gtttaatcgt ggcttgttta 1200 tggctcagaa aggttttccg aactacctga g 1231 // ID DNA8-13_CB repbase; DNA; CBR; 1149 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000206; KW DNA; DNA8-13_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1147 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1149 RA Pavlicek A. and Jurka J.; RT "DNA8-13_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(5), 216-216 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 94% identical to the consensus. DNA8-13_CB CC contains ~190bp imperfect repeats and is flanked by 8bp target CC duplications. XX SQ Sequence 1149 BP; 357 A; 216 C; 222 G; 354 T; 0 other; gggagtacga tgaattcgaa ctttcgcgaa atcgaactgt cccgaaatcg aactcgttcg 60 aattagaact gtcccttttt cgaacacgcc cagaacagaa caagaacgga atcgaactgt 120 tccaactcga actgattcgg tgtcgaactg tcccgaattg gaactctgtt agcaacagag 180 cgcgcttgca ttacctttga aaatttcaag ttttctccag aaaaaaatca tttttacaac 240 aaaaaaagca tttttatttg aatacagtga ggaaaaaaca atttgaaaat agaaaatatg 300 tgtttaaaaa agaaagaatt catgactttt aaacagaatg ggcgtcggag atggtgtcta 360 ataaattaag accagtcaaa ggcataattg gcgggattgg ctgatttatt agcgtcttga 420 tgagtctccc gtccttcaat gcgttggtga gttttctgtt tcgattcacc tgaagtgtag 480 taaaaaatca atttaggtgt tcaagagtag aaacagacct ggaaattcgg atttagtttc 540 aactcattcc aatccatctt tgtatgctaa cttcactact aacttcactt ctgacaaaat 600 cctcgtcgtg tctcacatgt tgatttttaa cagtgaacgt gttgttcatt ctgtcgaaat 660 gataagctgc atcacatcga gctcgtcttt ctctggaaaa aatattgttt tatagtaatg 720 ctgcaatttt ttaccgctcg acacagtaaa aaagctctgt tccatttttg ttcatttttt 780 tgaaacgcat tgcatatcct tgaacttgaa cgatcggctt gtttttacga ggagccattt 840 tctgtaaagt ttatattctc gaaacgggaa gagaaattcg caaaatatcc aaaataagtg 900 aaaaaagtta ttttctggag aaaacatgca aaatttgttg acaaaaataa ttttaaaaaa 960 gcaagcgcgc cctgttgcta acagagttcc aatccgggac agttcgacac cgcacagttc 1020 gaatttatag cagttcgatt ccgttcttgt tctgttctgg gcgtgttcga aaaagggaca 1080 gttctaattc gaacgagttc gatttcggga cagttcgatt tcgcgaaagt tcgaattcat 1140 cgtactccc 1149 // ID piggyBac6_CB repbase; DNA; CBR; 478 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW piggyBac; DNA transposon; Transposable Element; Cb000199; DNA; KW piggyBac superfamily; piggyBac6_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-478 RA Pavlicek A. and Jurka J.; RT "piggyBac6_CB - a family of nonautonomous piggyBac-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 94% identical to the consensus. CC Flanked by TTAA target site duplications, 18bp-long imperfect CC TIRs. XX SQ Sequence 478 BP; 138 A; 112 C; 104 G; 124 T; 0 other; aggaggccag acatgaaaat tttcaaaatt ctagtttttt gatatatgac acagtacagt 60 cagaaaataa caatggacac caaaccataa ctccctgtta ctgtacaagc gagaacgcga 120 ccgttcttcc aagcggcggc ccactcctcg tttcataatc gttttagcgg cagaagacga 180 caagcgccgt gtggtgtaga ggtgagcgcg cttgtctatc agtcgcgcat cgcgggttcg 240 attcccatct gtccgttttc gttttttttt tctgttttca tgcggcgaca tcatagaatg 300 accgaataac gagaaaaagt cgggaataat tgccaaacag tgaagaaatc tagtgtatac 360 taaaaaaaaa ataaatgctc gtcaagtagc gcgcattggg tcgcaatcgc acgattttcc 420 gtcagaatac atgatctcgc cccaagaaaa ccccgtagac tttcgtgtct ggcctcct 478 // ID HAT18_CB repbase; DNA; CBR; 658 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000013; HAT18_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 16-657 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-658 RA Pavlicek A. and Jurka J.; RT "HAT18_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 6(1), 7-7 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 88% identical to the consensus. HAT18_CB CC is flanked by 8bp-long TSDs and has ~122nt-long TIRs. XX SQ Sequence 658 BP; 222 A; 110 C; 115 G; 211 T; 0 other; ggctcttttc tagtttagag gtcccaaaaa agaatagagg tcccaaaaaa aattagaggt 60 cccaaaaaaa aatagaggtc ccaaaataaa attagaggtc ccaaaaaaat tagaggtccc 120 aaaaaagttt agtggtccca agaaaaaata gtggtccaaa acttaaaaat gcacagatac 180 cggaataatg tactaaaatt tgaattgtgt aagaatttaa agttttgagg tcttatagca 240 aaataattgt tgatgatata ttttatactt ctaataggct taggaatgca tattttctga 300 caattatcta agcctgagag acagcataat cacggagtga ttactgtatt gcccaaattt 360 tcctcatatg taaattgggg ttcatcggca agatgcgaga gaattggagc taaaattgtt 420 aggagtagtc atgtcatcct ataagaccct aaaactcaaa ctactcgcac agttcaaata 480 ctagtacatt attccaacat ctgcgcgttt ttcgtatttt ggacctctat tttttcttgg 540 gacctctaaa cttttttggg acctctaatt ttttttggga cctctatttt attttgggac 600 ctctaatttt ttttcggacc tctaaatttt tttgggacct ctaaactaga aaagagcc 658 // ID DNA2-21_CB repbase; DNA; CBR; 1115 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000222; KW DNA; DNA2-21_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 26-1115 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1115 RA Pavlicek A. and Jurka J.; RT "DNA2-21_CB - a family of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (24-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 94% identical to the consensus. DNA2-21_CB CC contains 13bp-long TIRs and is flanked by 2bp target CC duplications. XX SQ Sequence 1115 BP; 330 A; 227 C; 244 G; 314 T; 0 other; ctcagcaaat tttcggcacg ccagggggca cagaggggca caggatccgc atccaaacgg 60 caccgtgtgc cgcgttgaaa gtgcccttgg aacaccgcac ccgtgcccct cctagcaagc 120 atgtggcgtg ccgctaccgt gccgctgccg tgccctttct tgaaccacct gcgcatatcg 180 tctctatcca tagagtttcg aaaatgttgc gaaaatagct tgtcattcat tttcataaat 240 ttttgtactt ttcaccgttt tatggcattt ggttttgttt ttctaggctt tcaggtggaa 300 aatcatgaaa tatatttctg tttagttttc agacattggc tgtaccagat gtcccgttgg 360 aagagacacc gaaggaaaat aggtgagttg agagatgttc aagtaataat gatgtcggaa 420 atcttttcag ttataaaaga cgagaaggga agtcgtcaaa ccgtggggga tactgaagaa 480 gaagaagata ttttacgacc agcaacgatg aatattccaa attaaatatg taagtgggcg 540 agatgtgaaa aactgaacta ttttgaaatg acagtgttca aaaaaaaatg ttcgaaaggt 600 taatgttaat ccctatgttt tacagttccg ctgatcttcg gtgaaaacgt gccagacaac 660 ttccgatgga ttttcgggaa gacaattcgt ccaaagaaat gtgagttttc atccaattag 720 ttatgtaaat aatctttaaa gttctttcag aaacaccctg ccaagcccaa cgccaataaa 780 gctggagaag aggagtagga aaggtacttt catcgaaatt cgacatcttc gacacaatct 840 tctctacaga tttaaatgat cgttttttct tttttttttg ttactctttt tttttgaatt 900 tctaatcgaa taaactgtta aatttaaaga aaatattgaa attaattgag ccaattttgg 960 ggaaagaatt tcaaataacg gtcacacatg agcacggata cggcacggca acggcacgca 1020 aaatgcatgc gtgccccgac cccccgggca cgattaccgc gttgcagcgg caccggtgcc 1080 ccaagtagcg gcacatgtgc caaaaatttg ctgag 1115 // ID DNA2-25_CB repbase; DNA; CBR; 986 BP. XX AC . XX DT 24-MAY-2006 (Rel. 11.05, Created) DT 24-MAY-2006 (Rel. 11.05, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000228; KW DNA; DNA2-25_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 492-986 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-986 RA Pavlicek A. and Jurka J.; RT "DNA2-25_CB - a family of nonautonomous DNA transposons."; RL Repbase Reports 6(5), 211-211 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 93% identical to the consensus. DNA2-25_CB CC contains 28bp-long TIRs and is flanked by 2bp target CC duplications. XX SQ Sequence 986 BP; 272 A; 203 C; 193 G; 318 T; 0 other; ctcagcaaaa aaccgcaaca gttgtgcagc atttgcacct ctaacaacag ttccgacaca 60 ctagcgctac agttatgcag caagttgagc aaattgttgg agtgcaacaa tgatacagca 120 ctgaaccagc atctgtatac cgtacaccct cgctcagctg tagaggagtt cgcgcccgca 180 gcagttgcac agcatctgtg cgttctccta caggtatgag ctgtgcagca tcttagcagc 240 acaacgacac tccgaatccc atactgcgtc cggtttagca gaattttatt tttgattttc 300 gaaattattt tcggtcctat ttcgattcgt tttgatgttt ttgatagcgt tctcgtttat 360 tagtaagcta ttttatgatt cagagcttcg agcaaatgcg ccgaattcgc cgtgcgacaa 420 ctttttcgac ttggagtgaa cgaggtaaat tttgtaatat tttttttcaa ttgtaataga 480 aatagtgttc ccctgattcg aaagttgact gaaagcgaag cagattcatg gttagaagtc 540 ggacgaatgt tttttctttt cttatgtaat ttcttacaaa aaattttgta gtctcctaca 600 ttttttgaat tagctaaatt tcagattgcg ttccatctat gaagactacg acacacgccc 660 atcaacgaaa tttaccaaat ttttgaattg tgctcgacag gactcctcga aaatatatta 720 atttctaatt ttttgttata tttttaaatg taaataattg ttgtatcaat aaatattgtg 780 atattaaatt gtaccaaagt cgttttttat cagataaaaa tagtaaaaag cgaggatccg 840 cgcggccgcc gctaggtacg atacagcact tgcgcagcat ctgtaacact tttcccctac 900 agttccacag catttgcgca acagtttcag ggtcgacggg cgcctgttgc gcaagtgatg 960 cacaactgtt gcggtttttt gctgag 986 // ID MARINER30_CB repbase; DNA; CBR; 459 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000021; DNA; KW MARINER30_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-459 RA Pavlicek A. and Jurka J.; RT "MARINER30_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 88% identical to the consensus. CC MARINER30_CB is flanked by TA target site duplications, 25nt CC TIRs. CC Similar to MARINER29_CB. XX SQ Sequence 459 BP; 122 A; 80 C; 97 G; 160 T; 0 other; ccgtaaaaac tctattagat agccatggca ctctattgtt cggaggtggt ctggggtggc 60 actgtattag ggggtggcat tcaattagag gctggcactt tattgttcgg agccaatttc 120 tactgaaact catcacaaaa gtactcgatt ttcaactttt tcataaaatg actttcgagg 180 ttttcttgat ttttctactt ctttttttag agactttcgg agtctgatat tatcctgaaa 240 catttttgac aaatacagta cctcttttaa gcttgaaaaa agctagaaaa ccagaaaatg 300 attttttgtg ttattcttca acttttacca cagtgacatc aaatccgcag tggcattata 360 ttaggggctg gcactctatt gttcggaggt gctctaggat ggcactatat tagaggctgg 420 cattcaatta ggggtggcta tctaatagag tttttacgg 459 // ID HELITRON13_CB repbase; DNA; CBR; 2067 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000372; KW Cb000373; DNA; HELITRON class; HELITRON13_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2067 RA Pavlicek A. and Jurka J.; RT "HELITRON13_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 266-266 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. CC HELITRON13_CB is flanked by TC-CTGG termini and contains a CC palindrome sequence in positions 1882-1903. HELITRON13_CB CC shares first ~183 bp with HELITRON12_CB. XX SQ Sequence 2067 BP; 675 A; 361 C; 382 G; 649 T; 0 other; tcattactaa taacattcac caaattccgt atgtcaggat gtatgtagcg tgtctgttca 60 cccattcaaa gttaaccgat tgagctgaaa cctagacagg cgaatcggaa atttttatta 120 gtttttgccc gaccctttct attttcgaaa ttttgattct gaagtcttct ggagacgttc 180 ctttgtttca ccacagtaaa gcgtggtggg cagagagggc gatggtggag ggcgagagag 240 aaaaaggggg aggaaatccc acacacgtgt acgccatttc tccctccctt ccagtggtga 300 ccgagtggtg tagtggttag cgcactctgc ttttgcccgc gctatgcggg ttcgagtccg 360 atcggtgaca actttttttt ggttttttgt agagagttca gaagtgaata tgaaaatgtc 420 tgactgtttt taatcagttt gaatgaaacc ctagcaaaga ttttccccgt ttcattagtt 480 tcaagtcgaa agtagaaatt tgaataattt ttgtgttatc agcaaatttg ggataacaat 540 ttggtagata aatcggtaaa ttttgcattt tcttttttca gaggcaagtt ccaacatccc 600 aaagtgaata gagggcggcg gttcgtaaaa gtggcaaaaa tgattaagag tttgcattca 660 ccgatattaa actttagaat tttagagtgt ttaaatttcc aagttttgag tcttctaatt 720 caaatttctt gagtttcgag atttccggat cgtcagaaaa aatcataaag ggagaaatac 780 aggaacttcg aactataaga actctcaaaa tctccaacat aggaactctc tgaagttgaa 840 aatcagataa gaactgaagt tttcgaaata aaggtttcaa actgtggacg ttttgaatcc 900 aaatctctgg ctttacactt cctaaattta ccaacttctc gaagttcaga aaattaaaca 960 ctcaaatatt caaaactcca gaagctagag aatttgaaaa ctcggaaact tgaaaattga 1020 acaaatatgt atgaattttt gaaattctga gttcgaaaat aaaagatttc agaaactcgg 1080 aaattttgaa attttcatcc gaggttcaaa atcgaaaaag aactttcgga ttcgcatatt 1140 tctgaacttt caaatataaa actttccaaa atttcagttt atagatacct gggtttccgt 1200 atttctgact tccagagttt tcaaaatttt gagttccgag atttccaata aaagaggctc 1260 agcccctgta aagtgtaaac cgacttttct atttacagtt ttaatttcag agttagactc 1320 agaattttga aatttaaaaa acctttgaca agatcttcaa aattgaagtt ttcgaacttc 1380 ggaatttcca acagaagttc tgtaaatttt gaatactgta cttcctctaa tacatagaaa 1440 cccacccgca aagtgttttg aaaaatagaa gaccgccctc taatacatag aagcccatgg 1500 gcttcaacta gagaaaatac ggtaattcaa aataccagaa tttttgaaac tgagatttta 1560 gaactcgaaa gtttctcaat tcctgaactt tctaatttct aaatttcgga atttcggaat 1620 ttctgatttt tagaatttca gaactttttc ccggaaattc agaattcctg aatttcaaat 1680 tttgagatcg cgggatctca gaatcgcata aattcagaat tttggaattt agaagtgcag 1740 aatgaaagtt tcgaattttt acactgaatt tcagaattct taacttccga attgccaaat 1800 ttctgatttt ttgaaaatat attgctgaaa aacagaagcc gaccctctaa tggaagtcca 1860 ccctgaaaaa gaagttgaaa aatagaagtc catggacttc tatcagagga aatacggtat 1920 cttaaaattt ctaattccta atacactgaa tttcacaatt tccaatttcg aggtccagaa 1980 taaacgtgta gaaacgtttt tataagatta cgggtactgt aaccggaggc caggaggttc 2040 agccccgaag gggcgcaaac cgactgg 2067 // ID HAT3_CB repbase; DNA; CBR; 488 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Cb000178; DNA; HAT3_CB; KW hAT superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-488 RA Pavlicek A. and Jurka J.; RT "HAT3_CB - a family of nonautonomous hAT-like transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. HAT3_CB is ~80% identical to HAT1_CB. CC Contains 16bp-long TIRs terminated by CA-TG bases. Flanked by CC 8bp target duplications. XX SQ Sequence 488 BP; 235 A; 41 C; 102 G; 110 T; 0 other; cagacatgag cggaataaaa tttttgaaaa tccggaagaa ggaataagga ataaggaata 60 aaaattgaaa atcaggaagg aataaggaat aaggaataaa aatttaaaaa tccggaagaa 120 ggaataagga ataaggaata aaaaaaacac ccggaataag gaagaaggaa taaggaatac 180 ggaacaaaat ttcgaaaaaa gccgaatttt ttttggaaat tttttgataa aacatataaa 240 agaggaattt aggcttcatt aaacgacatt ttaagtggta gtttaggttt agaaagcgtt 300 ttttctaatt ttaaaaaatt tcaaatttta aattgttcga attatccgga agaatgagaa 360 aaaatcagga ataaggaata aggaataagg aataaaaatt aaaaaacccg gaagaaggaa 420 taaggaataa ggaatagaaa aaacacccgg aagaaggaat aaggaataag gaattccgct 480 catgtctg 488 // ID MARINER19_CB repbase; DNA; CBR; 1278 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000180; DNA; KW MARINER19_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1278 RA Pavlicek A. and Jurka J.; RT "MARINER19_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 94% identical to the consensus. CC Distantly related to MARINER16_CB. MARINER19_CB contains CC 28bp-long TIRs and is flanked by TA target duplications. XX SQ Sequence 1278 BP; 388 A; 259 C; 257 G; 374 T; 0 other; cagggtggcc gataatgata ggacgtttct aaacgtctcc catttttcag aaaaacacgg 60 ttttttaact gtaataactt tatcaaaata ttcaaaatat gtaagaattt tagttttata 120 acaagtagtc atgattagaa ccacgagctt tgacggaagc ctccaaacgc atgataaaaa 180 aatttggctg tgcggcgact gtagttgacg tcaaaatcgc cccagaactt ttgaaatgga 240 ctttacagaa agtccaaaaa actgtaggag attcctgaga tcttgttctt caaaagtctc 300 catacattaa agtccatcgg actgaaatcc gtggagttag agggccccca atcgtagccg 360 agttttctag gaaaatgagc gtctaagacc gcaattgtgg atttcgatcc acaagacggt 420 gctgagtctt acagatggtt ttaaaaatgt ccaacaaact gctgagtggc ccaggacaac 480 aaattatgca tcaaaactgt catttggtag acctgcgagc cgagctgatt ttcaccaaaa 540 accaaaaaat tagtactggt tgccgtgatt ctatcccaaa ctttgaaatt tttacggaaa 600 ggcaatttga agataaaata cgttcaggag attcgttgtc atcttttggt aacaattgtc 660 cctgatcccg acggttcgga agagtttcat cagtgaaact ctttacgtca ccccagatct 720 cgtctgacac ccgccgcagg tggaggtgtg aaaaaagttt tttgcatttt tcgcgtctgc 780 aggccccgga tgtataagaa aggaacagtt tacggtagat acggtaactg caagtgttta 840 aatcctattt gacgattttt tgaaccctgg accttgcaat accaaggtta aaacccattt 900 ttttgctcaa tttgacgttt gatgatcccc cgagtctggt gaatgttcaa agttaatggt 960 ggtcttaatt tttgttttaa taggttcctc tgatcctttt ggatattttc aaaaacattt 1020 cggacacttg atgaagaaac tccaagtctt ctagccacat caacacgtgc accccatctc 1080 gagaaaagtc gcgatcatgg gttggtgtgg agaagtcttc ataattctga acaaaaaaca 1140 aaatgatacc aaatgatata aatcactgct tatagagggt ccctactttc tattagtttc 1200 gaaagttttc aaaattattc tttggcgccg ggccaaggag ctctcaaaaa aaacgtccta 1260 tcattatcgg ccaccctg 1278 // ID MuDR-12B_CB repbase; DNA; CBR; 935 BP. XX AC . XX DT 02-MAY-2005 (Rel. 10.04, Created) DT 03-MAY-2005 (Rel. 10.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW Cb000216; MuDR-12A_CB; MuDR-12B_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 593-795 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-935 RA Pavlicek A. and Jurka J.; RT "MuDR-12B_CB - a subfamily of nonautonomous MuDR-like RT transposons."; RL Direct Submission to Repbase Update (28-APR-2005). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 97% identical to the consensus. CC MuDR-12B_CB contains 12 bp TIRs and is flanked by 8 bp target CC duplications. Shares 170 bp-long segment 90% identical to CC MuDR-12A_CB. Distantly similar to MUDR5B_CB. XX SQ Sequence 935 BP; 299 A; 169 C; 185 G; 282 T; 0 other; catacttgtg aagggccggg ccgaaacacg aatttcaccg gcccggaagt ttaccgcgaa 60 cttcaaaatc ttgagcaaaa agttgaatca ttgtttcgaa aaaaggtatt cagtgttttt 120 tttcttcgag ttatttttca atacattcta aaaatcaatg aactgggttt taaaacctaa 180 attaaacatt aaaatcaaaa agaacaatca aaagacaatg agaagtgaac attttctgcc 240 gtaatttttg aaaattcaga aatattgaga ttctgaagtt ctgaaattct gaggttctga 300 aattctgaga ttctgaaatt cggaagttct cagattctca gtttctgaag ttccgaaatt 360 ctaagaattc tgagattttc aagctctgaa atgcaggaat gcagaaactc ctttaaaaaa 420 ctgtaccccc gaatcacaag cgttgtaccc ctaaatgaaa tgagttgtac cccagaatca 480 ttggtagttt tcacccccga atttttgtac ctacgaattt tgtaccctcg aatcaccaat 540 tttgtacccc taaatcagtt gtaccccctt gtacccccca aatttttcgc caactatagg 600 cttaggccga aagtcttgtt tcttttggta gtatgggaga ctctgtggta aaaagtagta 660 taagagacct tggtagtaaa agagacttgg tagtatgaga gacacattga aaataagtag 720 tataagagac agtggtagta aaagagactc ggtagtataa gagaaaggta gtataagaga 780 tggttgtata agagaatttg ccccgaaatt ccgcattcgc gttgtttatc gctttgacaa 840 aaatggcggc tgtttaaatt catttttcaa aaattttgtt ttttttctcc gggccgccgg 900 gccgaaccgg gccgggccga aatttcacaa gtatg 935 // ID HELITRON1_CB repbase; DNA; CBR; 216 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000075; DNA; KW HELITRON class; HELITRON1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-216 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-216 RA Pavlicek A. and Jurka J.; RT "HELITRON1_CB - a family of nonautonomous HELITRON elements."; RL Repbase Reports 4(10), 268-268 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC HELITRON1_CB is flanked by TC-CTGG termini and contains an CC imperfect palindrome in positions ~160-205. XX SQ Sequence 216 BP; 71 A; 40 C; 51 G; 54 T; 0 other; tcattcttat aataaataaa tgaagttgcg tctctttctt tctctgtcag tttgtccgca 60 catttttgaa aagcttgaaa attaaatata aattgacgtg accttttaaa aaagagagag 120 gagcgaagcg acgaacagta aaagaaatag gttaaatcgc gccgaaggcg caccagccag 180 ctgtttgaag cgccggaggc gcggcaaaca ggctgg 216 // ID DNA8-9_CB repbase; DNA; CBR; 696 BP. XX AC . XX DT 30-APR-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000138; KW DNA; DNA8-9_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 432-514 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-696 RA Pavlicek A. and Jurka J.; RT "DNA8-9_CB - a family of DNA transposons."; RL Repbase Reports 6(4), 171-171 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~95% identical to the consensus. CC DNA8-9_CB contains 26bp-long TIRs and is flanked by 8 bp TSDs. XX SQ Sequence 696 BP; 209 A; 140 C; 140 G; 207 T; 0 other; ggctcctgga cgtttcagaa cccgacgttt cggaaccacg acgtttcaga acccgacagt 60 tcagaacccg acagttcaga acccgacgtt tcagaacccg acgtttcaga acttttctgc 120 atttttgtat agtggttttt gcgcaccaga tgagcattgc tcatttcaat tttgtgtttt 180 tctgcttttt tgttcattct catctaccgt actccaaata atgataggtt cacactgggt 240 atctctcaaa aaatcgaaaa aattgaactt ttcaaaaacg atgtcattaa taaaagtatg 300 caataatttt tccggcgaat aaaactttta ttcgccggaa aaattattga atacttttat 360 taatgacatc gttcttgaaa agttcaattt tttcgatttt ttgagagata cccagtgtga 420 acctatcatt atttggagta cggtagatga gaatgaacaa aaaagcagaa aaacacaaaa 480 ttgaaatgag caatgctcat ctggtgcgca aaaaccacta tacaaaaatg cagaaaagtt 540 ctgaaacgtc gggttctgaa acgtcgggtt ctgaaacgtc gggttctgaa acgtccagga 600 gcccttgggt ttggaacagt cgctttcaga attgtgggtt ctgaaacgtc gtccggttcc 660 gaaaccatta gtcgggttct gaaacgtcca ggagcc 696 // ID DNA8-2_CB repbase; DNA; CBR; 962 BP. XX AC . XX DT 07-MAR-2006 (Rel. 11.03, Created) DT 07-MAR-2006 (Rel. 11.03, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000200; KW DNA8-2_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-345 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-962 RA Pavlicek A. and Jurka J.; RT "DNA8-2_CB - a family of DNA transposons."; RL Repbase Reports 6(3), 117-117 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. DNA8-2_CB forms imperfect palindromes flanked by 8 bp CC target site duplications. Similar to DNA8-1_CB and DNA8-3_CB. XX SQ Sequence 962 BP; 317 A; 178 C; 165 G; 302 T; 0 other; cagtgtgcct tatcgacaaa tgatttgtcg acaaacgccc ttttcgacaa atttatcgac 60 aaatttaccg gtaaatttat cggaaaatta ccgacaaatt gtcgataaaa acaacattta 120 tcgacaattt tttgtcgata aaaatgctgt ttgtcgacaa tttatcgaca aatttatcga 180 caaattgtcg acaaaaattg ctattaaccg ccggaattac ttgtaaaaaa tcgtatcgtt 240 accatttttt cctaggacgt ctagaatgat ggaagaactt acccaggcaa actttatagg 300 ctatctggct tggtggccca actttcacaa catgaatttt ctaggccacg attcttttta 360 gcctagaaat gatctgatgt tcacctggtg tgtttttagg tcattttaac atggtggcct 420 aactttcgcg cgttgagttt tctaggccac catgtaaaaa tggcctagaa aacataccag 480 atgaatatca atatctgacc atttctaggc caaaaaggtt ggtggcctag aaaactcata 540 ttgcaaaagt taggccacca tgttaaaatg gcttaaaaac gcaccatgtt aacatcagat 600 cattttcagg tcaaaaagtt tggtggccta gaaaattcat gttggaaaaa ttaggccacc 660 aggtcagatg gcctaaaaaa aagatgagat acgatttttt acaagtaatt ccggcggtta 720 atagcaattt ttgtcgataa tttgtcgaca aatgccccct tcgacaaatt tatcgacacg 780 acaaatttat cgacaatttg tcaacaaaat tttgttcgat aaattacttt cgacaaattt 840 accgataatt tgtcgacaat ttatcgacaa aattttatcg ttttttatcg acaaatttat 900 cgataatttg tcaggtaaat ttgtcgacaa aatcggaaaa tctttgtcga taaggcacac 960 tg 962 // ID HAT19_CB repbase; DNA; CBR; 440 BP. XX AC . XX DT 06-JAN-2006 (Rel. 11.01, Created) DT 06-JAN-2006 (Rel. 11.01, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW Cb000100; HAT19_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 35-437 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The genome sequence of Caenorhabditis briggsae: a platform for RT comparative genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-440 RA Pavlicek A. and Jurka J.; RT "HAT19_CB - a family of nonautonomous hAT-like transposons."; RL Repbase Reports 6(1), 8-8 (2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are ~85% identical to the consensus. Contains CC 15bp-long TIRs, flanked by 8bp-long target duplications. Related CC to HAT13_CB. XX SQ Sequence 440 BP; 107 A; 88 C; 80 G; 165 T; 0 other; ccagagatgt ccggattccg gattccgttt ttttttctga ttccggattc cgtgaaaaat 60 atttttgtcc ggattccgta ttccggattc cggaaaattt tcatttgtcc ggattccgga 120 ttccgagaaa attttttatt ccggatttta aacatatttg ttaatttgca agaattctct 180 gacttttttg aacttccgcg actaaaaatg caaaaatata gcacgatatg tgttttttag 240 aacttttctg cccatttgga gaactcaaaa ttccggattc cgtattccgt attccggatt 300 ccgggaaaat ttttttcatt ccggattccg gattccggat tccgggaaat ttttatttgt 360 cattccggat tccgagaaaa ttattttatt ccggattccg gattccgttt ctcaaaaaag 420 tcattccgga catctctggt 440 // ID MARINER47A_CB repbase; DNA; CBR; 1083 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000028; Cb000211; DNA; MARINER47A_CB; MARINER47_CB; KW mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 220-1077 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1083 RA Pavlicek A. and Jurka J.; RT "MARINER47_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (NOV-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble CC genome annotation. Copies are 95% identical to the consensus. CC MARINER47A_CB contains 50bp-long TIRs (~145bp imperfect) CC and is flanked by TNA target duplications from the C|TNA|G CC target motif. MARINER47A_CB is a subfamily of MARINER47_CB. XX SQ Sequence 1083 BP; 323 A; 202 C; 196 G; 362 T; 0 other; caagggaagt gttttcagac gggggttgag aatttgctca aaattttagt acttatagtt 60 tgagactccc tctacacgat gtcagaaata tctcgtcccc ggattcacca ggaagcttaa 120 aatcttcgtc tgaaattttt ataccgattt cgcgctctcc ctctctcctc tatccccctc 180 cctcctctac gccctccgcg ccagaggaaa atgtcggctg tgtggtgttg tggtaagagg 240 gtgactcatt aggagtgaat atgctggttc gaaccccgct gtggtaaaac tttttttgct 300 tttttcgaaa cgaatttttg atttccagtt tggccctcta gacactttat gatacaattt 360 gatgaatttt caaaattttc aaagtagaaa gaagatttta tgagaacttg atgaaaaatt 420 tattgatgat ctttttgacc ggttcttaca ttatcctata gttaaaaaac gaaagttcta 480 ccctctggaa acttctcaat tctacccttt tcgaaatgta gtacttctaa atcgatcaaa 540 tataactttt gaacctcttt ctatagattc cagtcaattt ccagcaatat ttgagaagct 600 aggggttgtc aaggttctag caattacgac tcttcggaga ttttttgagc ccaaagacga 660 aattgggatg tcaaatattg tgagaacgct attttcatcg tttctgaata actgggactt 720 tttttggaac ttttcaaaaa aatttcaaaa aatcactttt gaagtgtggg ggacatggag 780 atatttttca aaaattttca aaaaaaattt tttttgaaat tgttcaaaaa ctattctaga 840 tgatagagaa atgttcaaaa atgaggttcg cattcgagaa catcatgaaa aacaagtttt 900 aaagctcgga aaatgaacgt ttttggtcaa aatttagcac tgaaaacact ttgagagccc 960 atatttcgat tcctattgga tccggggatg agatattgct gaaaccgttt tcagcatgtt 1020 cgaaagtacc ttttcacaaa ttttgagcaa attctcaacc cccgtctgaa aacacttccc 1080 ttg 1083 // ID HELITRON8_CB repbase; DNA; CBR; 291 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000345; DNA; KW HELITRON class; HELITRON8_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-291 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-291 RA Pavlicek A. and Jurka J.; RT "HELITRON8_CB - a family of nonautonomous HELITRON elements."; RL Repbase Reports 4(10), 275-275 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 91% identical to the consensus. CC Positions 236-258 form an imperfect palindrome. HELITRON8_CB CC ~60 bp-long termini are ~80% identical to HELITRON2_CB. XX SQ Sequence 291 BP; 81 A; 66 C; 88 G; 56 T; 0 other; tcttccttat atataaaacg ctagacgcgt ctgttggtcc tagtgtccgg ctgtccggtt 60 ttgggttttt aaatgaaagg ttggccgcca ccaaaaccga acccgcggcc ttccgcacaa 120 tggctgcgca cgcacacagc tgcgccatga gggccacacc aggagagggg agggagggcg 180 tagatgttct acagtgtgag aaagaaaaat cgaaaagtga ggagtggagc gacgaacaat 240 taaaaaatat tgaattgtga agcgccgaag gcgcagcagc cagcaggctg g 291 // ID HELITRON9C_CB repbase; DNA; CBR; 1079 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Helitron; DNA transposon; Transposable Element; Cb000036; DNA; KW HELITRON class; HELITRON9C_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1079 RA Pavlicek A. and Jurka J.; RT "HELITRON9C_CB - a family of nonautonomous HELITRON RT transposons."; RL Repbase Reports 4(10), 278-278 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. HELITRON9C_CB is flanked by TC-CTGG termini CC and inserts between 5'T and 3'A. CC Shares termini with HELITRON9A_CB, HELITRON9B_CB, HELITRON9D_CB. CC Related to HELITRON3_CB. XX SQ Sequence 1079 BP; 372 A; 189 C; 170 G; 348 T; 0 other; tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg gttccgggac 60 cctagcgaag tcaccactgg accaaaattt cccaaatttt cacagataac ccgaaatagc 120 agcgagatga tgcccgtcta ttttgatttg tgaaattttg cttctgacgt cttctggaga 180 ctgagttctg aagatttgaa aggaagaaaa aattatgata agaaatctga gaaaaagaca 240 agctccctta aagaccaata caaacgcgtt taatgtagtc tttgaatttc ttaggcttta 300 agttttaaga aatcgaaata tttcgaactt taagaaatca aaatctttca gtggttttga 360 atttccaaac tttgcaaatt ttttaaatgc tgaaactata gaaacctgga tctttgaaat 420 aataagtttc caaattccaa aatgtgtaaa ttttcggatt cccaatttct gaatactcga 480 gcacttcatt tccaaatatt tgattacctg aatttctgag tttttgaatt tcggaaaatc 540 ctaatttcga aattcggaaa ttcaaaaaat ctcaaatatt tatcattttg aaaataacaa 600 caaattagga attcgtgaat gtctctctca aaaacttttc ttaaaaattt tttgttccta 660 aataatattg ggaaaacatt tcagaaaatc caaatttggt aattcggaaa ttcgaaaaac 720 cgaaaatcaa aacttcagaa tctcaaaaaa aatcagaaat tcagaatttc agaacttcag 780 aaactcagaa atttggaatt tcaaaaaatc agaatttctg aatcatgaat ccctcaaaat 840 ttctggattg ccgaatttct gatttcttga aattctgaat ttctgaactt ccgatttctc 900 gatttctgaa ctactgaatt tctgaacttc ccaactttca aaatttctta attttcaaat 960 ttgtgagcat aggccctaaa aaatagcctc cgtaaaagtg acggaacctt tttataagat 1020 tgcgggtatc gtaagcgggg gccaggaggt ttagccccga aggggcgtaa accgactgg 1079 // ID MARINER38A_CB repbase; DNA; CBR; 1421 BP. XX AC . XX DT 13-SEP-2004 (Rel. 9.08, Created) DT 13-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000436; DNA; KW MARINER38A_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1421 RA Pavlicek A. and Jurka J.; RT "MARINER38A_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(8), 208-208 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER38A_CB contains ~500bp-long TIRs and is flanked by TA CC target duplications. Sequence variants with different internal CC sequences are listed as MARINER38B_CB and MARINER38C_CB. CC Short translated similarity to MARINER15_CB. XX SQ Sequence 1421 BP; 465 A; 262 C; 258 G; 436 T; 0 other; cagtagtcca cataatcatt gttccaccct gaagtttcac tggaacacct atttaggtca 60 agtttcatga aaaggtgtca acatgaaagt tgtagccctt cttgagaaat ggtacctcga 120 aaaattcgga gtcgactgcg tgacccagaa aaatttcctg accgaaattc cgaaaaacac 180 gttttttctc atccacaaaa tcattgttcc actctcaaaa tcacgctttt tggggaaatt 240 aggtagagaa aatcctgttg ataaattaca aaattttgga aagaagatca gctgtgtaga 300 attttttgct taaaaaaatg agaaacaaac aaaaaactga aaattagtta tctctgagtc 360 ctcaatgcat ctggatagac tggaagttgg agtgtctatc gaaagatacc ggttatcagt 420 aatttgttga ccaacttggc tcgaaatatc aatttcttgg ttttttgagt tcatccataa 480 tctgatagtc tttgtcagtt taattaagaa gttccagact tttttcggtt gaattgaagt 540 caagtgaaca taaagtctat gtgggaagta tgatgagaca atgtttgagc aactctgaaa 600 gtctcccgat cttgtgaaag gggaaatgaa atgaaaatga atttgtgatt acggtgtcga 660 cgccagaatg ttcaaattcc ttgtctcagg tcgtagcaac aatcaacggt aaccattagt 720 ttcaatcacc cttccgatga tactgtcacc aacaacatgc ctacctaatg tatcaatacc 780 taaaaacact tttatgaatg agtactcatc cctaaatcga gaagatcttc aaagtggctc 840 aaagaaaacc actttcaaat gttcacacaa cataaacctg atagaaaatg aatgggcgtt 900 gatggttcat atgctttaca aaactaacaa acactatcag attatggatg aactcaaaaa 960 actaagaaat tgatatttcg agccaagttg gtcaacaaat tactgataac cggtatcttt 1020 cgatagacac tccaacttcc agtctatcca gatgcattga ggactcagag ataactaatt 1080 ttcagttttt tgtttgtttc tcatcttttt aagcaaaaaa ttctacacag ctgatcttct 1140 ttccaaaatt ttgtaattta tcaacaggat tttctctacc taatttcccc aaaaagcgtg 1200 attttgagag tggaacaatg attttgtgga tgggaaaaaa cgtgtttttc ggaatttcgg 1260 tcaggaaatt tttctgggtc acgcagtcga ctccgaattt ttcgaggtac catttctcaa 1320 gaagggctac aactttcatg ttgacacctt ttcatgaaac ttgacctaaa taggtgttcc 1380 agtgaaactt cagggtggaa caatgattat gtggaccact g 1421 // ID GYPSY6-I_CB repbase; DNA; CBR; 4218 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 29-JUL-2005 (Rel. 10.08, Last updated, Version 2) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; KW Cb000288; GYPSY6-I_CB; GYPSY6-LTR_CB; Gypsy clade; LTR. XX NM GYPSY6-I_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-4218 RA Pavlicek A. and Jurka J.; RT "GYPSY6_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 235-235 (2004). XX DR [1] (Consensus) XX CC The internal part contains one large putative ORF and thus the CC family CC was probably autonomous. Flanked by 5bp target duplications. CC Related CC to GYPSY5-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG. LTRs CC are CC listed as GYPSY6-LTR_CB. XX FH Key Location/Qualifiers FT CDS 22..4125 FT /product="GYPSY6-I_CB_ORF" FT /translation="MADLTQQIASLISVFGQLVPSQATTSTNGSQLVESIS FT TRIPNFIYEPDEDLTFDSWYNRYGDVITKDGSTLTDEAKARLVLSKLNTKE FT YSHFANRILPETPNSLKFEDLFPKLKETFKSTSSIFRKRQEFLRTEYDGSS FT IEEYTGLVLRRFTSSEFKTMTDDQTCCMVWINGLRDNSYSDIRTKALQIME FT AKPTCTLLELEKEIKRLLDVRADSKSVCSAAKQNEINAIHQKASSRDKSQK FT PPPSPCFKCGGKHWARDCQKQVKCTLCQKDGHIAKFCRTKKRDANVQKGNF FT SKVKSVIVGSATNSQRNRIYRVVTINGMKIQMQLDTGADVTLIRTKDWNRL FT GRPSLLAPTIQVKSANHQPIAVKGSFQCQFNLNGTSATGIAHVAETGTLLG FT TDWISKDKKLWNILNPSQISAVHSDAGSACNYLDITRNRLKAELNNEFSDV FT FKPELGRCTKTKASLLLKPDAKPVFRKARSVPFAALPTVSEELDRLQQAGV FT ISPVDHSEWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIF FT VTLNGGKYFSQIDLAEAYFQIELDEQAKKMLCINTHKGLFSYNRLAFGVKS FT APGSFQQIMDSMITGLEGTAAYLDDIIISGSTIEEHNQRLMALMKRINDYG FT FRIRLEKCTFLMERITFLGFIIDKDGRRPDPEKIAAVQQMPPPTNDGQVRS FT FLGFIQFYGSFVKELFRLRPPLDALTKKDAKFLWTSQCQNSFDRVKQILQS FT DLLLTHFDPKLPIIVAADASQYGIGAVISHRFPDGSEKAIYHISKALTAPQ FT RNYSQIEKEAFGLIKAVTKFHKFLYGRHFTLKTDHKPLLSIFGDKKGIPLY FT SANRLQRWAIILLNYDFTIEYVNTNHFGQADALSRLISDQIQQKECEDRIV FT AQVESEVITNLVSACERLPVTANMIRAASKKDPLLNQVYKYVVSGLWPKII FT DKSSQISFFHHRRDQLSIVADCIMFNDRIVIPSTLKARVLKMIHRAHPGIV FT RMKQLARSLVYWPSIDKDIENMVRSCDQCAAVAKNPIRNTLCSWPIPTAPW FT QRVHADYAGPLDGTYYLVVVDAFSKWPEVFPTTSITTTATINILRKVFSQF FT GDPQTLVTDNGTQFTSSGFENFCKDRGITHSRSPPFHPQSNGQAERFVDTL FT KRSLGKLKGEENADTALYVFLQSYRSTPCTSSPNGSTPAENFIGRKIRTFL FT DQLRPKDQLPNSHDTEMEKQFNKQHGARSRSYQVGEKVYVKDYRNINTATW FT IPGTIQKRIGQTMYHVAVNDTVWTRHTNQLRRRDAPIQFDVPLDTMDPIDV FT TPTATQLPSSSTHTTPSPVNTPAKPKTPPPKQYRKSTRIINQPPRLVMKPN FT QKSYH" XX SQ Sequence 4218 BP; 1269 A; 1099 C; 876 G; 974 T; 0 other; actggcgatc aggcaaaggc aatggctgat ctcactcaac aaatcgcctc cttgatatca 60 gtcttcggac agctcgtccc atctcaagcg accacgtcaa ccaatggaag tcagctcgtg 120 gaatcgattt caactcggat tccaaacttc atatacgagc ctgatgagga tctgacattt 180 gacagttggt acaacagata tggagacgtc atcaccaagg acggatcaac tctcaccgat 240 gaggccaaag caaggttagt tttatctaaa ctcaacacaa aagagtattc tcactttgca 300 aatcgtatcc tcccggaaac tccaaactcc ctaaagttcg aggacctctt tccgaagctc 360 aaggagacat tcaagtcgac ctcatcgatc ttccggaagc gtcaggagtt cctacgcaca 420 gaatacgatg gctcatcgat cgaagagtac actgggctcg tgttgcgacg gttcacgtca 480 tcagaattca agacgatgac ggacgatcaa acatgctgca tggtctggat aaatggatta 540 agagacaaca gctactcgga catccgtaca aaagcacttc agatcatgga agcaaagcct 600 acatgtacac tgctcgagtt ggaaaaggaa atcaagcgtc tactagatgt gagagccgat 660 tccaagagtg tgtgcagcgc tgcaaagcag aacgagatca atgccattca tcaaaaagca 720 tcaagtcggg ataaatcaca gaagccacca ccttcacctt gtttcaaatg cggaggcaaa 780 cactgggcca gagactgtca gaagcaggtc aaatgcactt tgtgtcaaaa agacggacat 840 attgccaagt tttgcagaac caaaaaacgg gatgcaaatg tacaaaaagg caacttcagc 900 aaagtcaaat cagtcatcgt gggatcggct accaattcgc aacgcaaccg tatctaccgt 960 gtcgtgacca tcaacggaat gaagattcag atgcagttag acacgggagc tgatgtcaca 1020 ctgataagaa ctaaagattg gaatcgattg ggtcgcccat ctctactggc acccactatc 1080 caagtcaagt cggctaatca tcaaccaata gccgtcaaag gatcattcca atgtcaattc 1140 aatctgaatg gaacatcagc aacaggaatc gctcatgttg ctgaaactgg aactcttctg 1200 ggaaccgact ggatctcaaa ggataagaag ctctggaaca ttctcaaccc aagtcaaatc 1260 agcgcagttc attccgatgc tggatcagca tgcaactacc tggacatcac tcggaacaga 1320 ctgaaagctg agttgaacaa cgaattttca gatgtgttta aaccagaact aggacgatgc 1380 accaaaacca aggcatcgct cctactcaaa ccagatgcca aaccagtgtt ccgtaaagct 1440 agatcggtcc cattcgccgc attgcccact gtgtcagagg aactagatcg tctacagcaa 1500 gcaggcgtca tctctccagt ggatcattcc gaatgggcag caccaattgt actagtcaaa 1560 aagaagaatg gatcgctaag gatgtgcgca gatttctcta cgggtctcaa tgatgccatc 1620 caactgcatc agcatccact cccaaccgcc gacgacatct tcgtcactct aaacggtggg 1680 aagtattttt cacagattga tcttgccgaa gcttattttc agattgaact ggatgagcaa 1740 gccaagaaga tgctatgcat aaacactcac aaaggattgt tcagctacaa tcgactggct 1800 tttggagtca agtcagctcc tggatccttc caacaaatca tggattcgat gatcactggt 1860 ctcgaaggga cagctgctta ccttgatgac atcatcatct cgggctcaac aattgaagag 1920 cacaaccaaa gattgatggc actgatgaag cgaatcaatg attatgggtt ccggatccga 1980 ctggaaaagt gcacattctt gatggaaaga atcacatttc tgggattcat catagacaaa 2040 gatggaagac gtccagatcc tgaaaagatc gctgccgttc agcaaatgcc accacctacc 2100 aacgacggcc aagtccgttc gtttctcgga ttcattcaat tctatggatc gtttgtcaag 2160 gagttgttca ggctccgccc accactggat gctctcacca agaaggatgc caaattcctc 2220 tggacgtctc aatgtcaaaa ttcattcgac cgtgtcaagc agattctcca atcggacttg 2280 ttgctcacac actttgatcc gaagcttccg atcatcgtcg ctgccgatgc ctcgcaatac 2340 ggtatcggag cagtaatctc acacagattt ccagatggct ccgagaaggc tatctaccat 2400 atcagcaaag ctctaacagc tccacagcgg aactacagtc agattgagaa agaagctttc 2460 ggactcatca aggctgtcac gaagttccac aaattccttt atggccgcca cttcactctg 2520 aagaccgacc acaagccatt gctgtcaata tttggagata aaaaaggtat acccctttac 2580 agtgcaaacc gtctccagcg ttgggctatc attctgctca actacgactt caccatcgag 2640 tacgtcaaca ccaatcactt tggacaagct gatgctctgt caagattgat ctcggaccaa 2700 atccagcaaa aagaatgtga agatcgtatc gttgctcaag tcgaatcaga agtcatcaca 2760 aatctggtat ctgcctgcga gcgactacct gtgactgcaa acatgatccg agctgcctct 2820 aagaaggatc cacttctcaa tcaagtatat aagtatgttg tatcaggttt gtggcccaaa 2880 atcattgata aaagctcaca aatctctttt ttccaccacc gacgagacca actgtcaatc 2940 gtggccgact gcatcatgtt caacgacagg atcgtcattc ccagcactct caaggcaagg 3000 gttctcaaaa tgattcaccg ggctcatcct ggaatcgtga ggatgaagca gttggcacga 3060 tctctggtat actggccatc catcgataag gacatcgaga acatggtcag gagttgtgat 3120 cagtgtgcag cagtcgctaa gaatccaata aggaacactc tatgttcttg gccaatccca 3180 accgctccct ggcaaagggt acacgctgac tatgctggac cactggatgg aacgtactat 3240 ttggtcgtgg tagacgcatt ctccaaatgg cctgaagtct tcccaaccac atccatcaca 3300 actacagcta caataaatat tctgagaaaa gtgttttcac aattcggaga tccgcaaacg 3360 ctggtaaccg acaacggaac tcagttcact tcatcgggtt tcgagaactt ctgcaaggat 3420 cgaggaatca cacattcacg atcaccacca ttccatccac agtcaaatgg tcaagcagaa 3480 cgtttcgtgg acactctcaa acggagctta ggcaagttaa aaggggagga aaacgcagat 3540 actgccttat atgtatttct gcagagctac cgctcaactc cttgcacctc cagccctaat 3600 ggctctacac cagctgagaa cttcattggt cgcaaaatcc gaacatttct ggatcaacta 3660 cgcccgaaag accaacttcc caactcgcat gatactgaga tggagaagca gttcaacaag 3720 caacatggtg cacgatcaag aagctaccaa gttggagaaa aggtttatgt taaagactac 3780 cgtaacataa atactgccac ttggattcca ggtactatcc agaagcgcat tggacaaact 3840 atgtaccacg tcgcagtcaa cgacaccgtc tggacccgac acaccaacca gctccgacga 3900 cgtgacgctc caatccaatt cgacgtgcca ctggacacga tggatccaat cgatgtgaca 3960 cctacggcta ctcaacttcc gagcagctcc acacatacca cgccatctcc agtgaacact 4020 ccagctaagc cgaagactcc accgcccaag caataccgga agtctactcg gattatcaac 4080 caacctccac gtttggtcat gaagcctaat caaaagtctt atcattgatt tttgttccct 4140 ttatttctag attaagtttg tagtctatcc cccacttaat catcctttcc cttctccttg 4200 ttccatctta aaaaggga 4218 // ID MARINER33_CB repbase; DNA; CBR; 1551 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000313; DNA; KW MARINER33_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1551 RA Pavlicek A. and Jurka J.; RT "MARINER33_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 96% identical to the consensus. CC MARINER33_CB has nearly perfect palindromic structure and CC is flanked by TA target duplications. TIRs remotely similar to CC Tc3 from C. elegans. XX SQ Sequence 1551 BP; 469 A; 305 C; 309 G; 468 T; 0 other; cagtgcgttc aatatcttta ggaccccccc cctctatttt cacggttctg agaaaacggt 60 aagagatatc aaaaatctgt aagcgccatt cgtttttaaa ttcaaaaata ccccgggagc 120 caaattttgg tattcatacc tcttctggta ttagtacacg gcccaaaact cactttttca 180 gccgttcaat atctttagga ccacctgaga tttttgacgg aatttcactt tttgtgtcag 240 aattccaatc caaaagtaag tcaatgccca aaattttcat atgtgatctt ggttttcgta 300 ttaccaagat gtttctgaac ttctccgaga atttttacat ttttctgctg ctcgtgacct 360 aattttcaac tcgatgagca aaattgacct aaatcatcat tcaaaagctg gaatcaacta 420 caaaaaaaca ggtaaacaaa agaaatcaat tggatttctc atggttggta tgctggaaac 480 tagatcgttc ggttcggttt cagttaatgt tcttcttcct ttttggaggg aattttggga 540 tccctgatgc ggtagaacag cctgacgctg tggtaaacgc gacaggcatc atgatccgaa 600 gctgtatcaa tagaattcag atcagaatcc atgcctgcca tggctatttc ttgattcttc 660 ctgctgtcat tcataccact gttgatagtg ctcgtcttgt cgatggctct gtttggtctc 720 tggaatatca tagatggtcc tgcagataat caaaactttg aattcacaaa gtcttggtgg 780 atagatgtct tcaaagtttt gataaactgc aggaccatct atgatattcc agagaccaaa 840 cagagccatc gacaagacga gcactatcaa cagtggtatg aatgacagca ggaagaatca 900 agaaatagcc atggcaggca tggattctga tctgaattct attgatacag cttcggatca 960 tgatgcctgt cgcgtttacc acagcgtcag gctgttctac cgcatcaggg atcccaaaat 1020 tccctccaaa aaggaagaag aacattaact gaaaccgaac cgaacgatct agtttccagc 1080 atactatcca tgagaaatcc aattgatttc ttttgtttac ctgatttttt gtagttgatt 1140 ccagcttttg aatgatgatt taggtcaatt ttgctcatcg agttgaaaat taggtcacga 1200 gcagcagaaa aatgtaaaaa ttctcggaga agttcagaaa catcttggta atacgaaaac 1260 caagatcaca tatgaaaatt ttgggcattg acttactttt ggattggaat tctgacacaa 1320 aaagtgaaat tccgtcaaaa atctcaggtg gtcctaaaga tattgaacgg ctgaaaaagt 1380 gagttttggg ccgtgtacta ataccagaag aggtatgaat accaaaattt ggctcccggg 1440 gtatttttga atttaaaaac gaatggcgct tacagatttt tgatatctct taccgttttc 1500 tcagaaccgt gaaaatagag ggggggggtc ctaaagatat tgaacgcact g 1551 // ID GYPSY6-LTR_CB repbase; DNA; CBR; 300 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; KW Cb000102; GYPSY6-I_CB; GYPSY6-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-300 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-300 RA Pavlicek A. and Jurka J.; RT "GYPSY6_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 236-236 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. The internal part is listed as GYPSY6-I_CB. CC LTRs are flanked by 5bp target duplications. Related to CC GYPSY5-I_CB, CC GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG. XX SQ Sequence 300 BP; 109 A; 46 C; 82 G; 63 T; 0 other; tgttacgtcc ttaggatccg gcattctggc cggctcaagg aatacgaata gtagttatag 60 aatacagatt tattcaggta ctaaagatgt acgagaatag agggggaaaa gtagagaagg 120 ctgggagaga ctaggacaga ccgagaatgg ttgtcagccc caaagaaaga ggggttctga 180 ccaatgaaac aactaagaag aagagtgcca gagaagggcg ctcttcttag gtgggtagat 240 cacaaataat ttggtagatc aaatataaaa ctaatggaag tatgcataga atgcaacacc 300 // ID LINE2B_CB repbase; DNA; CBR; 2571 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 27-JUL-2005 (Rel. 10.08, Last updated, Version 2) XX DE Caenorhabditis briggsae family of LINE retrotransposons - a DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR-1; KW Cb000177; LINE; LINE2B_CB. XX NM LINE2B_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2571 RA Pavlicek A. and Jurka J.; RT "LINE2B_CB - a family of young autonomous LINE RT retrotransposons."; RL Repbase Reports 4(4), 110-110 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC Distantly similar to LINE2C_CE, LINE2B_CE, and LINE2D_CE. CC LINE2B_CB contains a single open reading frames with endonuclease CC and RT domains. XX FH Key Location/Qualifiers FT CDS 654..2396 FT /product="LINE2B_CB_ORF" FT /note="endonuclease and RT domains" FT /translation="MVSDEFRILSAPHCRAARALIKSRIRSSPKVPPLSAN FT GCLITSEHEKSTLFTKTFSSNYNHLTSSASITPAISHQHLPFSGSDLEIFD FT PWIIEKLLRKLPPRCGYSPHSANYFIIKKCATTLALPLSIIFSDSLSTSHV FT PDSWKHAVVVPIPKKGSPSSPENYRPISLTDPFARIFERLVCDRIKWEFLH FT QFSSLQHGFLSNRSCTTSLVQSFSNYKATLLKYNTLDVVFFDFRKAFDQVH FT HQLLIQKLASFGVPKSYVAWFSSFLSGRTFSVKIYDFIGPPSSVIPSGVPQ FT GSVSGPLLFLIFINDLLLELEQIPSLHLAAFADDIKLYSHDPIALQTGINM FT VVNWATANHLPLAHSKTALLRLGSHNSSHPLNIAGVTLTPSSSVRDLGLIT FT DSSLKFSAHINKITSLALLRSKQLLKSFRSKSPEFYIHLFKCYVLPILEYC FT SVVYSPPPSSRLALKLESPLRFFSKCIFQRCNIQYSSYSDRLSILNMFSIR FT HRRLKAQLILLYKFLNGSAYFPNLNAHVKYSSSPRRPMNLIIVQPYSSDYF FT SXIVPLWNAITSQVTRFLLPSEFESLISSSITRY" XX SQ Sequence 2571 BP; 594 A; 780 C; 317 G; 873 T; 7 other; cctccctcat tgctcatcta gataagttcc tccctcttga ttcctccatt cttntgnntg 60 attttatttt ccccagttta tcttggaatc cccttaacca taatcatcag tttgnntctt 120 ttctcacttc tagaggtctt caccaacatg tctgtttccc aactcgggtc tccgatacct 180 cagctaaaat tctggacctt gtaatctcct ctgatgatct tcctctttct aacgtcgccg 240 tcgagcctcc actgcttaac tctgaccact ttgccgtcaa gttccacatt cttcctacca 300 ctctcactcc tctatctcca tccatatctc gccctcgttt atggttcaag aaatgcaatt 360 tgcgctccct caactccgat ctcgccacca tcgactggga cctctcattt agtantttgc 420 cttctccttc cgaaaaattc actaaattta ttgatattct ttccacactt attcgtaatc 480 atactcctct gcttcctcca cccaaatcca aacccttttc tctaccattt cgaaagctta 540 aacgggcaag gcacctctac tccaagcttc ttaaaactcc aactacggct cccaggaaaa 600 ttctccatgt tcgaactcgt atcaaatctc tcactcgaac aatcaataag aaaatggtaa 660 gtgacgaatt ccgaatcctc tcagccccac actgtcgtgc tgcccgcgcc ctcatcaaaa 720 gtagaattag atcttcacct aaagtcccac ctctttctgc taatggctgt cttataacct 780 ctgaacacga aaaatccacc cttttcacca aaacattctc ttctaattat aatcatctca 840 cttcatccgc atccatcact cccgcaataa gtcatcagca tcttcctttt tctggctctg 900 accttgaaat cttcgatccc tggataattg agaagcttct tcgcaaactc ccgcctcgtt 960 gtggctattc tccccattcg gccaattact ttatcattaa aaaatgcgcc accactctag 1020 cattaccttt atcgattatc ttctctgact cactctccac gtcacatgta cccgactctt 1080 ggaaacacgc agtagtcgtt cccataccaa aaaagggttc tccttcatcg cccgaaaact 1140 atcgccccat ttcgcttact gacccattcg ctcgaatttt cgaacgattg gtatgtgatc 1200 gcatcaaatg ggaattcctc catcaattca gtagtcttca acatggtttt ctctccaaca 1260 gatcctgcac cacctctcta gttcaatctt tttcgaatta taaagctact cttttgaaat 1320 acaatacact agacgtcgtc tttttcgatt tccgcaaagc cttcgaccag gtacatcatc 1380 aacttctcat ccagaaactt gctagctttg gagtccctaa atcttacgta gcttggttct 1440 cctcgtttct ctctggtcga acgttctctg tcaaaatcta tgattttatt ggaccccctt 1500 cctctgtcat tccctctggt gttcctcaag gatcagtctc cggtccctta ctatttctca 1560 tattcatcaa tgatctgctc ttagaacttg aacaaatccc ctctcttcac cttgccgcct 1620 ttgctgatga tatcaaattg tattctcatg acccaatcgc ccttcaaact ggtatcaaca 1680 tggttgtaaa ttgggctacc gccaaccatc tccctcttgc ccactctaaa actgcccttc 1740 ttcgcctagg ttcccataat tcttcccatc ctctcaatat tgcgggtgtc acacttactc 1800 cctcctcctc cgtccgggac ttgggactca ttactgattc ctctctcaaa ttctctgctc 1860 acatcaacaa aatcacatct ttagctcttc tccgttccaa acaactctta aagtcattta 1920 gatctaagtc tccagaattc tacattcatc ttttcaaatg ttatgttctc ccgattcttg 1980 aatattgttc tgtagtttat tcccctccgc cttcttctcg ccttgctcta aaactagaat 2040 ctcccttaag atttttctct aagtgtattt tccagcgttg taatatccag tacagttcct 2100 attctgatcg tctctctatc ctcaatatgt tctccattcg acatcgtagg ctaaaagctc 2160 aactaattct tctctataaa tttttaaatg gctctgccta ctttcctaac ctaaatgcac 2220 atgtcaaata ctcctcctcc cctcgtcgcc ctatgaactt aattattgtt cagccctact 2280 cctctgacta tttttctnca attgttcccc tgtggaacgc catcacttcc caagttaccc 2340 gatttctcct accttccgag tttgaatcct taatttcttc cagtattacc cgttattgat 2400 atatttgctc cctatttttc tttttctacc ggttacatct ttcctgtgtc aaatatctaa 2460 attatcccgt ttcccctccc ctactcagat cggcctcgtg aggggcattt tttctgagtc 2520 tttcatgtcc tgccctctaa tgttttatta cacctgatca ataaacaaat t 2571 // ID DNA8-6_CB repbase; DNA; CBR; 266 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; Cb000094; KW DNA; DNA8-6_CB; Interspersed repeat. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-266 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-266 RA Pavlicek A. and Jurka J.; RT "DNA8-6_CB - a family of DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are ~90% identical to the consensus. CC DNA8-6_CB contains 53bp-long TIRs and is flanked by 8bp target CC duplications. XX SQ Sequence 266 BP; 78 A; 55 C; 49 G; 84 T; 0 other; ggtggtacca gggatgagaa ctcggaaaat gagaactgct acaaatgaga actagacaaa 60 tgagaactca gtttaccggc tctaatttcc ggctcaggat ccaacttttt tagaaaaata 120 gtttcgaaat ggtctcgttc ttcacaatac ttcaagattt tccaaaaaaa aatccgtgtt 180 ttgacatgta ttttacgagt tcttattcgt acgagttctc atttgtagca gttctcattt 240 tccgagttct catccctggt accacc 266 // ID MARINER20_CB repbase; DNA; CBR; 1529 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000197; DNA; KW MARINER20_CB; mariner/Tc1 superfamily; palindromes. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1529 RA Pavlicek A. and Jurka J.; RT "MARINER20_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC Related to MARINER8_CB and MARINER14_CB. MARINER20_CB contains CC ~700bp-long TIRs and is flanked by TA target duplications. CC The central regions bears similarity to transposases. XX SQ Sequence 1529 BP; 458 A; 306 C; 319 G; 446 T; 0 other; cagtgcgttt cacatttata cggtcaccct aattttggag tataacagaa taaccgatgg 60 gaaacacgta ttcggtgact aaaaaatcgg attcaggacc tcaaattaca tatccttgat 120 agttttcata ttgataccaa caaaactggc aagattaggc caccttgact gaaaaatggc 180 tctctgcaag cgtttcatat ttatacggtc acctccagaa aaacaagaaa aagagacaat 240 ttaatgttta gtggcagcac catacgaatt gataacatca aaagtacgat ttggcataga 300 ttgaagagga attgggatgt actggttgtc ctgaactgat ctcctgctcc gaatcggatc 360 attcggcaac gattgcattc ctgagcaccc ggcaggttct gtactttgtg caatggtggt 420 aaatacttaa ctgacatgtt ttccataaaa ttccgattca gaaacatgac tagccatagc 480 gaaactttga ttttttaggg tcggaatcat gctaaatgga tcagctgatg cgacggaagg 540 acttctccta ctgggaaatg atcttatggt gatgaaatcg acaacggaaa tggaggacag 600 gaccctcgaa cactttttga taatccccgg agttcatacg accaggggca agtgccatct 660 tgagatatct agccccagag aaagcacaac acaccagaag actgtcttca ccgaaggtag 720 accaaatttg agaatccgaa acatttgatt tttcaaaaaa aatatgtttg gatgaaaata 780 aattcaattt gaacgaatga tagccatttt ggaatgatct gcgtgaagat cttttggtgt 840 gttgtgcttt ctctggggct agataactca agatggcgtt tgcccctggt cgtatgaact 900 ccggagatta tgaaaaagtg ttcgagggtt ctgtccttca tttccgttgt cgattccatc 960 accataagat catttcccag taggagaagt ccttccgtcg catcagctga tccatttagc 1020 atgattccga ccctaaaaaa tcaaagtttc gctatggcta gtcatgtttc tgaatcggaa 1080 ttttatagaa aacgtgtcag ttaagtattt accaccattg cacaaagtac agaacctgcg 1140 gggtgctcag gaatgcaatc gttgccgaat gatccgattc ggagcaggag atcagttcag 1200 gacaaccagt acatcccaaa tcctcttcaa tctatgccaa atcgtacttt tgatgttatc 1260 aattcgaatg gtgctgccac caaacattaa attgtctctt tttcttgttt ttctggaggt 1320 gaccgtataa atatgaaacg cttgcagaga gccatttttc agtcaaggtg gcctaatctt 1380 gccagttttg ttggtatcat tatgaaaact atcaaggata tgtaatttga ggtcctgaat 1440 ccgatttttt agtcaccgaa tacatgtttc catcggttat tctgttatac tccaaaatta 1500 gggtgaccgt ataaatgtga aacgcactg 1529 // ID MARINER43_CB repbase; DNA; CBR; 1802 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000476; DNA; KW MARINER43_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1802 RA Pavlicek A. and Jurka J.; RT "MARINER43_CB - a family of mariner/Tc1-like transposons."; RL Repbase Reports 4(9), 238-238 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 97% identical to the consensus. CC MARINER43_CB contains 319bp-long TIRs and is flanked by TA CC target duplications. The internal sequence bears a full-length CC similarity to Tc3 transposase, however, no complete ORF found CC in the genome. The family might have been autonomous in the past. XX SQ Sequence 1802 BP; 535 A; 412 C; 390 G; 465 T; 0 other; cagtgcgtcg cataactata ggacccccct caatttgggg tgtacagcaa aaactagagt 60 agataagaaa aatctgtaaa tgcagttgga ttcagaatca aaaataaccc taggaaccaa 120 attttcagaa ccctaccatt ttccataccc tcacggcaag aaaaaggtcc attttcgacc 180 gtcgcataac tataggaccc ccagatgttt tgggtgcaca ggtcgttttt tgaccatttt 240 atctactcta aattgtttta tttacgtttt tcattgtttt aagctttttc tgaagatgtt 300 tctcgcaact ttctttcaac atcttcgtgt ggaacatcca acaatgcaag gaactcattt 360 tcgagatcaa gcttcacttc tggcccttcc gtaaatctcc agctgcattt ttttacagta 420 attcggatcg tggcgatagt ttgatgtgca ggtacagtaa ctgaaaatat tagttggtcc 480 ctatcccaaa aatatgcctc ggaaacattc cttcaaccat ggctcgcgct acactcctct 540 ctcttgccga acaggccaaa gtggatgtga tgaaacaact tggactgaca cttcacgaga 600 tgtcccgtca actcacgaga agtcgtaacg tcatccgaaa atacctcgcc gacccactcc 660 attacgagaa gaagctgaag gagtctgctg gaagaccgag aaagctgact tcacgtcaag 720 aacgcagcat cttgaaatca gtccaactcg cccaaaagtc tgaacgatgt gaagaacgaa 780 ctcaagctgc agaatcatca aaagaagtgg agtcatcgtt cgtcagaaga tggccaaagt 840 tccgaagatg actgatgccc acaaagcagc acgtctcaat ttcgtgaaga accatttgac 900 tacgaaatgg gagaaatctg ttctccaggc gcaactttgg cggcggctct gttatgattt 960 ggggcgcttt ttgcaatgga aaaaagctcg aactgcaatt catcaccacg aaggagaatt 1020 ctgccacgta ccaagcaact ctccaaaagg ccgtggctcc gttcttccgc aacagacgcc 1080 acacccacac gttccaacag gacaacgcat ctatccacac gagcacctcc acgaggaact 1140 ggttcgtctc gaaacgaatc aaggtgctcg aatggccagc atgcagtccg gatctaaacc 1200 ccattgagaa catctggggc atcctcgttc gccgggtcta tcgaaacggg aggcaattca 1260 agaccgtgca ggagctcaag gacgcaatcc aggctgaatg ggacgctctc actgatgccg 1320 aattgaagaa tcttgtagcc agcatgtcga gcaggatcgt tgaagtgatt caaaacaacg 1380 gcggagagac taagtactga tttttcgatg tgttttttgt tagttgctta gaataaatgg 1440 attttgttga ctgaagggaa aatcggattc agacatgttt actttgaaag aaagttgcga 1500 gaaacatctt cagaaaaagc ttaaaacaat gaaaaacgta aataaaacaa tttagagtag 1560 ataaaatggt caaaaaacga cctgtgcacc caaaacatct gggggtccta tagttatgcg 1620 acggtcgaaa atggaccttt ttcttgccgt gagggtatgg aaaatggtag ggttctgaaa 1680 atttggttcc tagggttatt tttgattctg aatccaactg cattcacaga tttttcttat 1740 ctactctagt ttttgctgta caccccaaat tgaggggggt cctatagtta tgcgacgcac 1800 tg 1802 //