ID Gypsy-33-I_NV repbase; DNA; NEM; 4103 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-33_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33-I_NV; KW Gypsy-33-LTR_NV; Gypsy-33_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4103 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4103 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-33_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 497-497 (2007). XX DR [2] (Consensus) XX SQ Sequence 4103 BP; 1257 A; 803 C; 1126 G; 917 T; 0 other; ttggcgacga ggtaaactgt tatttctttg gctgaacggc tttgttgaag aagatagagg 60 cgacatttta gactgattat ttgcggcatg ccagacgaca atagtgaaac ggcggcgatc 120 ctaactccga tagatgtgag agggattccc tgctttaacc ccagggaaga ctcttcaaac 180 ttggcgatca gatggaagaa atggaagcgg tcattcaacc tttatctgac agcaaaagga 240 gtagtgaatg acaaacagaa ggtagcgcta cttctgccca cggcgggact agacctacag 300 gaagtttatt ttactttggt cggcgaagac gaggaaaaag cattctctga atgtgtaaag 360 cttctggacg actatttcat tcctaaagtc aatttgccat ttgaaaggca ccagtttcgc 420 caaatgagtc aggctccagg cgagaaagtt gattagtttg tatcacgttt gagacaaaaa 480 gcgagcacgt gcgacttcaa taacgtagac gaaacaatac gggatcaact aatagagaag 540 tgtttagaat ctaaactgag gcggaaattc ttggagaaag taaacgctag tttgaaagat 600 ttacaagatg ttgctcgcgc ttacgaggcc gtagaagaac aaatgaagtc attggagagt 660 tcgcacgcgg tgaacgcact caaccaaaac atgaataatg gcggtgatca cacaaagata 720 aaccgccaat caggcctgaa ccaaggacgt tgctttaatt gcaatcggac aggacatatt 780 gcgagagacc cagtctgtcc cgcgaaatct cagaactgta actcgtgcgg gataaaaggc 840 catttctcgg cgtgttgcaa gactacacgg agaaagggca acgcgtatca ggttgccgcc 900 gaggagaacg gggattcgga aatagacgag tcgtatgcgt ttgtggtcgg acagaatgac 960 ggcgctcgct ctggcgaagt gaacctgact atcggaggag taagcctaga gggagtcctg 1020 attgactcgg gagctacatg taatcttatt gattatgcga cgtggactta cttgaaggac 1080 catcgagtag aatgcaactc cgcgagttcc aacaagaaat tgtttgccta cggacaaaga 1140 aaaccaattg acgtcgcagg aactttcacg acagagataa tatgcgaggc gagtggcaag 1200 aaatgccggg acgagttcac ggttatagag ggaaaggaaa ggctttgcta ggaaagaaga 1260 cagccgagca gcttaaagta cttagggtcg ggccggagac aagagaaagt gtgagtgcgg 1320 ttgtagaagc tagcgattct gatattcgcg aacagtattc tgatatattt tcgggagtcg 1380 gaaaactcca agattacaag ttgaaacttc atgtcgatga aggagtctcg ccggtcgcac 1440 agcctgtacg gaggttaccg tttggattac gggatagacg agaagctgga tgatttgcta 1500 gagaaagaga taatcgaaga gataccggaa gcgacaccga caagatgggt ttcgccactg 1560 gttgttgttc caaaggctga tggcaaggac atacgcgtat gcgtagacat gagaagagcg 1620 aacgaggcga ttataagaga aaggcacccc attccgacaa tagaagaggt gctgtacgac 1680 ctgaacggcg cgactgtgtt tagcaaaatc gacttgaagt ggggtttcca tcaaattgag 1740 ctagacgagc actcgagaga catcactaca ttcgtgacgc acaggggaaa tatcagaaaa 1800 tcatttcgga tgttttgacc ggctgtaacg gagtggcgaa cattgcagac gatttgattg 1860 tttatggaac tgatctagcc gaacacgatg caaatttgca taaagtgctg tcacggctac 1920 aggagaaagg cctgacggta aatggagaca agtgtcaatt tagattaccc aagttgacat 1980 tctttgggca tgagctcagt gcgcaaggaa ttacaccgag cgaagagaag attgcggcaa 2040 tagtgaatgc gagaccacca cagaatgttt ctgaagtgag atcatttgta cagcttgtac 2100 aatattcggc gaagttcatt ccaaattttt cacagatcgc caaccgttgc ggcgtatgct 2160 cagaaaggaa cagtcttttg tctgggacac agaacaacaa gaggcatttg acaagctaaa 2220 gaaactgatg actaccgcga ctgcattagc atattttaag agtgattgca agacgagaat 2280 tgtgacggat gcgggaccgg aagggattgg cgccgttttg cttcaactac aagacgaaca 2340 gtggagagct gtatcgtatg cctcaaggaa tctttcagac gtggaaaggc gttatgctca 2400 gacagagaaa gaggcgcttg ctgtcgtgtg ggcatgcgaa agattcaaca tttacgtgta 2460 tggtcaggag tttgaattgg agacagacca caagccattg gaatgtattt tcggtaagac 2520 ctcgaaaccg tcagcaagga tcgaaagatg ggtgttacga ctccagatct acaactacaa 2580 agtgatttat cggcctggga agacaaacat tgcagatgct ttgtcgagac tgaatcagag 2640 aagaccaaag gataagagca gcgagaccga ggacactgtt agatttgtgg ctatggaggc 2700 aacaccggtt gcgttgacaa ccagggaaat tgagcgcgcg tcagagaacg acccggaact 2760 acaaagcgtc cactactaca tcaggtctgg agactggtct cagtgtaaac tagcggcgta 2820 cacttgtata aagaatgaac tgtgcactgt agggaagctt gttatgcgag gagacagaat 2880 tattatccct ggaagtttga ggagcagagt cctggaggca gcacacgagg gacaccaggg 2940 catagtaaag accaagagcc gacttaggac gaaagtttgg tggcctaaga tggacagtga 3000 cgccgagcgt gtctgcaaat cttgtcacgg atgtcacgtg gttgggaagt ttgctgcccc 3060 agaaccaatg aaaaggtcgg aaccgccgtc cggaccgtgg caagacctgg ccatcgacct 3120 catggggcca atgccgacag gagaaagctt gttagtaata gttgattatt acagtcgttt 3180 ttacgaggta gttattatga actcaactac atcacacaag gtagttaata tgccttaacc 3240 caagtcttcg ccaggttcgg attccctcac tcgattaagt cggataatgg gtcccagttc 3300 gtcagcgaag agtttacaag atatctacgg gaatgcggga tcgagcacag gatatcgcca 3360 ccactttggc cgcaggcaaa tggcgaagtt gaacgacaga accgcacgct gttaaaggca 3420 ctcaagatag cagcggtgga aggcaagaac tggagaaacg agctgccaac atttctgtta 3480 gcatatcgtt ctactccgca agcgaccacg ggagcgacgc cagcattttt gatgttcggt 3540 agagagctca aaacaaaatt gccagaactc agaggggaga agtcaatttc ggatgagagt 3600 atgagggatt tcgaatggag gaacaagttg agtcaaaaga gttatgcgga cgacaagcgt 3660 catgcggtaa gcagtcctat agtaccaggg gacaaggtgt tgctgaaaaa caccaaaaca 3720 tctgggaaac tggagccgaa ttttgaaaca gaaccgtata catttataac aaacgagggg 3780 agcgatgtga cagtagagtc agaggaggga gttgtataca ggagagacag ctcatttgtc 3840 aagccctaca atgtcccagc agagcggagt gagccggatc agccgccaga gaacgaagag 3900 attagctcta gtgctagacc tagacgcaca gtaaagacac cagagcgctt taaggacttt 3960 gttttggaca tgcgctagag tgttacagaa acaatacagg gacatatcaa tgatatatgc 4020 catattactt ttatacttgt cttgttttgt ttgtagatag gattttataa ttattaatgc 4080 gtaattaagt ggaaagggag gga 4103 // ID Gypsy-45-LTR_NV repbase; DNA; NEM; 123 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-45_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45-I_NV; KW Gypsy-45-LTR_NV; Gypsy-45_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-123 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-123 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-45_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 524-524 (2007). XX DR [2] (Consensus) XX SQ Sequence 123 BP; 31 A; 27 C; 26 G; 39 T; 0 other; tgttgtgagt agtcccttat atggagtcac gccaccacgt gactcactac tgttatgtaa 60 gcttgccatg tgcgttatta aaaaaagttg ttgcctgttg aaccctgtag tccgatcata 120 aca 123 // ID SAT-2_NV repbase; DNA; NEM; 1378 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE SAT-2_NV non-autonomous DNA transposon - consensus. XX KW Satellite; Simple Repeat; MSAT; minisatellite; SAT; SINE2-4_NV; KW MSAT-4_NV; SAT-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1378 RA Kapitonov V. and Jurka J.; RT "A family of SAT-2_NV minsatellite DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [1] (Consensus) XX CC This is a unit that forms a very interesting family of satellite CC DNA. This unit contains also MSAT-4_NV: ~11 copies of MSAT-4_NV CC (pos. 1-661) and one copy in the inverted orientation (pos. CC 1257-1204). The SAT-2_NV contains also two copies of 102-bp CC 5'-terminal portion of SINE2-4_NV (including the tRNA-derived pol CC III promoter) at pos. 889-789 and 969-1071 . These two copies are CC in different arms of a long imperfect palindrome (pos. 529-1339). CC The palindrome is followed by the 3'-terminal imperfect (TAA)n CC tract. XX SQ Sequence 1378 BP; 399 A; 410 C; 242 G; 327 T; 0 other; taccctatat ccctgagtat ccacgcctaa ctaagctaca cccctacgac ctagcactaa 60 ctacgctata ctcctgaata cctaccccta actaagcctc acccctatga cctagcaata 120 actacacttt acccctgagt acccaaccct tgctaagcta cacccctgtg acgtagcact 180 aactacccta tacccctgaa tacccaaccc taactaaact acacccctat aaccgagcac 240 ttacctaccc tataaccctg agtacccacc cctaactaaa ctacacccct atgtcctagc 300 actaactagc ctatacccct gagtacccac acctagctaa gctacacccc tacgacctag 360 cactaactag cctatacccc tgaataccca cccctaacta agctacaccc ttatgacttg 420 gctgtaacta ccctataccc ctgagtaccc acccctaact aagctaaacc cctacgacct 480 agcactaact accctatacc catgagtacc caccgctaac taagctacac ccctatgact 540 tagcacttac taccctatac ccctgagtac caacccctaa ctaagctaca cccctatgac 600 ctagcactta ctaccctata cccctgccta cccatcccta actgacctac acccctatga 660 cacctaatca cataactacc ctttacccat gtatgaccaa gcgcttacca acttgcaccc 720 ctgtgaccct gccgtttata tcctgtaccc ctgtgcaccc accccctaat gccaccgtcc 780 ttaccttaac acccctgaaa aagtctctag tttatcttac ctggattcga accctggccc 840 gtttgcttga gaagcgaagc ccgtaccact gagccatagc gccactctcg agatatcaag 900 gaaaaactac tctatacctt ataaggctgg gtaaacaagg ctatacggta gttacttcta 960 gttttcaaga gagtggcgcg atagctcagt ggtacgggct tcgcttctca aacaagaggg 1020 ccggggttcg aatccaggtc agatcaactt gggatttttt caggggtgta aagataagga 1080 cgttaagggg acgttaagat aagtgagttt gtgggtgagt tgacaggtgt acagggtaac 1140 aagagttggt caaaggggta ctaggtttca agggatggta ataagggtca atgatatcaa 1200 gaactaggtc ataggggtgc aagttatgaa tgagtgggta cacaggggta gagggtatca 1260 atggcttggt cttggaggtg cagggtttta ggggatggtt caaacaggca cagggtttca 1320 agagctaggt aatatgggta cattataata attaataata ataattaata ataatagc 1378 // ID DNA-TA-16_NV repbase; DNA; NEM; 901 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-16_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-901 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-901 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-901 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-16_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 901 BP; 267 A; 182 C; 177 G; 275 T; 0 other; aggtaatggt acctattatc ggacacttta gatttacgct aaaatatctc gcgtacaaaa 60 cacaattgag tcttaggttt tacagctaga aatcactgac tattaaacat aataattcga 120 ccaatttaac aaaaattcga tggttaaatt tgggagaaaa caatcgttcg taagacgtgt 180 tgtgaagccc tattatcgga tacctagccc tattatcgga caccctagcc ctattatcgg 240 acagcagatt tcttctaaaa aaacaacggg aaaatcatgc ttcattttca ttaaaatact 300 gcagacaata attgttgaca tatgtacttt gcaaaactca cgatagtttt tagtttgaga 360 ctctttcttc tccgtagcaa gcgattcaaa acacatgcat cgcgcgcgtg acaaactgca 420 cggcgaaatg tgcgtttgct catcgatcgc tcaaatttac gttgaatcgt tcgatgattg 480 ctcgactgtc cgataatagg gcaccgaggt taggtacgaa caattcgagc tatcccgaag 540 tgtctacgga aacagaggcc aaatagcatc ctgggagatc aacaacaaaa tggcggattc 600 gccgagcgac tttcatcacg atcggtaaat cttggacttt tttacggctt cttttcgtcc 660 tcgcgtattc aagtcaaaga gaggatttca atcgccattt tgcggtgcgt gagagaaaat 720 tatttctagt tttgcgaaac aataaacact cgtaaaaagc ttcggaatac atgttttctg 780 aatgttgttt tttcgactcg atgggtcatt tttcggcgtg ttttcctatt gtttgagata 840 tttacaattt ttttcgagtg tccgataata gggcactgtc cgataatagg taccactacc 900 t 901 // ID Helitron-N4B_NV repbase; DNA; NEM; 3403 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Helitron-N4B_NV non-autonomous DNA transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW AT target site; NVREP512; Helitron-N4B_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 338-2028 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 338-2028 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3403 RA Kapitonov V. and Jurka J.; RT "A subfamily of Helitron-N4_NV non-autonomous DNA transposons RT from the starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 94-98% identical to the consensus. It was reported CC originally as the unclassified NVREP512 transposable element CC [1.2]. This transposon carries copies of DNA-3A_NV (pos. CC 1562-1422) and DNA-5-9_NV (pos. 2403-2557). XX SQ Sequence 3403 BP; 1075 A; 595 C; 656 G; 1075 T; 2 other; tagcggagcc agcgcggccg taggccgcgc gcggagctcc ataggtatag aaatatggta 60 tagctatgcg acttggtttt tgtggtcatc gcgcgggtat cctgtggtgt cacaatccat 120 ccatccatcc agtcaatcgt gcaactccca ggcccactcg gtctcacaag gggaatgtga 180 ttttacgctt tttttgcctc ctatcttaac tagaaaatag tatttaatga gaaagatgag 240 gatttaaata ggctgattgt ggtcgagggc taaacaagtc tttgaggaac cgtttcgtct 300 gaagaaactg ataagataag acgtacgagt cgatagtaaa atctacccga gtgttcgtga 360 atccgcccgt ctcgttcttc ttcaattgta aacagcagct aaaaagagga cttcagactc 420 aacactgtat tctcataaat gcgtcacgaa gcaaaatcaa agcaaaaagg taatgttatc 480 atattattat ttaacagggc aattaaactg aaaacttaca ccaaaacaaa acgttttctg 540 accgtagcct taacatactt aaattgttca cacaatttgt gaacacaatt gtgttgtcaa 600 aagttatact aaaattcttc cttctacaaa taaaggctta tattgctaag gtagggagga 660 gtttaacggc aaaaaaaatg ctcagttgta ttggataaat aatcgattka gaactatatc 720 cggcaattta ccacatagtg gaaagcgaat gttttcgaga acaacatata agtaagctta 780 atatttcgca atcagtaagg catctaaaaa taattttctt tctctataga tttgatcata 840 tttttaagat tctagagttc gaaaatgtgc ctttatcact ctataaaaat ctttattgag 900 atttactgtg tctgttttgg ttgatacata taaatttgtt tttgtttctg tctcttttat 960 accaaactgt tatgagataa aaagtgcttg tgtaaacact gtttgagact tgaatagttt 1020 aatacaattc ttgccaagtg ttagggttcg aggctgtagc taagaagttt gttactctga 1080 gtgtttcaaa atatccgcac tcaaacagaa ccaaaaccaa ctgccatgaa cttacttgtc 1140 cacgcgataa actagcgtac gccattttct gcgcgtgctc tattttaaat tgtaacgttc 1200 ttacgcttac atggaattac agccttgacc aaactaataa tacactaata ataatttaac 1260 aatacacaat aataataatt gtccagacca acagggtcca aagtcagttc ttaatgattc 1320 ttaaacacat atcactacac ttgcctaggg ccaagttacg tgcttagtaa ttacatgatt 1380 tagctggaat agctatgcaa tgacaaggat atcttggtcc cgggggaggg actccactat 1440 aatcagatgg gggtgattgt tgatgggaga gcaacttggg tgtggtcagc acctaagaga 1500 tagcaaatcg ggtggggtag aaggaatttt ttaaccctta gagatagcag aatcgaaaac 1560 aacccccacc ccaggtagct atgaaatgac aaggatacct ttttttcagg tgaataaagc 1620 aaggactaaa gtatagccgt cattataggc tggctgaaat gaaagcagat gtaaataaac 1680 gtttttcata ttcctttttt gcttagtata attatattca atcaacacac attctttccc 1740 tatagccaac ataatctgct cttgctctgc tgatacttcc ctaaagtctg tgtggatata 1800 agtctttaac tgtcaacaaa attattgacc atgttatgat ttctgatgct tgaagaccag 1860 gtcttctgta cttactgcaa agttacttac tgcaactgta attaactgca aactgattgc 1920 attattctca tgtgcatagg taacaacaat aaatactatt tgcatatata acaaaatgct 1980 ggctacactg ttattagcaa atgtagtctt tttttcttgt aacttttcta tgcatttgct 2040 caaatggctt ggccctctac atgactgctt attattcatg aacatggttc aagagagact 2100 catatgtaat aatggcaggg gagagggctt tgaatattta aaatatttgg ttgtttgtta 2160 ttagatggaa gatgttttta atacaggata aaagagaaag gatggtgtac attaaaagga 2220 ttatttgatt tatcaaagat ttgtagtttg ataccgatga atataagatt agtaaaaatg 2280 tatcaaaggg attagtatat atgaggtggt gtagaattga agatcaggta ttttagggtg 2340 ttgaaagttt caacctaggt gttatggggt atgtaatttt ggactcttta aggccccata 2400 gtgcatagcc gtagcaggcc tagaattatt gggggacaca atacataaac attaagaaaa 2460 caatgggggg acacagccac gcccctactg gtcatttcct tattattttt gacaattttg 2520 gggktgaacg tgcccccagt gccccacccc ctgctacggc cctgtagtat gataatagat 2580 ttgcaaagaa cactaaaaag gacatgaaaa cgtctgtaat atcatctttt taagcactct 2640 ttacaaatct ataatcatac tacttcgcct attaccaagt gcaaccatat ccagccacag 2700 cacctcggtc cataccacca tatttatagc ctaacattac cccttgcttc aaggtagcca 2760 aaattatgct tagcaccatc tgctgtaata ctgaatgcct aaactcggtc atgttttttt 2820 tttcaggaga gttttaaagc tatatataat aacaactttt ctcttattta ttcaaggggc 2880 acataaactt gagggtccct ttttctgaaa aaaaatcttt gtagattatc tgaagtatac 2940 taaaaaaatg aaacatgaca taaataaata gggcccaatt tagcaagatc ttattatatg 3000 gcaaattata aatatatttt ctgtatcagt tgtctatcga gtacaactct acgtaagagt 3060 tcaaataatc cctcttttta tgcaaatagt atcctgagta atgtcaatca aaattactaa 3120 tagtgtcatt gttctgggta ttctctaggg gagaatggga ggaaataatt ttataataat 3180 aggaaaagtt ataagccatg tatttttatg catttagata gggttgattt tagggagatg 3240 ggatacctga agcaaaatca aagtgtagta tcctgttgtt atgtccctcc tgaagtttgg 3300 tctttgtcgg ggttggggga ggggtgttga tggggacata cccctagttt agggtgggaa 3360 aacattgctg gctccgcttt taggcagtgc ctaaatctat ata 3403 // ID DNA-9-7_NV repbase; DNA; NEM; 200 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-7_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-200 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-200 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-200 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 200 BP; 49 A; 40 C; 57 G; 54 T; 0 other; tagcctcctc cgcaggcaac tcataatgaa aaggacggaa agaatgggtt acctgtggcg 60 aaattgcgga ggagggagac taaggagaag tagagaggga atgcagcgct tccggtttgt 120 cacttccgtt tttttgccac aggaaaccca atcctttttt tttctttttc tggtctttga 180 gatgcctgcg gaggaggcta 200 // ID hAT-2_NV repbase; DNA; NEM; 3864 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-2_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; 8-bp TSDs; KW former NVREP296; hAT-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3864 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3864 RA Kapitonov V.V. and Jurka J.; RT "hAT-2_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 587-587 (2007). XX DR [2] (Consensus) XX CC The genome contains >10 copies that are less than 2% divergent CC from the consensus. The 684-aa transposase is encoded by two CC exons (pos. 607-1711, 1949-2898). The transposase contains the CC ZnF_TTF zinc finger domain (aa positions 50-125). XX FH Key Location/Qualifiers FT CDS join(607..1711,1949..2895) FT /product="hAT-2_NVp" FT /translation="MARAPVCRKEDCSPYDIGLVFDKIASYSPQDKLKFIE FT NVWKPGELFDFPVSIENGKSRKFVLNWLKKYPWLAYSKYYNGVFCLACVCF FT GVQCGRNANKLDKLLKSPLTNWTSAASRFTKHAQGNCEIHKFSMIAIEEFK FT KMMRTDAVPINLQLNNIVQQQIARNREILRSLFKTIIFCGKNNIPLRGLRD FT SDPTNAALAGNFQALLEFRVDSGDQILEQHLENAPRNATYISKTIQNQMIS FT TVGAHILNNLSQEMRDSKYFSVMADEAADIANKENLSVVIRFLDSTKNIRE FT EFIGFYICKEGTTGEAIKDLITAAVVDLGLMMEDCRGQCYDGAGNMAGRLN FT GASSLIRAEHEKAIFVHCMNHQLNLFTATLEDISMNRHKHENTNWNPTSRQ FT DAQSLLNAINFSFIVAIVIVRHILALTKPLTVKLQSKAMDILKAKEELALL FT ISVLTEMSNDIDATHHELYQDAVTIARQVDVQPDMPRVAQRQTHRPNAPAS FT NPEDYYKINLTRVFLDHVLEQLDSRFKDDVFICYKGISIIPSVLIATDDWK FT PNVLEFCNYYRQDMPNYIGLQAELLLWERLWKGRDNRGEVIPDTLRLHWRI FT LTDAYVNIYFMLKILITLPISSASCERSISSLRNLKTYLRSTMTEDRLNGL FT ALMYTHKDMDLDLDRIIDLFAQLHPRRMRMANILT" XX SQ Sequence 3864 BP; 1192 A; 731 C; 743 G; 1198 T; 0 other; cagggttgga tccagggtag tttacgtgag ttccggaaca cactcaaagt ttttcagacc 60 aagttatttt gaacttaaat ggctttttta aaaatactcc gatatcccta gaaactattg 120 gcttgtctgt ggaaatcatt caatctcctg tatttttggt ttttaattaa attaaacacg 180 taaaaagatg ccttatcgtc tttattattc ttatgcgact tcacggagcg ccctggatca 240 cgagctttgg atttgagctt cgatcacttt tcgggaacct tcggaaatcc gtcggataag 300 atcggaaaat attgtcacca atttgcaagc aagggggtgg gtgaggtgtt attatagtta 360 gcactggaac acactcaaaa cctcgcgcga ttggctggaa tttttttcat tgtgttggaa 420 ctcactcaaa accatttttg attggctaac tcacttggaa accaccgcgg aaactatcga 480 caaaagtata aaagggtctg tacctcccct aacggtcttc tttcgtttgc cttcactaga 540 gtctcagtac ttgcatcgga gtttacgaag gaattagtta acaaattgca ctagttttta 600 ctctttatgg ctcgtgctcc tgtctgtcgg aaggaggatt gttctcccta cgacattggc 660 ttagtcttcg acaagatcgc cagctattcg cctcaggaca agttgaaatt catcgaaaat 720 gtatggaaac caggtgagct tttcgatttc ccagtgtcaa tagagaatgg aaaatctcgc 780 aagtttgttt taaactggct aaagaaatat ccatggctag cctactctaa atattacaat 840 ggagtgtttt gcttagcttg tgtttgtttc ggagttcagt gtgggcgaaa cgctaataag 900 ttagacaaat tattgaagtc tcctcttaca aattggactt cggccgcttc gcgctttaca 960 aaacacgcgc aaggaaattg tgaaattcac aaattttcta tgattgctat agaagaattt 1020 aagaaaatga tgcgaacaga cgctgtcccg ataaatctgc agttaaataa catcgttcaa 1080 cagcaaattg ctagaaaccg tgagatcctt aggtcccttt ttaaaacaat tattttctgt 1140 gggaaaaaca atatcccact caggggcttg agggatagtg accccactaa tgctgcccta 1200 gctggtaatt tccaggcact gcttgaattc cgggtagata gtggtgacca aatactggag 1260 cagcacctag aaaatgcacc aagaaatgcc acatacattt caaagaccat ccagaatcaa 1320 atgatatcaa ctgttggtgc tcatatttta aataatttat ctcaagaaat gagagatagt 1380 aaatattttt ctgtaatggc agatgaagcg gctgatatag caaacaaaga aaatctttct 1440 gttgtgatta gatttctcga ctcaaccaaa aacatcagag aagaatttat tggattttat 1500 atttgtaagg agggaacaac aggagaggcc atcaaagacc ttataactgc agctgtagta 1560 gacttaggat tgatgatgga agactgtcgt ggccaatgtt atgatggcgc tggcaatatg 1620 gctggacgac ttaatggagc ctcctcgtta atcagagcag aacatgagaa ggcaattttt 1680 gtccattgca tgaatcacca gctgaatttg tgtattgcca atacctgcca aataccaaat 1740 gtcagaaaca tgatggatgt tgtgcgaaag cttttttaat tttttgacaa ctctcccaag 1800 cgacaagaac atttagaatt caagatcata gaacttttgc aaaaaaacaa aaacaaaaaa 1860 aacacacact gctttaatta atgtatgccg cacccgatgg attgaaagga tagatgctat 1920 ggaccgaata gttgagcttc ccatccagtc acagctacac tagaagatat ctcaatgaac 1980 agacacaagc atgaaaatac caactggaat cctaccagca gacaagatgc ccaatcatta 2040 cttaatgcta tcaacttttc ctttattgtt gctattgtta ttgtcagaca tattttggca 2100 ctaactaagc cacttacagt gaagctgcaa agtaaagcta tggatatcct gaaagctaaa 2160 gaagaacttg ctcttctgat atcagttctc acagaaatga gcaatgacat tgatgccaca 2220 caccatgaac tgtaccagga tgcagtgact atcgcaagac aagtagatgt acaaccagat 2280 atgccaaggg tagctcagag acagacacat agacccaatg ctcctgcttc aaatcctgaa 2340 gactattaca agataaatct gaccagagtt ttcctagacc atgtactcga gcagctcgat 2400 tctagattca aggatgatgt atttatctgc tacaaaggta tttcgatcat accctctgtt 2460 ttgattgcta ctgatgactg gaagcctaat gttttagaat tttgtaacta ttacagacag 2520 gacatgccaa attatatagg tttacaggca gagcttttat tatgggagag attatggaag 2580 gggagggata acagaggaga agtgattcca gacactctta ggctacactg gaggatattg 2640 acagatgcat atgtcaatat ttatttcatg ttaaagatcc tgatcacact tccaatttca 2700 tctgcttctt gtgagagatc catttcatcc cttcgaaatc ttaaaaccta tttgagaagc 2760 acaatgactg aggacagatt gaatgggctg gcactaatgt atacccacaa agacatggat 2820 ttagacctgg acagaataat agatttattt gctcaattgc accctaggag aatgagaatg 2880 gcaaacatat taacttaaat ttttgcacca tctgtttcta gagggcttgt gagttatgtt 2940 ccatctgggt cttaccctta aactgatgga taacagctac agaaactcaa actggtgcct 3000 gtataacttt cttaaaaagt catttctaga tgtttttttt atttagtgat tatttcaatt 3060 tttctattga cactgggatt tcatgttaag ctcaaatggt ttacaaacat ttccctgggc 3120 tccagaagct gcagtttcaa aggataaaaa aggggagtat ttttcaaatt atatatatat 3180 tttataatca tttagtactt ctcattttta taacttgata ttaatgttgt atttttctcc 3240 agagctccag tggctgcagt tcccaaggat gaaaaagggg agtttttttc aaattatatt 3300 ctttttataa tcattcagta cttctctctt ttaaactatg ataacaatgt tggatttttc 3360 tccagagctc cagttactgc agtccccaag gatgaaaaag gggagttttt attcaaatta 3420 tattgtctat aatttgtaca tatcttttgt atatgacata tgatattaat attggatttt 3480 ttttttctta ttatcttgaa aactcctgga ccaaggacca accacaggct tgccatctat 3540 aagtaccatt tttccttctc ctgctcaaag acagttagta ggcagctata ttggacatag 3600 accagtggca ccggtttgga taccagaaat tttttgtaga gcaaggtgtt ccatgtacca 3660 ccttcaacaa aataaaactt tttttgcctt tatgatagca tgtttttttg ttctttttgg 3720 ggtaattaac ttttctgaaa atgcagaaaa tggcatttat agagcttgaa atttcaaatt 3780 ttcttggggg agcatgcccc caaacacccc tattgttggt gtttcggtgg aaactactca 3840 ctcaaaaacc tggatccacc cctg 3864 // ID CR1-13_NV repbase; DNA; NEM; 3221 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-13_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3221 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3221 RA Kapitonov V.V. and Jurka J.; RT "CR1-13_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 390-390 (2007). XX DR [2] (Consensus) XX SQ Sequence 3221 BP; 870 A; 766 C; 699 G; 886 T; 0 other; cggtccgcgg catccgcgag ggtagccaca cgtttttgtg ctctctgtcg tttcgtatat 60 ttgttgctga tatttccggc tttccatgtc cagtacactt atagtgttct accaggcctc 120 gctatggctt caattaatat ctacactgaa tttctggcgt ttttccgacc gaagtccgtt 180 gcatcccctc aacaccaaat ggcgtcatca tgtactaccc gaatctcgta ttcagcgtcg 240 tcgctcaaaa ccatgcggaa atgctcgcct aaactgcgtc tcccggatga tctctgggca 300 aaactgaaga ccgtaggaat ccgaaaacct cctcgttcta aacggaagcc gaaaaagaaa 360 gaaacagcta atcacacatc ggtcgttgac tctccgccct ctgatcgtcc caggaacacc 420 aggatgattc ccgtcaccct cattgccaat ttcagatctc tcctacccaa gatggacgaa 480 cttttttcga tcacggaggt tataagacca ggaataattt gtttaactga gacttggcta 540 aataattcaa taccagattc agcaatcgca ttgcataatt atgtttgcct gaggaaagat 600 cgtgcagtgg gacaatgcgg aggtgtttgc gtgtatatag actcgcacat tccatgtaaa 660 cgactattgg attttgagcg ccctgacgtt gaatcgttat ggatttctct gaggcccttt 720 agactaccaa ggcacgtaac cgagatactc atcggcgtga tttatcatcc accccacctt 780 ggtagtgaag aaaacagaat ccttgtggac cactttcaag agaacaccga tgctttcctg 840 cgcaggcatc ctgaaggttt gatttccatc tgcggagact tcaatccctc aagcactggt 900 atctcgcctc aagttgtgaa acgttgcacg ggtttatcgc aaattgttga ggttctgaca 960 agagactctg gtacgcttga ttggaccctc acaaataaac ctgcattatt cctcccgccc 1020 tctcagcctc caaagatcgg acagagcgat cattatgcag ttctagtaaa gcccaataac 1080 ccactcatgg cacaaaaaac tgagaagaaa tatactacga gacgcgacct tcgtgagagc 1140 agtctgtgct ccctggggag atggttaaca acctttaact gggactgtgt attgaatctg 1200 tcgtctgtca atgaaaaggt tcattcgttt tatgagatct tctgcaaagc gattgaaaca 1260 tttcttcctg caaggagggt gagagtatgc tcatcggata agccctgggt gtcgagtaga 1320 atgaagtcgc tggtgtccag gagacaatcg gcgttcaagg ctcttggcaa agactcagcc 1380 atatttaaaa tgtttcgtaa caaagtgcaa aaagaagcca ggaactgtaa aaggtcctac 1440 ttcaactcga aggtctcttc actcaaggac acaaatgtat caaagtggtg ggctgaggtt 1500 aaagccctta gtggcctcac tgatagatcc gaatggtggc accagcttat tgacagcacc 1560 actcccacta cagatgcatt atgtgagaaa tttaacacat tcctagaaaa tgttacctct 1620 cacttcgccc ccctggactt agattcctgt gcgactaccc tccctgttcc accggatttc 1680 cttgtgtccg atcaccaggc ttacaaggca ctttgctcaa tgaaagcaaa gaagtcgtcg 1740 ggtcctgacc ctataccatc ccgcctatgg aaggagtttg cttacgaact tgcccccgtc 1800 gtggccaaca tatacaacag ctctctgaag gagggacatg tgcccaagcg cctgaagtcc 1860 tcgtacatca cccccacacc caaggtctcg cccccaaagg tgatcgagga agacctgagg 1920 ccgatcacgc tgacatcccc cctagcgaag atcttagaag ggttcaccct ggatctgctt 1980 acatcacaag taattaaaaa acttgacatt aagcagtttt ccgtgagtgg gaagagcacg 2040 acccatgcgt tagtgtatat gcttcatgtt attctagagg cacttgacag aggcaacaat 2100 tatgttagaa ttttcttcgc tgacttcagc aaggggttcg atttagtaga tcaccactcc 2160 ttgctgaacg aaatgcgttc actagatgtc catcctgtta taactagatg ggttttttct 2220 ttcttaacgg ataggtcaca gcgcgtaaga ataggaagct cattgtcttt gcctgtgtcc 2280 cctaatgggg gaatccctca gggaactaag ctagcacctc tgttgttcgc gatattagta 2340 aacaagctag tggcacaatg gccagcacgt ataaaatatg tagatgacac aaccgtattt 2400 gaggtaatcc cgcgttgtag tcctagctac ctacaagtag tcgtaaatga cattagtaac 2460 tttgcatcca gtcgtggcat gcgacttaac ccgaagaaat gcagagaact gagtgttagc 2520 ttccttcaat accaaccatc cctccctggg gagttgtata tttctggttt acctattaag 2580 agagtggata gttacaagat ccttggagtc cacttgagta gtgacctcac gtggaacgtg 2640 catgtagagt acgttattaa gaaggccagc aaacggttat atgccttaag atcactaaaa 2700 aaatccggtg ttcagtctaa tgacttagtc cgcatatact gtgcgttgat aagatcggta 2760 ctagaatatg cagcaccagt gtgggcaggt ctaccagttt tcctatcaga tttgctggaa 2820 gcggtgcaaa ggagagcgat gcgcattatt ttcacgcata ctgattattg cacggctctt 2880 accaatgcag ggctcatgtc cttatctgct cgccgtgata gcctctgtga gagttttgtc 2940 accaaagcga agatatcgcc tcctctaaac tatatcattc ctaaagctac agaagtcaac 3000 catagctact cactccggtc tggctacatg cgtaccgata ggtttcaagg aaatacagac 3060 aggtttaata attttgttag tgtgcgattt cagtaatatt gtgtaaagta gtggcgtgca 3120 tgacccttca ctgtaattca gacttttgtc tgcgagagtg tcgtaataaa ctattattat 3180 tattattatt attattatta ttattattat tattattatt a 3221 // ID Gypsy-66-I_NV repbase; DNA; NEM; 1442 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-66_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66-I_NV; KW Gypsy-66-LTR_NV; Gypsy-66_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1442 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1442 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-66_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 563-563 (2007). XX DR [2] (Consensus) XX SQ Sequence 1442 BP; 429 A; 295 C; 394 G; 324 T; 0 other; aagaatcccc atggcaacgg tagatgaagt cttagagaat ctcaatggga gtaccatgtt 60 ttcaaagctc gatctgcgcc tagggttcca ccagatagag ttagacgagg gctcgcggga 120 tataacaaca tttgctactc acgagctaag aggttaatgt ttggagtaaa ttcagcagat 180 agttaggcaa gtcctggcag ggattgaagg ggttcagaaa atagcagacg acttagtagt 240 acatggtaaa gacaaagaag accatgacag gaacctagag aatgtaatca gacggcttga 300 gcagagaaac cttaccctga atccagacaa gtgttccttt agaatgaaca aagtagtttt 360 catgggtctg ctgttatcta agtatagaat cggtcctacc agtgagagag ttagagcagt 420 gctaaaggcg atcccaccaa cctctgcatc agaggttcgt agcttccttg gcatggtcgg 480 gttcagttca cgtttcatcc ccaactttgc cactattgca gaaccactaa gagcacttac 540 aagacaagga acacccttaa agtgggaggg agaacaacag agttcttttg agtgcctaaa 600 gagagcccta gttgaggctc cagtgttagc ctactttgat agagatgccg acaccagtgt 660 agtcaccgat gccagcccag tcggtctcgg agctgtgctt atccaggaaa aggacggtgt 720 tagcagagca gtatgttatg caagtcgcag cctgagcgac gttgaaaggc gctatagtca 780 aacggagaaa gaagcattag gtatcgtgtg ggggtttgag aggtttaatc tgtacctcca 840 tgggctagag agttttgacc ttgttactga ccatgagcca atgaaggtca tttattccag 900 cagatccagg ccatcagcac gaatcgaaag atgggttcta cgtttccaac cttacaacta 960 cagagtgcgc tacgtcaggt cgaaagacaa catagctgat gcctactaag ggataccgac 1020 atgatgatga gtatgtgcgt gcagttactt tgcaagccgt accagcagcg atgaacatcc 1080 aggagataga gaaagcttcc gctgaggatg tggaactaca ggcagtgagg aaatgcttgg 1140 taagcggaaa ctggactgat gctcccaaac agtacctacc cgtccggaac gagttgacat 1200 acagtaggaa cgtcatcttg cgtggaacta gaatcgtgat accgacagtc ttaaggaaaa 1260 gagttgcaga gcttgtgcat gagggccatt aaggcattgt aaagatgaag gagagactga 1320 ggtcgaaagt ttggtggccg ggcatagacc gggatgccga gaggaagtgt cgctagtgtt 1380 atggatgcca ggtggtggtg aaggaatacc gaacactaac cataaagcct acaaagacgc 1440 cg 1442 // ID DNA-6-4_NV repbase; DNA; NEM; 426 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-6-4_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-6-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-426 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-426 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-426 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 426 BP; 104 A; 106 C; 105 G; 111 T; 0 other; caagggcgtt gggaacagag gttgtttggt aaattgattt agaaatgaca aacaacgaaa 60 ctcccctctg atttggtcga attttgcctt gttttgcgac gcgctctccg tgtttacgta 120 gatacccggt caagttacgt tgcgtaatcc gagctactac cccgtggcgc gcgaacagtc 180 cccgacgcga tatacgaaac cacgttattt ttcttaggtc gggcacgttt cgtatatcgc 240 gtcggggact gttcgcgcgc cacggggtag tagctcggat tacgcaacgt aacttgaccg 300 ggtatctacg taaacacgga gagcgcgtcg caaaacaagg cacaattcga ccaaatcaga 360 ggggagtttc gttgtttgtc atttctaaat caatttacca aacaacctct gttcccaacg 420 cccttg 426 // ID BEL-6-LTR_NV repbase; DNA; NEM; 239 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone BEL-6_NV autonomous LTR DE Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-6-I_NV; KW BEL-6-LTR_NV; BEL-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-239 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-239 RA Kapitonov V.V. and Jurka J.; RT "BEL-6_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 376-376 (2007). XX DR [2] (Consensus) XX SQ Sequence 239 BP; 76 A; 30 C; 65 G; 68 T; 0 other; tgtgttccgg aagttccgtt tctgtgtacc ggaagttgtt aaaattatta gtttatgatc 60 accaattatg taatatgtaa tgagtaatag gatcgggtat cattgtacca ggcacggggt 120 gaactcgtga gagattgtaa gacagattgt agagagattg agagctgatt cgaataaagg 180 gagaagaaag tcggagatcg tgaaaacaga gtgtcgtttg gttcgaaaca ttaccaaca 239 // ID DNA-0-1_NV repbase; DNA; NEM; 308 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-0-1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 0 TSD; KW DNA-0-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-308 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-308 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-308 RA Kapitonov V. and Jurka J.; RT "A family of DNA-0-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Many copies are ~95% identical to the consensus sequence. This CC tranpsoson did not generate target site duplications upon its CC transposition into copies of other transposable elements. CC Originally, it was reported as the NVREP13 unclassified DNA CC transposon [1,2]. XX SQ Sequence 308 BP; 73 A; 71 C; 57 G; 107 T; 0 other; catatcagtc aatcttgttt taaaaactgt cgtttttcta gctcgctcgg tcatttcctt 60 attaggcatt acataccata tttgggagtc cgcttcaatc attttttcgc ttttttatcg 120 ctctagagct ttgtaagtcg agaatttcca cgtaaacttg caggaattcg tgtttactac 180 gattttgctg gcagccatct tggaaatgga gcctagtccc taacgtttta gaatatcaca 240 ggtctcccgc gcgctcgccc caggctcttt tagaccattt agaaaaacga cagccattga 300 ttgatatg 308 // ID L1-4_NV repbase; DNA; NEM; 4021 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone L1-4_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4021 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4021 RA Kapitonov V.V. and Jurka J.; RT "L1-4_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 608-608 (2007). XX DR [2] (Consensus) XX SQ Sequence 4021 BP; 1491 A; 569 C; 778 G; 1183 T; 0 other; gtcagttttt tgcaagaaat acacagctct ccggatttga aggaaaattg gaagaggcaa 60 tttagagggg aaattttcat gtctcatggt agtacagaaa gtaaaggtgg agcaatattg 120 tttggcaaaa atctacaata taaaatattg gaaacaattg ttgatagcgg aggtcgattc 180 cttgtttcgc attgtgaaat tcaagatcaa gaatttatat tgataaattt ttatgcaccc 240 aacgaagaaa aagaccaagt agaggcaatt aagaatttgt atgaaaagat acaaacaata 300 aatgcgtcgg tgaatgcgcc agtaatttgg ggcgaagatt ttaatgttgt tatgaatttg 360 acgttggaaa cgttcggtgg gaaccctgtc cttaaaactc acactataaa aacgcttgaa 420 acgatattgg tagagttaga tctttgtgac atctggcgac taagaaatcc aacaaagaaa 480 agatatacat ggcgaggatg tggacaaggt aaagctagta gaccaggtca gtacattcat 540 agacgattag attatttctt catttctgat ggaatgcaaa cctcagtgga attatatgac 600 ataatccctg caccatcagc tgatcactcg gccataacct tgaaattcaa atcatctaaa 660 gaaaatgcaa ggggtccgtc attttggaaa tttaataact cccttacaga aaaccaagaa 720 tacattgata tgctaacaac taaaataaac gaaataaaga gttctttgac tattgaaggt 780 atagataacc cccaattaag atcggagttg attaaatatg agattcgaaa gtttacaata 840 ggatactcaa aagtattagc aagacaaagg cgttgcgaat acaaagatct agaggaaaaa 900 attaaaagta ttgaacaaat cgaagattgg gaaagtgata aatcactcta ctcggaatat 960 aataagttga agcttgattt ggagaattac agtaatcatg taacacaggg aattataata 1020 aggtcaaaat cacagtggta tgaatttggt gaaaaaagca acgcatactt cctatcactg 1080 gaaaagcgaa ataaaaataa gacgcacatt aagaagctat taatagataa tgaggagatt 1140 acggatttaa aaagtatctt ggcaaaaatt aaacatcatt ttagctcatt atttcaatca 1200 aaaagtagta aaacagaaga gtgcttagaa tttttatcca accttagcac tccaagaata 1260 accgaagaag aaaaaacaaa atgtgaagga aagctcactc taaatgaatg ttttcaaagt 1320 gttaattcaa tggggaatag taaaacacca gggatggatg gtctaactaa agaatttcat 1380 ttagcgttct ggggagatat cggacaagat ttagtaaaat gccttaacga tagttatgac 1440 aaaggccgtc ttacaataac gcaaagaaaa gttcttatca ccctacttga gaaacccaaa 1500 aaagacaaaa gaataataga cgcttggcgc cctatcagtc ttattaacgt tgatgcaaaa 1560 atttgtagca aagctttatg ttctcgaatg aaaaaatgtt taccacgaat aattcactcg 1620 gaccaagcgg cttttgtaga agaaagaacg atcgaggact cagttcgcat ggtagcagat 1680 acaatggaat atattaataa atccaataaa tcgttgattt tgtttgcagc tgacttcgaa 1740 aaagcctttg attctattga acacaatttc atttttgctg tcttgaaaca ctatggattt 1800 ggcagctcat tcgtaaattg gataagggtt attctaaacg aaaacatgag tgcggtcgtt 1860 aataatggtc actgtaccga tttttttccg ttaggtagaa gtactaagca gggagatccc 1920 atttcgccat atctctttat attggtttta gaagtgatgg ctacaatgat cagagaatgc 1980 aaagagatca aaggtttaca aataggaaat caagaaaaga aactagcgtt atacgctgac 2040 gacactacgt tttttttttt tttgggagat actgcttcat taaaaaatac attaattatt 2100 ttaaaacagt ttagttaatt tacatcttta aaaattaatc tgtctaaatc agaggttggc 2160 tggctaggag aagaaccact tcagtagcaa gtgttaggta atttggggct gaaatgggtg 2220 gatttttata aggagggtgt tatggtttta ggggttttct tttcttataa tgaaactttg 2280 tcaaaccaga aaaattttat tcgcgtttta gataatttta aaactgtatt atccatatgg 2340 cgaacacgtg atctgacatt atttgggcga attcaagttg tccgttcttt ggctttgtct 2400 aagttactgt atatatgttc taaattatgt cttccaagtg gctatatacg tgaagtagaa 2460 agcgcggtca aggactttat ctggagggga aggaagccaa aaataaagta tgatactcta 2520 atagggccct acgaaaaggg tggtttaaaa ctgcctgatt tcgcgtcgat tgtcaaggca 2580 agtcggatta aactaatttc tcagctatta aatatagaag aacgatcatg gaaaataata 2640 ccaagttgta ttttgaatga gataggagga attccaattc tcggacggga aaatttcgat 2700 actgaatccc tccccaactc attaccaaat atatataaaa atgctttaaa agaatgggct 2760 gatgtgtttt gccatagtaa ggttgataca ttatctacaa ggtcagttct tgagcagagt 2820 ttatggtgca ataagtttat aagtgttgat aataaactca tacatttaaa cgatttcatc 2880 tcgaaagatg ttctctgtat atgcgatcta tgcaatgata aaggggaact agactggcaa 2940 atagccaaag aaaaggggat cggtgaacac cgttttttag agtggctaag gttaataaaa 3000 gctatccctg ccatatggcg agaaaaactg atggatcaac cagaaacggc taatatggca 3060 agtattagca gtgtaataag ggagaagtat gtaaacttaa aggactcgtg tattaaagcg 3120 gactctataa aaacaaatga tatgatatat gattatctta ttgagagaat actgaagcca 3180 ccgacagctc aaaagaattt agaaaagaga ataaatagta gtagtgaaat aaaatgggaa 3240 actgtttata ctagaattta ttcaagcaca atagatagtt atattagaca ctttcaatac 3300 aaaattctaa acaatgtttt gtttttaaat aagcagttac ataagtttgg cattattcct 3360 gactctagat gttctttttg cttatcattc cctgaaacaa tagaccattt ctttgtagaa 3420 tgtatagaat ccaagaactt atacttcgaa gcaaggcaat ggcttgaaca gtataatatt 3480 tcactgccag aatctaatct tgaaaatatt ttactcggta tcaaggatga aggcccagaa 3540 aatttcataa tcttccttta taaattgtgc ctttttaaac ataaaaatga ctttaaaatc 3600 ccctccttaa tggtcttcca aaactttcta aaacaatacg aaaaaattga attcctagtt 3660 gcaaaaagaa aacgcaagat gtcagcacac taccaaaaat gggaaaatgt tatagaggct 3720 ttaaaaaagt caagttgtta ataaaatgat tgaggatggt atggaatggg aagggtgagg 3780 gctcgggtct tgtttgtgtt gtgtttctgt ttatgttgtg tatatatttg tacgaaaaat 3840 tataatgaat gtattaaaac agaccgttta taaaaaatgt aaacaacaac aactcttgta 3900 aatattgtaa atagtaaaaa acaagcaaaa atataagaat gtaaattttt aaaaaaaata 3960 tgtaaggaaa atgtattagg tacaagggag tgtttgtttt aataaaaaaa ataataaaaa 4020 a 4021 // ID TE-25_NV repbase; DNA; NEM; 591 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-25_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP343; TE-25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-591 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-591 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-591 RA Kapitonov V. and Jurka J.; RT "A family of TE-25_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 591 BP; 188 A; 134 C; 129 G; 140 T; 0 other; tagcctccta cgcgccgctc ttagggacca cgattcccta ggccccacga gcgcctgctc 60 cacagagcgg caaaacgaat tagccattgt ctttacatgg ccaatcacga tcgagcgatt 120 gtttgcgaac aaccaatcaa aacccatgtt agaatgccgc accctgtgtt cccgccaaaa 180 caaaaccttc gaaagtgttt cgatttttcc tttgcaaatg ttgcaataaa atgtcccata 240 aatataaatg gcagaaactc caaagaaaat tgtcgaggca gactataaat gcttcatttg 300 tagcagttta acgacagtgt ctgctggtaa agtaaatgtt tttgggaaaa gctctctaga 360 tctagtcgaa ctgataaaat gttcgacgga agaggatccc agtgtttacg gaaaggaaaa 420 ttccagtctt tttatctgta caaagtgcta caagagactt gcgaaactag aaagagcatt 480 gaaacatgtt gagagtgtaa aacacgagat aaatgaactg ttcacggcaa cgaaacgacg 540 agtgaagcgc ctgagacccg ctgaaagcgc cgttgtggat ccaaagcccg t 591 // ID DNA-6-1_NV repbase; DNA; NEM; 532 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-6-1_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-6-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-532 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-532 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-532 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 532 BP; 162 A; 116 C; 97 G; 157 T; 0 other; cagggtggtg aagagggggt gcccatcacg aatcacgaag ttatttttca ggctttcacg 60 aatcacgaat ttaaaaaaga agctttcacg aatcacggtt ttaacttttg ctttgctcct 120 gaatatatga tttaatatac atagatcaac gctgcggttg atccactcct cagttaaact 180 aacacacaat gacatcaatg tttacttcta cgtataaatg tatgaatcgt gacgcgaaaa 240 aaccgttaca atcgatgcgg agtgattgta ctacagctcc tgtcaagttg agcactgttt 300 tgcagtcgct ctcgttacat gaatttcgtg ttttaattat tctcggcgtc tacggtcaca 360 tttcacgaat ttagccatgc gaaatcacga gtcacgaaag taaaaatacc ccaatcacgg 420 atcacgatag agtactcgat cacgattcac gaatttattt ttaggctttt cacgaatcac 480 gaatttaatt tagggccaat cacgaatcac gaaaatactc ttcaccaccc tg 532 // ID Gypsy-61-I_NV repbase; DNA; NEM; 2657 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-61_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61-I_NV; KW Gypsy-61-LTR_NV; Gypsy-61_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2657 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2657 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-61_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 558-558 (2007). XX DR [2] (Consensus) XX SQ Sequence 2657 BP; 814 A; 579 C; 655 G; 609 T; 0 other; gcagctgaga gcaggaagct gaccaccttc tacaagccaa gtgggctcaa gggatttaag 60 aggctacact ttggggtcaa cagcgcagcc gaaatcttca ataaggaagt tcgaatggtg 120 ggaaaagatg acatcctgat atatggaaca agccaagaag aacacgatcg cgccctgaga 180 catgtcttga agctatggaa agacaacaat ctaacgctca gcctaaagaa gagtagattt 240 aatttgacgg aggttacgtt cttcggcaag gtgttcacga gcgaagatat ctccccagac 300 ctgaactagg tagcagtgct caaggcggcc ggacacccag agtcggttgc agaagtacgt 360 tcattcctat tctttgccgg agcaaacgcc gacttcatgg aaggatttgc ccaggtgacc 420 gcgccactcc gggcactact aaagaaagat gctgagttcc agtggacggc agagtgccaa 480 tggtccttcg agcatgtaaa ggccctactt gtgatggctt acttcgaccc atcgaggaag 540 atacggctaa agacagatgc cggaccgaac ggaatcgcag tcaccctgaa gcaatatgac 600 cccagcacta gaagatggag accggtgacc taccaacaat gagagaagga agcaaaggca 660 gtcgagtggg ggatcctaac caaccatata tatttgtatg gtctaaaata ctgggcgctg 720 cctacgaccc tggcatttgt cagaggactg gtagtaagag gagctagaat agtcgtgcca 780 ggtcctccga gagaaaatgt tttggagtac ttacgcactc gagactatgg ttcccacgca 840 tagacagaat ggtagaagcg cacatccagc attaccaccc gtgccaggtg gtcacagtat 900 tacaagagag atcgagctgc tccgtatgtc ttgcataccc tcggaggcct ggcaagaggt 960 ggcaataacc ttttggggtc ctatacatac gggtgaatac atgctggtgg tggtgtgtaa 1020 gcagccaagg tggagagaga gtttgtaaca ggcacgagcg acagagcagt agtcccgagg 1080 ctggacagaa tatttgcatc actggggatc ctggctacgg gtgggagcga caatggaccg 1140 cagttcaacg gaggagagtt cagggacttc agcaaatacc aaggcttcac ataccagacc 1200 aacacgccac ttaacccaca ggctaacggc gaggcggaac agttcatgag aatagtgaag 1260 aagctttacc agatctcctg acttaccgaa gtaacttcaa acaggaagtg taccattttc 1320 tgcgggccta cagagcaaca ccccactgca ccaccaaggt ggcacctgcg gatatcatgt 1380 ttccgaacaa gactgccgat tcagagagta gactttgaag agctctacca gaaagaccta 1440 ttagaaaaga taaggatgaa gaagcatgca gacaagaagc gacaggtgaa gacataggat 1500 ataaaagtag aagactcggt cctggccctc cgagaggcga agaacatgag aacgcaggcc 1560 tatgagagac agccgctact tgttcagttc agaaggggtt cgcatgtcgt ggcacagaga 1620 gaagacggca gtagtgttac acagagagtg ccatataggt cagaagaaga tgccactcag 1680 tggtccgcgg aaagttctaa ggagaacgat gaaatgggaa atgaatctaa aaacatcaat 1740 gatcgcttac gcggagtcga ccgcctcggt gccagatagc gtggaagcgc ctacggacaa 1800 cacccaaggc ccttggccga ttgaagcctc cagcccagtc aggaaagagt tgaggaggag 1860 cttcagacaa cgtaaagacc cggaaatctt tttgaaggag ataagtctta tttttacctc 1920 aatacatgtc attgaacttt gggattgtgt atataagatg actgcctgtt aatcaggtgg 1980 aacggtttcc atggcaacct ttcttatctg caatttcatt ctaattcatt tatcccagtt 2040 gcatattaaa atgaagagtt gtatgcttga agattactga aattttggcc aacagtgtga 2100 tttccattat atggcgtttt ttaatccctg cctaagctaa agaaaggtta aaatggtctt 2160 taagggacca cactactatc aaactttata cgccttttga taaaagaaca tgcacaattt 2220 ataatgttaa ccttctccgc ttcattgtgg aacaagaact tatttaatta tgcgtagtta 2280 tagtactcaa tacttttaat actcatagta caaaaaagtt aataacatat acaacagttg 2340 ccatggcaac aggaaagtga tgtttaacgt tttgataaga tgaaagtaac taaatcagta 2400 tgtttacaaa gcccatatca tcattttcca gagagaaata acaagtttct gtgattctct 2460 tattgtggcc cttattttgg ggattctagg catgctacaa aaaatggtcc attggtcatg 2520 atggcccacc agtaccttgc gacaacaggt cccaaaatga ccccaagaca tcattctatg 2580 cacctaaacc aaatgtgtag gagatgtgca gcgaaatgca ttttctgggc ccttctgtca 2640 aaatagctcc cagtcta 2657 // ID Gypsy-41-LTR_NV repbase; DNA; NEM; 127 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-41_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41-I_NV; KW Gypsy-41-LTR_NV; Gypsy-41_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-127 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-127 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-41_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 516-516 (2007). XX DR [2] (Consensus) XX SQ Sequence 127 BP; 26 A; 29 C; 34 G; 38 T; 0 other; tgttggtcag cggtctgctg gtcagcggca gaccgtttca ctgtacgatt gaagtccgcc 60 atgttggatt gggaataaat gtacagtcac tcatagttag ctcattgctc gtcctgtgta 120 cacgact 127 // ID DIRS-11_NV repbase; DNA; NEM; 3260 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-11_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3260 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3260 RA Kapitonov V.V. and Jurka J.; RT "DIRS-11_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 405-405 (2007). XX DR [2] (Consensus) XX SQ Sequence 3260 BP; 958 A; 629 C; 618 G; 1055 T; 0 other; tatcaatcaa tggcagtcaa ttttcagcag gaatcaatca ttgactctga agttaataat 60 ttatttacac ttggtgtagt agaatcagtg catgagtttg gggaatgtat ttctcctatt 120 tttgttgtcc ctaaaccaga tggctcgtat agattaattt tcaattacaa acattgtaac 180 aaggctgttc ttttcagaca ctttaagatg gacactttga acacagtcct caatttgatc 240 atacctggag catacatagc ttcacttgac cttaagcatg catattatac aatccctgtt 300 gccccagaac ataggaaatt cttgaaattt catggaatgg gcaactttat gagttcaggg 360 ctttgccaat gggattaacc agttaatcac ctaggatttt tactaaggtg attaagccag 420 tcttagccac tataagacag aaggaccatg tcattagtgg gtatatagat gatttttact 480 tacaagggga tgatatagct gaatgtttga ataacctcaa ggaaacaatt gagcttcttc 540 tgtagcttgg ttttcatgta cacccagaca agtgtgtcct tatgcctact caggaaatca 600 ccttcttggg cttcattatt aattctatca ccatgagcgt gactctttct caacagaaga 660 aaaagaaatt gaaatcactc tgttcacagg ctcttgctgg agagtctttt actatacgct 720 ttattgcaca agtaattggc aagattgtat catctccacc tggtatagag tttggcaagt 780 tacactatcg tgacttggaa cgtatcaaaa tccaggcttt agcaaataat catggtggtt 840 atgaagggat ttttactctc tctgactctc tctgtgcaaa ggaagacttg cgatggtggt 900 acgacaatgt tatggatgct caccgtatca ttagacatcc tgcaatcact tgtacttttc 960 agactgacgc gtgtgacagt ggctggagcg tcaattgtac aacagatact tcattgcagt 1020 ctcagggtct ttggactcga aagcaagctt ctctacatat taatgtaaga gaactttatg 1080 tggtgtacat ttgcttaact attttttgca gtgcaatgat taatgtccat cttcgttttg 1140 agctggataa tgtaacagca gtgtcctatg ttaatcacat gggggtagca ggtcggtaac 1200 ctgtgacaca gtggccaaaa agatttggca gtgatgcatt cccagaaggg tgtggttatc 1260 tgctattcac atacctcggt ccactaatgt cattgcagat aaattatcta ggaaccacca 1320 ctctgatcac gagtggaagc tcaacccaca catttttcaa aaactgtgtg ctgtattctc 1380 tcctttgtct attgatcttt ttgcatctaa tatcaacaca caattaccta ggtatgcttc 1440 atggaaacct gacccactgg ctgttgtcac tgatgcgttc agtttttcgt gggaaaatga 1500 gtacttttat gctttccctc catttagcct gattcccaaa tgtctggaca aaatacaatc 1560 tgaacaggca aagggtgttc tggacaaaat acaatctgaa caggcaaagg gtgttctgga 1620 caaaatacaa tctgaacagg caaagggtgt tctggacaaa atacaatctg aacaggcaaa 1680 gggtgttctg gttgtcccag tgtggcctac tcggatttgg tacacaaagg tcttgctaac 1740 tcatcaaccc aagcttctgt tgtggactta agaaatggag cttttaattt atccacagaa 1800 gaagttagta cacagcatga agggcaagtt aaagctgatg gcatgtccat tgtctggcaa 1860 cattaccgaa agcaaggctt ttcggagcat gttaccagtg tactcctcga ctcatggcaa 1920 tttgctacac agaagcaata tgcggttcat ctcaagaagt gggatgtatt ctgtcgccaa 1980 aggaaggtta atccatattc ccccaattta agtcaggtgt tggaattctt acacacacag 2040 cttcatttta tcgtattctt ctataaatac cactagatca gttttgtcat ctattatttc 2100 agtggataac attcctgtag gccagcatcc tgttgtttgt cgttttctca aaggcgcttt 2160 agagagaaaa cctccttcca aaaaatatta tggtatctgg gatgtgcaaa ccgtacttca 2220 atttctgaag acatatagtc ctaatacatc tttaactctt aaggatatct catttaagct 2280 atgctattag ctctagttag tattcaaaga aaacaaacat tattacaact taatattaac 2340 aagtcgaaac aagatttatg aaaaaaatct caagatgagt atatgtctat tcttagcaat 2400 aatgtgaaac agagtagacc taattatcca gctcctcctg ttattattcc tagatacact 2460 gtggatccag atgtatgtcc atatatttgc ttggaggatt atattgaatg tacaaagagt 2520 ttgagacaag atgatgtact gcttatctcc tttataaagc ctcatcatgc aattggttcc 2580 caaactttgg ctcgatggat taagacagta ttacagttgt ctggtatcga tattgattta 2640 tttaagccac attcaacaag gcatgctgca tcaccagcag cctttcatgc taatgttcct 2700 ttagatgaca ttctaaagaa agcagattgg agtaatgcta atacatttaa acgtttccat 2760 tacaagcatg taactactta gtttatttat tacaagatca ttttcatatt tctgtagaaa 2820 tactatactg ctatacattt tcactattgg tgtcattgaa agtaataaat attgttactg 2880 tacacgttat gcaactcatt gtgtcattac acaagctttg aagtcttcat gtcagtacga 2940 aggttacggt ttatgggata gaatttataa gttaaacgag acttacctgt aagttgaagt 3000 ttgacttgaa ttctatacca taaacattag taaccggagg actgacaccc accacaccct 3060 cccagtgtgg cttatgtttg tccccggtta cttctatttt tgtgcatttc cacaatgagt 3120 gttttgaaca aatgattagt gacgtcacgt tgctcccagt aggctttaag tttgttcttc 3180 atgtcagtcc tccggttact aatgtttatg gtatagaatt caagtcaaac ttcaacttac 3240 aggtaagtct cgtttaactt 3260 // ID DIRS-2_NV repbase; DNA; NEM; 4512 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 04-JUN-2010 (Rel. 15.07, Last updated, Version 2) XX DE Starlet sea anemone DIRS-2_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_NV. XX NM DIRS-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4512 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4512 RA Kapitonov V.V. and Jurka J.; RT "DIRS-2_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 425-425 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 730..3309 FT /product="DIRS-2_NV_1p" FT /note="reverse transcriptase and ribonuclease H." FT /translation="MAVKTADSLLKLSAKADKEFLAELGNLLTLSTDALTI FT LGHASFELSQLRRDDIKPHLNKEYGDLCAASVPVTEWLFGDDLQTKLTHIR FT AANKIGNTASVSTFNRPNSRFNNRPNNRNLFSPSTAGSGSAELAEQQRQVA FT IHPTRETAHGSTTKEVDSVDVVLQSAKVSEFESLVPSLVEVYRLKAKHFLA FT GQLPFYINVWKTLTSDPEILETVAGQHIDFTTIPEQTNPPFQPTWHDSEAE FT LIDTEVHNLVASGVIVETSHEQGEFISPIFLRPKSDGSQRMILNLKQLNKF FT VTYHHFKMDTISTAVDMMKPDCYMCSVDFKSAYYSVAIAPEHQKFLKFSWR FT GKLYQYTCFPNGLAFCPRKFTKLLKPVYSILRQCGHLSVAYIDDSYLQADS FT YELCVENVIDTLTLFNKLGFVVHPEKSVLVPTQKLVFLGFILDSTSMTVSL FT TPDKATKLKETCQLLLLKKRPSIREVAKVLGLMTSSFPGILYGPLHYRYLE FT MDKTQALKTNKGNFDSHMSLSPEAIEDLNWWICSVENECKPVRHGKIQLTM FT ATDASKKGWGCTVQDTPSGGNWTPSEAEYHINYLEIKAVFLALQAFSHIVS FT HKCVKIFVDNTTAVACINQMGTCHSREINALVIQIWTWCIEHDTWITVAHI FT PGKENITADSESRKQRRETEWALDTDIYTATVAKLQIKPDIDLFASRLNFK FT CRVYISYQPDPGAYAVNAFHTSWKNLCFYAFPPFSIIQKVLSKISEDQATG FT ILVAPHWPTQPWWPFLASLLIEPPLILPRKKNTLYLPSSPELRHPLHKTLQ FT LLACPLSGNCTQVKAFQHQLPKLSSRDGGQEHRNSITHISNGGMFTVVNGR FT LIHFRHL" FT CDS 3015..4130 FT /product="DIRS-2_NV_2p" FT /note="tyrosine recombinase." FT /translation="MVAISCKFTYRTTSYFTQKEEHPVLTIQSRAETSTPQ FT DPTVVGLPLVRELHTSQGLSASASEVILQGWRSGTQKQYHSYLKRWNVYCS FT QRKINPLSASVIDGLNFLGVLYEEQLQYSAINTARSALSSVIFPPGGGTFG FT THPLVTRFVRGVYNARPTFPRYQEIWDVAVVLSYLKTLHPPDKLSLMELTM FT KTTMLIALLSGQRCQTLHALDISTMDLTDKHCIFYIQELLKSSRPSKHFGR FT LELKAYENDKRLCVVTIIKEYVERTKLLRGNDSRFLISFQKPHKPISTDTI FT GRWLKKVLAKSGININKYSAHSTRSASMSAGKTANISIKTIMDAAGWSNVG FT TFRTYYDKPITQEPDNFGVNLLHAVDSDV" XX SQ Sequence 4512 BP; 1395 A; 1022 C; 918 G; 1177 T; 0 other; ttctacttcg ccattggtca atagtcgctg cgaagtcacg tgtgagatag cgcgcgcgaa 60 agcaagcagg cagtttttgc gtacggattc gagcaggccg gtcaacgact cgttgaccac 120 atccgaaaag cataaacaat ggcaaaagac gaggaattca acgacgaaat actacaagca 180 gacccagagc gagataaaaa taggcttctt cgccagttat tgacaactat gaacgccaat 240 atgtgcgaaa tgagcgaatc gctcaaagct ctcaaacgtg gcgctaatgg cgaccatgag 300 gcagaccctg ccaaaaaagc cgcaaagacg gcaaatactg cttcgaatgc gaagccagag 360 gggatttctg acactgctaa agatctccta gacttcaaca ataatgagag caaggctgaa 420 gagcctaaag aacagcattc cattcacgaa tcgctgttag atgaccttgc taaatcgctc 480 gacacgaagg agcgaacggc agaggcggtg aatcaaaaat tggctgacgt ggccaacaaa 540 agctggctta agaagctaag cgaagaacag ttaagggaca cagcagacaa atacctgcgt 600 cctaataact gtagccatgt tgtggtcccc aaagtaaacg aagaaatctg gtgaaaatta 660 acacgacaag tgaaaacaaa ggatgtcaaa ttttcccgcc ttcaaaccaa cataaccaag 720 gctggccata tggcagtgaa aactgcggac tccttgctta aattgtcagc caaagctgac 780 aaagagtttc tcgcagagtt gggaaacctt ttaactcttt cgacggatgc tctgacaatt 840 ttagggcatg ccagttttga gctatctcag cttcgacgag atgacataaa gcctcacctt 900 aacaaggaat atggcgacct gtgtgccgca agtgtaccgg tgacagagtg gttgtttggg 960 gatgatttac aaaccaaact aactcacatt cgagctgcta acaaaattgg aaatactgcc 1020 agtgtttcta cattcaacag acccaacagc aggtttaaca acagacctaa taacaggaat 1080 ttgtttagcc cgagcaccgc cggctcaggg tcggcagaac tggcagaaca acaaaggcaa 1140 gtcgccattc atcccacgcg cgaaacagcg cacggatcaa caacaaagga agtagattcc 1200 gtagatgttg ttttacagtc ggctaaggtg agcgaatttg agtcccttgt accgtcactt 1260 gtcgaggtat acaggcttaa agccaaacat tttctagcgg gccaacttcc attttatatt 1320 aatgtgtgga aaacacttac ctctgaccca gaaattttgg aaactgtggc gggacagcac 1380 atcgatttta ccacaattcc tgaacaaact aatcctcctt ttcagccaac atggcatgac 1440 agtgaggcag agttaataga cacagaggtg cacaaccttg ttgcatcagg tgtcatagta 1500 gagactagtc acgaacaggg cgaatttatc tcccctatct ttttgcgacc caaatcagat 1560 ggttcgcaac gcatgatact caatctaaaa caattaaaca aatttgtgac ttaccaccat 1620 tttaaaatgg acactatctc tacagcagtt gacatgatga aacctgactg ttacatgtgc 1680 tcagtggact ttaaatccgc ctattattca gttgcaattg caccagaaca tcaaaaattt 1740 cttaagtttt cttggcgtgg taaactttac cagtacacat gttttccaaa tggcctggct 1800 ttttgcccta gaaaatttac caagctactt aagcctgtat actcgatact tcgacaatgt 1860 ggtcaccttt ctgtggccta tatcgatgat tcctacctgc aggccgacag ctatgaactt 1920 tgtgttgaga atgtcattga tactcttaca ctatttaaca aacttggctt tgttgtacat 1980 ccagaaaagt cagttctagt gcccactcag aaattggttt tccttgggtt tatactagac 2040 tctacatcta tgacagtgtc tctaacacct gataaagcta ccaaacttaa agaaacctgt 2100 cagttactct tgcttaaaaa acggccatca atcagagaag tggctaaagt tctggggctg 2160 atgacttcta gctttccagg catactttat ggcccattac actaccgata tcttgagatg 2220 gacaaaacac aggcccttaa aactaacaag ggtaattttg acagccatat gagcttatca 2280 ccagaggcaa tagaagacct taattggtgg atatgttcag ttgagaacga atgtaaacca 2340 gtccgccatg ggaagataca acttactatg gctactgatg cttcaaaaaa ggggtggggg 2400 tgcacagtgc aggatactcc ctcggggggt aactggaccc catctgaagc agaataccac 2460 ataaactacc ttgagatcaa ggcagtcttt ttggctttac aagcattctc acatattgtc 2520 tctcacaaat gtgtaaaaat ttttgttgat aatacaactg ctgtagcatg tatcaaccaa 2580 atgggaacct gccattctag agagataaat gcacttgtga tacaaatttg gacttggtgc 2640 attgaacatg atacctggat aactgtcgct catattcccg ggaaagaaaa tatcactgca 2700 gatagcgagt ctagaaagca aagaagggaa acagagtggg ctttagacac tgacatatat 2760 acagccacag tggctaaact tcagataaag cctgacattg atctatttgc atcaaggctt 2820 aattttaaat gcagagtcta tatctcatat caacctgacc caggggcata tgctgttaat 2880 gcatttcata cctcctggaa aaacctgtgt ttttatgcat ttcccccatt cagcattatt 2940 cagaaagttc tgagtaaaat ttctgaggac caggcaactg gtatcctagt tgcccctcat 3000 tggccgaccc aaccatggtg gccatttctt gcaagtttac ttatagaacc acctcttatt 3060 ttacccagaa agaagaacac cctgtactta ccatccagtc cagagctgag acatccactc 3120 cacaagaccc tacagttgtt ggcttgcccc ttgtcaggga actgcacaca agtcaaggcc 3180 tttcagcatc agcttccgaa gttatcctcc agggatggag gtcaggaaca cagaaacagt 3240 atcactcata tctcaaacgg tggaatgttt actgtagtca acggaagatt aatccacttt 3300 cggcatctgt gattgatgga ctgaacttcc tgggtgtctt gtacgaggaa cagcttcaat 3360 acagtgctat caatacagct cgttcagcat tatcttcagt tatattccca cctggaggtg 3420 gtacgtttgg gacacaccca ttggtcacaa gatttgtcag aggagtatat aatgcacgcc 3480 caacattccc aagatatcag gaaatatggg atgttgctgt tgttctcagt tacctgaaga 3540 ccctacaccc tccagacaaa ttatccctta tggaactgac aatgaagact acaatgttaa 3600 ttgccttatt gtcgggccag cgttgccaaa ctctacatgc attggatata tccacaatgg 3660 acttaacaga taaacattgt atattttaca tacaggaact tttgaaatcc tcaaggcctt 3720 ccaaacactt cggacgcctg gaacttaaag cgtatgagaa tgacaagcga ttatgtgttg 3780 ttactatcat caaagaatat gttgaaagaa caaagttgtt gaggggcaac gactctcgtt 3840 tccttataag ctttcaaaag ccccataagc caatttccac tgacactatc ggtcgatggc 3900 ttaagaaagt tcttgcaaag tctggtatca acatcaataa gtacagtgcc cacagtacac 3960 gttctgcatc aatgtcagct gggaaaactg caaacatatc cattaagacc ataatggatg 4020 ccgcaggatg gtctaatgta ggaactttca gaacatacta tgacaaacca ataacccaag 4080 agccagataa ttttggtgtt aacctgttac atgcagtgga ctctgatgtt taatgtgata 4140 ataaaaacct tactgagaat tgctcatgac catttgcttt aaaatctcac acgtgacttc 4200 gcagcgacta ttgaccaatg gcgaagtaga atttagaaat taaacgagac ttacctgtaa 4260 ggtgaagttt gattgtaatt ctacgagcta ttgggcagga gcggagaagt cacgtgccct 4320 ccctttttta tttatacaaa tattgtaccc taccctatcc attataatca taaatggcca 4380 ttcgcaactt taaatactgc ctgcttgctt tcgcgcgcgc tatctcacac gtgacttctc 4440 cgctcctgcc caatagctcg tagaattaca atcaaacttc accttacagg taagtctcgt 4500 ttaatttcta aa 4512 // ID Kolobok-N7_NV repbase; DNA; NEM; 326 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N8_NV; Kolobok-N7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-326 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 346-346 (2007). XX DR [1] (Consensus) XX CC Kolobok-N7_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N7_NV transposon CC is characterized by 23-bp TIRs and TTAA target site duplications. XX SQ Sequence 326 BP; 86 A; 64 C; 81 G; 95 T; 0 other; acgcgaaacc gcgctataaa aggagcgtgc ccagggcagc gacaccttca gttgtcgctc 60 agccgtcgag ctgtcaagac gtatcggatt ttcttatcga aatcgaatat ttggttccat 120 ataaactagc aaaggtagaa agaaacatta agttgagaaa gatgaggaag ttatttgggt 180 tttaaaggac gcattcagag ttttattatg aaattttgtg tctatcgctc tgcctaacgg 240 ttagtccgcc atgttggttc tgatttcaaa cttctcgagg tgtgaaaagg gggcgtccct 300 atccctttta tagcgcggtt tcgcgt 326 // ID SINE2-3_NV repbase; DNA; NEM; 387 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone SINE2-3_NV non-autonomous non-LTR DE retrotransposon - consensus. XX KW SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; KW TE3-3_NV; SINE2-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-387 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-387 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-387 RA Kapitonov V. and Jurka J.; RT "A family of SINE2-3_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [3] (Consensus) XX CC The pol-III region was derived from tRNA. This family was CC classified originally as the TE3-3_NV transposable element [1-2]. CC Some copies are 99% identical to each other an flanked by long CC direct repeats (>100-bp). XX SQ Sequence 387 BP; 95 A; 98 C; 97 G; 97 T; 0 other; ggaagcacgg gtggccaagt gtgttagcgc gtcggcctct caccgctgtg gccaaggttc 60 gaatcctggc tcaaactggg gatttttccg ggttcctgcc ttggttcgaa tttgtgtcac 120 aagtgagttg aagttattct cccgtgtttc cagtcttctc ggataaggac actaaaccgg 180 aggtcccgtc tcttcaagct gcactacatt aacctgaacc gaagggacgt aaaagaacca 240 ctggggacgc aataaaccct ctggcagtga ccacccccag tgacagtgct tacaatgctt 300 actaacaata cactcaaggg ggtacttgat ttagagccta gctctgttgt gccttccgca 360 ccagtataac tggtggaaat agaataa 387 // ID hAT1-2N1_NV repbase; DNA; NEM; 627 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE hAT1-2N1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; 8-bp TSD; hAT1-2N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-627 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-627 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-627 RA Kapitonov V. and Jurka J.; RT "A family of hAT1-2N1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC This non-autonomous family is deletion deriavate of the CC autonomous hAT1-2_NV. Originally, it was reported as the NVREP212 CC unclassified DNA transposon [1,2]. XX SQ Sequence 627 BP; 210 A; 81 C; 122 G; 214 T; 0 other; taggcctaga tacataattc cggatttttt ttaggatttt tagagtcaaa cgggattttt 60 agaaaatcta aagattttta gaaaatttca ggattttaag aaaattattt agggttttag 120 gataaaattc ctaccaaata ctgccgattt tcggtagaaa tgtgattctt tcaactaaac 180 cgatcgtcaa taacgttgtc aataaccttg cttggctatt tagtcactgt catacaaaaa 240 gtaccggtca gcggctttgg ccatattccc agaatgcctt gttggcttgt ttgcttcact 300 ggtaggagag tcagtattta gaagttagtt tagtttgtaa aacatgtgta aatcgtggaa 360 agttatttct ttcgatgcga ataatgctga attgcgcatt tatacataca caataaataa 420 aaaaacacaa cataaagata tatttcttat aattaaggga ggaatggcat atttatggaa 480 gaaaaaaaaa agaaaattcg agatttttag ggatttttag gagaaatcag gatttttaga 540 gacaaattcg ggatttttag acatttttgg gagaaacttc cggaaagatt tttagaccat 600 ttttcgggag ttatgtatct aggccta 627 // ID Harbinger-N22_NV repbase; DNA; NEM; 1015 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N22_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TwA TSD; KW NVREP23; Harbinger-N22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1015 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1015 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1015 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N22_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP23 unclassified CC DNA transposon [1,2]. XX SQ Sequence 1015 BP; 297 A; 210 C; 187 G; 321 T; 0 other; gggagtgttc attaaataca ccgagggggg gagggaagat ttttactcaa gacaccttaa 60 aatttcggag cccccctttc gttgtaaaca ttttttcggt gccccccctt tcagaacccc 120 aaaattttca gagccccccc cccttacgac ctcaataaac aaaaaaggcc ttaaatctgg 180 aaaatgaata ctgcgaagtt gccctccttg tccgagttga tgatccagtc aagttcatca 240 ttatttcaga gtccaacaca gggacggatc tagcttttta ccttcgtagc gattttggaa 300 tgaacagaca tgaaaataat aataaaaaag gcagcccaag gggggaaggt ggggggttga 360 ttcaagtcag caggattttt ttctctcatg atcaaaaggc ggtaattctt ttaggcatac 420 ttcatatttt tttgcatgta aaatcatgtt aaatggtgca gggatttttt caatcagttg 480 tttgcttttc aaaatccccc cccccctcaa aagtcaaatg gtccgcccct aggacgcctg 540 tgaaggaata tacatttgta tatatttgtt tttgttaaga atatttttct gtaaaaaagg 600 gataatgtcc aacgtaaaaa aaactgtatg tatatcgttt tggggatttg catgctccac 660 cactgtttag aagtttattt caatttgttc ctgttattct gataataaac tgtatcggta 720 aatccaactg ttatatactg gaagtatcta tattatggtt tataaagaca gttataaaga 780 attattaaat acatttgtca ttaggcttaa tatttaatct gtatttgtgc tacaaactag 840 atcatatcag taaaatatta aagctgaaaa gtatggctcc taaaaaattc agagcccccc 900 ctttagagga cgggtttttt tcggagcccc cccccctttt ggtggctaaa aatttcggag 960 cgcccccccc caatatcttc cctcccccct cttggtgtat ttaatgaaca ctccc 1015 // ID MSAT-5_NV repbase; DNA; NEM; 143 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE MSAT-5_NV non-autonomous DNA transposon - consensus. XX KW MSAT; Satellite; Simple Repeat; minisatellite; NVREP163; KW MSAT-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-143 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-143 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-143 RA Kapitonov V. and Jurka J.; RT "A family of MSAT-5_NV minsatellite DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [3] (Consensus) XX CC This unit forms arrays of minisatellite-like DNA. Sometimes, CC these arrays form inverted structures. It is very likely that CC this minisatellite constitute an internal part of some DNA CC transposon. XX SQ Sequence 143 BP; 27 A; 44 C; 28 G; 44 T; 0 other; catgtgtact tttgtcaccc accctcccct cccacaaaga actaaattgg tcagtgtgtt 60 cccccttgtc tcccacggac tcgtattcgt aacgtcccta tatgtcaggc gctcagttgc 120 ttgttatgag cgtccgtata ggt 143 // ID TE-18_NV repbase; DNA; NEM; 855 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-18_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP127; TE-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-855 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-855 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-855 RA Kapitonov V. and Jurka J.; RT "A family of TE-18_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~90% identical to the consensus. It was reported CC originally as the unclassified NVREP127 transposable element CC [1,2]. XX SQ Sequence 855 BP; 254 A; 172 C; 152 G; 268 T; 9 other; gatcactgcc actcgaccaa tcagcgccct ccatttgaac cccctctcat agtaattaag 60 gtgtcaagcg gcgagggcat tgaacaatag ggaattagtg gggaatgtag ttagtaatta 120 gtggttatct actwagtgat tagtattcct gagttgcamc tttattttga ttgttttccg 180 gaggaaaaca atctacaagc gggaataatc actaagtaga tgactactaa atattactaa 240 ctacaaacct cactgaaatg tccctgttat tcaaaatcct cmactgcttc acatcctaga 300 gaaaagaaaa aagaaagcaa aawtacaatg ctaattgtgt ttactaatat caaagttatt 360 cacaaatatt tcaacatagc tcagcgatgg aagcaaagaa aaacacctga agacctcggt 420 ttatcctttt cttctcaagt ctkcagagcg tactttttcg tgtttttctt tgcttacttt 480 tcgccgwatg gtttttaaaa ccgcgcgctt tcttttcckg ggacggaaaa atcaagcgct 540 cctgcttcga gtcttgcagc gatgactaga atttcaacag agcgagaaat ctagttttat 600 tcgcacacaa ttgacctgtc agtattgcct aatgatgttg ataacttgtt gamaaccata 660 caatggcctt cgacagtaag atattatttt aattgtttta catttaatga tgttgatttg 720 ccagtgacat ctwgtatgaa agcatttcga aatgtctcgt ggcagtgtta attttctaag 780 aaagcgcact cgctgatctt tgttaattcg tgccctaaat cccatagaac actcgtgtcc 840 attatctaac cctta 855 // ID Gypsy-47-LTR_NV repbase; DNA; NEM; 141 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-47_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47-I_NV; KW Gypsy-47-LTR_NV; Gypsy-47_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-141 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-141 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-47_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 528-528 (2007). XX DR [2] (Consensus) XX SQ Sequence 141 BP; 30 A; 30 C; 36 G; 45 T; 0 other; tgtagtattc ggtatacctg tgtagcgccc gcattgcatg ttggggcacg tgtttgtaac 60 tgagttgagt gagtcgccat cttgaataaa acgttgagtt tgtatactcg gttttccccc 120 tcactacgag cggatactac a 141 // ID DNA-9-23B_NV repbase; DNA; NEM; 1272 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-23B_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW DNA-9-23B_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1272 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-23B_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-FEB-2011). XX DR [1] (Consensus) XX CC Codes for remnants of the ATpase from RecQ helicase. XX SQ Sequence 1272 BP; 320 A; 291 C; 284 G; 375 T; 2 other; tagcctacct gtaggctttg atagtttttc cggcacgaaa accccgaaaa cacggagttc 60 gcataccacg gccgccatct tggataacgc gctccgcagg gggaggggga gaaaaatgcg 120 cggggcaggg ggagggggag aaaagaacgc ctacaggatg tctcgccttt ttcgttcata 180 gatttcaaac ttcgtccgta tacggacgaa gcgatctgat tggcttatga cctcccatca 240 ctcatcactc catagcttta tcacttcgcg ctttcagtgc tgattcaacg tggcgattac 300 cgaggaagcg atccaaaaag ctctaaacat tctttattcg aaaggcaaat ccgttatttt 360 aagacaagag caggaggcag ctgtgaaagc cttgttagaa gmcaaagatg tgatggctgt 420 gttgccgaca gggttcggta aaagcatgat ttttaccgtt tctgagattg cctctcgaga 480 gaaacatcgc acaaactctt ccgttctaag taatatgctc actaagagca taatcagctt 540 ctgcagcaga ctagtggtat tcttgaagat ttaggaaccg ccggcgttta tctactgttc 600 ggctacggtt cgttatttct attcttgttt gtgagtgcga cttttaattc gaaataaaac 660 gtatgtgttc ttctaataat ccttccgcgt ggcttgcaga cccgctccgt taagtttgtt 720 gcacgaagca cagaaaccca aattcctcac caactcccgg cgagggattt cttgtcgtaa 780 tattcttgtg ttcttgcaga ctctgtataa gttttcccac gatggcctac caaaggtctg 840 tatttaattg aaaatttaaa cgggcaaagc ctacaacagt cgtttgcaag taattcatca 900 ktcttaggtg ctatttttac gttttagggg agattagcta catcttgcat tattaaatat 960 atacattttg ttacctttgt gcagcgctaa gattttagct ctatctacgt gagtttgttt 1020 tgttttgaat tcgagaatca aatctgataa tcgacaacga ttatgtgaca tgttatttag 1080 ctgtcaactt tccgtcacgt gttatattag gggcgtcgaa cgaaaaaggc gagacatcct 1140 gtaggcgttc ttttccccct ctccccctcc ccgcacattt ttcctccccc tccccctgcg 1200 gagcgcgtta tccaagatgg cggccgtggg gttttcgtgc cggaaaaact atcaaagcct 1260 acaggtaggc ta 1272 // ID Penelope-10_NV repbase; DNA; NEM; 461 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-10_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-10_NV. XX NM Penelope-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-461 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-461 RA Kapitonov V.V. and Jurka J.; RT "Penelope-10_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 630-630 (2007). XX DR [2] (Consensus) XX CC It is only a 3' terminal part of the retrotransposon. XX SQ Sequence 461 BP; 160 A; 106 C; 89 G; 106 T; 0 other; cgaaggtagc gttgccacgt atgtgggacc catcgctgat agttttaaaa ccaggtacaa 60 caaccacacc acgtctttca ataacgaagg aaagaaacaa gcaacagcat taagaaaaca 120 catttgggcg cttaaagacg ctaaaaaacc ctactcgatc cctactggag cgtcctggca 180 cgtgcccccg catacgacaa tagatccaaa aggtgcaacc tctgcataac agagaagtat 240 tgtatattat gacgttcaag tgaatgctca ttaaacaaac gtaatgaact cgcaagtgca 300 tgccgccatg tacgaaaatt cttgttaagc caacataaat aggcgaacgc tccttgtaca 360 attgcacctg aaaagagaca aataaagctg tctctaaaca ggcctgtcgt gcctggtaaa 420 aatgtgaaat gtatttttct ttatacaaca attctcgata g 461 // ID Helitron-N7_NV repbase; DNA; NEM; 3012 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N7_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N7_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3012 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3012 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N7_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 603-603 (2007). XX DR [2] (Consensus) XX SQ Sequence 3012 BP; 991 A; 475 C; 524 G; 1022 T; 0 other; tagcggagcc gcgcgcggag ccccataggt atagaaatgg tctataacta ggcgactcag 60 tttttgtggt caatgacgtc attgtcacaa gctgccatcc atccagccag ccagccgcga 120 tctgcctcgg cacaggcctc cagagcgcgc aaaacaatat ggcggatgag tatttctgcc 180 cctctcaaaa acacacgaaa actgactgca gaaaagccaa gaattgtcga aaaagaagtg 240 cttgaaaaaa atcattcgtg ggaatgctaa ccacggatat gaacttgtct aattatgtgc 300 aaaagactgt gtaaaagcat ggttgaaagt tttgaagagt caagtcttgt gctcgagtca 360 aggtcagctg aaatgtcaga gtaagccaca agataaagaa agaaaaaaca agctaatttt 420 atggacacct tctccgacaa gtgctcctat gtatttgttc ttgcactggc agacgtaggt 480 aagttagcgt attgtattaa agtacttagc ggaacgatct ttcggagttg ttttgttttc 540 aaactttgaa cacctttttc attgttgaat ttaatttata ctttaagtac ttacctcagg 600 gaataaatat tctaggctgt atttatcaaa ttcgatctct aaatctgcca ttcaccatct 660 atcataggaa aattataact actattcatg aatgaattga atataagtta ccagagctgt 720 caactctgtc acaagatttt ggacctcatc ataaacctaa tttttgtgag aatgttcata 780 cattctctgt attcatccgc attggctctc ttgttttttt ttttcacata tttgctgtat 840 ttcatccgat ttcacaagat ttctgtccaa gttgggttga cagctatgat atactagaaa 900 taaaaccaaa agtgattttt aattcatttc aatgaatgat tggtcaaatt ctcacaaaga 960 tgagcaaggc ttaaatgaat tacttgggta aactccagct ttctttggag aaagaaatag 1020 agaactggtt tcctaaaacc ttaaagaaat tgagagctgg tctcctaaaa ccctaagtat 1080 tagtaatttg tgaaaaacaa catatatttg ataaacactt gaaatttaaa tcgactattc 1140 tggaattctg ttttgatttt aaaaaaaggt gcacatacat attaggacct tgaggatctg 1200 ttattaccta aaaaatatgc cttgttttta taccacctac aatattttca ataaccctgg 1260 gtacctcaat gttttcttac aaaccttaaa aaactttttt tttctcatgt cacaatataa 1320 tgtggtccaa aagtaaaatt caggtttcat agaaagccaa gacagctttt ttgtagagga 1380 gcaatttgct caaaagcaat ggttttttcc ctctgcagct tctcctataa aagctctttc 1440 aacctctggc tcatcagatc atagagcttt atgagacagc aaagttcata tgttcatttt 1500 ctgtaatggg tatcatttta gaaaatttta gttgggacta tttttagttt taggttttat 1560 gaattaggtt tttgtggtat aatatttgta tcctattttt agttttaggt tttatgaatt 1620 aggtttttgt ggtataatat ttgtatcgta aggaaattac cagttttttt cttaaatgct 1680 tttctccaaa cttcttcagg ttaatctcag ccagagattc tgaaatcaag ctgagacaca 1740 agctgctggc taagaggcat gacccagggc aggatgtaca tataaggcat tggtatttaa 1800 tgtaggtcac caaaaataaa cacatataaa gtaacaaaaa gtaagataat attttaatgg 1860 aaaaattgtt ctaaaaaaat gaaccagagt tataaaagta aaaaaaccta gtttttttcc 1920 aagttagcct gacaggttct tgtataatgt gtggttagtg acatttaggc tatttaggtt 1980 cataaatagt ctcttgctat tacaatgact catggtaaag taattgaggt agtaagttaa 2040 tcataaaaaa acaaaaacag gtctcctata tgatccctta agatcatatt taaaactatt 2100 tagaaatcaa ttttcctatt tcaacctatt tcaaattata ggctaaatag atgcttataa 2160 aaaggattct aatttgataa ttttaggtta acaggttcat tctaggttct tatatgtggt 2220 tcttaactgt ataataaaat aatgtactca gaattttttc aaatatgttg gagtgctttt 2280 aatccaccct tagcaaagtt acattctaaa gcacaagaga gaaggttaat aaagatattt 2340 ttccaatatt tgaattgctt actttaaaac ttacacaaga gaaagaaaat gataaagccc 2400 tatctttgca agttaagtaa agtaatttaa agaagtaaaa ggaattggga cagtacaggc 2460 agggaatgag tacttttacc tcaaatccac tatgatagtg tgatttgctg atatacttat 2520 taatgtatag gaatttgata tgtatttgtt tattgttttt aattttgaag agaataaaat 2580 agcacccagt tttttgtgag gaactttaat tgatcctcat tttaaaataa atatgacctc 2640 ccttcacacc tgaaagcctt ccctgttaat caaagcataa atttattttg ctaattttgc 2700 tgtatcagtt gtctatcaag tatagtttag ttaatgatat ccttagtaat gtcaataaat 2760 acttttttta cctagaacaa aaaacatatt tgttctaggt attccctagg aggattggga 2820 ggacaccttt taataataat tgcagtattt atagaacatg caatctttat atgttttaca 2880 tatggtgccg tttttgtggg tggtggaaca tgatgcataa tgaaagtgca gggaaggggg 2940 gttctacaca agtttatgct gaaaaaagtc atgctggctc cgcttttagg cagtgcctaa 3000 atctatatat ta 3012 // ID Harbinger-N21_NV repbase; DNA; NEM; 141 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N21_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TwA TSD; NVREP17; Harbinger-N21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-141 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-141 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-141 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N21_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally was reported as the unclassified NVREP17 DNA CC transposon [1,2]. Copies are usually flanked by the TwA target CC site duplications. The consensus sequence is a palindrome. XX SQ Sequence 141 BP; 40 A; 28 C; 28 G; 45 T; 0 other; ggctaagttc aaacgtcgta ttatccatga gccgtattca atgcaaatgc atgcaaatga 60 atcgagtcga ttgtttcatc ttcatttgca tgcatttgca ttgaatacgg ctcatggata 120 atacgacgtt tgaacttagc c 141 // ID BEL-13-LTR_NV repbase; DNA; NEM; 347 BP. XX AC . XX DT 24-MAR-2011 (Rel. 16.03, Created) DT 24-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR of the BEL-13_NV autonomous LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP533; KW BEL-13_NV; BEL-13-I_NV; BEL-13-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 74-339 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 74-339 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-347 RA Kapitonov V. and Jurka J.; RT "A family of BEL-13_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 347 BP; 82 A; 65 C; 68 G; 132 T; 0 other; tgttacagcg aaactctgaa tttttgtgtt acaagatgtt ttgttaatat gtttgtacac 60 cctttgttcg tcgccggttt agtagtttct cgttaacaca tcgttctatt gttattagag 120 tcctttgtct aagtcatgct aattttcgat aagtacacgt aagcattctg tatattagtc 180 actgcagtta agatttattt ggttcgtcct ctctgtcgtc tactcgtctg tatattgtca 240 cctttgagta ctatgtcacc agagtgacgc gccgtcaatg tggagaataa aatgaactag 300 aagttcacat ggttatttta tattcacggc gcgtcactct ggtgaca 347 // ID Gypsy-59-I_NV repbase; DNA; NEM; 3738 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-59_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59-I_NV; KW Gypsy-59-LTR_NV; Gypsy-59_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3738 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3738 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-59_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 553-553 (2007). XX DR [2] (Consensus) XX SQ Sequence 3738 BP; 1169 A; 796 C; 883 G; 890 T; 0 other; tggtgtcaag aagttggtga aatcaccgaa agaacccaac tatggagaaa gatttcaagc 60 catccccaga gctaagcctt cagtgcaacc tgccgaaaac tggaggatgt ggcgacagcg 120 ttttaggctg tatttggcgg ccacggagtc ggacatgtag gcggatggca taaagaatgc 180 tcgactcctc tcagcgattg gacttggaca accgaggaag acaagactaa gtacaaagac 240 gtcatggata aattccagcg cgagctcgca ggtttgaaac gtgtggtgtt ttcgagatac 300 cgatcaattg ccatttgaca agtacaacca atttgagact attgtcacgg tcctgtgagg 360 cagataacat gataagagac aatattgttt tctctactaa agaaaaaaca ctgaaagaaa 420 gacttgagag aaactggcac aagtttacag acagttattg ctctgtgtcg ttctgccgaa 480 atcacaaaga gagaaattca accaatgcat gcagctagat gtgatgcaag tcctagcacc 540 gagtcaattg tattaagtcc gatccacaga gtcccaaagt gaatgatagc ttacacaaac 600 aacgtgaaaa gtgcaggcgc tgcctcaatc aacatgcacc tcggagatgt ccagcctggg 660 gtaagatctg cagcaaatgt aatggcccaa atcacttttc tagagcatgc caaacaaagg 720 gaacatgaag taacagagaa ggaaaatgag gaggaagatg acttttactt tgatagtatt 780 tatgttggta acattgatgc ccctagccct aaagattcag cttggttttc tgtcataaat 840 gtagaggggt ctcctatttt aaacttaaaa gttgacattg gatacaggag cagctataaa 900 tctcctccca cgcaaaatgt ttatcaagtt gaaaaacaaa ctccagctac aaaagtcaaa 960 agcaaagctt acagccaatg gaggtcatga catagcttat gaaggcaagg ttttactgca 1020 atgtgcaacg ctggaacgct gtgggcaatg aacagacact gcagttttac atcacgaaag 1080 caaaagcccc tccaatacta ggcctgcaag cttgctctgc cctgggcctg atacagagga 1140 gtgtttgtaa tgattcagtg cctgttgata cagtgaatga tcccttaacc ttgcaatctg 1200 tcaagtctga atttcagaat gtgtttgagg ggattgggca agtttccaga accttacaag 1260 atttcaacat gaccagatgt ggagcccgta atacagccgc ccacagagtg cccacgagtc 1320 tgcatgctcg gctaaaaggc aagctagact aactggaaag agatgacatt attgccaaag 1380 tggatggccc aacggactgg gtgcacaaca ttgtaagtgt tgaaaaggaa aatagagatt 1440 ctcggatatg tcttgatccg aaggacctga atcagcaatt aggtgtgaac acttccagat 1500 aactacctac aaggatgtta ttagccgcct cggaggaaag cgttacttca caatataaga 1560 tcagaaagat tccttctggc aggtggagct ggatgaagat agctccagtc tgtgtacctt 1620 caacaagccc ttctccaggt atcgtttcct tcgaatgcta tttggcatca gctttgccag 1680 tgaggttcta caaagaaaac ctacaaagca ttcggcgaca ttgaaaatgt gaatgttatt 1740 gctgatgata tgatcattgc agcagcctct gaggaagaga aagaccagat catgctcagg 1800 gttttagaga gagcaagaga aaaaaacatc aagttcaacc cctgtaagat ccagttcaag 1860 aagggggaga tcttctatac tggcaatgtt ctgacggaac atggtgtaag accagacaag 1920 gccaaggtca cagcgattgt gaatatggca gtaccggcaa gcaaggatgt aagacgtcta 1980 acaggtatgt tgaattactt atcaccttac atactagaca agtctgctgt caccgctcca 2040 atcagagagc ttcttaagaa ggagacacaa ttcagttggc tgcctgagca tgaaagggct 2100 tttaacacag ttaagcaaat cttaagtgaa gagcccttac tgaagttgta tgactagagt 2160 aaaaatgtaa ccattcagtg tgatgcctcg ttcagggctc ttgcagcatg tctcatgcaa 2220 gcaggcaagc cggtagcgta tgcctctaga ttcctcactg agacagaaca gaagtggttc 2280 cagatagaga acgaacttct gacaatcgtg tttgcagcag aacgctttca acagtacata 2340 tatggcaagg aagtagaagt tgagagtgac caaaagccac tagaaaccat cctggataag 2400 ccaatcgaga acgcttctcc tcggatacaa ctcgtgctgc ttcgcttgct aagatacaat 2460 taagatgtga ggtatgtccc aagaacaagg ctctatatag ctaacacaat ctcaagggct 2520 taaactaagc aagtcaaagg acccgatgac gcacaaatac ccgagatgga attgaggatc 2580 cattgacttc taaagagcct cccgatgagt gaaaagaggc tgacacagct acagaaagca 2640 tctgagggag atcaaacatt ctgtaggctg aaagctgcta tcgagcaagg ttggccagcc 2700 caccggaaga gtacccaccc aagcatcata ttgggaaatc cgtgatgagc tgcatgtcgc 2760 tgagcacctg atatttagag atgaaaaaaa aaacatcttt gccaggcacg gcattccaga 2820 ttatatgatt gctgttaaca tgccgtttgc aagtgctgag atgaggacat ttgcaagaga 2880 atgggacttc cagatcacaa cgtccagccc aaagtaccca caatcaaatg gacaaagcga 2940 gcggatgatc ggaacagtaa agcagctcat gaggaaagca cacgaggaag gtaaagacat 3000 taatctggca ctacttgaat atcgcaatac acctgtaaca ggtctcaagt attcacctgc 3060 acaactactc atgagtcgga tgctaaagga taaattacct gtcacttgta ggctaaagtt 3120 gctgagaatg cttatgtgga gctgaatgca cggcagcaga aacaaaagcc atattatgac 3180 ccctccctag attggacgtt ggggattgcg tgagggtaca actctcacgc cgtgactgga 3240 cacctgcaat cgtgacagac ctacattcag ctccacgttc atacatggtc acaacgtaaa 3300 atggtcgtgt gctccgcagg aaccgggggg tcatgaaccg taccgccgcc agtggtcatg 3360 gttgccccag aggacacacc tgctgcttca agcggctttt gtgagcagtc gtctactgca 3420 gaaggaccac ccaaacaggt tgaggctcct gatccgcagt cttcaccaga tcaccagact 3480 cagagaagct acaagagagt ccgatgaagg tatctatacg tttgagaaga cagccatttt 3540 ggatggcaga ctatgttact ttatgtccgc gaactgtgag tcgtaacaat caacacaaac 3600 tgctttgaca tttgttattg tttattgtct attcatcacg tttaatttgt ttgatgaaca 3660 attcaggagt ttgatccttt attttgattg gatattgatt tagatagtct gcgatgcttt 3720 tcctgtacaa aaggggga 3738 // ID MSAT2-MAR1_NV repbase; DNA; NEM; 54 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone MSAT2-MAR1_NV minisatellite DNA - consensus. XX KW MSAT; Satellite; Simple Repeat; MSAT2-MAR1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-54 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-54 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-54 RA Kapitonov V. and Jurka J.; RT "Families of minisatellite DNA derived from the Mariner-1_NV RT transposon in th starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 54 BP; 19 A; 8 C; 12 G; 15 T; 0 other; tatgtaactg taaataagac aagcaagggt gtccattata tagaggttcc actg 54 // ID Kolobok-N3_NV repbase; DNA; NEM; 226 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former CON4; Kolobok-N3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-226 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 362-362 (2007). XX DR [1] (Consensus) XX CC Kolobok-N3_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N3_NV transposon CC is characterized by 16-bp TIRs (3 mismatches) and TTAA target CC site duplications. This family is composed of several hundred CC elements that have been transposed continuously for a very long CC time: the youngest and oldest elements are ~6% and 30% divergent CC from the consensus sequence. XX SQ Sequence 226 BP; 65 A; 37 C; 50 G; 74 T; 0 other; agaatgtcga tcacccactc ctttgttatt gtttatcatt gaaaatacag cggtttattc 60 gcaaggaaac ttcaaaataa caatctacga atgaagtctg atatgttatt gacgatattt 120 gattgaaaat atcttggtta cttgcttgaa ttagccgatg gaaatggatg ctttgtgtga 180 ctcgccattg agcgggagca taaaatggcg gcgtgattgg ccttct 226 // ID DIRS-32_NV repbase; DNA; NEM; 1518 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-32_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-32_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1518 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1518 RA Kapitonov V.V. and Jurka J.; RT "DIRS-32_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 428-428 (2007). XX DR [2] (Consensus) XX SQ Sequence 1518 BP; 330 A; 429 C; 304 G; 455 T; 0 other; tggtcgtgtc ccgaagaagg actccggaaa atctcgccct atcaccgatt gcagtcgcct 60 acatggccac gctctcaacg attttatcgg cgcgttattg atagtgttaa gaagcttaga 120 agttcttctc atcgctgtcg ccttaactct cagtttcgcg ctaacatatc ctggtggcag 180 gaatttcttg tcacatttaa tggtcgctct atgatgctag actttagcac gcctatatac 240 tttcaaactg acgcatccct tcttgggttt ggcgcggttt gttccgatga ctggtttgca 300 ggagcatgga ctcccaattc tcttgttaca cattaccagt cgctacaccc tcacaactgg 360 tgctctgctg gtcacgcaat tgaccctgcg ctacgctcaa atattaaact atttagaatt 420 gttcccagtc ctcattgccg ctaaggccat ggcattcgta aataagggga cttgcaaaca 480 cccatccgcc atgtcttggc ttcgtgaact attctagcta agtgtgcgct acaactttca 540 cctattttct cgacatttgc ctggtcacat taactgttct gcggacagac taagtcgttt 600 actttatgat tcttatggcg tctcttcgct tcctttccag gatacctgta ccaactcgac 660 gaacgagcca aattagtctc cgccgccgca tatgcggcct ctacgttagg cacacgacga 720 tctcagtggc gtgtctacct acgattttgt tcagcatacg gattggttcc cattcccgct 780 caacaccgaa cgattgtcag gtttcttatt catctgtcta cttactgcaa atattctaat 840 attactaact atttgtctgc aatcaatatc cttcatcgac attttggtta ccccgtaacc 900 tttcaaaaac tcttcgccat taaacttatt actcgtggcc tgcgtcgcat tttgggcgac 960 gcacgtgagc agaaattgcc gattacaccg gatatactcc atcgcattca ccccctcctg 1020 tctgacgatg cggattccgg tttcttggct gctatccttg tcggatttta cacctttttc 1080 cgtaaatcaa acctcgttcc aaagtctaca aaatcgtatg atccctcgag caatttgtca 1140 cggtcagaca tttctattcg cgcgtgggga atggttattt gtgtgcgttg gtccaaaacc 1200 atccagttta aacagcgccg tttactgatt cctgttgttc gtctcacagc gggccatcca 1260 ctgtgtccag tccaggccta tgagcgccac ttacgttgct atccggcccc accatcctcg 1320 cctgcattcc tacagtcttc caagggcgct agtgcaccaa ttactcatga atcacttagt 1380 tcgaaattac gaagggccct tactgccacc ggcttgaacg cttccatgta ctctgcacac 1440 tccctccgtc gcggtggcgc atcctacgcg tttaaatgtg gagctcccgt tgaactgatc 1500 agcctccaag gggactgg 1518 // ID DNA-2-9_NV repbase; DNA; NEM; 2210 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-2-9_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP211; KW NVREP285; DNA-2-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2210 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2210 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2210 RA Kapitonov V. and Jurka J.; RT "A family of DNA-2-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus. Its two halfs were CC reported originally as the unclassified NVREP285 and NVREP211 CC transposable elements [1,2]. XX SQ Sequence 2210 BP; 616 A; 477 C; 513 G; 602 T; 2 other; tgtgacgact cacgcgaaaa cgtaccttag agcttctcaa ttccgcgaat taacccgcga 60 aacgggcgcg agcgttccgc gaaacgggcg cgagcattcc gcgaaataag cgcgagcatt 120 ccgcgagata agcgcgagct ttccgcgaga taggcgcgag cgttccgcga gataggcgcg 180 agagttccgc gagtcaggcg cgagcttttg caaaacgggc gcgagccttt cgttgttgag 240 tcgcgagcac ataacgtaac aatcggcaaa agggctgaat cttgaatctt tcgatttcca 300 aagtcggtga aacgcgatag acatctactg wggtctatac cttagaaaaa gcctctctta 360 ggatagaagt aaacaagtaa gcaagtattt gagtttggtt tcgttgagat ctcgagtgct 420 agcaagggaa tcgaacggca aagtcgctac gatgctacat caagacaaca gcgctattac 480 caatcgcctc ttgagggata gcttgatatc gactccgaca gtttgacatc agtcggaaga 540 tgtttcgctc gaagccttgg ttggttcgct agaagccata tacttggtta agaaaacaac 600 gtttaaacat actatggttt aaatatatag aatcataaat aaaattttat taaatctagt 660 cgtagtaaag ttatttttct acatatacac tcgaacaacg atgcttctta aggtgcgttc 720 gtggagcaat gtagcgattg cgacaatctt ttttgtggta tctatttgat acgcgatttt 780 ttgagcgaag gtaaaccggc gtgatttatt cgccgccgac atataaacat atcgttgttc 840 ttcaacaaag acactcgaac aacgacgctt cttaatggtt tgcgttcggc tctatctaat 900 ggagcaatgt agcgattgcg tcaatcttta tttcaaaaga aagctcacat atcgggaatc 960 ttttttgggg ggtctgttta aaacgcgagt ttttgagcaa acgtaaaccg gcgtgattta 1020 gtcgccgccg acatgttaac atatcgttgt tttcaacaaa gacactcgaa caacgacgct 1080 tccttggttt gcgttcggct ctatctaatg gagcaatgta gcgattgcga caatctttat 1140 ttcaaaagaa agctcacata tcgggaatct tttttcgggg gtctgtttaa tacgcgagtt 1200 tttgagcgaa cgtaaaccgg cgtgatttak tcgccgccga cgcgacatgt taacatgtcg 1260 ttgttgttca acaaagacac tcgaacagcg acgcttcctt ggtttgcgtt cggctccatc 1320 taatggagca atgtagcaat tgcgacaatg tttattgcaa aagaaagctc acatatcggg 1380 gaatcttttt ttgggataat aatatataac aaagatctca tttggaatgg agatcttcgt 1440 gataggtgaa gctcgaaacc gatacgagtt ccgaaacgca tttcgccttt attacccaac 1500 acattacgaa ttcctacgtt acttacacca aattgttccg ccaaattaca acactacgta 1560 atgacatatt tcttttcgtt ttcagtagcg ctagaacgat cagtgatagt ttgatatcgg 1620 gcttcggtaa ccctttgttt aaaaaaagca gtcaccgaaa agactttcaa gagttcatgt 1680 caaaaactgt cgtccttatt ccccgaatac actacttatc tctagtaact tacacaaaat 1740 tgtccttaaa ttgccagact aactatttcg tatgtatttg cgattcgaga gagagtacga 1800 tctgtgaaag tttgtcaagg tgcttgggta ctcttctaaa aaagccgtaa cgacacaaat 1860 tctagacaaa atcgtcgctc cgtgctgggt aaaaaaaatc gtcctttcga aaaatcggag 1920 ttgactaagg atcaacttgc tggtcgctat tccgtgtcgt ttataagata cgacccgcga 1980 gttgtgttta gcaagtcgcg aggcttcccg ttgtcaaggc gcgagcgttc cgcgagaaag 2040 gcgcgagcgt tccgcgagat gggcgcgagc tttccgttat taaggcgcga gcattccgcg 2100 agaaaagcgc gagcattccg cgagaaggcc gcgagctttc cgcgaaacgg gcgcgagttt 2160 ggccaaactc gcggaaaacc ctaaggtacg ttttcgcgtg agtcgtcaca 2210 // ID DNA-9-29_NV repbase; DNA; NEM; 174 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-29_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP501; DNA-9-29_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-174 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-174 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-174 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-29_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 79-96% identical to the consensus. It was reported CC originally as the unclassified NVREP501 DNA transposon [1,2]. XX SQ Sequence 174 BP; 48 A; 45 C; 51 G; 30 T; 0 other; ctgcctcgta cccaggcgtc tcaagtcagt aaaaacaagt gaaaaatata ctagtgagcg 60 caatgagcca tgggaaggtt tagcgctggc gcaaaggacc aagggaaggt cgtctaccaa 120 gcacccctgc gcgcttagtc cggtcacgct agtaagcgcc tgggtacgag gcag 174 // ID DNA-9-9_NV repbase; DNA; NEM; 920 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-9_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-920 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-920 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-920 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 920 BP; 234 A; 202 C; 204 G; 280 T; 0 other; taccctggtt ccagagcctc gtgcgtctct ctatttagtg gccagcgagg ttgagacgag 60 gctctggcct ctcgaagcgc tatttcgact tctgctaggt tcagaatctg aacttggtcg 120 ctgattggcc aattgatgtg tggtcatgga aaccaagaaa ttctgacagt tttctattgt 180 attttcgctt caagttcaaa aggtcaaaac cggtttttaa ttcttattgt tcgcaataac 240 aaacatctaa acgaacgaag tagacgagcg atagattatt ttgatcgtaa ttttaatagt 300 gctttgcagt tcgaattagt tacaagattt accagtatta aaaatgtaaa gtttgttcaa 360 gaggagtctc tttacgagtt aatcaagcgg cgagatgtct tctctgtgct gccgaccggc 420 tacgggaaat cgctgatttt ccagcttatt cccggcgttt gctctcgcct caacgatatt 480 ggattcaact atcccaagca agcgattgta ctggttattt gcctcttgag ttctttgata 540 gactcgttcc gaggataact gcgagcttat ccgcgatttt ctcctccttg aagcgctttc 600 ccgagaaaat gttgtattcc ccacctccta tgggcatatt cttgtcacta actctacagt 660 aatgatccca tgggttttca gatgaatgtt gttgttttta aatcgggttt tcatgcgctt 720 ttcatactcg tgaattcgat tcccgagcga agagatgttt acatccaagg tagcaccacg 780 tgaaactgac acatgctaat cacaaaacgt taacatggaa gtgaggcaga agtcgaaata 840 gcgcttcgag aggccagagc ctcgtctcaa cctcgctggc cactaaatag agagacgctc 900 gaggctctgg aaccagggta 920 // ID RTE-4_NV repbase; DNA; NEM; 3965 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone RTE-4_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3965 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3965 RA Kapitonov V.V. and Jurka J.; RT "RTE-4_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 658-658 (2007). XX DR [2] (Consensus) XX SQ Sequence 3965 BP; 1054 A; 1021 C; 939 G; 951 T; 0 other; gggtgtatag ggtgactaat cctaacggcg ctggtcacct aaatccagta taactaccta 60 ctcgtggtgc acctgtttta gacaaaatgt tatacttggg accgagtaag ggacggtata 120 ttcccttctg ggtaggtgga gctcgttagc cttggttggc agtccaccta ggggaaggaa 180 aaccctgatt ccaaacctcc gctgccttgc ggctataccc gttctgggaa aggctaaggg 240 agcaaacccc tacagaaaac ccggagtgga gccccgttag gcagcctgtc tcctcagtcg 300 ctggcaactc ctgcagtcga cctggtacca aacgtattgg ctatgtcttt cctttggacc 360 ctatcagcaa gaccgagagg gggattctgg gagttgggca aaccagtctc tccatatttt 420 atgcccaggc tagcgcttgg agaaggtaac ttcagcatgt tgtaaagcat gaatcaaacc 480 ggggagtgtg cagttaccgg ttaaaagtta tggctaaatt ggcgtatggc cagacgcctg 540 gggccactct cgacagtggg aggggctgtt tagtcccatt ggatagctac cgcccgctta 600 aactgggcag cccccagtca ataaggtgct tcccgccaca gtctgcctgt tttgctgggg 660 tgagcagaac tgaagtctgg aaacagaccg acaagtggac tgcgactact tcacctaaga 720 agaaaggatc aaacacaaaa tggccagctc tcattattgg gagttggaat gtacgaacca 780 tgctgaccgg actgaccacg gacatacgta acatcaatgg ccttcgcaag accgccataa 840 tcaaccaaga acttgacaga ttgaatgtcg atattgcagc gctacaggaa acccgccttg 900 ctggttctgg aagcctgaaa gagagacatt acaccttctt ctggcacggc aaaaacgaga 960 acgagcccag ggagcatgga gttggttttg ctataagaaa caatcttctt cagttaatag 1020 agcctggtcc acccatatct gagcgcctca tgctcatgaa actcaaaact gatgatggca 1080 ccaccaacct gctcgctgtc tacgccccga ctctgacttc ctcctcggac gctaaagatg 1140 cattctacag tgagctcgat gtaattatca aacacttacc taagaacgaa gctctgttcc 1200 tcctcggtga ttttaacgca agagtaggaa acgatcagga gtcctggcca atctgcctcg 1260 gtcactttgg cgttgataga tgcaatgaaa acgggcaacg cctgttggaa ctttgttctc 1320 tccaccatct ttgcatcaca aataccttct ttaatgtaaa gctacgacac aggctgtcat 1380 ggatgcaccc tagatctaaa cactggcatc agctggacct aattatcact agacggagtc 1440 aactaaataa cgttcgtatt acaagatctt accatagtgc tgactgtgac accgaccatg 1500 ctctagtttg ctctaagatc cagtcacgcc ctaaaaaact gcaccgtgct cgtaatgctg 1560 caaaagctcg tatcaatgcg gctgccacta caatcccaca gaaggttctt accttccaag 1620 aactccttga atccaagtta gagaactatc aagagcttag gactgaagac cactggagac 1680 atgtcaagga tgtgacctat gaggcagcga tgcttgcctt cggtaaatcg gaccgcagga 1740 gcgaggattg gttcggcgcc aatatagcac acttgcaacc cctgatcgaa gcgaagcgac 1800 ttgccttaca gaacttcaag cttaatccaa cctcacaatc tctcgaagct ctacgtgaag 1860 ctagaaggca tgcaaaagaa gagtgtaaaa aatgcgccaa caattactgg tcgaatcttt 1920 gtgctaggat tcagtctgct gctgacactg gcaacgtcaa gggcatgttt gatggtataa 1980 agagggcaat tggaccaaca caaataaagc ttgctccgtt aaagtcgtca tctggagaga 2040 tcatcacgga aaagtccaaa ttgttggagt gctgggtcga acactacagc gatctctacg 2100 gcactgcaag tttcatttct ccctctgcaa tcaaccatat tgaaagactt ccaactctgt 2160 ccgagctgga tgcaatgccc accaaagtcg aactccgtga agccatcaaa gtaatatctt 2220 ctggcaaggc ccctgggcaa gatggcatcc cagcagagat cttcaaatgt ggcggagaca 2280 agctcctcga ttctctcttc aaactccttt gcaagtgctg ggagctggga tccgtccctc 2340 aggatttcag agattgctcc attaccaacc tctacaagaa caagggggac agaagtgatc 2400 ggaataacta ccgcggcatc tcacttttgt gtattgctgg taagctattc gctcgagtgg 2460 ctttgaaccg tttgcagaaa cttgctgaaa gggtgtaccc tgaatcgcaa tgtggcttcc 2520 gctcgaatcg ctcaacagtt gacatgatat tctccctgag gcagcttcag gaaaaatgcc 2580 gcgaacagca aagacccctc tttgtcgcct ttatcgatct aaccaaggct tttgactcag 2640 tcagcagaga cggtctgttt cacatcctac ctttagtcgg ctgtcctccg aagctcctta 2700 actttataaa gtcattccac gatgggaccc gtggcactgt taagtgtgag agcaactcgt 2760 ccgaggcatt cgacataaac atcggcgtta aacaaggatg tgtattggca ccaaccctct 2820 tcaacatctt cttctccgtc cttctgagac atgcatttgg ctctgctgat gaaggcatcc 2880 ttctacgtac tcgctcagac gggaaactat tcaatccagc gagactacgt gctaagacca 2940 aagtccgcaa gtgcacgata cgcgatcttc tcttcgctga cgatgctgct ttggttgcac 3000 acagtgagag tgagctacag tcccttttgg accgtttctc gaacgcttgt gcggacttca 3060 gtcttgcaat cagccttaag aagacgaaag tgatgcacct aggctctgaa attgcgccta 3120 cttttaccat caacgacttc accctagatg ttgttcctca gtttacctac cttggctcca 3180 ccacctccgc caacggatgc ctcgatgtcg aactcggcaa aagaatcggt aaagcagtga 3240 caacaatgac aaagctttcc tctcgagtgt gggagaacaa gaaacttacc atctcgacga 3300 agatcaccgt atatcgcgcc tgcattttga gtactctcct atacggaagc gaatcttgga 3360 ccacctacgc gcggcaggag aagcgattaa ataccttcca tatgcgatgt cttcgccgca 3420 tcctcggtat ccattggtcg gataaagtta cgaataacga ggtcctcgaa agatcaggtt 3480 taccgacgct ttttacccta cttcgtcaac gcaggttgag gtggctaggc cacgtttgtc 3540 gaatggaaaa tggccgtatt cccaaagatc ttctttacgg cgaacttgca cacggatcaa 3600 gacctgtagg acgcccgaag ctccgcttca aggactcatg caagcgtgat atgctcgcaa 3660 tcggcctcga cgtggacaac tgggagaagc ttgccgagga tcgcagcaga tggaggtctg 3720 aatgtgctgc cgcactcaac tcaggggagt tagagctgaa aagagaggcc gaagagagaa 3780 ggcagaggag aaaggcatcc gaaattcgaa ctggatcaaa cccatctccg acgtctgtcc 3840 tcgtttgtcg ttcatgtggt cgcacatgtg cttcgcgcat tgggcttttt agtcatggaa 3900 agaaatgcca acgttcatcg cgctgatgtc atggacactg actgtccgaa gactgcctac 3960 tacta 3965 // ID Gypsy-25-I_NV repbase; DNA; NEM; 4944 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-25_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25-I_NV; KW Gypsy-25-LTR_NV; Gypsy-25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4944 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4944 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-25_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 481-481 (2007). XX DR [2] (Consensus) XX SQ Sequence 4944 BP; 1469 A; 1290 C; 1169 G; 1016 T; 0 other; tggtggcagc cctgaggacc cgctaaaaat cagtttttag cagcctaata tccaagtgaa 60 caagtcagcg ttttatctgg gacattccgt tggacaaacc gaagaaaaac agggaaaaaa 120 ctgtgggaga cacgatccgt tcgacactct gcacaaaaac ttaacctcag cgagtatagt 180 tcaagtcaag ggacaacata ccgccgactt caattcaccg agctggaaag aaacacaaga 240 accacagaca gctaccacac actgggaagt acaatctacg tcgacttaac agctgagttg 300 atttattcaa agagtatttt ctgtaaataa gcttacaaag acaagcttac cgttgtcaga 360 aataaactac gacaagccgg cagattcatc atcaattcca actctgggag gactttcatc 420 tcaagcgggt atttataacg actccggacg tgtacagact ttaactagag tagtgttagg 480 gcagtttaaa gtaagcataa cgtggttttc ttgccgttcc aaaggggact cggcaggctt 540 attcagtttg agagttttca ttcacgaaaa caaaacgtgc catcgacgtt ttgaccgcgc 600 gcggcctggg accgtaacac aggtataccg cgcacgctat aattttctag tacgatcttt 660 ttcgcgattt cgcgacgttt tttcgcgcat attttttcag atatttttta agcgttattt 720 acttcttaaa attatcactc tgtctttgtt attgtgcgaa tttatttaca gtaatggcta 780 catatcagat cccagcccca cccccaatgt cgttacaggg agacgtagtg gagaactggc 840 gggacttcga atcctcatgg gactattata ccattgctac cgatctaagg tcgaaattga 900 catcccctcc aggcaaggaa atagtagccg caacactttg cacggtaatg ggccctgaaa 960 gcaagaagat aatgaactca ttacccaccc tgaccaacgc cgacaggaaa gacccgaaga 1020 ggattataga agagcttaga aaatactttg taccccaacg caacgtgctg tatgaacggt 1080 ttgttttcaa ctctgcaaca cagaagccct ccgagtccgt cgacgaatat gtcgtccgcc 1140 tgcgtcatct agccaactct tgtgagttcg gtgacttgaa ggactctctc atccgagatc 1200 ggatagtcat aggtactacc gatgagagtg gacgtgaacg ccttttaagg gaacggccgg 1260 tgccaagcct agataaggtg gtggaaagcc ttcgagctgc cgagatctca agaactcacc 1320 gacaagtgat aagcgggaaa ccatactcga gccaggcaga aaccattcac catacagata 1380 agaggcagcc gaacagaaga aacaaccaaa gaaagggccg gggtaacaac ggtaacaacg 1440 gtggacaaca aaaaacaaac gggaacaaaa gaaggcaaac ccaagaccgt agaccaccaa 1500 ccccgggaag ccataactcc tccacctcct gtcactggtg tggaaaaaag gcagaccatg 1560 tcaagaaaga ttgtcctgct aaggatgcaa agtgccgtaa ctgcggcaaa acaggccact 1620 acgccgtagt ctgtcggtca aacaaacaag tgcatgaagt aaatagagaa gaggaaggaa 1680 gctaccagga agattactat ttagacgact gctacttcat gggcgaagtg agcaccacca 1740 acgatgaatt ctggtcagcg gaagtgctca taaaccacaa cccctgtacc ttgaaacttg 1800 atagtgggtc aaaggtgaca gtggttggcg acaaggcacc gtggttggaa aaccggcgac 1860 tggacaaggc gacaagcatg ttcagaggac ccggtggagt gaacttgtcc cacttgataa 1920 aaggacagat aacagacgcc ttatttgcag tcggagggag gacacaccgc gaaaatgttt 1980 acgtcatgaa gaaccaatct aagaatctac tttccaagtc agcaatccag gcactccagc 2040 tgttaatacc gtcagcagca gtgcacaatg tggagaccgc ccctaatttc aaggcagaat 2100 tccccgagtt attcaaaggg ctgggcctca tgaaggataa gtacaagata cctctgaaac 2160 cggacgcagt atcagtttgt ctatacacac cccgacgtgt accgcaccca cttctcccta 2220 aggtcaaaga gaagctactg gccatggttc gtcagaaggt aatctcacca gtaagtgagc 2280 ccacagactg gtgctcaggc atggtgatcg ctcccaagcg caatggtgat gtaaggatct 2340 gcgttgacct gacaccgctg aacaaggcag taaaacgaga gatccaccct atggcaagtg 2400 tcgacgagaa cttggcaaag cttaaggaca gcaaagtctt caccaagcta gacgccaact 2460 ctggattttg gcaaataccc ctcgacgagg agtctcggtt gctcaccacc tttgtcacac 2520 catttggcag gtactgcttc aaccgcctcc catttggaat cagctcagcc cctgagatat 2580 ttcagcgtac catgtctcga atcctagagg gcctcgatgg cacagtttgt cacatggatg 2640 acatcctcat acatgggccg acacaggagc ttcacgacag ccgtgtccga aaagtgttac 2700 agcggctcaa ggacgctgga gtcacattga acgagaaatg tgagttctct aaacagcgca 2760 tgaagtttct cgggcatgta atctcggagg atggggtaga agcagacccg gagaaaacca 2820 aagcaatcca agattttccc cgacctacca ctgtgacaga gctccagcgt ttcaatggta 2880 tggtcaacca gctggccaaa tttatacccg acctagcaac catcaatgag cccctacgcc 2940 agctacttaa gaaagagcag cagtggcttt gggatcagcc tcaggaaagg gcctttcagg 3000 cgatcaagac gaaactgacc tctacagatg tgctggcaca ctacgatcca aacaaacgaa 3060 gcatcgtcgc tgccgatgca tgccaggacg ggcttggagc agtcttactg caaagcgaca 3120 gcagcggtaa ccggcgccca attgccttcg cttcacgctc tctaaacgac acggagaagc 3180 gatacgcagt catcgagaag gaggcgctgg ccgccacgtg ggcatgtgaa aagttctcag 3240 actacatcct tgggacacca ttcaccctag aaacggacca ccgcccactg gtaccccttc 3300 tctcaagcac agacctctcc aagctgcccc cgagggtttt gaggtttcgc ctccgaatgg 3360 ccaggtattc accagaggtc acttacgtgc aaggagtgca ccaaaacaca gcggacgccc 3420 tgtctcgtgc acccacaagc agtcccactc cccaggactt aaaacaaatc gaggaattag 3480 aagaacacag cgaatcagtc ctagagtccc tacctgcaac ggaacggcgc ctcaaagaca 3540 tccaggaagc ccaggactgc gacgccatat gcaagcaggt gaagacctac tgcttagagg 3600 gatggcctcc cattatgcca tccctaccac tcctaaagcc atactgggag aagaagcaac 3660 acttgacggt caaccgagga atcctgatgt atgatcacag gctagttatc ccctcaagca 3720 tgcaactaga gatgctggag accattcatg aaggccatct tggcattacc aagtgccaag 3780 ggcgcgcgag ctcctcggtg tggtggccgc tcataaccaa gcagatagaa gcaatggtca 3840 acagatgcca aacttgcgcc aaacttagac cagagcgaag agaacccctt atggcgctgt 3900 ctttcccaaa cctaccatgg agccgggtcg gtacagacct ctttgaacta gaacagaccg 3960 actaccttat cgttgtcgac tacgcaagcc gatggtttga aatccgaaag ctaggatcaa 4020 ctacctcagc tgcagtcacg cgccacatgt gcgagatctt tgctctgcac ggaataccgg 4080 acacagtcgt ctcggataac ggaccccagt atgttagcca ggaatttacc aactttgcca 4140 aggacatggg gttcacccac atcacctcct ctccacacta cccacaagca aatggtgagg 4200 tcgagagagc ggttcagacc gccaagaaca tcctgcgaaa gaacacaaac ccacaccttg 4260 gtctcctagc ataccgttct gcccccctgg caaacggcct aacccctagt gagattctga 4320 tggggcggaa actgcgtaac aagttgccat cggtccccga gaacctaaaa ccccgaaaga 4380 tcgaccaaga acagctgctt aagagagaac aagaatatcg agagcgctac tccagtaact 4440 acaactctcg ccacagagct gtggaactcc caacactcca ccaaggggac aaggtgttca 4500 taagggacca gcaaaggtac ggagagatag agaagaaact tgcaagcccg agatcctacc 4560 aactggtaac agaaaatggc tcagagatca gaaggaacag aagagcgtta gtccatgaac 4620 cagtggcgac atctggagag tccagctccc taccgagccc ttccaaccga ccaccagtac 4680 gcgaaggagg agaaggatcg ccaggacctg ctgcgtctcc ctcccctagc ccatctaagg 4740 cagtagttag aaggtcgggc agacttttaa agcccactaa taatccagac atgatttatt 4800 attagttgga cgttcacaag tgtcactgaa cacctgatta tgatgattat ttagtgtgga 4860 tgcaaattag catttagacc gttccaattc aagtttgtta gttataagtt tatggacatg 4920 atcttgtgta aactgaaagg ggga 4944 // ID Gypsy-18-I_NV repbase; DNA; NEM; 4027 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-18_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18-I_NV; KW Gypsy-18-LTR_NV; Gypsy-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4027 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4027 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-18_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 465-465 (2007). XX DR [2] (Consensus) XX SQ Sequence 4027 BP; 1243 A; 701 C; 1088 G; 995 T; 0 other; ttggcgacga gcgattcggg atcatggccc agcagatggc acagggcgtc cctgtcccaa 60 cttatacagg agttggtgac atcgagagct atatggagcg attggaatgt tattgcgatt 120 tgatgaagac tccagaggaa agcaaggttg cgcttctcct ttgcggatta actgcggggc 180 agtatgaaac actgagggat ctagtgtcgc ccgaagtacc taaaacggtg gaattcaaag 240 tcctcaagga aaagttagtg gagcattatg gttccgtgcg gaatacgcga tttgagagga 300 cgaaattccg tgcagtaaag agggaagaaa acgaaagtgt ggcggctttc gaggtaagat 360 tgcggaatgc aatccgacat tgcgggttta ccggcgagac tttaaacgag aacctcgttg 420 aacagtttat atctggtata aaccacagtg gcatagagcg aaaacttttg cagaagggga 480 acgacctaac tttggcccag gcgattcagt tggcaaacac gtttttgctg tttgaagatt 540 cagcacgtgg aggaaaagtc gacacacccc caatcgaaca gcaaagtgga atttccaacg 600 taaagtccga agtagagtgc tatcgctgcg gaagaaaagg gcaccggtcc agcgacaagg 660 tctgtaaagc attgggaaag aaatgcaaca actgtggagt cgtaggacat tttgcaaagt 720 cgaaattttg caaaggagga gagttgaaat ctcatgctgt gcgtggacga ggacgtggcc 780 gtgcgcgacg aagcggtgga attcaacacc agataacgga agagtcagca gataaggaca 840 gtggggtgac ccatttattt tctgtagatg aggagattag gcaactcagg gagactccta 900 tgtgtcaggc gatagtcggg ggaaagagtt ttccgtttat tattgattcc ggggcagcgg 960 cgaatattgt ttcaagtaag ctttacgagg aaattaagag taatgtttcg cttaggaaaa 1020 ccagcaagaa attgtatgct tttggtcaag aggacgcgct taagctgaaa ggcgaatttg 1080 aaacggaagt tagtatctgt agccggaaat gtgttgcaac attttatgtt tttgatggca 1140 atgcatcagt tagcaatttg attagtcata atactgctaa gaagctacaa ttattacatg 1200 taaattcagt ttcagaacaa gaacagcaat gtaacactag cctaggttcg gaaatgaagt 1260 ctaaatttcc agagtgcttt tcaggggtgg gcaaactaaa gggaaataag gttaagttac 1320 acattgacga taaggtggaa ccggttgctc agccagtaag acgattgcca ttcggttatc 1380 gagacaaggt ggcggatctt ctgaaaagac tacaagagga agacataatc gaaccagtgg 1440 aaggtgtagc atcgagatgg gtaagcccta ttgtggtaat tcctaaggca aatgaggaaa 1500 ttaggatgtg cattgatttg aggaaggtta accaggcagt tttgcgcgaa aggtatccga 1560 ttccgactat gcaggaaatg ctagttgagc ttaatggtgc tacagttttc tcaaagttag 1620 accttaagca aggatttttt cagttagaat tagaggagga atcgcgagac gtaaccactt 1680 tcataaccca tgtaggatta tttcgcatga agaggttagg tatgggaatt tgcagtgcac 1740 cagaggtatt tcagtataca gtgcagaagg tgttagttgg attgccagga gtgttaaact 1800 tggcagatga cataatggta tttggtaaag atcaggctga acacaagaaa agactaacta 1860 gtgttatgaa aagattatca gagagcgggt taacccttaa tccggagaag tgtcggtttg 1920 gtttatcttc ggttacgttt ttaggacacg taatttcaga caaagggata gctgcagacc 1980 caggcaaagt ggagtccata gtcaatgcta gagcgccagt taatgtaaca gagctacgtg 2040 gattcttagg cttagttcag tatgtaggca ggtatatccc agatttagca acactttcct 2100 cacctttaag ggaacttact aggaagtcag tgacctttga gtggaccccc agacaagaag 2160 atagttttca ggctatcaag cgtgtaatga gtgccagcga gaccttagct tattttgata 2220 ggcaggcaga aactctcgta gtggcggatg ctagtcctgt agggcttggg gcagttttga 2280 tacagaagca gggaggaact gaaaaggtag ttgcttatgg acaccgtagt ttgtcagatg 2340 tggagagtag atattcacag acggagagag aagctttggc tttagtgtgg gcgtgtgagc 2400 atttcagatt gtatctgtta ggtatacagt tcacgttagt cacggatcac aagccactta 2460 cacacatctt taacaatgct aattctaagt cgacacctag attagaaagg tggagtttac 2520 gattagcacc ttataagttt aggatagttt ataggccagg cgagtctaat attgccgacc 2580 cgatgtctag gttgagctgc agaggcaatg tagagtttcc tgtaggagat gatactaggg 2640 agtatatttc tatgattgtt caggaggcag tgccggaagc tatgtcatgg caggaaatca 2700 aggccagttc agatgaatgt gaggttgtac aagtagtcaa ggaagcaatt aggacaggaa 2760 gatgggagaa atgttcaaca agcatcaaag cagtcagatc agaactcagt gagagtgacg 2820 gtgtaatctt gagaggaaaa aggatattca ttccacctag tttacaagat agagttttaa 2880 ggctagctca tgagggacac cagggtattg tcaagtgtaa acaacgtcta agaagcacag 2940 tgtggtgggt aggcattgat aaggacatag agaaactgtg taaatcatgt cagtcatgcc 3000 agctagtgtc tagttatgac agaccagttc ccatagcaac aacagagatg ccaacatcac 3060 cctggaagtt ttgtagtaca gacttgctag gcccacttcc agatggtcgt tacgttatag 3120 tgataattga ttacttcagt aggtactttg aggcagcatt gctcagatct actaagacag 3180 gggcagttat agattttctg gatgccattt ttacgagatt tggttaccca gaagccctca 3240 ggtcagacaa cgggccacag ttcacttcgg tagagtttga ggcatacctt aaaagcaatg 3300 gcatcaagtg ggtgtcaact actccgttgt ggccacaggc aaatggtctc gtagagagga 3360 ctaacagaac catagagaag atacttaaaa tagccacagt agagaaaaag gatcttcaga 3420 aagagtttag gaagttccta gtagcataca ggtcaactcc gcatacaagt actgggtgta 3480 ctcccttttc tctgatgttc ggaagagaaa tgaggaataa gctaccacag ttagattatt 3540 cagctgctgc cattccagaa gtggcaagag aaagagatat ggagtataag ctaaagatga 3600 aagactatgc agacaagaag gcggcggata gcaacattca ggaaggagat atagtagtaa 3660 tgcggaatga gacaaaaggt aaattacaac cgaatttccg accagaaaag tacaaggtaa 3720 tcaaccttaa tggtccagac atgatagtgc aatcaaagga gaatggaagt acagttaggc 3780 ggaatgttca gttcgcgaag aaagtacaag tagcagaacc cgatactgaa gtagaagttt 3840 cagagcctga accggaaaca gagcatacag ggccagatgc ggttactatg gcgaccgaaa 3900 cttcagcacc tgaagtcaga cggagcgtac gagtgcggaa gccaccagcc aagtttgctg 3960 actaccttgt caaccactag gggtcgttct tgcggtttgt ttaggttttt atctaaaagg 4020 ggaggga 4027 // ID DNA-9-23_NV repbase; DNA; NEM; 244 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-23_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP164; DNA-9-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-244 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-244 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-244 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-23_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-FEB-2011). XX DR [3] (Consensus) XX CC Copies are from 84% to 94% identical to the consensus sequence. CC Originally, this family was reported as the NVREP164 unclassified CC DNA transposon [1,2]. XX SQ Sequence 244 BP; 54 A; 65 C; 70 G; 55 T; 0 other; tagcctacct gtaggctttg atagtttttc cggcacgaaa accccgaaaa cacggagttc 60 gcataccacg gccgccatct tggataatgc gctccgcagg gggaggggga ggaaaaatgc 120 gcggggattt tttctccccc tccccctgcg gagcgcatta tccaagatgg cggccgtggt 180 atgcgaactc cgtgttttcg gggttttcgt gccggaaaaa ctatcaaagc ctacaggtag 240 gcta 244 // ID Academ-1_NV repbase; DNA; NEM; 6237 BP. XX AC . XX DT 30-APR-2010 (Rel. 15.04, Created) DT 30-APR-2010 (Rel. 15.04, Last updated, Version 1) XX DE This family belongs to the Academ superfamily of DNA transposons. XX KW Academ; DNA transposon; Transposable Element; Academ-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6237 RA Kapitonov V.V. and Jurka J.; RT "Academ - a novel superfamily of eukaryotic DNA transposons."; RL Repbase Reports 10(4), 646-646 (2010). XX DR [1] (Consensus) XX CC Academ is a novel superfamily of DNA transposons that populate CC genomes of metazoans, including cnidarians, insects, sea urchins, CC lancelet, and fish. The autonomous Academ transposons encode a CC ~1500-aa protein composed of a novel Academ transposase domain, CC which is not similar to transposases encoded by any other CC transposable elements reported previously, the XPG domain, and CC the putative Cys8 zinc finger. The XPG domain is structurally and CC functionally related to FEN-1; divalent metal ion-dependent exo- CC and endonuclease, and bacterial and bacteriophage 5'-3' CC exonucleases. The Cys8 zinc finger is a conserved set of eight CC cysteines: CC Cys-X-Cys-X3,4-Cys-X3,10-Cys-X-Cys-X6-Cys-X3-Cys-X1,2-Cys. CC Academ transposons generate 3-bp target site duplications and CC contain terminal inverted repeats whose length varies from 6 to CC 530 bp. Usually, Academ transposons have the 5'-TAG and CTA-3' CC termini. CC Academ-1_NV is a very young family. The consensus was derived CC from multiple alignment of 5 copies; it can be a good CC approximation of an active autonomous transposon. Non-autonomous CC derivatives of Academ-1_NV are DNA3-6_NV and other DNA3-N_NV CC families. TIRs are ~530 bp long. XX FH Key Location/Qualifiers FT CDS 899..5353 FT /product="Academ-1_NVp" FT /note="Contains the Avadem TPase, XPG nuclease, and FT Cys8 zinc finger." FT /translation="MAKELEKFDIPLNRRKRASIFSKCIICQVDRRDEKLR FT NVKKASVETFKNAVRIRRDEVYERLSKDLEEISEREIQWHSTCYSSYTSEH FT NLRHCHAKFEAQARDVENQISSEPTISTRSSTPPIDLSKCFICGNRSYKKD FT KRLLNIATNEASLSLRQAATSKGDEKMLRLLDSVRDDLCAADGRYHKNCHA FT SYVSKSNLKHKGFVEEKGESLYDEAFKTLAAEIREGIEEGKAYDMVTLLSK FT YCGLLEERGVDGSSYSKQRLKLCLKHHFEDRITFHQQPSKNKPEIIFSSQI FT SLIDALNAAAQSKSDSRTYLIDVARYLRSEIKKCDGISFKPLNVNDVSLDS FT ARRIIPDSLYWVIRLLLTADEFEFKRMSPSPCKKKEDERRILSIAQDIIHC FT ASNACTKLPKHISLAMTVHHLTGSKQLVSLLNRMGHSSSYDDLKAVDTSLA FT MEVMARAEQHGTVVPSVISPGAFVQLAADNNDLNEETLDGKNTTHATTMVV FT YQRKVFGPDPPPIILADHSSRRRSLPESTNLYELLECPCYGRRPALNEHIR FT KVKNEWFSSELDVLVRALREDEIWLLLRMDLTGRTPAAVMKQTVPGWSGFN FT TILYPDLPLSSKIGYCPMIDGASTEFSTVYTVLKHAQKVSAVAGQEDTVIT FT FDLAIYIKAKQIQLRYPEEFANTVIRLGGFHIALNFLSLLGKKFASSGLDD FT LLIESGVYAAGTTSALLKGKSYNRGIRAHKLSMEALHRMMWSAYAQWCKDC FT EDSGLDETMISRIEESREAILSRDNTSQNLEVLECDIEKLAASLGKFKEEA FT SLQSKTFDFWMRYMSMVKLLLQFIKAERTGNWELHLASTAAMIPHFFSMDR FT PNYSRWLPVYISDMRQLEVKHPRVFEEFMAGNHAVSRSGQPFSQVWTDMAL FT EQSVNADSKSKGGIVGISQNPAALQRWFLTSHERASVTTALKDAYSAQSDH FT THSHKELSSKRIARDEADVNKLVNCFASGLMNNPFEHESDALVNFATGVVL FT PTEVAKHLMESERNGQEQMAVFVKERINSSEVSFWDPIPKLKVKTFDTVTK FT RVQVKATNEKLVTVGSDRDLFGRLLIAANARQVDLKGVLAHELSSVPYALA FT HQDGSLRKTNKSALAGIIEANVDVPSMLPPTTKDTVHLIDAMALVQAVKSG FT GSNTFGELAVKYFSVITGPMNAACCNEVHLVFDQYWEMSIKAGERSKRAAT FT STSLEVQISGPATPIPKQWGKFITSSKNKVNLCEFLTKSLTELGMEQLESD FT QRLVLGGGERDGFRALEVTFGHSEEVEALRSDQEEADTRLFLHAKHASINH FT PRCRIVVHSPDTDVLVLGVCHYTRIGCDELWLKTGIKDRLRFIPLHAMAQH FT LGERMCDALPGFHAISGCDSTSSLSGIGKKKAWDILQSNKDHQDSLSLLGA FT AENVGAATRSKCEXYVCXLYHKRKSTSADELRYFLFCQKKQKSERLPPTSN FT SLQHHLERANYQALVWRRSL" XX SQ Sequence 6237 BP; 1844 A; 1379 C; 1475 G; 1535 T; 4 other; tagtcaggga gcagataccg gaaaaattag gtctcgctca accctcacca cagaaaaggt 60 ttgacagtgg aatcttatag aacaagaccc cctgaacaac gctagctagt tcgtaaagcc 120 gatttgtggt gtcaatcaaa agatatggac gtgttttatt acgtcactcg tagtcctgca 180 tggaaacgag gctcatttta aaagggcgcg tttattctat ttttccgtgc ctagaaacgc 240 tataacttca cagttttttc acatatcaac cttctaagca aatggctaaa gtatgcccca 300 gataaagaaa agtcacgtga tctgtcacgt gtcaaaatgt aataatgatg aaaaatgttg 360 tctttcctat cgaaaattcc gccgtagccg gtaaaacgga atcattcaac tcaaggcgac 420 tgttgtccac tcatctaatg gctgctttga gctctgagct gatatccgtg tcgctagaga 480 tacatgtgta gttattccta cctcaccaca ggaagcccgc tcctattaat atgtaggtaa 540 aacatattgc tggaaaaatg gccaggtcat gaataaaaca agtaggtagt actacagtat 600 tcaaaaacac gactataaaa aagccgcagc atttacaatc aaagttaaag atgatttata 660 aaggtatata tttaaatatg tctcatcatg atgtcgaggc tagctcaatc caagatggcg 720 gcgcccatgg cagagtcttt acattgtctg taagtacaac gactttttga tatttaaaat 780 agattttagt tgatataaat ggaaatttta ctctcttaag acttgtacgt tgtaagttga 840 gtatatttgt tttattaaaa atgctattaa attgacaaga atcgtatctt ttttagtaat 900 ggctaaagaa ctcgagaaat ttgacatccc gctgaatagg aggaaaagag ctagtatttt 960 ttcgaaatgc atcatctgcc aagtcgatcg tagagatgag aagctaagaa acgtaaagaa 1020 ggcatccgtt gaaacattta aaaatgctgt aagaataagg agagacgagg tttacgagcg 1080 acttagcaaa gatttggagg agatatcaga gcgggagata cagtggcact cgacgtgcta 1140 ctcatcgtac accagcgagc ataatctacg gcattgtcat gcgaagtttg aggcccaagc 1200 ccgagatgtg gaaaaccaaa taagcagcga accaaccatc tctacgcgat cttctacccc 1260 gcccatcgac ttgtcaaaat gctttatatg tggcaacaga agctacaaga aagataagag 1320 gttgctaaac atagctacga atgaggcaag cctatccctt agacaagctg cgacaagcaa 1380 aggcgatgag aagatgctac gactccttga cagtgtaaga gatgatctgt gtgcagcaga 1440 tgggaggtac cacaagaatt gccatgcctc ctatgttagc aaatccaacc ttaagcataa 1500 agggtttgta gaagaaaagg gggaatcact gtatgatgag gcattcaaga cgcttgcagc 1560 tgaaatcaga gaaggaatcg aagaaggaaa ggcttatgac atggtaacac ttctaagcaa 1620 gtactgtggt ctacttgaag aaagaggcgt agatgggagc tcttactcta agcaacgtct 1680 gaagctttgt cttaagcacc acttcgaaga ccgtattaca ttccatcagc agcccagcaa 1740 gaataaaccg gaaattatat tctccagtca aatttccctc atagacgccc taaatgctgc 1800 cgcacaatcc aagagtgata gtagaactta tctcatcgat gtggcacgat acttaagaag 1860 tgagatcaag aaatgtgatg gaatatcatt caaaccactc aatgtcaatg acgtctcact 1920 tgactctgct agaagaatta tcccagatag tctttattgg gtgatccgcc ttctactgac 1980 cgcagacgaa ttcgagttca aacgcatgag tccaagtcct tgtaagaaga aggaagacga 2040 gagaagaatt ttaagcatcg ctcaagacat cattcactgt gcgtctaacg cttgtacaaa 2100 gctgccaaag catatcagtc ttgccatgac tgtccatcat cttacagggt caaagcagct 2160 agtatcacta ctcaatcgca tgggccatag ctcgtcgtac gatgacctga aagcagttga 2220 tacaagcctt gcaatggagg tgatggcaag agcggagcag cacggaactg ttgtaccatc 2280 agtcatttcg ccaggagcat tcgttcagct tgctgcagac aacaatgact tgaatgagga 2340 gaccctagat ggaaagaata ccacacacgc cacgacaatg gtcgtttacc aacggaaggt 2400 ttttggtcca gatccgccac caatcatctt ggctgaccat agcagtagga gacgatcctt 2460 gccagaatcc acaaatcttt acgaactgct ggagtgcccc tgttatggaa gacgacctgc 2520 actcaatgaa cacatcagga aggtgaagaa cgagtggttt agtagcgagc ttgatgtttt 2580 agttcgtgcg ttgcgagagg acgagatctg gcttctactc cgcatggatc tcacagggcg 2640 cactcctgca gcggtcatga aacaaactgt gcccggatgg agtgggttta acacgatact 2700 ttacccagat ctacctctgt caagcaagat aggctactgc ccaatgatag atggcgcctc 2760 tactgaattc agtaccgtct acaccgtcct aaaacacgca caaaaggtca gtgctgttgc 2820 tggtcaagaa gatactgtaa taacatttga ccttgctatc tatatcaaag caaagcaaat 2880 ccagttgcgc tacccagagg agtttgccaa cactgtcatc agacttgggg gcttccatat 2940 cgccctcaac tttttgtcgt tgcttggcaa gaagtttgcg agttctggtc tagacgacct 3000 tctcatagag tcaggcgttt atgctgccgg tacaacctct gccctgttaa agggtaagtc 3060 gtacaacaga ggaataagag cgcacaagct atcgatggag gccttacatc gcatgatgtg 3120 gagtgcttat gcacagtggt gcaaagattg cgaggacagc ggtctggacg agacgatgat 3180 cagtaggatt gaggaatccc gggaggccat cctatcaaga gacaacacct ctcagaacct 3240 agaggtgctt gagtgtgaca tagagaagct agcagccagt ctgggaaagt tcaaggaaga 3300 ggcctcacta cagtccaaga cctttgactt ctggatgaga tacatgtcta tggtcaagct 3360 gttactccag tttatcaaag ctgagcgaac gggcaactgg gaattacatc ttgcttcaac 3420 agcggcgatg attcctcact tcttctcaat ggatagacct aactattcca ggtggcttcc 3480 agtttacata tcggatatga ggcagctgga agtcaaacac ccgcgcgtct ttgaagagtt 3540 tatggctgga aaccatgcag ttagccgctc tggtcaaccc ttctctcaag tgtggacaga 3600 catggctctg gaacagtctg taaatgcgga ctcaaagtca aaaggtggaa tcgttggaat 3660 ctcccaaaac ccagcagctt tgcagaggtg gtttctcaca agtcacgagc gagcctctgt 3720 taccacggca ctgaaggatg catactctgc acaaagtgat cacacccata gccacaagga 3780 gttgtcatca aagaggattg caagagacga agctgatgtc aacaagcttg ttaactgttt 3840 cgcatctgga ttaatgaaca atcctttcga gcatgagtct gacgccctcg ttaacttcgc 3900 aacaggggtt gttttgccga ccgaagttgc caagcatctg atggagagcg agcggaacgg 3960 ccaagagcaa atggcggtat tcgtaaagga gaggatcaac tccagtgagg tcagtttctg 4020 ggatccgatt ccgaaactca aggtcaagac ctttgacacc gtgactaaga gggtacaagt 4080 aaaagcaacg aatgagaagc tggtaacagt tgggtccgac agggatttat ttggcaggct 4140 gttaatcgcc gcgaatgccc ggcaagtaga cctgaagggc gtccttgcac atgaactttc 4200 ttcagttcca tatgccctcg ctcatcaaga tggaagcctg aggaagacca acaagagcgc 4260 tctggcggga ataattgaag ccaatgttga cgtccccagt atgctaccac ctactactaa 4320 ggatactgtt catctgatcg atgcaatggc tctggtgcaa gctgtaaagt ctggtgggag 4380 caacacattc ggagagttag cggtgaaata cttctccgtc attacaggcc cgatgaatgc 4440 tgcgtgctgt aatgaagttc acctagtgtt tgatcaatac tgggagatgt caatcaaagc 4500 gggagaacga tcaaaaagag ctgcaacttc aacttcacta gaggtccaga tcagtggacc 4560 tgctacccct attccaaaac aatggggcaa gttcatcaca agcagcaaga acaaagtcaa 4620 tctctgtgaa tttctgacga agtccttgac agagctcggg atggaacagc ttgagagcga 4680 tcaacgactt gtcctcggtg gaggcgaaag agatggcttc cgtgcgttag aggttacatt 4740 cgggcacagt gaagaagtcg aagcactgag atcagaccaa gaagaggcag acacgcggct 4800 ctttctccac gccaagcatg cttcgatcaa ccatcccaga tgtagaatcg ttgttcactc 4860 ccctgacaca gatgttcttg tgcttggagt ttgtcactat actagaattg gctgcgacga 4920 actctggctc aaaacgggaa tcaaagatcg ccttcggttc atcccactac acgctatggc 4980 tcaacatctg ggagagagaa tgtgcgatgc tctgccagga tttcatgcca tttctggttg 5040 cgattccacg agctctctta gtggaattgg caagaaaaaa gcatgggaca tccttcaaag 5100 taacaaggat caccaggata gtctaagtct gctcggagct gcagaaaacg tcggtgctgc 5160 aactaggtcc aagtgtgaag rgtatgtwtg caawctttac cacaagagaa agtcaacatc 5220 agctgatgag ctacgctact tcctcttttg ccagaagaaa caaaagagcg aaaggcttcc 5280 tccaacatcc aacagtctgc aacatcacct ggaacgggcc aactaccaag ctcttgtatg 5340 gcgtcgctcc ttgtaggcaa tgcaggacct cccgaggcca gaagatagcg ggtgggagag 5400 gtcagggatt gagctgaagc cagttctgat gtccaaggac cctgccccaa gcagtttgtt 5460 agagctctcg acgtgtggct gcaaatctgg ctgtcagagg aactgttcct gcaataacaa 5520 cggactctct tgctccgaag cgtgcagctg catggctgga acagactgca ggaatcagta 5580 ttctttgcga ctagcatgca atgacctctc cgattctgac gactcggatt cagattctga 5640 ctgagtaata cacgtaagta aaaaatagag atgataatat gaacatawtt atcttttttt 5700 cataacattt tctacttttt ataggagcgg gcttcctgtg gtgccggcta gggataaata 5760 aaggcagatg gatctccagc gacacggaca tcagctcaga gctcaaagca gccattagat 5820 gagtggaaaa cagtcgcctt gagtagactg aatccgtttt accggcaacg gcgggatttt 5880 cgtaaggaaa agcagcattt tttacacgtg actgatcacg tgacagatca cgtgactttt 5940 ctttatctgg ggcgtacttt agccatttcc ttagaatgtt gatatgtata aaaactgtaa 6000 agttatagct tttctatgca cggaaaatgt aaaaaaacgc gccctcttaa tgtgagcctc 6060 gtttccatgc aggactacga gtgccgtaat aaaacacgcc catatctttt gattgacacc 6120 acaaatcggc tttacgaact agctagcgtt gttcaggggg tcttgttcta taagattcca 6180 ctgtcaaacc ttttctgtgg tgagggttga gcgaaactgg aatctgctcc ctgacta 6237 // ID Troyka-2-I_NV repbase; DNA; NEM; 3430 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Internal portion of the Troyka-2_NV LTR retrotransposon - DE incomplete consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Troyka-2_NV; KW Troyka-2-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3430 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3430 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3430 RA Kapitonov V. and Jurka J.; RT "Troyka-2_NV - a family of autonomous s from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [3] (Consensus) XX CC Consensus is incomplete; LTRs are not known yet. XX SQ Sequence 3430 BP; 929 A; 979 C; 752 G; 770 T; 0 other; agctctcatc gggcaccaca gcaatggtgt ctcaacaaga tagaaactgc gaactcattc 60 gaaaaatggc gggaaaacct actatatacc ttatccctgg atagcaactt cgctcccttt 120 ctcgtccatg gcgtctcctg ggagaagaaa attaaaacaa cgttgacgag aggttttcaa 180 gacgatgagg aatcagttcc agcagccaag tgcctcactg cccaacaaaa caccaacttt 240 ctggaattaa tgcttagcca gattaccaat tattgtcctg tgatttcacg caacaccatt 300 gtaaagaact ccacaactgt cgactcagtg tggcactgca ttcgctaaca ctatggcttt 360 caagtgactg gatctcactt cctggacttc accgacatct attttgagcc taacgaaaaa 420 ccagaagacc tttaccaaag tttaatggcc tttgtagggg acatactcct ccagaaaaat 480 ggcatctccc acaatgggga atcttacctg gcttaggcta atacacccaa gcctatccaa 540 gcttgtgaaa cagcgatacc gtacggagct ccgatcccgc atcttggcct caattaaacc 600 agaaatttca caagcactct cctcactatt ggatgatgag atacacggca cagaagaaga 660 aaaaataatg cgcacggcca ctcgaagctt tacgaaaggt ctcaaaccga ggtcttcaac 720 acaccccgat aagcgctgcc ccttatgccg ccaggccggt cggccaaata aacattttct 780 cagctcgtgc aggtatttac cagaccaaga ccgccactac atggctaaag cgagacaaat 840 catagggatc ataaaggagg atcacgaata cccagcctgc gacttccctc gcccaccttt 900 gacagaagaa gaagacgacg atgcccagca tgttcaggaa gcatccgctg cccgaccatc 960 caaacccgac agtcaacatg acaggcaaca tgatacgtct ctctttcgcc acaaagcttg 1020 gtgcccatgt agagtctacc tcccagtctg cacaccaagc tgatggttca tccccccgag 1080 gcccacacaa cttagcgttt gaggggctag ttgtagagaa tctagatgtg gacgctttag 1140 caggaacccc attcatggaa accaaccatg tcgctgtccg acctacgaag agacaaatcc 1200 tacttggaga cggtaccttc ctcgtctatg gctccccgtt gtaccccaat aagtcaactg 1260 cagcacgtcg ccctatggtc ttacgagctc cccaccacta caacggtctg gccgggcgaa 1320 tttattgagg tcgagctacc cagtgacgca ttgcctgact cagagtacgc cttggagccg 1380 cggacagact cgcctagcac ccgtgacctt aagacctccc acatttggcc atcccctgcg 1440 atggtgacaa gtgtagcagg caggattcgt atccccaacc gttcgaacga gccccaattg 1500 ttaaagagga attaacattt ctgtcaaata aacgaggtgt tcacccccac tgtggatcag 1560 ttccaacaac accgacaccg gtcaccgata cccatagccg aagcatccta cgtcaggcac 1620 tccgccaaag tccgtataga tccagataac ttgttaccac ctcaagttaa atcccagttt 1680 tattcattgc tagatgagta cgacaaggtt ttcgacccca acatccaagg ctacaacggc 1740 gctgcaggcc catttgaagc aaaggttaat atgggccccg tggagccacc tcaacgcaaa 1800 ggccgccttc cacagtatgc taggggcaag ctagtcgagc tgtaagaata gtttcacgag 1860 cttgaacaac taggtgtttt caagcatcca gaggacattg gtgtatccgt ggaatatctg 1920 aatccatgaa gaattgcggc gtagccacgc tcttcaaggg ggtgcgcgtg tatgtaagat 1980 ctgccatggg aatgcaggct cagagacagc cgttgaggaa ctcatttacc gcgtattagg 2040 cgactgtctg gaggagagta ttgtagtgaa gatagcggat gacttgtgct gcagcggcaa 2100 tacacctacc gagctaataa acagctggca aagagtcttt gatgtactgt acaagtggaa 2160 tcttcgctta tctgcggcaa agaccgtgat cgacccccaa tccaccacag tcttaggatg 2220 gatctggagc tcaggcactc taaaggcgag tccccaccgc attgccgcgt tagcatcctg 2280 ccccgcccca gagaccgtca cacagttgag atcatttatt agtgcgttca agatcttggc 2340 acgtgtcata cctcactgct ccacacttct agcgccattt gacgacgcta tcgctggtcg 2400 tcagttccaa gagcccattc cttggactga tgagcttcgc tcatccttca ataaagcaca 2460 aagcgcccta ttcaagaacc gcgccatcac ccttcctcga cccgatgacc agctctggat 2520 agtaacggat ggttctgtcc gtaagccagg aattggcgcg accttgtacg tcactaaagg 2580 cgagaagcta cacttaaagg gctttttcag cgctaagctc cgtggtggtc aagctacatg 2640 gctgccttgc gaggtcgagg ccttatcaat tgccgcagca acgaaccagt tcagcccatt 2700 cctgatacaa tcacatcaca aggcgtgcat actcacagac agtaagcctt gcgtacaggc 2760 ctatgaaaag ctataccacg aagaattctc caacagtccc cgcgttgcga cctttctgtc 2820 cacagtgagt cgctatcaag catctgtaag gcacgttgct ggtgccgcta tcctaccatc 2880 tgatttcgca agccgcaatg cgcctgtatg cgaagatcgc tcatgtaaag tacgcgcatt 2940 cgtcaaccga ctcgaagact ccgtcgtccg cagagcacct atacaggaca tcatgtccgg 3000 ccaggagaga ctgccgttta cgagcagacc agcttggctc gcaatccaat cccaatgttc 3060 tgacctccgg cgcgatcatg ctcacctaac ccagggtacc ataccttcca agaaactcaa 3120 caacatcaaa gatgtgaagc gatatttaaa cgtcgctacg gttgcaaagg atggcctact 3180 catcgttaag cgggaagacc ctttacgtcc gactcgcgcg cgtatcattg ttccacggca 3240 agttttagat ggtcttatga ctgcgttaca tatccaacta tgtcatccat caagtcacca 3300 actgaagtta gtcacaaggc gctatttgtt tgctttggac atagataaag caattgatcg 3360 ctttacgcac aacaatcacg tctgcgcctc actccgccag acccccatag cacgaagtac 3420 acatgcctct 3430 // ID Mariner-2_NV repbase; DNA; NEM; 2441 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-2_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Pogo group; TA TSDs; Mariner-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2441 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2441 RA Kapitonov V.V. and Jurka J.; RT "Mariner-2_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 610-610 (2007). XX DR [2] (Consensus) XX CC This transposon belongs to the Pogo group of the Mariner CC superfamily. The genome contains only 3 copies of Mariner-2_NV. CC The transposon encodes a 444-aa transposase (2 exons). XX FH Key Location/Qualifiers FT CDS join(384..957,1157..1914) FT /product="Mariner-2_NVp" FT /translation="MASKQARIELSLKKNVLKLAAGGSSQRKLADQCKVSK FT TQISNIIKKKHAIEVAFEQNSNSEKRRFVSAPNDRINDAIWEWFTRCRAMN FT IPITGPMIQAQALKYAETFGIGDFKASNGWLESFKCRKNIHCSILSGESSS FT VPTETVDECQSRLEALCEGYRAEDIFNMDETGMYYRALPDRSLVVRGADCH FT GDRQMRLQNRKILLFEDNAPSHGMEDIELTNIKVVFYPPNTTSRLQPLDQG FT IIKNLKAFYRKKLLEKVVSAINEAEFSDACSVARKVDVLDCCMWIPWAVRQ FT IKPETVTNCFTHAGYPRSLLTDDRLVQGAQNAAEPDLQHLIETVATGLNIT FT EPLTDDDFVHHDDQVPTEDDDNENWVPEVIQEHVLGKDSVPETADDDEECD FT ETSDGSGSLEPMSVIKDAKTALYWAQQLKLFSLEKNMTGIFPISSELEDN" XX SQ Sequence 2441 BP; 758 A; 510 C; 514 G; 659 T; 0 other; cagtaaaacc tgtccttaag accacctgcg tactgagacc acctggctgt aaagaccact 60 tttctccggt cccgtgaaaa tttacatgta aagtatagga ctttcaacct gtgtactaag 120 accacctgtc tattagggat taagaccact tttttaggtc ccttgaccta aaagtgacct 180 gtctattaag accacttaat ccactgactg acaaaatcat ccgcgatttc tggttcatga 240 ctgctagtga tctctaaaag tgacctccct ggtaaaaatt acatcccata catattaaag 300 tgacctccct ctctaaaggt cacacgtgac cctgagcacg ctcgcatcct caagtcacct 360 ttgagcccgg cctttgagtc aagatggcga gtaaacaagc taggattgag ctctcactga 420 agaaaaatgt tttgaagcta gcagctggtg gctcgagtca acgaaagctt gctgatcagt 480 gtaaagttag taagactcaa atatcgaaca tcattaagaa aaaacatgca attgaagtgg 540 catttgagca gaattcaaac tctgagaaaa gacgcttcgt atctgcacct aatgaccgca 600 tcaatgacgc tatatgggaa tggtttacta gatgtcgggc aatgaacatc cccattacag 660 gcccaatgat acaagcacaa gccctgaaat atgctgaaac gtttggaatc ggtgacttta 720 aagcatccaa tggatggctg gaatcattta agtgtcgcaa aaacattcac tgtagtattt 780 tatcgggaga aagcagcagt gttcctactg agacagtcga tgagtgtcag tcaagactcg 840 aagctttgtg cgagggatac cgtgcagaag acatttttaa catggatgaa acagggatgt 900 actatcgcgc actaccagat cgatctcttg ttgttcgtgg cgctgactgt catggtggta 960 aacactcaaa agagcgactg acagctgtat taacgtgcaa tatgacggga gaattcacag 1020 acttggatta taggaaagtc tgaaaatcct agatgtttca agaatcttga taaaaactca 1080 ctccctgtgg tatacaagta caatcgaaaa gcttggatga catcccctct ttataccgag 1140 tacattcttg atttagatcg acagatgagg ttacaaaaca ggaagattct gttgtttgag 1200 gacaatgctc catcacatgg gatggaggat atagaattga caaacatcaa agttgtattt 1260 tatcctccca acacaacatc tcgattacaa cctcttgatc agggaattat caagaacttg 1320 aaagcattct atcgcaagaa attgctagaa aaagttgtct cagctatcaa tgaagctgaa 1380 ttttctgatg cctgctctgt tgctcgtaag gtagatgtgc ttgattgctg catgtggatt 1440 ccttgggctg tacgtcaaat aaagcctgag acagttacca actgttttac acacgcaggg 1500 taccctaggt cgttgctaac tgatgacaga ctggtccaag gcgctcaaaa tgctgccgaa 1560 cccgatcttc aacacttaat tgaaacagtt gcaactggct tgaacataac tgagccatta 1620 actgatgacg attttgttca ccatgacgac caggtgccaa ctgaggacga tgataatgaa 1680 aactgggtac ctgaggttat tcaggaacat gttttgggta aagacagtgt accagaaacc 1740 gcggatgatg acgaggagtg tgatgaaacc agcgatggca gtgggtcact tgaacctatg 1800 tcagtgatta aagacgcaaa aaccgcacta tattgggccc agcagttaaa actgttttct 1860 ctagagaaga atatgactgg aatctttccc atatcttctg aacttgagga caattaaaca 1920 tctgaattag tgaaagcgaa atttgtcaag cagaagaact ttactgattt tttcaaatca 1980 acagtacatg cagataaaac ctcagggagt acagctgtaa gctcctgcag tgtgggtgat 2040 gtttttttgt ccacagaaat gaaaccccct atccacccat gaaagcagca agtattgctt 2100 ctagtatgac tagagctgaa gcagatgtac atgtaaatcc tctagatccg cccatcaaac 2160 caccaaatgt tacatctagt ttcagtatga tcagatgctg cgacagggta aatcatgcat 2220 acatgttcta gaaaagtatg ccttaatatg attacacagg ttgtccatgt ctaactttca 2280 gatcgaaata aaccttgaat atgcaattac agttttttgt attttcgtta aaatttggag 2340 aaaagtggtc agcaagtgaa cctctctact aagaccacct gtctattaag accacctaag 2400 cccggtccct tgggtggtct taatagacag gtttttctgt a 2441 // ID DNA-4-3_NV repbase; DNA; NEM; 1825 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-4-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-4-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1825 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1825 RA Kapitonov V. and Jurka J.; RT "DNA-4-3_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 402-402 (2008). XX DR [2] (Consensus) XX CC DNA-4-3_NV elements are flanked by 4-bp targets site CC duplications. CC Termini of DNA-4-3_NV differs CC from elements that belong to the Chapaev, Kolobok and piggyBac CC superfamilies, which CC are also flanked by 4-bp TSDs. It is likely that DNA-4-3_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-4-2_NV. CC In addition to 4-bp TSDs, these transposons are characterized by CC the 5'-GGC and GCC-3' termini. XX SQ Sequence 1825 BP; 581 A; 357 C; 376 G; 511 T; 0 other; ggctatgtgt acaatgttga cactcaaacg tgccgcagcg cattgccgac taaaatctcc 60 gaaaagctag acatccattc aaaaatagcc actcaaactc aattatttat atgaacatta 120 acctaaacct taattatagt ttatatttta gcaataaaaa cggaaacagc gatcgaaaaa 180 gtcgagaatt caaggctaaa agtgttaatt agcgttacat cttgtctaat cggctataca 240 aaaatcgttg taaaaatgct tagagacacg ctattgatat aaaaattgca ctttcttaat 300 gtacttacat ttgagattac cctcagctta gtttttttct tgtaaaatag cttcaagtgg 360 ataattttgc agtaactact tttcacataa aaacgtcatg tgaattgtcg atgaagagaa 420 aacatgtatt atgacggcct ttgttagaca atatcataat ttttaagtga tagatgttgt 480 gtacattagt tgcagtttca ataaattgcg attgttagaa accttgaacg cttcccttgg 540 agtagttctg gattcagtat ctcactaact tttgtcatgc tgcttctatg tgactaacta 600 gtctgcttat taaacacgct atgtagcgtg cgttaagata tctgataacg caaaaggtgt 660 cgtgtcaaga acacgctatt agccgtgccg ccgcaccctg taaatcgaat gtataacacg 720 ccgagtcgtt agcacgctag cgtgtcacta gatggcgtgt gtactcgccg agttttggta 780 agtttattaa cgtgatccca cacgcaagaa cacagcatcg ctctagctat ggacacggat 840 agttcagtca ccggagcgga aagaattcgt ctttggcgag aaaagaagcg acagacaagg 900 gccaaatatc agaaggacta ttacagcaag aatcgcgaga aaatcaatag aaaaattcgg 960 ggaaaggcca agctcaagag agaggagaaa cgagctaatc ttcctgacga agtcgcaaat 1020 cgacgactaa aatggcggca gagtaaagct cgtcaaaaag ggaacatcta catggatata 1080 cgttgctagc ttagagattt ctatctctag tacttcgagt tcttgttgcg tatcctcatt 1140 cgttaatttg tttttgaaga aatggtcaca cgaacatacg acgcgaaaca gctagaacac 1200 gaacacgaat agctttgaga gattaaggaa tgcgctcggt ttttacattt atttgagtgg 1260 tattgcacat acggatctca ttccttctca ttaagatcga cgcagtcgta gaggacgttt 1320 tttatgtggg gcggaaaaac atcaacatcg tgatttggcg aaagccccgc taaagatgtt 1380 gtaaagccat ctaaaaaaat agaagtacat taacaaattg ctgaatattt ttcttttctt 1440 ttatcataca ccgtttcgtt tctggtttaa aaaacaattc actacgctca tagggaaatg 1500 attagcaata tcttcctcca tagcaatgtg ttatggcaag aaattagcaa gttgttctaa 1560 acttgaataa acaatgtgcg tgcagtgacg tctcgtgcgt gttagtgaca tgctctgcga 1620 attcgccata tctacttacc agcgtgcatg gcaaacacag ttctgaccgt gtccaaaaaa 1680 gactctgcgt gcgttgacac aacgtaaagt aataggatta ggcttaggca cgctgaaccg 1740 tgcaaattac acactgatac gagccatggc acggtccggc ggcgtgcatg taacacaatt 1800 gggtaccaac attgagcaca tagcc 1825 // ID DNA-3-2_NV repbase; DNA; NEM; 248 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-248 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-248 RA Kapitonov V. and Jurka J.; RT "DNA-3-2_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 392-392 (2008). XX DR [2] (Consensus) XX CC DNA-3-2_NV elements are flanked by the TTA and TAA targets site CC duplications. CC The consensus sequence contains 51-bp TIRs. Termini of DNA-3-2_NV CC differs CC from elements that belong to the Harbinger and En/Spm CC superfamilies, which CC are also flanked by 3-bp TSDs. It is likely that DNA-3-2_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-3-1_NV. In addition CC to 3-bp TSDs, these transposons contains the 5'-TGC and GCA-3' CC termini. XX SQ Sequence 248 BP; 76 A; 53 C; 48 G; 71 T; 0 other; tgcctagtgc acactagtga cataacgaca taacaacata ggcgcgcgca ctcttttaag 60 cccgacataa cgacatggac ataatgacat aaaagaaaaa aacatgtttt tttctcttat 120 gtcgttatgt tcatgtcgtt atgttgggct tatgtcaaaa tgtcgaacca ttcacacttg 180 aacatatgaa cataagggtg cacgcgccta tgtcattatg tcgttatgtc actagtgtgc 240 accaggca 248 // ID Polinton-N1B_NV repbase; DNA; NEM; 15049 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Polinton-N1B_NV non-autonomous DNA transposon - consensus. XX KW Polinton; DNA transposon; Transposable Element; Nonautonomous; KW 6-bp TSD; NVREP118; Polinton-N1B_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-15049 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-15049 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-15049 RA Kapitonov V. and Jurka J.; RT "A family of Polinton-N1B_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-FEB-2011). XX DR [3] (Consensus) XX CC Portion of this transposon was originally reported as the CC NVREP118 unclassified DNA transposon [1,2]. XX SQ Sequence 15049 BP; 3277 A; 4449 C; 4205 G; 3096 T; 22 other; ggggggggsm ctggggactt tcatagacmc cgaaacscgt ttcscgwaga ttaawaattg 60 ctwattatca atctacgtcg ggacacttcg cgtagataaa taattggcaa ttatcaatct 120 acgtcgggcg gggctctggt agataaatag tcagcaattg ctaacctgcg tcgggtgggg 180 ttcgggtagg aaggtcgggc aagagcgcgc caagggggga gcctaagacg ataacagggt 240 ggctgccccc cccccccttc gtgtggtaac atgtgggaac caaggcacaa gatacaagca 300 caataaacgc aaaacgtctt tattcgtctt tatttacaaa cacaataatg cctagtaacg 360 ccgtttcgcc caatatcagg gctcatcagc acacctagca cacaaaaagt acagatgtgg 420 acggcactag aggctcaagg gatcgcaaaa acgttccaag cttgggacga aatcgctaag 480 cccgcaatga ctcaagggat cgcaaaaacg ttccaagctt ggcacaaaat cgctaagccc 540 gcaatggctc aagggatcgc agaawcgttc caagcttggg acgaaatcac taagcccgca 600 atgactcaag ggatcgcaaa aacgttccaa gcttgggaca aaatcactaa gcccgcaatg 660 actcaaggga tcgcaaaaac gtkccaaggt tgggacaaaa tcgctaagcc cgcaatgact 720 caagggatcg caaaatcgtt ccaagcgtgg cacgaaaccg ctaagcccgc aatgactcaa 780 gggatcgcag aaccgtgcca agcgtggcac gaaaccgcta agcccgcaat ggctcaaggg 840 atcgcaaaaa tgttccacgg ttgggacaaa accaatgagc acaaaaagca cgagcaaggt 900 gaggcaatgt agctttgtag gttttcaaag ctatataggc cccacggtcc gacgctacat 960 gggtctcggc ttaggcagct ttggaggtcc ctaagcgtcc gccactccta atcttgatgg 1020 ctgggagcct gctcatctct cctcggctga agctaccgcg cgctccgatg attctttcga 1080 gtgagactgc cattccatga cgcggcgcgc aatgcggccc aatccctcgg cgccaaggcg 1140 ccgggacgag taattcttcg tcgtactcac tgttgcttcg gcgagcaatg tcgtctatag 1200 cgttctcaaa ctcgtccatg gtagagatgg cctgccgact tcgtcgggga aaccgcttgg 1260 cagcagtgaa ttcgctggca tgtaatggcc cgttttaggt agaaaaacac cggtctgtca 1320 ctcacatgac gttgtgcaaa cattccgtag acaatcggcg ccgaagtcat ctcgtgacgt 1380 tgcgtaatcg caatctaaac gtttcgagaa cgttctgaga gagatcgtgt tgtcgcattt 1440 cgtagcatac acttatacga cctcctaacc ccctcttggg tgaaagagct tcgcgatatt 1500 cttcgggagc ccaagggctg tgagagagca aaaacagcgt gctcatttaa aacgtaaaca 1560 agccggtaat ccaatcacct tgtgctaagg gtgaaaacga ggaacgtgga ttggaccgcc 1620 amcctacgga gcgcggaata accgtttttc ggccgtaaat tcaaagccgc tagcgtggcg 1680 tttaaacctg agttttactc gaacacctcg ctcccgaact ctttgcgaat ttctcgcagt 1740 ctctttttca tcttttcgcg tgtctccagg gactttctcg gggccctttc ttgctttttt 1800 tctcacgcga tgcgaggccg tgccgagctc tgatagcggc cttgagcgcg tagtatctct 1860 cttgctcccg aagtattagc cgaaactctt cgtctgagat atgcccgtct tgcagagcct 1920 tagagactag ctcgctgatc gagtttttct tactctccgc taaaaccatc gtgtcttcgt 1980 gtttagccac cttgctcgta ggacccctag agactatccc tgcgcccgcg cccacgacac 2040 cgaccagccc agcgacccct gccagcggac cgccgaccag aacccctatc ccactcaaag 2100 agacccctac sccggcgctg gaaagcgccc ctgcagcgat gccggatgcc acagacacag 2160 catgggtaac ggcaaaggcg cgcttatact ttttccgcac ctgtcgatga tgcgttatct 2220 cgttgtctag aaccgcctga gtgtcacata ttttctgaag tcggaagctt tgcacgtcgc 2280 cgccgcagtg catactggga agcgaggggt atatggcacc accgctaacg tcgctgtttg 2340 ccatgtttgt tatgccggaa ctaggttagc tctaatacaa ggcgaacagg cttgccctta 2400 aagtccaccc gtctaccgca gtcatccctg atccatattt ggatactcga gacaaactca 2460 gaggaagatg ctgcgacaca aacggggacg tcgggtccat agacgacttt ctcgtgcggt 2520 ctcccgcggg tttctgggca agcgagaacg tttgaaggct cgcctaagga gaggcattgc 2580 gtgcgatcta cgatatcgca gcagatgtag agggcctcta ttttcggcaa agcaacctta 2640 agtgcgggtt cccccaaggg cagtgcgagg ccccgctccc ccaactgatc gtctttagcc 2700 tctaggccaa atagtgcgca aagctcggca ttcaggaacg caacgccatt ggacatgagc 2760 gcgatcttcc cggtgagggg atccagctcc gcggtcagaa tcttgctttc agcgcggttg 2820 atcgtttcca cgatggactc ggccgtgtgg tgcccggctg gcagagtagc gatgggcggg 2880 agggcggcta tagtcgttat ctgatgctcc cgctcgagat tataccagct gttaaacagc 2940 gagcactgcc ggagcgccac gaagcgtggg cgccttatcg gccgctcgaa gaagagcgtc 3000 tgttcgcctt tggtgagcac agtatgtagg accaccattg tgttgaacac agcccgcctt 3060 cgtgtttaac aggactgagc atggattggg aaggctggcg gatgctggac gaggaggcgc 3120 ccccgaaggg gggggaggag gcgaaaaagg cggcaactgc ggcgggagcc tctatagccg 3180 aacatatcaa acacgctata gccgaacaag tcaaacacgc aaaacccggt ttccctaggt 3240 ctctgaccct cgggcaaaag ctgctctacg ccgtgcccgc gacccccgtg gagagcacgg 3300 cctcagacat caccccacta ctcacgcagc tagagataca cgtggctgag gacaaatcat 3360 tcacgactag ggtccgagac atattcaaag agacagtagt cacgcacaag tccgccaagg 3420 agtctcgccg gtggctatcg gagccttcct atgggtactg gccacagcaa ctcaactttg 3480 cggtctggtg cgcaaccgcc ggatgcgggg tgtccctaac cgaccccgct ttcgccacgc 3540 tcccctctgt catcagggga tttctaaggt ttcacgtcta ctttaccacg cggaggatac 3600 tctacgagct cggcgccccc ctgcctggcg acagcccgtt cacgcaaaaa ggtaacccct 3660 acaagaaagc cgctttcgag cgtctatgta tagagttcgg tttgccgcgt aagccggact 3720 tccgatggaa aggcgggcgg aaccacgggc taggcgatgt gtttgtgttc tacccggggg 3780 aggggtatcg caacgtgcac gtgatccgtg gctacgacac ggcggcggac gagtacccga 3840 gccacctcaa tctgtttagc gacgaaggtg ggacgtacaa tagtgggaag caggtgggtt 3900 tcatacgcaa cgacgaccac gggggcgtgc aatatagctg gtttgcgcct cccaaaggtg 3960 aggggctgac aaaagcaggg ctaggaagac tcgatcgctc ggtcgaggcg ttcgtctacg 4020 cagtgcttgg cgcgcaggta aacgtccgtt cctctatcgc gggggccggt gggccggcca 4080 tggaggcgca ggcggagttc acgaagctgc ttgaagacgc gatcatagaa aacgacatcg 4140 ctcaaagcgt gcaaaggtac cagttagccg tgcaggaggc caaggtgaga ctgagtcttg 4200 cggtcgcacc aggagtgtgg ctgatgccga gcgatctggt gataaacacg caaagcgtcg 4260 tgggctacaa caataaactg cagaaagcca cagactccat gacgctcggc gcaaacgcga 4320 tcaacaccga gacaaagcca gtcggtgctc ataacatggc cggtgggcat cctagggtgc 4380 aacacgtgac tgatccgagg atcgaccgcg tgacgttccg gcggcgaagc aaggctttag 4440 cacctgcgaa agcgcacgca gagggcgcgg cgcctgcccc ctcttcacgt atgcatgctg 4500 cgcatagcat gaccgccgcc gggacggcaa gcgcgcccgg accgagcgaa aagagtgacc 4560 acaccgccct caaggcgggg ttgtcggcac tcgcggtggc cgcggcgtat tacttgttcc 4620 gatgattgct ttgcattcga cgaaccaaga acgcggctac ggctagaatg agcagccacg 4680 cattctcgcc aaggaatttc accgcttctc ctgcagcctt aaacacgaag ttcgcgatgc 4740 tgcctactag cccagggaga agctcgccta gctttttccc gatagcctta agcccgttac 4800 cgacccctct ggccacggag gagagcgacc tgccgagcga cgtcacaatg gccgcgatcg 4860 tcgtcgctac ggccaacccg atagcggtga cggtaaagcc gtactttttg aagatggctt 4920 tgatgcgctc tctgagcggc tttcggttct cgagctctcg gttttcgcgt tctagttcgt 4980 caatctcgga tagcctctcc tcgttgcgct cacgggcctc ttggcggcga ctctctgacg 5040 tgttagggtc gtcgatggtc tccctgtctg tggctaccac cccttgcagc tcttggactc 5100 gttctgtgtt ctcctggatg accgcgtcta tctctgccac ggaccccatc gccagcttga 5160 agcctttcag ctttgcaacg tcctgtcgaa cgcccccgtt ctcattgaac agctgtcttg 5220 gcttagtcca acctcctttg ccgaggttgc gaagctgtat tagcgtcttt cccctccggt 5280 ctgactggaa ccgtatcaga ttctcgttaa ggtctgggta ttcctccctg agggactgga 5340 gaccgagtct tgtcgctgca ccctctgtgg tgaacgaggt ttcagcggtc gtttgcgtcc 5400 gggccccccg cgatgacgtg ctcgtcattg ggatcgactc cccatcgtcg gggtcaaacg 5460 ggataagggg cgtcgtctcg tcgtccccck ctcgcgatcg gcggacgcac ccggcaaggt 5520 atcgtcaatg tcaacgtcaa catcacccat gatgcggcga taaatcatgc tacgctatat 5580 tagacatgtc taacagtccg caccatagtc acgtgacttc gtactactag gaatgtcagt 5640 cagcgataaa cttgaccccc aacgaacacc cagaactcct ctggggttga aagccgagag 5700 aactgttcac cgggtcactc tcaacccgtc gacggcttcc cccggcgaga cgctatatgt 5760 ggcggtccca aagctatcgg aaggcgtcac gctcgtgcct ggctccttga gggtcggttt 5820 cgatctctcc atctcaggcc aagcaaataa taccgtcgtg aacaacgtcg gccgaaatct 5880 cgtgagccgc ctgaaaatca cgtttgcagg agaaacgctc caggacacca accgctacga 5940 tgtcttcaag acgtatgagg agctttacct gtccaaggtc gagagagagg accgcctgga 6000 gcagggcata cagtcagaaa acatgcgcaa gcttcgctcc aaggctggcg ataaagcgac 6060 tagtaacgcc aaggagaacg ctctaaacgc cgcccacggg gcgaagtaca ccatcccgct 6120 agaccattct ctgctgacgg accacggcgt actgtaccca agggcgctct ccgaggcgct 6180 gctcttcgag atcacgctcg caacggttga ccagagtgtc ggaagcgatg ctaccaaatt 6240 atcctacggc atcaaaaatc tagagctgga atacgaaagc ctgagggacg acaacctcgc 6300 ccggtctgca gccgccgcct accaaaacgg cacaacgttc ttctacgagc aagtgaacct 6360 ccacaagacc ttcgtgatta gcaaagggac ggacagcata atcaacgaga gtgtcaacct 6420 gccgcgaagg tctatgagtg gtctgttgct cctctttgtg gagccataca cggcaggggc 6480 tcgcgactct gagaagttcg tgtaccccga catcaagagc gttcgcgtta caatcgacgg 6540 catgccaaac aaggtcttca gccagggact gcgccccacg gatttctgga gggaggcgaa 6600 aaggcggttc gtccgcccct cccggggggg gggggcacag cggagcgcct gccgccccgg 6660 cagtcagccc cgagtcgttc tatggcgata acaagtttgc tctgtggatc gaccttcgaa 6720 cgacggacga cagtgctatc catgggggcg gtctccgatt ggtcaacacc cgcgacggtg 6780 tgcatctcga gataaaacgc acggcaagcg gcmmgggtac cgtaaactgt cacgtgttcg 6840 tggtggccga cgccaaatga accttatgaa cggacagcta gagtccatac aatactgagc 6900 acagacacga agtgcgcgaa gcgctgcggc agcgcggtat ggacccgaaa aacatcccat 6960 ttaacgctct catcgtgggc ccgacgtcat gcgggaagac ccgattcata gtggaccggc 7020 tgcgcggccc tttccggggc aagtttgact acatcgtact cgtgtgccct acctttgtct 7080 acaacaaaac atacgacggc ttcggcgagg gcgacaatcg tctgtttgtc gtcacacctg 7140 aggcgggtca gatcgacata ctgctgaggt ttgtctccgc tgtcttcgaa ggcactaata 7200 cgctaatcat actcgacgac tgtgcggcct cgaaacacgc gccctgacca gctcgtcaac 7260 ttggcgttca gcgcgcgcca cgtgggtatt agcgtgtggg tgatcacgca gmagctcacc 7320 agcatcacga agccgttccg tgaggacatc gcggccttgg tggtcttcta tacgccgagc 7380 aaggcggaca tgaaagctat cctgcatgac tacggcgcgg agctctcaga agagaagatg 7440 aaagagtaca tgaaggccct caagacgaaa aagttctcga agttakggtt ttccttgcgt 7500 cacccttata ccatcgccct agttgaaggg taagcgcagt aaatcaccgc ccacgtatgc 7560 gtatacgtat acgtatacgc atcgatcaca ccgccctcaa ggcacgtgaa acgtacacac 7620 gtgttgcacc ttagccacgg caggggtgca tgatgagcga cgaatacttt gagagtcttc 7680 ttgagggggg cgccgccggc ctcccggccg tcgagtcgtt gggctgctcg acgcagccgc 7740 cgggacggct accggaggtg agcaaactga gatagcagac gcgagggaga aactcgcgat 7800 tctcgtagcc tcggggaagt cgagagaaat ggtaggcaag gccctgactc acgacgacgt 7860 caaacgcatg agcgccgagg aggtgaggaa gtacgagaag cgatacgaga ccgctctagc 7920 cagccggact ccagacgccc tggcagacag cttcctgaag cttcgaccaa gctagtaggc 7980 atggcgctgc cgatagacag tgtgktcgat cttcacaatg acctagtgtc cgactacatc 8040 atcaacaacg agckccgcac attgtgcgga agcctgtctc tacgctgcgg tcgtttgatg 8100 gctttagccg tcggggcgtt acacgtagca cgtcatgtga acaccgccgg aacggcgagc 8160 gctgacacgc ggtgtcaaca cgaggtagca gtcgcgtact caccagtggt ttgcccgcaa 8220 acgcacactg gcgagtctgc catcccagag tagacgttca tttgaaagct tgccacttcc 8280 tcagcaacca aatagttgca tcacaaatgg aggagcctca aggaagtact agtgcccagc 8340 cccggaacct ggcaaacaag ctgcgagcaa actgcttacg aacctgcacg tacgccttcg 8400 gcgttagtgg agaggatcac gagccccaac cacccgcgac ccggacgagt cgaagccgga 8460 aggcgcttgg caaagtggaa ccgacttaac agagcgaaga aaaaagctgt gcaacacgtt 8520 gagtcgccgg tcgctagcga gtcgcaggga cgcgagggct tgcgcgcgcg cgccgaaggc 8580 atacacacac cagtcccggg aagcaactct gcttggtcgg ctagctcggt tatcggggtc 8640 gctggtcttc tagtgtcatt gatcggcctc tacacacgta ggcgggagct agctgccgcg 8700 ttcactcgta caccagctgt caaacagcga gctaccgaag gtaccgacga cgtgaccccg 8760 ctcgcaaggc ccggccgcac agcagatcaa ggatcgtccg cttgccgccc ggcggccgac 8820 ccggacagtg caaatctcga ctgccagcat gggtaagcag acatttaaac acaagggccc 8880 cacccatatc cgcacgtccg ttcgcgatgt cgacgacgca gcaaagcaga ttacaaagac 8940 catcaccgac gccgcagtca tgaccggcct ctcgccggca tggctgggtt gggcgcaagg 9000 tcttgcgcga agacttacca aagacccctc cgcgaacgcc atgaactacg caaaaatgac 9060 tgccgccgtt gcgggtgctg tcgctttgaa gggttacctt gaggaccaga agatcctgcc 9120 catgtagtag tgcaccaatg tgtaggccac gtattagact cgtgttcacg tacacacacg 9180 cacgtgaaac gtacacacta ctcgatggcc tccatcgcga ttttggttgg tggcgccgtc 9240 ctaaacgcga ctgcattcgt tggtggcaac tacctcgcaa agttcctgtc gaacgatgag 9300 agccctgcct tagctgagaa ggagaggcac gacaaggccc tagagaatcc aacaagacta 9360 tggacgctac caacagcagc gaaaaaaatc ctcgattggc aagccaaagt cgcaagagag 9420 gggccctcgc aaagcaaaac ttcaccgaca ctgactacgc gctcaaactc tacaacagac 9480 ccgaccaaaa caatccctgg agtcgatgcg ggctcctgag ctgtccgact actacatccc 9540 cagcaaaacg cagaaaaacg ccgagttggc gtacattggc gccggcgctc tcgccatcgg 9600 ctacacagct agccgcttgc tgtgatgcag ctgccgttcc ggcgctgcat ctaggcggcc 9660 tttttccata ctgcgcgtat acgtatgcgt atacgtatac gtataagatg attgcagacc 9720 agttgtggag tgctatgcac gaggtagcag ccgctgctaa gcgagtgaca ccgaaggtgc 9780 cgtcgatggg tgggttatgt agctttggtg acattgctaa ccgaagcctc gagttgtggc 9840 gcgcagacag ggagtgcgtt aagagattcg ccaatgtcgt tctccgaggg cctaccgacc 9900 tcagaaagac cgcctcggca ctacccgagc agacggcaac cgcctgttgg agactgatac 9960 acctgttgca gtacattgcc gacacgtaat ggcggcgaag cgcatgtccg acgaagaact 10020 cgatgcgttc cttcgtccta tatactacgc cagaggtggc ttccagggag tgaccgctct 10080 gcatgccaaa cttcccaagg gctcagcctc catagatcga gtgcgcaagt gggtaagctc 10140 gcagcccgtc gggggctaca cacagacacc ccctcctccg actacctacg cccacttctc 10200 ggagcagata ccaaaccgta tccaccagtc ggacctgcta ttcttgccaa ccgaccgcgg 10260 gtacaagtat gccctgactg tcgttgacgt tgcttcacga tataaagccg cccgcccact 10320 gaggactaag agcgcggccg tcgtctcccg cgaactcgct gacatctatg cagagggacc 10380 tctcacatgg cctaaagtcc tcatggttga tgacggcacg gagttcaagg gtgctaccac 10440 aaagctccta acagaccacg gggtggaggt ccgacgggct gagccagggc accacaggag 10500 ccaagctttc gccgagtctt tccatcgctg gctggcacag cgcctatttc gtgcgcagta 10560 ctcgaaggag cttgcatccg gcgaaacaaa ccgcgagtgg gttactgctt tgccaatcgt 10620 catctcggac ataaacgcaa cgaagactcg catgactggc tttgcgccta aagacgccat 10680 aaagctgagg cgcgtgcctc tcaaagccga aaagcccccc ttagaggtcg gaacggaggt 10740 gtacatcgcc gtaaacgagg aagacctcca ggacaagggc cgacggcgag cgacggaccc 10800 gtggtggaca agcaaggcat acccaatact aaagagggtt atggagcccg gacagccagt 10860 gttgtattac acggcgtact ctaagcacgg cttcacgcgt tcgcagttgc gtagcgtcac 10920 gctagcgtga tcagcgcttg tgccttctat tgcagctaag gcacgtgagt ctgacattcc 10980 acttgtagtg accctgactg tcgtccagcc ggtcgatact gaagcattgg ggatggctct 11040 tggtgtaccc ctgaagcaga agctgagtgc cacagaccgt gcacttcttt tccgcgtcag 11100 caatcatgcc gagtacgtgg tctaccgtca gaacgtggtg cgatcccgtg tactttgtgc 11160 gacccttttg cctgtcgtct atagcgtatc gcttgattcg cgctataata gctcttcact 11220 gggcgtagcc tgcagtcctg cgggaaccaa ggcaccgggg gtgttatcgg gggggatcag 11280 cggactatct ggcggcgcgc cgcacgcggg aggccgcccg cccccgcccg ccgggcggcc 11340 cgcggcgcgg cgggggggcg ggggggggcc cccggccccg ggccgccgcg cgcccccccc 11400 ggccgccggc ccggggcgcg gcgccgccgc gcggccggcg gcgcccggcg gcgccgcgcg 11460 cgccgggcgg ccgcggcccg ggggcggggg gggggggcgc gggcggcggc cgccgcgggg 11520 ccggatacag cattcgtgat ccagccctct aagctgtggt ccatgataaa cagacgtctt 11580 ggagtctgga tagtcttgcc ctgcaccggt ggacgtcccc cagcccgcgt tcatcttcaa 11640 cacactacct gacacggccg cgtggcgaga taccctagga tggcgcgtag cactttagtc 11700 tgtaccttac agcactcgtc aatgatgtta cttctgcgag acggtcgagt ttgtgcccca 11760 gctcggaagg tctccactcc tctatcggct tctccgctgg tatgcagggg tgtggtggta 11820 ggtttgagcc tggccggcta gatacatctt tgcagaggtt gcggccacta gatcgcacgg 11880 cagactcggc gcagtgcttg gctccttggt caagctcccc gacttcttcg gaccccaagc 11940 cgcttcgggt cgccactcgt acccaggctt cttgtggcgc cactctccat acctcggatt 12000 tcgctccacg agctttacac cactgggcac cgcctttgcg tatatggcat ctgtgcacac 12060 tcggaggacg tcttcgcgag ggatccgcct caacatgcgt cgcaacgcta tgtttgtgta 12120 cgccaagacg aaggccctga tatggtacca ttgtgagcgt cggacaccgt ctttgtattg 12180 gatcagatga gccccgtcgg catgctcgaa gttaagtaag tggtcggtgc ccgcaaggag 12240 gtttgtcaga tacgcggctt cttcacggtc gcggactacg atcgaggact cgtcgccatg 12300 gcgagcgcac ttgcctacga aacggacagc gagatctcga ccctcagggt actgcgagtc 12360 ttcgccgccg gggcggcacg cgatggagtg ggggaacttg atggagtcct tttttccgac 12420 gctatacaac acctccctcg ccgtggccat gacgaggtca cccgagtcta acaggtcctt 12480 gagctctggc gtggtgatcc agccctcgtt ttgttccaag tgctgcccta ccctcccgga 12540 agtgtagggg tggcaggcct cagagaactc ccactcggtc agctgaatgg ccccggttag 12600 ttgaagaacc tcgctcaatg gccgtcccac aacatccgcg atacgataca cgttcgtagg 12660 gaagccgtat ttccgtacca aatcaatggc gtccgaggcg ccgccggaga gactgtcctc 12720 gcatcctagg tacgccgcac gcatgtcgat gtgcgcatga ggctgcgccc taagtttcct 12780 tgctattcca cattggactc aaccgcgccg ctcgccagac gtccctgtat taaggggcgt 12840 tggcctgatg ttctctcttt gggtccactt cttgaagcga taccctattg caccgcccat 12900 cgagtgcgta gcttcgttgg caggctgggt gatcatcagg gagccttgag gatcacatcc 12960 tgtctcgtct gtaaacgccc tgtcgatagc cgctccgtcc tgtccgatcg gtacagtttg 13020 ccctcgtgcg tgactataac acgcccgcac agccagatcc tcgtgcttct ggggatcgcc 13080 ctgtttatga agcgaatgag cacctctcga cttttgcctc gcgcgttttt gtggcggcac 13140 tggtaggcct tctcctgaca taacgaacga agctccccct agcctcgagt ctaggccgtg 13200 gacgctcgtg atcgcaggtg gttcggtcgg aagctccgcc caggcgtggt tattgtggca 13260 agggatagtg acccttgcct tagtcttgta cttccccgag tcccacataa cgttgcccag 13320 ggcgtccacg gctactagct ttacctcgag cttcttttcc atctcaaaga ggtcttcttt 13380 ggtgcatccc gtagtggcca gcttctaccg ctcgaggatc ttgcctcgtg tcttggttag 13440 accgaggggc gcgaggtgcc gcgattcctc aagaagtcgg caacataact cacaacacag 13500 ttagcgaagg tgtcaccccc ccctcgctca aacattggcc caggctcacc attttgctca 13560 ggtaaagggc gaagctcgta tctcacgtag cgaggtactc tcgtcctttc tcccaaacac 13620 ccgcatcgat gccttccagg gcgccgactg cgatttggtc ccctcttttg actaatgacc 13680 caccaatctt gtgctccgag cgcccttcct cctctgtgat tggcgccaat ggctctgcgg 13740 gggccttaca acgaccgtga gagtctgtaa cgccggtcgg ggtctaccat ctcaagcacc 13800 ggtggcaaca ctgcgtttgc ccgcagagac tctcgctcgt gcgagaccca ccacaccgag 13860 ccatcgtcat taatatcagg cccccgcata accggcttta gagcaatgac acctgctcca 13920 ccaagatctc gtatctcctg gtaaacaccg gcgcttatgt cttggccccg aagagtggca 13980 tccacgcttg ggaaccgaag atgggcgccg ccgacgaaga gagaatagta cttctcgggg 14040 tctaagccct ctgggccctt ttgccgccgt tccagcagaa tgggtcgaac tcgcgccaga 14100 cttcctctgg ccgcgagctc gccggcatga gcggcttaag cagcttgcgc ttggcatcct 14160 cggggatgcc ctcgtccagg atgttctgga ccagccctgc cagtacggcg ggcgcctctt 14220 tgtcaggcat gctattgaga atctcctcta tgtaagcgtc catgtttggg tatgccttgt 14280 gccacccagt ctctaattgc ccgtatcgca gccctgcggt atcagacagg acgggtattt 14340 gggtatgcct tgtgccaccc agtctctaat tgcccgtatc gcagccctgc gtatcagaca 14400 ggacgggtat ttgggtatgc cttgtgccac ccagtctcta attgcccgta tcgcagccgg 14460 cgggacgagt gtttgggtat gccttgtgcc acccagtctc taactgcccg tatcgcgggc 14520 tgcgatgtca gacaggacga gtgcgaacca ttcccgagcg cgcctctcga tgccgcgcat 14580 cctctgccct acacgattcg ctccgcaggg gcggcacaac cgcgtctccg actgcgtccc 14640 tatgccgcag atcctgcacg gcacggggag ggggctgccc ttacggagcc tttggaggtg 14700 caccttgcag taggtgtcca tgcacctctg gccacacgtg tttgcatggc cgacctttag 14760 ccacctgcag taatcttttc cgcacttcat ccttcgaatg ctatgcacmt gtgcatatac 14820 tgcaggacag acgggggtct aattgcaagg ttcccactcg tttctatgaa aggccccagt 14880 cccgctgctg tgatagacag cggattaatg attgctaacc actgctaatt aataattgct 14940 aattattcat ctacgcgaag tggtcccgac gtagattgat aattagcaat tattaatcta 15000 cgcgaaacgc gtttcggtgt ctatgaaagt ccmmagtccc ccccccccc 15049 // ID Kolobok-N17_NV repbase; DNA; NEM; 1213 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP195; Kolobok-N17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1213 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 352-352 (2007). XX DR [1] (Consensus) XX CC Kolobok-N17_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N17_NV transposon CC is characterized by ~40-bp TIRs and TTAA target site CC duplications. This family is composed of ~100 elements that are CC >10% divergent from the consensus sequence. XX SQ Sequence 1213 BP; 394 A; 225 C; 223 G; 355 T; 16 other; ggtggcccgc gtcaattcaa aaggactgct ttcccaaaaa aatcatgcat tttcaaaccg 60 ctcccataca atcattattt acgcgatttc tctaattctt tcaaattctt atgaaagaaa 120 catcctagat tcggagttta ttgcaatgct aggttaaatc caaaccgatt gcggaataat 180 tgaggttaat cgaaggtcga agtttggaaa aaagcgactg tagtacaaaa acaaaatgtg 240 agactcctct aaaatatgct gtaataaata aatcgggttt caaggatcac gcctgtgaaa 300 tataacgata ttccgttggg ccgatcttgc tctaaatcga ctataacaat ttgaacatct 360 cgagatagac gtcttgaaga atgatgaaca tactgccaat caaatcgttc acagaaagaa 420 tactaccatc taaaagtaag aattgatatg tcccttcata aaaaaatgta agtattaaca 480 tttggagacc gtgatttcga gttttgcgct tggagaagta agcagcacat ttcgccataa 540 ttataattca aatgcatcca ttttgatcgc ttttagcttt tggtagactg tgttttgaca 600 cttaccgctt gaatatgatc aaagctagtg tatagaaaag cggttgcacc aggttagagt 660 tgaatatcta tgcgggtaac gatggaatac agcaatattt actgaatccg ttacttttcc 720 aaacacccag aagctgcaga gctgaaattc acaggttgct gactctcgag ggaatgtcgc 780 tgtggcccgt gccacccaaa atcccatagg tagcaatttt caagagcaat aaagttttaa 840 agcattttwa catgtattaa tatttgaatg ctcaaaatat tatgaatgat ttatactacc 900 atagccacaa ccaaaagcat taaaatttac agctgagatt ctgcagctcg ctttagcaag 960 taagagaagt ccctcattat tgttattcta cttcagtcaa tacctgtcaa actwcgrcyt 1020 tygattwacc ccaattattc cgcaaycggt ttggatttca cctagcatyg caakaaactc 1080 cgaatctagg atgttttttt tcataaraaw ttgaaagaat trgrgaaatc aygtaaataa 1140 tgattgtatg ggagcggttt gaaaatgcgt gatttttygk gaaagcagtc ctttggaatt 1200 gacgcgggcc acc 1213 // ID hAT-9_NV repbase; DNA; NEM; 2993 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-9_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; former NVREP416; KW hAT-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2993 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2993 RA Kapitonov V.V. and Jurka J.; RT "hAT-9_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 594-594 (2007). XX DR [2] (Consensus) XX CC A 5'-terminal portion of the transposon is not known. The genome CC contains only a few copies of the transposon. XX SQ Sequence 2993 BP; 904 A; 669 C; 676 G; 742 T; 2 other; catatctcac agaagccgat ggcgatgcac caccaggacc tcggaaggac cttggacccc 60 ttcaagtaaa agacgatgac agagagggaa gactggtaga agaagagctc cataatgata 120 tagcgaatgc attatcatct tacaaaagct gtggtgaatt gactccccaa cagagatacc 180 atcagagata ccgcagacct tcaaatttcc aacccgaaaa atccacggtt ggaacgaggc 240 tttcagaggc gccaccttca aaaataccca tggatggcct acagcccctc cgaagatggt 300 gcatattgta aattctgcgc cgcgatgtcg ataatgagcg gagacagcag aaaggtccac 360 tttatacaag cccccttcac gaagtggcac aagcttggag aaaaagcggg agaacatcaa 420 tcgtccaagt gtcaccaaga gtgcatgatc agcgggcagc gtcttataca ggcaatcgag 480 aatccagcga aatctgtaaa caccctcctt ggtgaagaga agagacgcaa catagagcgc 540 aacaagcaca taatcaaatg tgttgcggaa gcagtgcgct tttgcggccg ccaatgcatt 600 gcctttcttg gtggtggagt caggtgttaa cagcaaagac gagcatgcat gtcagctcaa 660 tagaaatgtg ggcaactttg tggcagccct tcaaatgatt gccaatcacg acgctgtcct 720 agaccagcac cttactgcca ctggaatgag aaataggaac gcaaggtata cctcgccgcg 780 gatacagaat gagatcattg agataattgg caacgatata atacttgatg gtctcttgga 840 caagatcagg gctgcaaagt tcttcagcat aatggctgat gaagtcacaa gcaacaacaa 900 ggaacagcta gctttgtgta tccatttcgt cgacggcagt caagtgcacg aagaatttat 960 cggtttcatc cacctacgga aaataacagg ccaagaaata gccaatgtca tattggaaaa 1020 gctgcagagt ctcggtctgg acccgaaaaa tatccgtggt cagggttatg atggagctgc 1080 taatatgtca agcgacaacg ttggagtcca gcgcaaaatc aaggaagtag cgcccaaagc 1140 agtttatgtg cactgcagtg gacattgcct taacttggtt atcgcccata gttgtcacca 1200 acaaagcatt acgagtgcaa tcgataaact aaagcaatgc agtctgttct tcttwagaag 1260 tccaaaacga gaaggtaaag gagatctaaa aaaccctcaa acctaatttt gataaatgaa 1320 taaatatact ttttggcact tttcaatcca taggtcttct taactctgtt atcgaaaagg 1380 cgatagatga cgcggatcgc cgcaaggctc ttgtggatat gtgtcggaca agattggcgg 1440 cccgccacaa tgcatacaca catttctacc agtcatttac ctttataatc acgtttatgg 1500 agctttaata tcatttatgg agctaatagc gaactggtgg gtgaggagta ccaagatgca 1560 tcatgggaca ggaggagcaa ggacgacgca gcctctttgc tggcaagtct gacctccttc 1620 gacttcattg tctccttcct tgtactctac gagttcctat cacacttagc gggaataact 1680 gtgaagttgc aaggcagagc tgtagacatt gttaaagcct atcaagaggt agtctataac 1740 atttttgttt ctgccaagtg tctgcctcga ttttcatctt ttgtttgtat tttccagatc 1800 ctacaagtga aggagaccta tgaggtgttg tcatcaaaga tggatgagac gttctcccat 1860 atatacaccc acgctgtgcg aatggctgac atcgtaaata ctgctccatc gatgccgcgt 1920 cttgttggga gacaggctca tcacgtcaac gccccggctg ttaatcccga ggagcattat 1980 aggcgtaatg ttagcaatcc ccttcatgaa ccacatcaag tcggaactgg aagagcaatt 2040 ctcaggtaat taaactgttg gcgaagtaat atgaagtaaa aatatgaagt aatcagtgga 2100 tattatttga tagttgatag ctgacgttgt ttgtgtacgt ctgtcagtac ttgtccattg 2160 gctccattgc tttgtcccat ccattctttg tgagaagttt ccagacgaag aggccgaggc 2220 catcctcgat acatacaaag atgatctccc ctctctggaa ctcttgtacc aagaattggt 2280 ccgatttaag ataaggttat tgtaacacaa atagtaaaac ctatagaaac ttcattgaag 2340 attaatttgt ccaatctaat aacaagccaa attaattgca agctacaaaa ctggttgttt 2400 caataaaaat atattatcat tggctttctg ttgtattatt tttctagata cgacgcgaaa 2460 cagtgcaatg acagaccaag taccacagta cttgctctaa agcagtgtga aagggacatg 2520 ttccctaata tgtccacgct gctacagatc tgttgcacta taccagctcc aagctgcgag 2580 tgcaagagaa gcgcgagtgc acttcaacgc ctccacacgt acaacagatt gtgcatgggg 2640 caagagaggc tgacggcatt ggcccttatc cattgtcact acgacacaca cgacgacaca 2700 gacgtcgacc tagatcaaat ggttaatcag tttgcgagac agcaccctat gagaattaac 2760 ttggatcact gcttgaaaat tgatattggt cagaagataa gaattcagaa gcatatacag 2820 taacagtcaa ggatgtgtat agatgtgtta gaaattaaag ggaacagctt tatccttcac 2880 acaatagagt tttatycccc cccccctgtc cgggaaaagg gagggtgggc ttggtaggtc 2940 cgatttcgca ccctccaccc caccccccaa gaaaaatcct gggtacgggc ctg 2993 // ID BEL-7-I_NV repbase; DNA; NEM; 5629 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone BEL-7_NV autonomous DE LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-7-I_NV; KW BEL-7-LTR_NV; BEL-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5629 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5629 RA Kapitonov V.V. and Jurka J.; RT "BEL-7_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 378-378 (2007). XX DR [2] (Consensus) XX CC BEL-7_NV is a family of BEL LTR retrotransposons that have been CC mobile in the starlet sea anemone genome long time ago: LTRs that CC flank the internal portion are >7% divergent from each other. XX SQ Sequence 5629 BP; 1586 A; 1221 C; 1466 G; 1356 T; 0 other; ttttggtcct tcgccgtcgg ataaatcgag gcaagacagg acaagtccaa gagaggtaag 60 acatgcctgt cgaacatttg aaagtcgctc aaattaagaa agagctgaaa tcggactatc 120 aattaaaggt aaccgagcta ctctcgagaa aaggctcgaa gaggcatggg ataaagaata 180 caaaacacaa tagtgttttg acgaaagaaa ccctgtcaaa tccaatgccg agatcccatg 240 aattaattat tcttagaagg aaagaaaaac tgttaaagtt agatgtcaaa gccgttgttg 300 ataacattga acaattgaaa actgcaccga aagtgatctg aaaaaatgaa caatcgcttg 360 gtgaaactaa acaattaccg tgatcagtgc actcagattc gggaatcagt aattgctttc 420 cttcccgatg ataaagttga ttaggaagcc tcaaagtggg ctgtattttt agaggaaata 480 gataaggcta tagacattgc ccaaggacaa tggacaaaca cagacaactc agagttctaa 540 gcatcctgtg tcaaagaata tgtcgtgtaa catgaaactt ccaaagctac agctccctaa 600 gtttatggag atgtgatgaa atttcctatc atcagttcga agcagaagtc cataaccgaa 660 gtgatatccc tgaggttcag aagtttaccc atctaagata agtcctgggt gggtccgttt 720 atcaaactat tgagaggtta gagattacaa gtgctagcta ttccgatgca gtggaaaccc 780 tcaaacagcg gtatggcagg aagcgaataa taaccacctc gctaataaaa tccatctttc 840 agctccaagc aaaaccgaat gcagatgatc atccctgcgc gaacttcatg acaccttgca 900 gaacaaagta agggccttgg agggattagg agaaagtcca aacctgtatg ccagtgtttt 960 gatccctatt ttcgagatga aactaccccc tgaagtttgt gaaaagtggg accgggactg 1020 tccgaaacgg gtaataataa ggttgatata gccatttttt caaatttctg ctctcaaagg 1080 aggccgcaca gagaagtgcc aaaacgggaa ctaagccagg ttcccatagc aacaaacaaa 1140 atcaatcccc tactaacagc agggagggta atgcaaacaa accacaggaa acccaaattt 1200 cagccgcgtc cgcattatta agtatagttg ataggcagca aaacagaaag atctgttcgc 1260 tatgtaaaac cgctggccat aatacctcgg agtgctcgca gctcacagag aaaaccgtag 1320 aggagcggtg gactcagaag aatgcggggc tctgctttaa ctgtcttcgc cccacgaatg 1380 ctaaccatta ttcacaagtt tgtcggcagc ccagatgtgg ggtaagagag tgtgtagagc 1440 gtcatcatcg gctattacat gtccaatcgc cgctcagtac acacactggc ctcgcgtctg 1500 cgcatcaccc gagtacacaa attttgcttc agactgtcat agcaaatatg tctgttgatg 1560 gtcatgtgat cccggttcgt gtgctttttt attcgggcag tcaaagatcg tacatcacag 1620 agaagctagc agattcgcta gagctaaaag gcccaaagga gatcctcaac gtgtcaacat 1680 ttggtggtga taaaacccag actaagaaga tgagagagtc ggaatatccc tcgagccgag 1740 agacggaggt acagagtcgt ccccagtttt catggaagca cttgctgttg agaagctgtc 1800 aaccactaga gccagtcaac atagatttta acgtcaatcc ccacttgaga agccttagac 1860 ttgctgactc gtaccctcga ggcgcagttg atgtagacgt cttgaccggt gcagattact 1920 accaggcgtt tgtgagcggc gagtgcaaga aaggtccccg tcgtgacacc ttgactgcag 1980 tgagttctac cctcggatgg atcgtgtctg ttccagttgc tggctagtca tccacgaacc 2040 caaagtcgat gctgacaagc gtgcaaaacg accccgtagt ggactgtctg ataaagttct 2100 gggagcttga atccatcggt atcagtgtca aagaagatac gtcgccgtcg gttgacgagc 2160 agaatgctgt tcatcaattc gagaaaggtc tgaagttcgg cggtgagagg tatgaagtac 2220 gtttacactg gaggaaggag gaccctgagc ttcgcaacaa ctatgtgcaa gccgttcgac 2280 gacttgcaca tagttgaggg acagttgaat agaaacccca agaaggctga ctcctaccag 2340 aacgcgatga gtaagtatgt ggagagaggc ttcgtagaga aggttgacac agagaaagac 2400 aaggacggag agaatgtgag atttctgcct caccacgcag tcttccgtga ggacaagcgc 2460 gttagtagtc gttgtcgtgt acgttttgac gcctcagcac gtgacggtga gaaagatgtc 2520 tctgtcgggt cctgcgttgc agtcgaattt agtttttgtt tctttcgttt ccgaacgcac 2580 aggatcgcat taatggcggg cttgcagagg tcgatcgcgc ggttcacaga tatgtatgga 2640 gagacagaga agctaagaga cgtcccgatg tttaccagat gacgcgcgta acctttggtg 2700 ttaactgcag cccctttctc gcgatcgcta ctgtgcgcgc tcacgctaag aagcacgagt 2760 tagaatttcc taaagcctca gcggagcttt tgcagaacat gtacgtcgac gattgttaaa 2820 ctggcgcgga gaacgtagag gaagctgagg agctgcaaag atcacttgcc gagcttattt 2880 accgcgcttc gtttaacctc acaaagtggt cgagcaactc cgaagaagta ctcgagggaa 2940 tagacgagaa ggatagagat ccaagcacac tggtagacct cagtgaaagg caacccatga 3000 aagcgttcgg tattcgctgg tacatgacac gtgatttgtt caagttccaa ttgcagccag 3060 atgtgatgta cccctttgct gtgaaaacga agagaagcca gttcagcgtc gcctcaaaga 3120 tcttcgatcc gatgggtttc atcaccccct atactgttcg agcgaagata ttattccagc 3180 agttatggca cgaagggata gattgggacg atctgttgcc tgatgagata ctagataaat 3240 ggcattcttg gaagtcggaa ctaccctgtc ttgacagcgt tcttattccc cgatgtttca 3300 tggacggtgg caaagctagc gcgagaatcg agattcatgg ctttggtgat gcttaaccca 3360 aggcttacgg cgctgccatc tacgctagag tagcatgtga agacgatcaa gtacacaccc 3420 acattctcat gtcgaagagt aaaggagccc ctaccaaagt cgtatcactc ccaagattag 3480 agcttcttgc tgctgttgtg aattgcagac tactgaagtt tgtgatcgat tcactttctg 3540 tattgtatga cattcagcgt gtcgtttgct ggtcagacag tgaagttgct ttgcactgga 3600 tccgaggttc tagtgcgcgg tggaagacgt tcgtggacta tcgggtcgcg gaaatacagt 3660 cttcgtttga tcctgaatgt tggagacatt gtcccggagt agataatcct gcagacctac 3720 tcactcgcgg tatgtcatcg agcagtctcg aggagagcga gttgtggtgg aagggtccga 3780 agtggctgtc agcttcagct gcgtcttggc cgagtcaaac ccgaaatgaa gacgagatca 3840 tagcgacaag agtaaataga aaagagaaac caatcaatgt tttcgatgaa aagtggtcga 3900 cgctcgttca agtcaccgcg tacttcttca gattcatcaa caggttgaaa gctgaacgag 3960 gttctgagct atcagccgag gagatatcga ctgcagaaac cctttggtac cttgaagttc 4020 aaagggaagt ccacgcggaa gagtatacaa cattgttgtc ccaactgccg ctgcccaaga 4080 acagtcgtat cttgaagcta gaccctattc tttgacaaga atgatcgcgt catcagagtc 4140 gggggacgat tgcagaactc agagttacaa aaaaaacgaa gcacccagag ttaattccgc 4200 atagacattc tcttaccgag aaaattgtaa cacatgcaca caagtgatta cttcacgcta 4260 gccctgagac gacattggct gtgttacgtg agaagatttg gttgtcccaa ggaaaacgcg 4320 aagtcaagag agttattgtt agatgcgtta cgtgtcagcg ccaacgtgtc agttcttcat 4380 cgcagaagat gggtcctttg ccgcaagaga gagtgtcgtt ttccccaccg tttaggtatt 4440 gacttcgcgg gaccgtgtat gttcgtggga gttcggcgca gagggctgag aacgcctacg 4500 tttgtatttt cacatgcaca gcttcacgta tggaacattt ggggctcact aacgatatgt 4560 caacagacga atttcttcaa gtgtttagtc gcatagtaag caggagaggt ctttgtgacc 4620 ccgtgtggtc cgacaatgct tattatagtc atttcaagct gcggatcatg agctagagat 4680 tatgtttgat ataggaatta ttgataccga caaggttacg gctcattttg ctagtcgagg 4740 agtcaagtgg aagttcatta ccgagcgctc cccatggcgg ggaggtttct gggagcgtac 4800 cgttgcttaa ggttctcaga agagcgttgt tacagttcac ggcggggagg tttctgggag 4860 agaaccgttg cttattgttc tcagaagagc gttgctacag tttacggcgg ggaggtttct 4920 gggagcgtac cgttgcttaa ggttctcaga agagcgttgc tacagtttaa ggcggggagg 4980 tttctgggag agaaccgttg cttaaggttc tcagaagagc gttgctaaag tttacggagc 5040 tgcagacgtt gctgatccag atcgaggctg ttattgatag tcgaccatta accacggtca 5100 gtgatgatgt gcgcgacctt tctccaatca cccctgcgca cctggcaata cgaagggcat 5160 tcgtcactct accggacgtt acggaaatac ccgttccagg cgacagtcta ataccgagat 5220 atttgtatca acaaaggctc gtaaatcact tctggaatcg ccagcacaag gaatgtctgc 5280 acatactgtc cattcgtcac atatggatga aggaagaggt ccctgttcgc gtaggagatg 5340 ttgtcctgat atcggaggat aatgtgacac gaggccagtg gcctctggga aggatcgaag 5400 ccgtgcaccc tggcaaggac ggacttatca ggactgctat gatgcgtacc gagaagggaa 5460 ctctcaaacg accagtacag agataacata ggttagagct aagggcagct accacagtcc 5520 ctaaaggcgg ggagcagagc agtcagatag ctgagcgtag cgttgtgtta ggcaagagcg 5580 agaagaaaag tcgtcaaaga aggacgtcag ttgacgtcgg cggggagga 5629 // ID Gypsy-28-LTR_NV repbase; DNA; NEM; 162 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-28_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28-I_NV; KW Gypsy-28-LTR_NV; Gypsy-28_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-162 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-162 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-28_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 488-488 (2007). XX DR [2] (Consensus) XX SQ Sequence 162 BP; 48 A; 32 C; 31 G; 51 T; 0 other; tgtaatgttg ttaccgtcac cttggtaacg cgtgatttga gttgatttta tgaccaagca 60 tgtaactagc gagtcagtcg tttgctgacc gttgaccagc aatgtagtaa aagaaccatt 120 cactattcga ctcagtcttt attcaagaca caaaatatta ca 162 // ID TE-8_NV repbase; DNA; NEM; 759 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-8_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; 3' palindrome; NVREP48; KW TE-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-759 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-759 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-759 RA Kapitonov V. and Jurka J.; RT "A family of TE-8_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 85-94% identical to the consensus. It was reported CC originally as the unclassified NVREP48 transposable element CC [1,2]. It contains ~150-bp 3'-terminal palindrome. XX SQ Sequence 759 BP; 234 A; 146 C; 151 G; 228 T; 0 other; taataccatg atcacctcgg attcttttgt tttctgaggg acgattacta gcgaaattcc 60 ctcgaaaaca atagatggtt ctaaatttcc ctcatgcatt aatgatgagg gagatttagt 120 ttctaaattt ccctcatgca ttaataatga gggaaattta gaaaaagaca aaagaatctt 180 ttgtcttcta aatttccctc tacatcagtg catgagagaa atttagaacc aagatgcttg 240 tcttctagtt tccaccaggg aaacaaatag aaggcagctt cctgattagc gcaggaatag 300 accctgcgcc aagagaccag agtatttgat ctcgtgatac ctaaacaacg ttagactaga 360 tccatgtggg atgattttga ttgctgtacg catgcgtgct aatgacgtca aagaactaaa 420 ctgtagatat gtagagcaac tatgtaaatc aactatgttt gatttgagaa ttgttcgtga 480 aaatgtggtg gtctctagag ggataaaaag aacaatgcgt atgcaatgcc ctgatccatt 540 gaaccgtgtt cgctcatcca acctaatatt actcgtagtt gcgagtttat ttcctcggtg 600 atcatggtat tacaaagtta tagcatggca tctcggggaa tttagtgatt aaatgtcccc 660 caacctcggg atgactagtt aaagtcaact aatcatccct cggttgcggg gacatttaat 720 cactaaattc ccctcgtgcc atgctataac ttataataa 759 // ID DIRS-3_NV repbase; DNA; NEM; 3805 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 08-JUN-2010 (Rel. 15.07, Last updated, Version 2) XX DE Starlet sea anemone DIRS-3_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_NV. XX NM DIRS-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3805 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3805 RA Kapitonov V.V. and Jurka J.; RT "DIRS-3_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 436-436 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 682..3291 FT /product="DIRS-3_NV_1p" FT /note="reverse transcriptase, ribonuclease H, and FT tyrosine recombinase." FT /translation="MHCPGEFISPIFIRPKKDGTHRVILNLKTFNENVEYH FT HFKMESIKSVITLIRPNCFMSSVDLKDAYHSVPIAVEHRKYLRFKWKNTLF FT QYTCFPNGLAWCPRKFTKLLKHVYSELRQQGFVNVAYIDDSYLQGATQLEC FT WNNVKETVSLFQRLGFIIHPEKSVFIPTQEIDFLGFTINSVTMTVKITKAK FT ALNLQSECQKMLRKSQHILIRDLAHIIGLMVASTPGVEMGMLFYRSLENEK FT IDHLKLNKGNFDAECQLSDTCKSDLEWWATHILNSEKQISHGNPDMTLRTD FT ASKKGWGAELGNKRTGGRWLFVETSCSINDLETQAIFFALKSLCKDVYNAH FT IRIESDNTTAVCYVNNMGGSKSRSCNAIAREIWLWAIEHKIWLSAAHLPGK FT DNVAADQESRLFNDKTEWQLHHTVFTEINSLWGPMKVDLFASRLNKQLSTY FT VSWRPDPEATFVDAFSISWANRIFYAFPPFCLISRCLQKVAEEEAQGVILV FT PVWPTQTFFPILLNMLIDHPRVLPKRDDLLILPHSMEQHPLKPKLRLMACY FT VSGSAYKQKAFQMKLRRLFLSHGEREQRSNMQHILKKWEHFCSERQIDRTE FT VSVENALAFLTSLYNSGLKYSAINTARSALSCLDCGSRITIGNHPLISRFM FT KGVFECRPTESRYAFVWDVQPVLNFLRQWVANEELSLKELSLKTVMLLALV FT TAQRVQSLHLLDISSMERRADCIVFKLGLLKQSRPTVKSTFIELTKYPSEE FT KLCAVRTLEAYLARTKPLRGSETKLFITHSKPHHAVSADTLRRWIKSCMEQ FT AGIDTVAFGAHSTRAASTSAARKGGVHVTDILAKAGWSSERTFGKHYNMPV FT VSDNDYVKAVLSVSNDS" XX SQ Sequence 3805 BP; 1183 A; 766 C; 812 G; 1044 T; 0 other; tgcaaattac gagctgaact gccgtcgccg tgaatgcata aaacctgacc tcaatgatga 60 ctacacttcg ctgttttcat catctgtccc gatcaataag ttcctttttg ggggagacac 120 atccaaacgc ttggatgata ttgacaagac taacaaggtg gtcaggaagg cgatgggaaa 180 agacagaaac aaaagccgcc ataacaacaa caacgcgcgc tctagtagca gtcgctgtag 240 gacgggccaa cacttctact cgagaagctc gtccagtggg tattccaacc cctcatctaa 300 gcctttttta gccaagcgct ccttccctca agacagtcgg cgaaagaggg gagggatgag 360 caaacagaag cagtgaacaa aactatacct gaggtgagtc gagctccagc catttgtttt 420 gaaaacgata gttttcactt ggtacctgtg gaccaattca aggctgggag actacaggaa 480 ttcttgcccg agtggcaaga aattacctca gatagcgcca ttttggactc tgtgcttcat 540 agtcatatag atttggtttc tgaccttgaa ttgaattgtc aacaaggtac aagggaaatc 600 tatcacacta attcagtaga agcagctatc atagatagtg agcttgcgaa gctcttagag 660 aaaggtatca ttgaagtctg catgcattgc ccaggggaat ttatatcccc tatctttata 720 agaccaaaaa aggatggtac ccacagagtt atactgaatt taaaaacatt caatgagaat 780 gtcgaatatc atcattttaa gatggagagt attaaatcag tgattacact gataaggccc 840 aactgcttta tgtcatctgt tgatctcaag gatgcatacc attcagttcc tattgctgtt 900 gagcatagga aatatctgag atttaaatgg aaaaatactc ttttccagta tacttgtttc 960 cccaatggac ttgcatggtg tcctaggaaa tttactaagc ttctcaagca tgtgtactcg 1020 gaactcaggc aacaaggttt tgtcaatgtt gcatacatag acgactccta cctacaggga 1080 gctactcaac tggagtgttg gaataacgtc aaagagactg tatccctatt tcaaaggttg 1140 gggtttatta tacaccccga gaaatctgtg tttataccaa cacaagagat tgattttctg 1200 ggctttacta tcaattcggt tactatgaca gtaaaaatta cgaaagcaaa agccctcaat 1260 ttacagtcag agtgccagaa aatgctaaga aaatcgcaac atatcctgat tcgtgattta 1320 gctcacataa tcgggctcat ggtggccagc actcctggtg tagaaatggg tatgctcttc 1380 tatagaagcc ttgagaatga gaaaattgac catctaaaac taaacaaagg gaattttgat 1440 gctgagtgcc aactaagtga cacatgcaaa tctgacttag aatggtgggc tacacacatt 1500 cttaattcag aaaagcagat ttcacatgga aatccagaca tgacactcag aactgatgca 1560 tccaaaaaag gatggggtgc tgaactaggc aacaagagaa caggggggcg ctggttattt 1620 gtagaaacca gctgctccat caatgaccta gaaacccaag cgatattttt tgccttaaaa 1680 tctttatgca aagatgttta caatgcccac atcaggattg aaagtgataa cactacagca 1740 gtatgctatg ttaataatat gggtggcagt aaatctagat catgtaacgc cattgctaga 1800 gaaatatggc tttgggcaat tgagcacaaa atctggctga gtgctgcaca tctcccagga 1860 aaagataatg tcgcagcaga tcaggaatcc aggttgttta atgataaaac agaatggcaa 1920 ttgcaccata ctgtttttac agaaattaac agcttatggg ggccaatgaa ggttgacctt 1980 tttgcatcga ggttgaacaa acaattgtca acctatgtct catggagacc agacccagag 2040 gcaacatttg ttgatgcatt ttcaatctct tgggctaaca gaatatttta tgcttttccc 2100 ccattttgtt tgatcagcag atgccttcag aaggtagcag aggaggaagc acaaggagta 2160 atacttgttc cagtttggcc aactcagaca ttcttcccca tacttctgaa catgctgata 2220 gatcacccac gggttttgcc aaagagggac gacctgctga ttctacctca ctccatggaa 2280 cagcatccac tcaaaccaaa gttgcggctg atggcttgtt atgtctctgg gagtgcctac 2340 aaacaaaaag cattccagat gaagctaaga cgattattct taagtcatgg agaacgggaa 2400 caaagaagca atatgcaaca tatcttaaaa aagtgggaac acttttgtag tgagagacag 2460 attgatagaa ctgaggtgtc tgtagaaaat gccttggcat ttcttactag cctttacaat 2520 tcaggactga agtatagcgc tataaataca gcacgcagtg ccctatcatg cttggactgt 2580 ggcagcagaa ttacaattgg taatcaccca ctgatatcaa gatttatgaa aggagtcttt 2640 gaatgtcggc caacagaaag cagatatgca tttgtatggg atgtacaacc agttttgaac 2700 tttctaaggc aatgggtggc aaatgaggag ctctccttga aagaactctc actgaaaact 2760 gtcatgctgc tagcactcgt tacagcacag cgagtgcaat cactccactt acttgacatt 2820 tcatcaatgg aaagaagagc agattgcatt gtattcaagc ttggtttact caaacagtcc 2880 aggcctactg taaaatctac cttcattgaa ctgacaaagt atccaagtga agaaaagcta 2940 tgtgcagtta gaactttgga ggcataccta gcaagaacta aacctctcag ggggagtgaa 3000 acaaagcttt tcataaccca ctccaaacct catcacgctg ttagtgcgga tactctaagg 3060 agatggatta agtcatgtat ggaacaagct gggattgaca cagttgcatt tggtgctcat 3120 agtacccgcg cagcatcaac atctgcagcc aggaaaggag gtgtgcatgt cacagatatc 3180 cttgcaaagg ccggatggtc cagtgagagg acatttggca aacattacaa catgccagtt 3240 gtcagcgaca acgactatgt taaagcagta ctgtctgtat caaatgattc ataactgttt 3300 gagcaataga ctacagtact agagtggaat ttttgtcttc accactttca ttgaaacatg 3360 ttcatttttc acatgtgact tggttatagc gttggctatt atttttagag taaatacatg 3420 cattgttgtt acaacaatat tgtccacatt gtgtgttgga aatttacgca gattgcagtc 3480 atcttggctg caaaatctca cttggtccct caatgtggtg acgtagaaga attcttaaat 3540 taaacgaaac ttacctggaa gttgaagttt gattgggatt cttttagtca ccataacatt 3600 gagggattaa gtgctctccc tgtgttagag ggtccctccc agtattgttt ggcttttcct 3660 caagtttttg aagatgccta caatctgttt atttaaagac tgaagttgcg catgcgcatc 3720 gttgctatct cacttaatcc ctcaatgtta tggtgactag aagaatccca atcaaaatcc 3780 aagtttcgtt taatttaaga attaa 3805 // ID Gypsy-38-I_NV repbase; DNA; NEM; 4385 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-38_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38-I_NV; KW Gypsy-38-LTR_NV; Gypsy-38_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4385 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4385 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-38_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 507-507 (2007). XX DR [2] (Consensus) XX SQ Sequence 4385 BP; 1645 A; 1055 C; 965 G; 720 T; 0 other; tttggcgacg aggaatagga attatcagca aagcagaaga gtagaagaat gacaaatgac 60 acggcagata cgagttcggg cgcaagtagc gcggcgacca acccgaacaa catcaccgta 120 gtaaaccgac aactcagtat caaacccttc cacatcaaca ccgacaccaa tgacacggca 180 atccgatggg ataagtggaa gaaggacatc gaaagacagt ttcgcttctt tggaataaca 240 gaaccagaaa caaagaaaga cggcctgata atctacggcg gcccgcagat cgccgacctt 300 gaagactcac tccctgagct aactgaacaa gccggagaca atgcctacac aagacttata 360 aggaagctgg ataagaactt tctcccaagg aagaacaaag actacgccag attccagttc 420 ggaaacctta tccaagccga caaagagagc atggcgcaat attacacaag gatccgcgaa 480 gtagcgcaga aatgcgaatt cacagatgag aacgaggcga ttcgagatca tttaatcaag 540 actatgagaa gcgctcaact acgactcaag actataagaa agaacttaac tctgacacaa 600 atactagacg aagcagcgat agatgaagaa tcaagcgcgc aagcggcagc catcgaaagg 660 aagcttaagg aggagtcgga atctcaaagg gtgaaacaaa tcacaaagcg acacacgcgc 720 gaccaacacc acaaagaatg cgaccgatgc ggagcgaaac acagcacagg caattgcaga 780 gcctatggag cagaatgcca caaatgcggg aaaagaaatc actacgctcg aatgtgtagg 840 agcggcgcaa aaacaaaaga cgaaacaacc tcagaacggc aagaccaacg cgggaaacat 900 caatcaagga acttcggaag ccgaaacaaa ggaaaaggac gccgacagat tcgacacgtg 960 gagcgagaaa gcgacaccga atcaagcgaa acagagagcg acgaagatat caaccggata 1020 ctcaaacatg tgaatatccg caagacaagc acagttccat cctcgacgaa agcaaacaaa 1080 tgcaggatct ggataaacgg agtcaaaaca accgtcgaac cggacaccgg agccgatgcg 1140 aacgtcatgg acgaacaaca tctaaaaaca cttcaaaacg cccaaccgga agtgcagcta 1200 atgaaaacaa cgctgaaact caaaacgctt acagaggacc ttcccgtaat cggtgaaatc 1260 aacgtgacca tagccaatga gacccgaagt accgtagcaa ggatcgcgat tatcggcgga 1320 accatcgact cgctaccact actaggcaga gagacactcg aagaacttgg gatggtgaaa 1380 ttcgatgcaa ccggacgcct gaagcaaccc aacaaacaca tacacaaggt acagaccgga 1440 aacgagcagc tggatcaaat agtcaacaat cacacacagc tcttttcggg gatcggaaaa 1500 gcacgacgag acgggaaaga tatcgaaatc cacctaccca tgcaagacga cgcacagcct 1560 gtcatccaga aaccgaggcg agttccatac cacctgatag agccactaaa gaaaaggatg 1620 aaagagttcg tcgataacga catcatggag cctgtcccgg aacacgaatc gataacatgg 1680 tgttcaccat tagtggtcca accaaaaccg aagaagccag gagacatcag agtgagcctg 1740 gatctccgag tgctcaacaa atcaatgcag cgcacacgac aagtccaagc accaattacc 1800 gaggacttta tcgcaacatt caaggactgt cgaatgttta gcaaactaga catgaatcac 1860 ggataccacc agtttgcact agacgaggaa tcgcgaaagc tgatgacatt ctccacccca 1920 gaaggcaact atcggtacag acggctagcg ttcggcggcg ttaacagcca agacctattc 1980 gacgcggaaa tgaaccgtat tctttcggga ctccagcgag tgctgaacaa tcgggacgat 2040 attcttatcg gtggactaaa cgaagacgac cacaacaaga acgtcgaggc agtattaaag 2100 cgactggaag cgcacaactt aacactgaga agagagaaat gcgagttcgg caagacaagc 2160 atcgagttcc acggacatct cttcacatca gaggggctta aacccagtcc aaacaaggta 2220 aaagcagtac gagaatgcgc accaccgcag tctaaagagg aacttgtatc atttcttcaa 2280 atgatggcat acctgtctcg ctacatcacc aacttctcaa gtcgatgcga acctctgagg 2340 agactgacac acaaagacgc aaggttcgaa tggaacgacg agcagcaaaa ggcgtttgaa 2400 gacctgaaga gagcgataac tacggcacca gtcctgattc cctacaaacc tgaacggcaa 2460 acgctgatta tctgcgacgg cagcccaact ggactaggag gcggtttatt tcagaagact 2520 gacgaaggat accaacctgt acacttcgtg agcagaacgc tgacagacac agagaaacgc 2580 tattcacaaa tcgagagaga ggcacttgca gcagaattta ctaccacaag acttaacatg 2640 tacctcctag gatcaccaca cttccaactg gcgacagatc acaagccatt actaccgctg 2700 ttgaacaatc caagagcgaa gttaccgcca cgtatagaga ggatcgtgat gaaaatgcaa 2760 aacctcgatt tcacagcaat tcacatcgca gggaaatcca atatgacgga ttatctatca 2820 agacatgcga ttccagacga aaagcaatcg gacagcgagc actacatcaa agcaataata 2880 gagaccaacc acgcagttgt catggaaacc atacagacag caacaagaaa agaccgagta 2940 ttgcagaagt tacagacagc acttcacacg ggacaatggg acaaaaacga ccctgaccta 3000 gcaccgtact atgatctacg agcagagatc tacacaagcg acgacgtagt gttaagactg 3060 gacaagataa ttccacctga atccctgagg gacaagataa tcacaatctc ccacaagcaa 3120 ggacacttag gcatcacaaa gacaaaggag ctactaaggc ggaaatactg gttcccaaga 3180 atgaacaagc ggattgagga catcgttagc acatgcttca gctgccaggt atcaacaaac 3240 acacatcaca ccgagccagc taaaatgaca agcttaccag aaagaccatg ggaaacggtg 3300 gaggcagact tttgtggacc atttccaaac aacgaatatg tactagtggt cacagaccag 3360 tattcaagat acccggaagt agagtttatc acatcaacag cacttaaacc aacccggaag 3420 aaacttaaga agatgtttgc tacacacggt gtaccaaaag tcgtacaaac cgacaacgga 3480 ccaccgttca attccacaga attcacagag tttgcagctg aagaaggatt cagacataag 3540 aaaatcacac caagacaccc gaaagctcaa ggccaagttg aaggctttaa caagcttata 3600 aacaagatag cgactattgc taaccaagaa cacatagatg tacacgaagc gacatacgac 3660 atgctatcag cctacagaga cacaccacac ccagctacaa agaagacacc ctatgaattg 3720 atgatgaaca gagaagtaag aacgaaattg gaacactttc caacagacaa accgacacag 3780 gatagtgaaa tacgacgcaa cgacagcaag tacaaagaac aaacaaaaat gtaccacgac 3840 aaaagacaca gagcaacaaa acacaagctc gcagtaggac aagccattct gatcaagcgg 3900 gacaagaaaa caaaagccca aacaccatat gaaccgcaca tctatatcat cactgaaatc 3960 aaaggatcaa cagtcaaggc aagaagaatc ggagatggaa agattatgtg tcgagatgca 4020 tcaagagtta aacaactgaa gtctgcgaca cagaacatac aggaagaaag agaggaagaa 4080 ggtagagata tcaaaaagat accaccatgc ttcaaggagc aaatacacca gccaatacac 4140 cagccagaag tgactacaca gccaagacga tcaggacgga aacacatttc tatatttgac 4200 cggagactgc gagattattc gaagtaatac cattatgaac taaatggaaa gaacagtgaa 4260 cactcaaaaa gagacacatt attgttacag ttatgtattg atttaaaata tttccagatt 4320 atgattgtac atagaaatga ttctctataa ttatatatac atataagtat ctgaaaaggg 4380 aggaa 4385 // ID DIRS-24_NV repbase; DNA; NEM; 3777 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-24_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3777 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3777 RA Kapitonov V.V. and Jurka J.; RT "DIRS-24_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 419-419 (2007). XX DR [2] (Consensus) XX SQ Sequence 3777 BP; 733 A; 1019 C; 1007 G; 1018 T; 0 other; gcacggtact tgcttcttgt cattcttcgc ccagaatact actcgcaggg ttgttgctgc 60 gcgtgtggga tggtaaggtt cgcccttctc ccaggacgat tcgcgcaggg ttgttacagc 120 gcatgtgacc tggttcggtc cggtttttct ccttggatac tactcgaagg gtttgttact 180 gcgcatgcgg gatggtaagg ttcccccttc tcccaggatg cttcgcgccg ggtggtttcg 240 gtgcatacgc gatgaaaggt cgctcgtgcg ggttgtttcg cgtagggtgt tgctgcgcac 300 gtgagatagt tcgtcatcct tctcccagga tgcttcgcgc tgggtgttac tttgcatgcg 360 cgatagcaag gtttgcgttt atcacaggtc gcttattcga acagggtgtt caagaagagt 420 gtttacagca tggcacatgc aggttggtac gaccagatct gctctgaggg gggtttgatc 480 tacgcccgcg tggtgcaagg ttcaccacca ttcatcgagc gattcgacac cgctcacggg 540 agtccacact tcacccaggt ttaccaactc ctagggtact tctatcttca aggatcctct 600 gagctcgcgg caggggccag cttgccccct cccctcctct gttttcagcc tgcctgctct 660 agtggctttg ggagttgatg agtgactttt tgttgcagca ttgctcgcat cagtcccatc 720 ggtgacgcct ctaaagcccg acaggttcgc tgcacagttg attaaacacc ccgatcaaca 780 cctggtggca tatgtactgg atggtatacg ccatgggttt agagtaggat ttgacgggtc 840 ttcagcactc cagtcgagca aaaagaataa gcaatctgca caggagcacc cttcggtggt 900 cgacgattat ctggcgaatg aggtatcgct aggtagagtg gctgggccgt ttgcataccc 960 tccattcccc aacctacaca tcagcaaatt tggggtgatc cctaagagcg ggcagcccgg 1020 gaaatggcgt ttgattgtcg acctatcatc gcctgagggc gctagtgtga atgacgggat 1080 tgatcccgaa cagtttacct tgaactacat acgagtcgac aaattcggcc cgggggcttt 1140 aatcgcaaaa ttcgacgtca tgtcggcgta ccggaacgtc ccagtccacc cctccgatcg 1200 ttatcttttg ggtatgagat ggcgcgcaca ttattatgtt gatcttgcat tgccgttcgg 1260 cctccgctcc gccccataca tcttcaatac agtggcctct atggtggagt ggattctggt 1320 aaacaatcac caagtgtcgg acattatgca ctaccttgac gattttattt tggcgggccc 1380 acccgactct ccgaggtgtg cgcgagatct gtcagtggcg ctacaggtct gcaccaatct 1440 tggccttcct ttgcatccgg gcaagtgtga tggcccctcc tcgacactta ccgttctagg 1500 tatagaacta gattcagtca accgcgtagc ccggttacca gcagacaagt tggcgaatct 1560 acgcgcactt atcaataagt ggtctcgcct agattggtgc accaggcacg atttagaatc 1620 tttaatcggc caccttcatc acgctgctaa agtagtgtgg cctggccggg cgttcatccg 1680 gcgcttgatc gatcaactcc gatgcttcag acatgacaga cacccaattc gcattaacaa 1740 tgaaactcgt cgcgacttgg cgtggtggca acagttcttg gaatcttgga acggtgtcag 1800 cttctggctt tatcctggtt tagaagcgac tcctacggtt atcgtcacct ctgacgcagc 1860 aggcgccttt ggctatggag cttattgtgg gtcggagtgg tttaatgggc tctggttcgc 1920 ctctcagacc tcgcagtcaa tagcttacaa ggagctcttc cctattatta tcgcagcgca 1980 tgtatgggga cacggatggg gtaggggaca tgtccttttc aggtccgaca atgaagccgt 2040 ggttcacatc gttaactcta ggacctcgaa ggttccgtgc atcatgaaat tgctgcgtag 2100 gctactcatg tgggctgcga gatgtggttt ttctttcgct gcagcccatg ttccagggat 2160 tgaaaattcc ctagctgacg ctctgtcccg tttcaattgg caggaatttc tgcgcttggc 2220 gccttgggct cgtccttccc ctactcccat cccggcgtgg cttctggcag atatctctca 2280 cccttagaaa caaggtgctg gcggttcatc tccgagggac ttgccccgtc cactcgtaag 2340 tcgtatgcta caggtcagcg gaagtttgtc aacttttgcg cgcaattggg aaagctcaac 2400 cccttgaccg ggtctccatg cccggcagat gagtggacgc tttgcttgtt tgcgtccttt 2460 cttgcggatt ttgttcagcc gtcgtcaatc aaggtttact tgtctggagt tcgtgctatg 2520 cacattgaac aggggttcca ggaccctctt gcgggctgtt tacgactcga gagagtattg 2580 aggggcatca aaagggttcg cggtgtgaat ccctcgtccc ggttaccgat taccgatgag 2640 gtaatgtata ctatccaccg ccacctggac ctcgggcttc cagaccacct aatgttttgg 2700 gctgcctgct gcctcgccta ctttggcttt ctgagagcat ctgagtttac ggtagactcg 2760 ttgaacagct tctcgtcaca gcgacacctg cagcctcagg acattacctt agattccatg 2820 tcggctccca agtacatacg tgtcaacatc aaggcctcta agactgaccc ctttcgcaaa 2880 ggaaccttca tctatattgg taaagccaga cctcccctgt gtgcggttga ggccatccta 2940 gcttacttgc acttgagagg aggtacaccg ggccctctct ttttgttgca gtcgggtcag 3000 cccttgtctc ggcctatcct gacgtcttgg ttgcgacaga ttatgcgagc agcaggtttc 3060 gccggtgatt actccagcca cagcttccgt attggtgccg ccaccgtggc ggctaggaat 3120 gggctctcag atcatctgat ccaatctctt ggccgttggt ctagtgacgc gtataagggc 3180 tacatccgta cccccgtaga gtcgttagca gccgcttctg ctagtttggt ttaataaaag 3240 atacctcctg ttcattctgt ggttggtgct tggttttgtt ggggtcagga ggtcccatgg 3300 tagccgagcc acagtccctc cttttcaagc acctggttgg cggggagctg tggcccggtt 3360 gccatggttc cctgggtagc gcttggtcgg gcgaccagta cgcgctccga tacctaaccc 3420 caacttatct gacgatgagt ttaattgtgt ctgaatgaaa tttagacgaa gttaaaccga 3480 gtcacggtcg cgcgccttgg ggccgaatgc cggcccctgg tcaggagaac gaccaccccg 3540 cgcctttctt gcactggcag cgtttcgagt gaagctaacc tatatgatcc acgcttttta 3600 gtccccaccc accctcccaa agcttatggt aagtatattc cactgagatc agtgtgacgg 3660 gtatcccttg tggcggggag ctgtggcccg gttgccatgg ttccctgggt agcgcttggt 3720 cgggcgacca gtacgcgctc cgatacctaa ccccaactta tctgacgatg agtttaa 3777 // ID Gypsy-49-I_NV repbase; DNA; NEM; 4000 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-49_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49-I_NV; KW Gypsy-49-LTR_NV; Gypsy-49_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4000 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4000 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-49_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 531-531 (2007). XX DR [2] (Consensus) XX SQ Sequence 4000 BP; 1431 A; 869 C; 1029 G; 671 T; 0 other; gtggcgacga gaggaaaaac aacggagaaa accgcgtgtg aagaccgaaa tcagcaagag 60 tcgtggaaga aacctagaga gaagaaaata gagctccagc gggagaattt agtcgaaatg 120 ggagagaacg agcaacctca cgaaatcagg gttttgacga gtggtaagtc tatcagaatc 180 caacccttca tcatcccgac gaatcagttg gagattggaa gagcctggaa ggaatggctt 240 gaagattttg aagaggaggt cgagtatttt gaaatcaaaa catccgaaga taaagtgaga 300 gcgatgaaga tttatggagg gcctgagatc aagaaactag caagaaacat accagagccg 360 acgccaagcg cggatgacaa cgacttcacg agaatgaaga ggaaacttaa cagccatttc 420 ctgccgaaga agaacaaaca cctagcaaga tacacgttca acaaacaaaa gatggaaacg 480 aacgagagta ttgtcacata tgcagccaga atgagatacc aagccaaaga gtgcgagttc 540 ggtactcaag aagatgagag gattctagag cacctcatcc agacgatctc agatggagat 600 ttagtcaaga gagccataga gaagagatgg aatttgaccg aattcataga aaatgctggc 660 cagaaggagg agattaataa gcaggtgaat tacatgaaag aagatttcaa agtggccaga 720 atccaaacac aaaagaagcc ccaagccaag aaacccccat cacaacaaag aagtggagag 780 gcgagaaaga aggacaggca caagtgtgac tattgtggga agactggtgc aaagactcgc 840 tttgtgatga taaggggaag aatggattcg ccgccactca tgaagacatt gaacgagctt 900 ggaatgctga agatcgatcc agaagggtgt atcagagaac ccaatgatct aagaatcaaa 960 acggtaaagc aaacaacgaa gagtgaagaa attgccaagc aattcgagaa ggtctttgac 1020 ggcattggct gcttccagga caagacaggc gagccgattg agttaaagct ggagatggac 1080 ccagaagcaa ctccagtggc acagcgacca aggaatgttg cctactacct gcaacaaccc 1140 ctcaagaaat ggctcgatca gggagttgaa caaggcatat ttgaaccggt tccagaggga 1200 gaccccatca cctggtgttc gccattagtc gttcagccca aaccgaagta cacaaagaca 1260 gacaaggaga agctagaacc acagatgatc agagcaagca tagacatgag ggtaccaaac 1320 ttatcaatga agagaagccg ctgcattcaa gccccgataa gggaagattt cacccataag 1380 ctccgtgact gcaagatatt ctccaggcta gatctacggc aaggatacca ccagctgact 1440 ctggaagaag agaccaggaa ggtagcgaca ttcagcacgc catggggaaa cttcagaccc 1500 cgaagacttg tctttggcgc caagtcctca caagatgtat ttgacgaagc aatgttcaag 1560 gtattcggag acatccccaa ctgcatcaat cagcgagcga tatcccgatc ggaggaagag 1620 atgaagcaga acacgcttag acgctgagaa cagtcctcca gagagtaaag gatcacggga 1680 taacattcaa cggggagaag tgcgaatttg agaagcaaga gattgagttc tttggacatg 1740 ttttcactaa caaagggctc agatcagcgc cggactaggt gagagcagta aaggagagcg 1800 agagacctga ggacaaggag gcggtgagca gctttctcgg aatggcgggg tatcttgaca 1860 acttcatcag cgcctacgac catagccgca ccattattcg agctaacgag aaaagaaaca 1920 aagttccact ggggagaacg agaagagaaa gcgtttcagg agatcaagga gagcatctca 1980 agcaagacaa caatggcata cttcaaccac agacgccaca tcatactccg cacggaggca 2040 agctaccacc aaggactttc cgctgcgctg tatcagcaga cagacaaagg aatgcaacct 2100 gtacacttca tcaccgcacg atgactgaca ccgagaagag atacagccag acagagaagg 2160 atgcactagc gatcaagtgg gccaaagaga ggctgaggat ctatctgcta ggtgcaccaa 2220 gattcagaat cgtgaccgca cacaaacccc tactactcat gttcaacaag gcgactgcga 2280 agatgccccc acgaatagag aaatgggtaa tggaaatgca agacgtcgac ttcgagctga 2340 tctacgaacc agggaaggac gagcaagatc cactagatta cctttccagg caccccctcc 2400 cggagactgg ggacgacagc acagagaaga tcatcaagtg gaccgtcgat gctgaccacg 2460 cagttgtgct taagagaatc agggaagaga cactgaaaga caagacgccg cagaagtagg 2520 cagagagaat agcaagatgt gactaggaga agttcagaag agataaggac atacagccat 2580 actaccaagt gaggcaagaa ctcttagttg ctgaaggact gatcttccgg gaagaaagaa 2640 tcgtgcttcc tgaagtactg cagagaaaga tcgtcaagat cggacacaaa ctgggacact 2700 taggcaagac aaagaccaag caaatgctca gagagaagta ttgtttccca aacatgaaca 2760 gcatgataga tacagcagtc catcagtgct tcaattgcca agtagcaacc aaaagccaca 2820 aggaagaacc tatcaagcaa acccaaatcc ctagcaaacc ttgggagacc atctcaacag 2880 atttcggtgg accgtaccca gacggacact acaacctcgt ggttattgat aagaggagca 2940 gatatccagt tgtggaaaga gtggcaagca caagcctggg accagtcaag gaaaggatga 3000 agaacatctt tgcaacatat ggcacaccca agagggtaga gagtgacaat ggaccaccat 3060 tcaattccgg ggactatgaa gagttcgcaa aggaagaagg attcgatccc cacaggataa 3120 cgccagggca tcccagagca aatggagaaa gcgagaagtt catgcaaata ctaaacaaga 3180 ctgaacgcat agcaaccctt gaagggaagg acaagtacga acggcaagaa gccatccaca 3240 acatgctagt agcatacaga tcgacacccc accctgcgac aggagtaaca ccttatgaag 3300 ccatgcgagg agtgagtgtt agaaccaagc tagactacac accaccaacc acagagagaa 3360 cagccaagga ggaagcgata gatgccagag atgaagaata caagaagaaa atgaaggcaa 3420 atcgagagaa caagaataca aaggagacag ctcatcctag gagattacgt attggtgaga 3480 cagcagaaga gcaaatggag cacgccatac gaaccagcct tctacactgt cacaagcatt 3540 gagggatcaa aggtgacagc acgcagtgct acagatagca ggacggtatg cagagacgca 3600 agccagttca agctcgctaa ctgtattatc aacacagcgg agaaaccaga gagaaatcgt 3660 gtgagagaaa tccatccatg ctcaagccag agggcagtga tcaacctact caaagtgcaa 3720 gcgaagcgac agcacagaca agacggagga agaaagcaaa gaaacagcta acgctaaacc 3780 acagcctaga gaggaccagg agacaccaga gctgagggag cgacccaaga gggagaggcg 3840 caagccgagt tacctcaagg actatgttac cagttagaaa acaagatact tttcttaaga 3900 ctttacttac ttcatgagaa ctttattgat tactttatta agttgatcgt tagaaatgtt 3960 aagattgtat agagctattc tttttaaagt aagggagaaa 4000 // ID Harbinger-N7_NV repbase; DNA; NEM; 766 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP49; Harbinger-N7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-766 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 166-166 (2007). XX DR [1] (Consensus) XX CC Harbinger-N7_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N7_NV CC transposon is characterized by 33-bp TIRs and 3-bp target site CC duplications. XX SQ Sequence 766 BP; 250 A; 187 C; 123 G; 205 T; 1 other; gggagcggtc attaattact gggggggggg ggcggcaatt ttgcaaaacc ctgggctcaa 60 aaattttgcc cccccctcaa atccaagccc aaaaaatcgt gaccccccct agaccggacg 120 cccaaaaatt tgcaaccccc ccaccaccac caccacctcc acatttttat attcaataat 180 tatatctctt taaaaccaca gagacttgat atacatactg agtgtagctg aatataacct 240 ttactaaaat atagatcagc tagcatggca attttgtcct atttaattta agtatgaayc 300 ttcactttcg ctatgtttaa gagtggcaca gagataaaca acaaatactg gtgtcgctag 360 aaaacgacta cgtcgtcgac aattttaaca aagacatttg agtctaggtt ttgcaacatt 420 ttaaagtatt cgttttgttc aactgatttg aacgggcagc tttgtctgtc aaccatgaga 480 gggtttctca aaatttattt atataaagac aagattggta cctgaacaat atggaactag 540 atatacaata gtaggaaaca ttgtgaactg aataaaattt tcatttcaac aatgactctc 600 ttgctcagta ttatattaaa accagactta aattcgacgc ccaaaaaatg tgacccccct 660 ttaatgacag cccaaaaaaa tgtgaccccc cctaaatccg cgcccaaaaa aacgtagccc 720 cccctacata tttgccgccc ccccccagta attaatgacc gctccc 766 // ID BEL-8_NV-I repbase; DNA; NEM; 6142 BP. XX AC scaffold_90; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: internal DE portion. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-8_NV_; KW BEL-8_NV-LTR; BEL-8_NV-I. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6142 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-3805 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_90; Positions 684183 690324. XX CC 'ATACC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 59..3382 FT /product="BEL-8_NV-I_1p" FT /translation="MSERGDPQRHGAETGRITRRTTKMTQKALQNAIERKS FT IEIDRSKRRLLSVIETSKSLSHDSNLDIVLHDLTTEGQQYGIILQQLLELH FT GQNTNGERGHEVQLTEENEILKLAFKEIERLKYMISVKQSGKEMDAKSERS FT YRSSRSSSSRASSARIKALAEARAAREEADYARVLAEKQKELAILTADKNA FT AVAKAKLDAIEQAINEEEFGEGPAEKEDAENFTGQWVHSSPALESDTPNVR FT NALGPKNTSEPHTLSLSHLPRSDNVPKESTPALPYREHVQPQDRMFTNHGH FT DKDVNYHPVISAPDNPYRDITQSQLMDSLTTVNNQIVTSLARQRLPISEPD FT IFDGDATLFQPWKRAFKAMLSDAIVSPTQEINYLRKFTSGPPQALVDNYRK FT RLRDPATLLEQLWVKLEKRFGSPAMISNSLLERLKNAARFSENQPEKLQQF FT ADLCADVESQVAQLPGLACLNFENAMQPVIDKLPKSICAKWEKEIANFSDA FT NGGVYPPFERFAKIIQGQTDIKNNANVLASKATTTEVTPSSAHAPGPRREQ FT RTFKTNAQPQRKGREGPENKKVNRCPYHERDGHTLAECKTFAAKTVSERKK FT WLTDATLCYRCLDPSHFARDYRAPIQCATCGDLRHNTVLHRDPPAPKDNPD FT PEKPVTAKCTALCDPVGGTSCSKMVLVDVYSIHKSSTAQRIYAIIDEQSNT FT SKLADDLGADGPREVYYLSTCSNEREEKSGRRVTGIEARSVSGAAFSLPTL FT VECDVIPGDKREIPTPEMARSFKHLKPIADQIPPLDDTAEVHLLIGRDAPE FT LLKVREFKNGPRGAPWAQRLALGWTISGQMCLDFANGPAHILSRHTHVSNR FT ERQETGDENYEIVPCPNMLKVDIPIDSDNVFKTTRDDNEPSLSREDRQFLE FT IIEKGTRKNSSGNWQMPLPFRVPNQTMPNNRAQAMHRLKGLFKTFERKPEM FT KREYLEFMGKILERGHASPVPRDEPPPKPGHSWYLVHFATYHNTKHTISVV FT FDSSCEFQEISLNKVLLPGPDLMNNLIGVLMRFRKENTGVMCDVEQMFHSF FT HVEPSHRDFLRFLWFEENNPEKPVTEYRMNVHLFENGPSPAIATYGLRRTA FT " FT CDS 3939..5015 FT /product="BEL-8_NV-I_2p" FT /translation="MCRYPAVTTKKMFGTVSTAELHAFSDASQDAIGTAVY FT LRLVNEAKKVSVSLVYGQARVAPANSTSIPRLELCGAVLAVQAVQKVMGEI FT DIEISQVKYYTDSKVVLGYITNESRRFYVYVANRVQQIRSLSNPEQWRYVE FT TELNPADLATRGVPPNKLGETSWLSGPTFLKNIDTADTPSEAYLLDASDPE FT VRKEVVCAKVSTDEDTKKPGLGAHRFLRFSTLKSLQRGIATLNVKVKNFKN FT KRDTRTTRANTLSHRPRVQGEQQKRRAPTVEELDQALRVTTQREAFSAELK FT GANTDPENPRETKKNAKKALRGSPLYRLDPFLDSDGILRVGGRLRRAEMNY FT EQKHPVLLPRKPMFHS" XX SQ Sequence 6142 BP; 1862 A; 1689 C; 1504 G; 1087 T; 0 other; gtgataagtc tggtagaaaa caacgttgga aggtaggccc tttcaagttt ataccgagat 60 gagcgagaga ggagatcccc aacggcacgg cgctgagaca ggccgaatta cacgccgaac 120 cacaaaaatg acgcaaaaag cccttcaaaa cgcgatcgaa cgtaaaagta tagagattga 180 caggtctaaa agaaggctcc ttagcgttat cgaaacatct aaaagtctaa gccatgatag 240 taacttagat atagttttgc acgacctcac aactgagggg caacaatacg ggattatttt 300 gcaacagcta ctggagctgc acggacaaaa tactaacggt gaacgcggac acgaggtcca 360 actcaccgag gaaaacgaaa tcctaaaact agccttcaaa gaaatagaga gacttaagta 420 tatgataagt gttaagcaaa gcggtaaaga gatggatgcg aaatctgagc gttcgtatcg 480 atcctcgaga tcgtccagtt ctagagcaag tagcgcccgc ataaaagctt tagcagaggc 540 gagggccgcg cgcgaggaag ccgactatgc acgcgttttg gccgaaaaac aaaaggaact 600 cgctattcta actgcagaca aaaacgcggc agtagccaaa gcaaaactcg atgcgataga 660 acaagcgata aacgaggagg aatttgggga aggacccgca gaaaaagagg acgcagagaa 720 cttcacggga cagtgggtcc attcctcccc cgcactcgaa agcgatacgc caaatgtacg 780 caacgccctt gggcccaaaa acacgtccga accacacacc ctgtcgttat cccacctccc 840 acggtcagat aacgtaccaa aagaatcaac ccccgctttg ccctatcgag aacacgtaca 900 accccaagac cggatgttta ccaatcacgg ccatgacaaa gacgtcaatt accatccagt 960 catatcagca cctgataatc cgtacagaga catcacgcaa agccaactaa tggattcgct 1020 aacgacggtc aataaccaaa tagtaacgag cttagcccgt caacgtttac caatttctga 1080 gccagatata tttgacggtg acgccacgct attccagccc tggaaaagag ccttcaaagc 1140 tatgctttct gatgcgatag tttcaccgac ccaagagatc aactatctaa gaaaattcac 1200 cagcggcccc ccgcaagccc tggtcgacaa ttacagaaag agattgcgtg atcccgcaac 1260 gctacttgag caactctggg tcaaattaga gaagcgtttc ggcagtccag cgatgataag 1320 caactcgctc ctagaacgac tgaaaaacgc cgcccgcttt agtgaaaacc agccagaaaa 1380 attgcaacag tttgccgatc tctgcgctga cgtcgagagc caagtcgcac aactaccagg 1440 ccttgcctgc cttaattttg aaaacgcgat gcagccggta attgataagc taccaaaatc 1500 tatctgcgca aaatgggaga aagagatagc gaatttctct gacgctaacg gcggcgttta 1560 ccctccattt gagcgtttcg cgaaaataat ccaagggcag actgacatta aaaacaacgc 1620 caatgtttta gccagcaagg ccactactac cgaagttaca ccctcctctg cgcacgcccc 1680 cggacctcgc agagagcaga gaacgttcaa aactaacgcg cagccccaaa gaaaagggag 1740 ggaaggaccc gaaaataaaa aagtaaaccg atgtccctat catgagagag acgggcacac 1800 cctagccgaa tgcaaaacgt tcgcagctaa aaccgtcagt gagcgcaaaa agtggctaac 1860 tgacgctacc ctatgctatc gctgcctcga tccgtcacac tttgctcgcg actaccgcgc 1920 tcctatacag tgcgcaacct gcggcgactt acgtcacaac acagtgctgc atagagaccc 1980 acccgctccc aaggacaacc ctgaccccga gaagccggtc accgccaaat gcactgcact 2040 ctgcgacccc gtcggaggga catcctgtag caaaatggtc ctagtagacg tctatagcat 2100 acacaaatca tctaccgctc agcgcattta cgccattatc gacgaacaga gtaacaccag 2160 caagctcgcc gacgaccttg gcgccgatgg ccctagagaa gtctactacc tgtcgacatg 2220 cagcaacgag agagaggaaa agagtggtag acgagtgaca ggcatcgagg cacgatcagt 2280 cagcggagct gcattttcgc tgcctacact cgttgagtgc gacgtcatcc caggggacaa 2340 gcgcgagatc cccacacctg agatggcgag gagcttcaag caccttaaac caatcgccga 2400 ccagataccc cccctagacg atacggcaga ggttcacctc ttgataggtc gcgacgcgcc 2460 agaactactg aaagtgagag agttcaaaaa cggccccaga ggagccccgt gggcacagcg 2520 actagccctt ggatggacca tcagcggcca gatgtgcctc gacttcgcga acggtcccgc 2580 acacattctg agccgccaca cccatgtgtc caaccgtgag cgacaggaga ccggggacga 2640 gaactacgag atagtgccgt gccccaacat gctcaaagtc gatatcccaa ttgacagcga 2700 taacgtcttc aagacaacgc gagacgacaa cgaaccaagt ctatctcgag aagaccgaca 2760 gttcctagag atcatagaga aaggtacacg caaaaattca agcggtaatt ggcagatgcc 2820 cctacccttc cgcgtcccaa accagaccat gccgaacaac cgtgcacaag cgatgcaccg 2880 attaaaagga ctcttcaaga cattcgagag aaaaccagaa atgaaacgag agtaccttga 2940 gttcatggga aaaatcctcg aaagaggaca cgcctccccc gtcccccgcg acgagccccc 3000 gccaaaacca ggccattcct ggtacctagt gcacttcgca acctatcata acactaaaca 3060 caccataagt gtagtttttg atagcagttg cgaatttcaa gaaatctcac tgaataaagt 3120 acttctacct ggtcccgact taatgaataa cctcataggc gtattgatgc gttttcgaaa 3180 agaaaacacc ggtgtcatgt gcgacgtaga acaaatgttt cactcctttc atgtcgaacc 3240 ctctcacaga gatttcctcc gcttcctgtg gtttgaagag aacaacccag agaaaccagt 3300 cacagagtac cgcatgaacg ttcatctctt cgaaaacggc cccagcccag cgatagccac 3360 atacggcctc cgtagaactg cgtaggatgg cgaggaggag tatggcgagg agtcaaataa 3420 ttttatccgc cgcaacttct acgtcgatga cggactggct tcgcttccaa cagcccaaca 3480 agcgatagat ctggttaaaa aagcacaagc caccttagct acggccaacc tcagactcca 3540 caaggtcgta tccaactcgg tagaagtcat ggaagcattc cccgctgatg acagagcaaa 3600 ggacgtgcgt gaccttgacc tgcgccaaga cgtccttccc gcccaaagat cccttggagt 3660 atactgggac ctagagacgg acgcgttcac atttaaggtg acagttcaag aaaagccttt 3720 cacgagaaga ggggtcttgt ctatcgtaaa ctccgtatac gaccctctag gtctagcggt 3780 acccgtgatg ctcgagggca ggaaaatgct gcaaaagcta gtgcttatgg gtaaaagaaa 3840 aagcagagac gactccccac tggcatgtga tgacccgctc cccaccgcga tgaaagaccg 3900 atgggcaaga tggaaagact cgctcccaga cctccaaaat gtgtcggtac cccgctgtca 3960 cgaccaaaaa aatgtttggc actgtctcca cggcagaact acatgcgttc tcagatgcga 4020 gtcaagacgc gatcgggacc gccgtttacc tccgactcgt gaacgaagca aaaaaggtat 4080 ccgtctccct agtgtatggc caagcaagag tcgcaccagc aaactcaacc agcataccac 4140 gcctagagct atgtggagca gtcctagcag tacaagccgt acaaaaggta atgggagaga 4200 tcgacatcga gatatcccaa gtcaagtact acaccgactc gaaggtggta ctcggttaca 4260 taacgaatga aagccggcgc ttttatgtct atgtagccaa cagagttcaa cagataagaa 4320 gcttgtctaa cccagagcag tggaggtacg tggagaccga gctcaacccc gccgacctag 4380 cgacgcgagg agtaccccct aacaaactag gagaaaccag ctggcttagt ggtcccacat 4440 tcctcaaaaa tatagatacc gctgacaccc cgagtgaagc atacttactc gacgcaagcg 4500 accccgaggt gcgcaaagaa gtggtttgcg ccaaagttag cacagatgaa gacacaaaga 4560 agccgggcct tggcgcacac cgattcttgc gattctcgac cctgaagtcc ctacagcgcg 4620 ggatcgccac cctaaacgtg aaggttaaga acttcaagaa caaaagggac accagaacca 4680 ctagagccaa cacgttgagc catcgtccca gggtacaagg cgagcaacag aagcgcagag 4740 cccctacagt agaggaatta gatcaggcct tgcgagtcac aacacagaga gaagcattca 4800 gcgctgaact gaaaggcgca aatacagacc ccgaaaaccc aagagaaaca aagaaaaacg 4860 cgaagaaagc cctcagagga tcaccgctat accgcctcga cccattcctt gacagtgacg 4920 gaattctgcg cgtcggcggc cggcttagaa gagctgagat gaactacgaa cagaaacacc 4980 ccgtccttct acccagaaag cccatgtttc acagctagtc gccctccacc atcacgtcaa 5040 agtgcaccac caaggccgac taatcacaag cggcgccaca cgccaagccg ggttctggct 5100 gattggaggc cacaccaccg tcacaaaagc catcaaagac tgcgtgacct gcaagaagct 5160 gaggggacgc ccactagagc aacgaatggc agacctgcct cccggcagga atgaagtctg 5220 cagcccgttt acgaacgtcg gcttcgacgt atttgggcct tggtcggtga agtcacgaaa 5280 gacaagagga tccatagcta acgcaaagcg ctggggacta gtattcacgt gcctcagccc 5340 tgctaaactg cttaggtgtg attgcggcac taattttgta ggagctaaga ccgaactcga 5400 tagcgcaatg aaggagctta ataaggaggg tgcagagaga ttcgtcagag agcaaggatg 5460 cgagtggatc tttaaccccc cacacgcgtc gcatttcgga ggtgtgtggg agagacagat 5520 ccgcacaata cgacaagtcc tcgacggcat gttcgcacga gttaggagac caccaactga 5580 cgcatgattt gctagtaacg ctaatggcag aggtcgctgc gatcgtgaac gccaggccaa 5640 tatcagctct accgatggac gctgaccagc cgcagaccct ctcacctgcg atgcttctaa 5700 gcatgaaaga gcgccctact ggaccccctc caggccgttt cgtgcccaca gacatctacg 5760 cacgtcgccg ctggagacgc gtccagtacc tggcggagca gttctggtcg agatggagaa 5820 gggagtacct ccagaatctc cagccccgcc agaagtggaa cggagcaacg gaaagtctgc 5880 acgcaggcga tatcatacta ctaagggaca agacggagca ccgcaacgac tggccaatgg 5940 gacgagtaac agaggcggtg aagagcgagg acggtagagt taggaaggcg aaggtagagg 6000 tagttagaga cggagtcaag aggacctact tgcgccccat caaggaactc atcctgctta 6060 tccgcgcaga tgacgacaaa gagagccaag agtagggtag aaaagattag aatagcaagg 6120 attgaaatcc ttgggcgagg ag 6142 // ID DIRS-43_NV repbase; DNA; NEM; 2084 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-43_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-43_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2084 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2084 RA Kapitonov V.V. and Jurka J.; RT "DIRS-43_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 440-440 (2007). XX DR [2] (Consensus) XX SQ Sequence 2084 BP; 517 A; 582 C; 462 G; 523 T; 0 other; tttctacttg atggcatgac taatggcttc aaactcgtat ctgacgacac tacgttatac 60 ccagcggcag tagataaata gaaatcggct acaaacgact tagcgcaata ttacatagaa 120 aaacagatac ggcaagagtt agcggcgggc aattacgtgc gaacatctgc caagcctgct 180 atcgtgagcg ccttcggagc tattcccaag ccgaattcag ccgacttccg cattatccac 240 tactgtagcc ggccaccagg gaaagctgcg aacgactaca tgacaaacaa ctactttaaa 300 tgccaaactc ttgacagcgc agtcaagcta atcaagccca attactactt ggctaagatt 360 gatctaaaaa gcgcgtatcg ctttgttcct attcacccta attcctataa tgcgatgggg 420 aatgtaaatg gcgctttacg ggtgacagtg ttgatacata catgcatgac accaaattag 480 cgtttaggtc aaagaaggca ccagagattt ttaaccgctt aacgcaggcg gtgcggctta 540 cgaagcgcag aggttactcg tcggtaccag gaatgcgagg cggcgcataa aattctactt 600 gagttattgc aaagcttagg tttcacctgg gaccaagcgg tcccaccgtg ccagcgcttg 660 accgttttag gcatagatat tgctagcgta acatgcacgc tttcattacc taaggaaaaa 720 ctggcagaac ttagggctct tatcaaccag ttctcacgga tgtcgcacgc aactaagcag 780 gagctccagt agcttgcggg taaaatgaat tgggctgtgc gcggcgcgcg cacgttcacg 840 agacgcgtca tagatgctat cgccccgctg cgcagaccta agcaaaactc gcctcactcg 900 cgcattgcac gctgatatcg cgtggtggaa ggaattcatg gattccttcc acggcaaggt 960 atttttctta gacgacatcc cgatagacgt cttgtttacg gacgcatcct cgctgggggc 1020 aggcgctttt tttccgcggc gaccacttac aagtggaatg ggccacggca atgcccgaat 1080 gcgctcactt gcacatcaac ctgatggagg taattcttgg cgcgaacccg cttctccaca 1140 cagtcaacca ggttgtcatg cgtgttatcg acaagggctc gtcacgcaat cacttcataa 1200 tggcttgcct tcgtgacatg ttttggttgt tggtcccttc tcgcgacaac acaatcgcag 1260 atgcactctc gcgcctaaaa cctctccctc tattgtaggt tcgctgccgg acagcgtttc 1320 ggatcgcgtg cagcactgtc ggacttagaa gtcgcggagt accggtcttc ttccctcgcg 1380 gattcctcta agcgtacata aaaaaactca cctaaagtcc tatctaacct tctattgttt 1440 catgggttac caacctgtgc ctgcaagcac agagacggtt tgccgctacg cctagctcgc 1500 tcatacaagt actcttccat tccgcagtat cgagcagtat ctcaacatta tcgttttcct 1560 gcacaatgcc gcgcgctacg ttaatccgct ctctaacaat tggcttatct cgtgcaacct 1620 taaggggatt agaagcaagc ttggagactc gcgatcacgc aagcaaccga taacgcctga 1680 gctctttctg cgccttgcat cccgactcaa cctaaactca tctttgggcg ccaacttctg 1740 ggcagcctgc cgggtggcgt tttacggttt ctttcggaag agtaacgtca tggtccaatc 1800 tctctccgcc tttgaccccg ccaaacacct tactagaaga gacttcacct ttcacagctg 1860 gagtgtattg gtatcagtaa agtggaccaa aacaatccag ttccaacagt acaagcttac 1920 tatgcccctg ccacgtatcc ctgactcttt actttgtccc gttgcagcgc tctttaaggc 1980 cttcaccttg attcccaaca caccacacaa ctttccagcc tttgcagaat ctaacaacct 2040 caagcctctt acgtaatcgc ttcgctcagt cgttgacgcc gctt 2084 // ID BEL-2-I_NV repbase; DNA; NEM; 5407 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the starlet sea anemone BEL-2-I_NV autonomous DE LTR retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-2_NV; KW BEL-2-LTR_NV; BEL-2-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5407 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5407 RA Kapitonov V.V. and Jurka J.; RT "BEL-2_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 367-367 (2007). XX DR [2] (Consensus) XX CC BEL-2_NV is a very young family of BEL LTR retrotransposons. CC BEL-2-I_NV is an internal portion of BEL-2_NV and it encodes the CC BEL-1_NVp polyprotein composed of the protease, reverse CC transcriptase, CC RNase H, and integrase domains. It is flanked by 100% identical CC BEL-2-LTR_NV LTRs. BEL-2_NV is characterized by 4-bp target-site CC duplications. XX FH Key Location/Qualifiers FT CDS 113..5365 FT /product="BEL-2-I_NVp" FT /translation="MTTEEKFTKHIGLADIKLKDIMSTTKDTGELEIALES FT AESIIKSLEKVKDATADYLLDNEKELSYIQEWSAKAKAEIQPFREMRLEIK FT KRLENARDQEKEEEMEKELAMKKKFGDLAAKAGNSGMVESSPGKPGMVQAV FT KLQKYTITPFEGDYKDWTRFWNQYTVEVDGSTIAQISKFNYLLELVKGKPR FT DDILGLPHTPEGYEEAKRILQNTYGKDIRVHRALIKDLEDLPTISDITKLS FT SIHDFYNKLARIVRTLSTMQKLESAQSAVYTLLDKLGPVREVIVQRDDDWE FT GWGLIQLVENLGKYVDRNPILQGEDTPTPSLTRKPQGGQGGQHNGRERMLM FT HQQNQGPHPPQCVYCSDKSHKSKDCTKVLDTASRREILMQKKLCYNCTKGG FT HMATKCKAGNCAKCNSRHHTSICDRVQSSLPPSTPANPGNSRDRFYGAVDQ FT VHTTLHATAIANVNGIPARIMLDSGAGSSYISSNLLTKLNLKPSRVERRVI FT EQMYGTVDKQVELYKIQLGSTVLDSFRMELHCINAEKPIITHLPNPRIPEL FT KKKYNKLRRLTFSDETSTEDKLPVHVILGAADIQRIKSTEPAVLGSDPDKD FT PGAEFTMLGWVIGGKAAISATDTEKGFFLSNSQEEFNQMCSQEVLGLKDSD FT EEGGEFHKNFQDGLQRLDDGTYSTRLPWKPDHTSLPSNKRLALARLASTTR FT RLEKTGRIEEYHDIMMEQLKEGILEPAPDTPTGENVHYIAHTMVTRDDAQT FT SKLRIVYDCSAREDDNTPSLNDCLEVGPPLQPMLFDILLRNRMNRLCLTGD FT IQKAFLQIKVDTKDRDCMRLFWYDNLKDRNIVEYRFARVIFGSGPSPYILG FT ATLQKHVASYSDKYPETVYQLLTNTYVDDVQTGGDDPEQLLRFKQEASEIM FT ESGGFQLHKWHSNVLEAEESTSAERADRAVDRPPVKILGIPWDKNKDELTI FT AFSDSTEEEVSGALTKRKMLAVINRIYDLLGLASPVTVIGKVLYSKVCLSE FT KRWDEAITDVEIVREWNKWLKSMKACPSVSIPRSVVDQHVTRIELHGFSDA FT SKTAVSAAIYVVAHHADSSVRQTLLVAKSRVAPKNQSIPRLELVGAHTLTK FT LMTHVKEVLQGQPIQIYQCWVDSTTILYWIKGKGTWSQFVRNRTKVIQERD FT YLKWNYVPTGENPADIGSRGAGPGELSDMWLHGPNWLSDKAKWPPQPEVTD FT NDEVASETVKSRKEKLLVATEEPEEKGQVDALLEQCSSYWKLRRVVAYIQR FT FGHNCRSKSKRTGPLTTEEINKAESTLIRRAQAAKREKVEASMEVQIGEDG FT IARCVGRIAGYQPIILPRDHKLTTLIIKQVHEKAIHGGVSMTMSLVREKFW FT VPKLRAQVKRVIHNCNKCKRYRIKPVLTPGSTASAQLPSFRTEFSEPFDVT FT GVDFAGPIYYRTKSEQGKAYIALFTCAATRAVHLKLCPDLSAPNFQRALKE FT FVARRGCPQMIVSDNGKTFVATGKWLSVLKKDESLSNYLASQAIIWRFNMS FT RAPWWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLV FT YQGEEFDEPVITPNLLLRGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKED FT LKKRFTREYVRSLEERQQKHEERSGEQLKVPEKGRVVLLKEDVKNKAQWKI FT GRVVEKITGRDGVVRGVKLKMGNGYVIERPLQLICDLEIGGDDPGIKLNPK FT AQVFIPRVGSRRQAKDSAKDNIKGIFLLEED" XX SQ Sequence 5407 BP; 1695 A; 1195 C; 1458 G; 1059 T; 0 other; ccaaaagtgg cgaccacgcc aggacacata tctgaggagt tttaacgccc ggtgcggcta 60 catttctgcg agttttgcga gaggaattca accaacgagg gagtttgaaa acatgacaac 120 cgaagagaag ttcaccaagc acattggact tgccgatatc aaactaaagg atataatgtc 180 tacaaccaag gatactggag agctagaaat cgcattggag agtgcagaga gcatcatcaa 240 gagtttggag aaggtcaagg atgctacggc ggattattta ctcgataacg agaaggaact 300 tagctacatt caggagtgga gtgctaaagc gaaagcggaa atccagcctt ttagggagat 360 gcgactcgaa ataaagaaga gactggagaa cgcaagagat caggagaagg aggaagaaat 420 ggaaaaggag cttgcaatga aaaagaagtt cggagatttg gctgctaagg ctggaaatag 480 tggaatggtt gaaagcagtc cagggaaacc cggaatggtt caagcggtca aactacaaaa 540 gtacaccatc acgccatttg aaggagatta taaagactgg acaaggttct ggaatcagta 600 cacggtggag gtggatggat caaccatagc acagataagc aaatttaatt acttattaga 660 attagtgaaa gggaaaccaa gggatgatat tttaggctta ccccacaccc ctgagggcta 720 cgaagaggca aaaaggattc tacaaaatac ctatggaaag gacattagag tccaccgcgc 780 ccttattaaa gatctggagg atttaccgac catcagtgac attactaaat taagtagtat 840 tcacgatttt tataacaaat tagccagaat tgtgcgcaca ctctccacca tgcaaaaatt 900 agaaagtgcg cagagcgctg tttacacgct gttagacaaa ttagggccag tccgggaggt 960 gatagtgcaa agggatgatg actgggaagg gtggggactt atccagctag ttgaaaatct 1020 tgggaagtac gttgatagaa acccaatctt gcaaggggaa gataccccca ccccgtcact 1080 tacgaggaag ccccagggag gtcagggtgg gcaacataat gggagggaaa gaatgttaat 1140 gcaccagcag aatcagggac cccacccccc acagtgtgtc tactgcagtg ataaatccca 1200 taaatcaaag gactgtacaa aagtgttaga cacggccagc aggagagaaa tcctaatgca 1260 aaagaaattg tgctacaact gcaccaaggg ggggcatatg gctaccaaat gcaaagcggg 1320 aaactgtgca aagtgcaatt caaggcatca cacctctatc tgcgacagag tacaaagcag 1380 cctcccaccc tcaaccccag ccaacccggg taattctaga gatagattct atggggcagt 1440 ggaccaggta catactactt tacacgctac ggccatagcg aatgtcaatg gcatcccagc 1500 gcgcatcatg ctggatagtg gagctgggag ctcatacatc agctccaacc tactaacaaa 1560 attaaacctt aaaccaagca gggtcgaaag gagggtcatt gagcagatgt acgggacggt 1620 agataagcag gtagagctct acaaaataca gctgggctca actgtccttg acagctttag 1680 aatggagctc cactgcatta atgcagagaa acctatcatc actcaccttc ccaacccgag 1740 gatcccagag ctaaagaaga aatacaacaa actcagaaga ctgaccttca gtgatgaaac 1800 ctcgacagaa gacaagctac cagtacatgt catacttggc gcagctgaca tccagcgcat 1860 caagtccact gagccagcgg tgcttggcag cgacccagac aaagaccccg gagctgagtt 1920 caccatgctt ggatgggtga ttggaggcaa agcagcgatt tccgccacag acacagaaaa 1980 gggtttcttc ctcagcaact cacaggaaga attcaaccag atgtgctccc aggaagtact 2040 tggactgaag gacagtgatg aagagggagg agaattccac aagaatttcc aggatgggtt 2100 gcaaagattg gacgatggaa cctactccac ccggttacca tggaaaccag atcacacatc 2160 cctaccgtct aacaaaagac tagccctagc acgtttggcg agcactaccc gtagactgga 2220 gaagactggg aggatagagg agtaccatga cattatgatg gagcaactga aggaagggat 2280 cttagagcca gctccagata ctccaacagg ggagaacgta cactatatcg cacataccat 2340 ggtgacgagg gacgatgctc agaccagcaa gcttcgcatc gtttatgact gttcagcaag 2400 agaggatgac aacaccccat ctctaaacga ctgcttagaa gtaggccctc cattacaacc 2460 tatgctattt gacatattat tgcgcaaccg catgaatcgt ctctgtctca cgggagacat 2520 tcaaaaagca tttctgcaga ttaaagttga caccaaggat agagactgca tgagactgtt 2580 ttggtacgac aaccttaaag accgaaacat tgtagagtat aggttcgcaa gggtaatctt 2640 tggctcgggc ccaagcccct atattctggg cgctactctg cagaaacatg tggctagtta 2700 cagtgacaag tacccagaga ctgtgtacca gttactaact aacacatatg tagatgatgt 2760 acagacaggt ggagacgacc ctgaacagct gcttcgattt aagcaggaag caagcgagat 2820 catggagagt ggaggattcc agcttcacaa atggcacagc aatgtccttg aggcggagga 2880 gagtacctca gcagagagag cagaccgggc cgtggacagg ccaccggtaa agatcctagg 2940 aataccttgg gacaagaaca aggacgagct tacgatcgca ttcagcgatt ccaccgaaga 3000 agaggtgagt ggtgcactca caaagaggaa gatgctagca gtgatcaatc gcatctacga 3060 tctgctagga ctcgcttcgc cagtcactgt gattggcaaa gtactgtata gcaaggtgtg 3120 tcttagtgag aagaggtggg acgaggcgat tacagacgta gagattgtta gagagtggaa 3180 caagtggctt aagagcatga aggcatgtcc atcagttagt attccgcgca gtgtagtgga 3240 tcagcacgtg acaaggatag agctacatgg gttctcagat gcgagcaaga cagccgtatc 3300 ggctgcgatt tatgtagtag cccatcacgc agacagttct gttaggcaga cattgcttgt 3360 cgcgaagtca agagtagccc ctaaaaatca gagcattcct cgtttggaat tagttggcgc 3420 acacaccctc acaaaactaa tgactcatgt taaggaagtt ttgcagggtc aacctatcca 3480 gatctaccag tgttgggtcg acagcaccac catcctctac tggatcaagg gcaaaggtac 3540 ctggtcacag ttcgtgcgca accggacaaa ggtcatccaa gagagggact acctcaagtg 3600 gaattacgtc ccaacgggtg agaacccagc agacatagga agcagaggag cgggaccggg 3660 ggagctaagc gacatgtggc tgcatgggcc taactggctg tcagacaagg cgaaatggcc 3720 tccacaacca gaggtaacag acaacgatga ggtagcgagt gagacggtga agagccgcaa 3780 ggagaaatta ctggtggcga cagaagaacc agaggaaaag ggacaggtag acgctttgct 3840 cgagcagtgt tcgtcctact ggaagcttag gagagtcgtt gcttacatac aacggtttgg 3900 tcataactgc agatccaaga gcaagcgcac aggaccgctc accacagagg agatcaacaa 3960 agccgagtcc acactgattc gccgtgcgca agcggcaaag agggagaaag tggaggcttc 4020 catggaggtg cagataggcg aagatgggat agctagatgt gtcggacgca tcgccggata 4080 ccaacccatc atcctaccca gagaccacaa gctgacgact ttgatcatca aacaagtcca 4140 cgagaaagcc atacacgggg gagtgtcaat gactatgagt ctagtccggg agaagttctg 4200 ggtaccaaag ctgagggctc aagtaaaaag ggtcatacac aactgcaaca aatgtaagcg 4260 atatcggata aagccagtgt tgactccggg atcaacagcc tcagcacagc tgccgtcatt 4320 ccgtacggag ttctctgagc ctttcgacgt aacaggggtc gactttgcag gcccaatcta 4380 ttatcgcacc aagtccgagc aaggcaaggc atacatcgcg ctgtttacgt gtgcagccac 4440 tagggcagtc catctaaagc tctgcccgga tctatcagca ccaaacttcc agagagcgct 4500 caaagagttt gtcgcaagga gaggatgtcc tcagatgatc gtgagtgaca atggaaagac 4560 ctttgtggca acagggaaat ggctttcagt gctaaagaag gacgaaagtc tatcaaacta 4620 tttggcctct caagcgatca tctggagatt caacatgtca cgagcacctt ggtggggagg 4680 cttcttcgag cgcctagtcg gagtcatgaa gaatgcgctc tctaaagcag ttgggaggag 4740 ccttctcaac tactgcgagc ttgaggatgc gctcctagac gtagaaacag taatgaacaa 4800 ccgaccatta gtgtaccagg gggaagagtt tgatgaaccc gtcatcacac ccaacctgtt 4860 gctcaggggg agaccagtcc ccatcctcga agaagactta gagaagttgt cagatgccgg 4920 aaacgtgaca cgacggatga ggtttataca gcgtagcaag gaagacctga agaagagatt 4980 cacaagagag tacgtacgat ctctagagga gagacagcag aagcacgaag aacgcagtgg 5040 cgagcagctg aaggtgccgg agaaagggcg cgtagtcctg ctcaaggagg atgtcaagaa 5100 taaggctcaa tggaagattg gacgagtagt ggagaagatt acaggaagag acggcgtagt 5160 ccggggagtc aaactgaaga tggggaacgg atatgtgata gaacgccctc ttcagttgat 5220 ttgcgaccta gagattggtg gggatgatcc ggggatcaag ttaaacccta aggcgcaagt 5280 attcatccca agagttgggt caagacgtca ggcaaaagac agcgccaagg acaacatcaa 5340 gggcatcttt ttactggaag aagactagaa catttatgct gctgtagaca cataaatggg 5400 gggaggg 5407 // ID Gypsy-39-LTR_NV repbase; DNA; NEM; 188 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-39_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39-I_NV; KW Gypsy-39-LTR_NV; Gypsy-39_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-188 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-188 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-39_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 510-510 (2007). XX DR [2] (Consensus) XX SQ Sequence 188 BP; 43 A; 43 C; 36 G; 66 T; 0 other; tgttatatat tcagattgct attgtcctgt acagtagccc ctccgactgc tcatgcgcag 60 ttaggagagg gcgagcatgt gctttttagt tcggccatgt ttacgttcct gagttaacgt 120 ttaacagtgt tacataccgt ctcttttatt ggattattaa cttcaacctg acttcccaat 180 acactaca 188 // ID Gypsy-30-I_NV repbase; DNA; NEM; 3866 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-30_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30-I_NV; KW Gypsy-30-LTR_NV; Gypsy-30_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3866 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3866 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-30_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 491-491 (2007). XX DR [2] (Consensus) XX SQ Sequence 3866 BP; 1227 A; 863 C; 957 G; 817 T; 2 other; tggtgtcaga agtggctgct ttcagttaaa gccgtgggga tttccgctga gaaattctgc 60 tgcaacacga acgctgaaag tacagatatt tcgaagttta gttgtcccgt gagtccgcca 120 tcttggattt tagaaatcgc cgaaaacact ggggatcgat cacaacatgg caacgtatca 180 gatacccgct cccgaaggaa tgaattgcaa tggagacgtc tctagtaatt ggaaaatatt 240 cagagaagca tacgaggact atcttatagc gacaggtctt gacgaaaaag caaagcgatt 300 gcaagtagca accctgaaga gcttgatggg gacggaatgt aaaaagatct tgaagcgact 360 ccagctgtcg gtggccgaga tggaggaccc aggagtcatt ctcagaaaat tggaagaaca 420 ctttgtccct gtcaggaata tcttatacga aagatacata tttcacaaca ccgagcaatt 480 ggcccatgag agtattgacc aattcctgat taagctaaga cagctagcag aaccgtgcct 540 ttttggcacg ctagaagatg aaatggttag agacaggtta gtcctggggt gaggagatga 600 cctatgtagg ggacctctgg cagtctgagt ttcagcttct ttgggttaag cttcaggttt 660 acttgtcttg ccctgaaaac cagccatgca gccaacaagt accaagctta aactgtatga 720 tgacagtatt gtgccarcac ttggagaatg cgacttggta tgctgttaca atggagagga 780 acacaagctg aatttcaaga ttgtaagggg aacgcagaat cctctactgt ctggagrgac 840 atgcaccaac atgcagctga tcacagtcca tgtagtgaat aacatctgca cacctcagaa 900 aacggcgcca caagacatat tcactgaata tcaagatgtt ttccaaggcc ttggatgtct 960 gccaggcgaa taccatctcg aggttgataa agatgtccag cctgtaaagc atacgccacg 1020 acgagtcgca atacccttga aagcagagct gaaagcacac attgcagatc tcgagaagat 1080 ggaagtctta aagaaagtca cagaaccaac ggattggata agcagtcaag ttgtcgtacg 1140 gaagggttca aagcttcgac tttgtattga tcccaaggac ttaaacaaag ctttgaagcg 1200 ctcacactac ccgatgccga ccattgaaga tatcttacct gaattagcga aggcaaaagt 1260 tttcagtgtt gcagatgcta agaatggttt ttggcaagta aagctggacg aagacagcag 1320 cttcttgacg accttctgga caccgttcgg gagatacaga tggttgagaa tgccatttgg 1380 aatcgccaca gcaccggaag aataccagag gcgccaacac gaagtacttg aaggtctcca 1440 gggcatctat gttgtcgcag atgacatcct catcacagga caaggagaga cagaagaaga 1500 agcacttcga gatcatgaca gtaatctagt tgcattactg gagagggcaa gacaagtaaa 1560 cctgaagctt aacccaaaga agctgaaact cagactgcca gaggtcccct acataggtca 1620 cctcctcacc ccgggaggcg taaaaccaga tcccgagaag gtccgtgcag tacaggaaat 1680 gccgcgtcca gatgggaaaa gcaaagctga gaaaataaag gctgtccaac ggttcctcgg 1740 gtttgtaaac tacttagcaa agtttgtacc gcatctcgca gatgagagtg agcaactaag 1800 acgtctcaca gacaaagaag cagagtgggc gtgggaacaa caccaccaag acgcgtttga 1860 caggatcaag aatctagtag caaatcatcc ggtcctacga tattacgatg tcagcaagcc 1920 agtcactatt cagtgtgaca gcagcgaaac tggtcttgga gccgccttac tgcaggatga 1980 tcagccggtg gcattcgcat caagaacact gaccccaaca gagcgcggct atgctcagat 2040 cgaaaaagag tgcttggcga tagttttcgc gtgtgaaagg tttaaccagt acatctatgg 2100 aagagaatcg gtgcatgtac agagtgacca caagcctctg gaagcaatct tccccaagcc 2160 gttgacttca gctccaaagc gtttacaggg catgctgctg cgtctgcaga agttcaactt 2220 agatgtacgt tataagaaag gtgtagagat gtacctagca gacacactat ctagagcacc 2280 attgccggag gtcggtccag ccaagaacag tctaagacca gaacacgaag acgtctgccg 2340 gctagacata gagcaagtta atccaaccga atttctcaga gtatcagacg acggtctcaa 2400 gaggattcag aaggagacgg agtgtgatga gaagttgcaa cgtctaaaag aaacagtgct 2460 acaaggctgg cctgagacaa aacaagaagc agatccgaga gttgctgaat attggacata 2520 ccgtgatgaa ataagcgtct ataatggagt gctgtacaag ggagagagag ttattgtccc 2580 gtcttcccta cggaaaacac tcatgtctcg cgtccatgca agtcatcaag gggagcaagc 2640 atgtctccga agagcgaggg atgctttgtt ttggcctggg atgagccaac agatcagaga 2700 tctcgtaagc agctgtagcc tctgcgcaga tcacgcgcca gctcaagcca aggaaccatt 2760 gatgacacca gagcttccca aacgcccctg gagtatcgtt gcgcaagacc tctacactct 2820 caacgggaaa gatttcctaa taacagtgga tgcttacagt ggattctggg aagttgatga 2880 actaacccaa gctacagctg ccaacgtcat aaacaagact aaacagcact tcgcgcgtta 2940 cggaatacca gacagggtct acagcgataa tggtccacag tttgctaatg cagagtacac 3000 cacgtttgcc tccagttgga agttcgaaca ccagacatcg tcaccgtacc acagccagtc 3060 caacgggctg atagaagcag ctgtgaaatc cgcaaaaaac ctgcagaaga aggcgaataa 3120 atcggggcga gacgtatgga tgagttttct ggaccatagg aatacgccaa ccgaaggtat 3180 ggacagcagc ccagtccaaa gattgatgtc aaagagaacg aagacaactc taccgctagc 3240 acaacatcta ctcgaaccgg agcttcaaca agatgtaaca gaaaagctaa cgctgaaacg 3300 caaaaaggcg aagaaacatt ttgacagggg ctcaaaggaa ctaccggagc taaacatcgg 3360 agaacctgtc agaatgacca gcctcccaaa agaaaccaag aaatggaaga aaggggtttg 3420 cattggcaaa gtggccccca gatcatacct agtcgacatt gatggctcta tatatcgtag 3480 gaacaggaag tttatacgca atactaagga tcatgcagag gagttagtaa gggagagcct 3540 gccgatgcag cacccacaac cagtgtctgt ggaactagat actggaagca cggatgaaaa 3600 tcatctgcca acaccaccag aagtcaaccc tgaagtgacg cagcctccgt tgagaacgac 3660 aaggagcgga aggatcatta agcctccagt caggctagac ttgtagaaca tggaccctgt 3720 ccaggacgtt aaatacttat ttaaaaaaaa aaaaaacagt ttagccaaag agactccagg 3780 caatgttata atttggaact ttacacttgt catcgttagc tacatttata atcatgtttt 3840 gttatttttt tgtaagaaag gggaga 3866 // ID Gypsy-71-I_NV repbase; DNA; NEM; 2337 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-71_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71-I_NV; KW Gypsy-71-LTR_NV; Gypsy-71_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2337 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2337 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-71_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 570-570 (2007). XX DR [2] (Consensus) XX SQ Sequence 2337 BP; 753 A; 500 C; 577 G; 507 T; 0 other; gccaaagttt taagtgcagt ggacgctaga aacggatttt ggcatgtgca gcttgacgag 60 gatagcagtt atctcactac cttcgtcacg ccatggggtc gtttccggag ggccagaatg 120 cctttcggga tttcaccggc accagaagag ttccaaagac ggaaggcgct ggaaggcctc 180 gatggcgtga tgctcatatt taacgatatc ctagtgtttg gtgtgggtga gagtaaagaa 240 gaagcgatcc tcaatgacga cgtaaggcta agagctctat tcgagaaatg ccgcgcaaaa 300 ggattcaggc taaataaaga caagcggagg cttcgtctac ccgaagtgtc gtttatggga 360 caccttatct cggagaaagg tctgaagccg gatcccgcca aagtccaagg agtccaagga 420 atgcccgagc ccaagaacaa gaaggatgtg aagaggctaa tgagaatggt gaattatctc 480 cagcgattcg ctcccaatct atcaaatgta tctgctccga tcagagacct cctgaaagag 540 gataacaagt ttcactggga tgacggagta caaggtcgca gtttagcgga agtgaagaga 600 atcatttcgg aagcccccac tctgaagtac ctcgatccca agaaatcagt tgagcttcag 660 tgtgatgctt cccagagaag cgttgggtct tgccttatgc aagatggcca accggtggcc 720 tatgcatctc gagcgatgac acatatagaa actaactacg cccagatcga gaaagatatg 780 ttagcaattg tgtttggaga agaacgattc cagcaatgct tttttggtat agagaaatga 840 aatagagacc gacaacaagc ccctcgagat catcttcaag aaatgtctga taagcgctcc 900 aaagcaactg caacaaatgt tactcaggtt tcagaagttt gacctagtag tcagctacaa 960 gagagagtca gagatggtcc tggctgacac atggagccgc gcattcgacg gccgtgtgca 1020 ggaaaatact accagtaacg aaaaagatgt gatatgaata gacagaggag agacggagag 1080 ggatgtcaag agtatcaata tgatacagta ccttcccgtt acagaagaaa cacagaatgc 1140 tatccaaaca gagtctgata agattctgag agagctcaag tccgtcataa aaaatggatg 1200 gccgacaacg aaggaagagt cccagtccct ctcagaaact actttctctt caaagacgag 1260 cttaccatgc atggagaaag gcgtgttttt ccgacaagta tgagatcttg aatgttggct 1320 aagaagcata ctagccatat cggagcacaa ggttgccttc ggagggcgcg agagactctc 1380 tattggccca acatgaacaa ggaagtcgaa gaattcgtct taaagtgcga aacatgcaac 1440 agcaatccag ctactcagga caaggggcct ttgatctgtc atgaaattcc ttaacgacca 1500 tgggagaaaa tagctgcaga tctatttgag tacgacggaa aggactctct aatttctgta 1560 gattacttct ctagcttctt tgagattgac aggatacggt caaagggagc tccagagatc 1620 ataaggaagt agaaggcgca ttttgctata cataccggat agattcatgt cggataatca 1680 accatttgcg tccagggaat tcgatgactt tgccaaagca tacgatttcg agcaagttac 1740 gagctccctg aactatccgc agttaaacga caagatagag aatgctgtga agacagcaaa 1800 gcgcctgatg agtagagcca aagagtcggg tagtgaccca tacttggcat tactagattg 1860 gagaaacact cctacggaga tacttaacac atcgccagca tagcaattgt tcagtagacg 1920 aacgaagacg ttgctgccaa ggtcaaaaaa gctcctaaaa ccgagagttt cggatgatgt 1980 agaagagaaa ataaagtacc aaaaagccaa gcaaagtatt cactacaaca aaggtgcgaa 2040 gaatttgatc gagcttcgcc ctggctacag cccacaatta aagtaggaaa gagaaaagag 2100 tggaccaaag cgaagataga agaaaaggtt gacatccact tctaccaaat gcgcacggaa 2160 tgcggtcaag tatttcgact taacagaaga cacctgcgtc gcacatctga agtaatggtg 2220 ccacgcgaag aattggtcat gccgtcatct gcacctgtta caatcaaaca tgtacctgaa 2280 aaggaaacca cgactgctca aaaaccgcca tctgtttcta aagcaaagcc cgcagtt 2337 // ID hAT5-3_NV repbase; DNA; NEM; 3305 BP. XX AC . XX DT 30-DEC-2007 (Rel. 12.12, Created) DT 30-DEC-2007 (Rel. 12.12, Last updated, Version 1) XX DE Starlet sea anemone hAT5-3_NV autonomous hAT DNA transposon - a DE consensus sequence. XX KW hAT; DNA transposon; Transposable Element; 5-bp TSDs; hAT5 group; KW NVREP484; hAT5-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3305 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3305 RA Kapitonov V.V. and Jurka J.; RT "hAT5 - a novel group of autonomous hAT DNA transposons RT characterized by 5-bp target site duplications."; RL Repbase Reports 7(12), 1190-1190 (2007). XX DR [2] (Consensus) XX CC hAT5-3_NV is a very young family of hAT DNA transposons and it CC belongs to a novel group of hAT transposons, called hAT5, CC generating 5-bp target site duplications upon their insertions CC into chromosomal DNA. The hAT5 transposase is similar to the CC standard hAT transposase (they share conserved catalytic motifs CC and converge with each other after a few rounds of PSI-BLAST); CC identified hAT5 transposase sequences form a distinctive CC phylogenetic cluster and they are also present in different CC species, e.g. sea urchin. hAT5-3_NV is flanked by 12-bp TIRs and CC encodes a 802-aa transposase. The N-terminal portion of the CC transposase contains the C2H2 zinc finger motif. XX FH Key Location/Qualifiers FT CDS 710..3115 FT /product="hAT5-3_NVp" FT /note="transposase." FT /translation="MSKRTVFNNLWLQDPLFPWVAQAQESTKARCKMCSVT FT FELGNMGKQALISHAKGKKHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAA FT ERTMTVPPPPVDLSQVASSSDSSKGTIKKYVTKDETLKAEVLWAIKVLMSH FT YSCNSSAGTDKLFSNMFPDSVIAKQFQCGATKCSYLICFGIAPFFHDELMK FT RLQEQGTMYVISFDESLNKVIQKEQMDLIVRFWDVQKNKVVSRYIDSQFLG FT HTRAADLLQSFKLGLQKLNPANLVQVSMDGPNVNWKFLEDLLEDREQTDPD FT LPKLINIGACGLHVVHGAFKYGATATGWRLDKLLRSLWYTFSDSPAKREDY FT EAISGSSMWPLRFCGTRWLEDLPVAERAVAIWPNIKKYVDEVSKLPKSKIP FT TSQSFKNLQAFVQDPLIVAKLEFFISIARILGPFLKKFQTDQPMVPFLTQD FT VQTILEAILSKFVKKSVLQEATTCAKLANIDVSKSDNLLPPRKVDVGFAAK FT MSVHKMESTKQATPLQILEFQNNCLEFLKQLSSKVMDRSPLKYKMARNLVS FT LNPIYMASNPEAATTRFSNVLQQLISHKMKSTHCCDIALQQYKAFLADVER FT YSKEDFKSYQSSDKALDVFLAEYFHQKPQYADLWQTVKMLLILSHGQSCVE FT RGFSDNKDIVSNNMHQDTLVGFRRAHSGVKSLECPIEDSITTELLTSCKYA FT SNRYRQSLAEKKSIEAKTHKESLKRKVEEDIKQAKKKKQKLETTATALLKE FT ADDLATNAEMKGDFSILAKSNALRVKSKEKRKEIEKEEQNIDLLQKKLKSF FT " XX SQ Sequence 3305 BP; 1091 A; 591 C; 666 G; 957 T; 0 other; cagggttccc acagtcaggg aaaagtcagt gaaattcgat tttttttcaa ggtcagggaa 60 ttgtcaggga attatgattt aagtcaggga aatttgataa ttctcaaaaa gtcagggaaa 120 agtcagggaa taattcttat ttttcaaaaa tcattattat gaattgtgtt ggcgataatc 180 aagcaacctc actgttaatt aaaagtttca aaaatcgcaa tacatcagta taaacgaatt 240 atcctatgtg gttttcctgt ggaggaaaat gaagtggagg actgggtctg aattatgtcg 300 gccatcttgt tgcagtattg gaaagcacgt ggaggtaggg ctggaattaa gtattttagc 360 tattttaagg gcattatttc ataaccttag cagtgataga gtggggggat gcataatgta 420 acaatttatt gatcatttaa tgacaaaatc ggtaaactaa cgacatttaa ttcaagatat 480 ttttgtatgc agcgaatttt ttcgtaactg ttcagtctta gtcttaagct ttaaaaatta 540 tttttgttta tcctgatttg cattttgaaa aagaggaaac cacgcctgaa cttagttaga 600 tatacatttt ttttgtccat tctcattgca tttaattgca gcatgacttt atacaaaatt 660 atttacagtc gtaacactta ttttttataa cttttgtatt ggtttgtaga tgagtaagcg 720 aactgtattt aataatctat ggcttcaaga cccactattt ccttgggttg cacaagctca 780 ggaatcaact aaagcaaggt gtaaaatgtg ctctgttaca tttgagcttg gaaatatggg 840 aaaacaagca ctgataagtc atgctaaagg caaaaaacat cttaggagag ttgctccatc 900 gacacaacaa gtttctttga actcttttgt cactgtgcaa aagcaagaat ccgaacaaaa 960 ttcttcagca gcagaaagga caatgactgt accacctcct cccgtcgatc tttctcaagt 1020 tgccagttca tctgattcat ctaaaggcac aattaaaaag tatgttacca aagatgaaac 1080 tctaaaagca gaggtgctgt gggctataaa agtcctcatg tctcactatt cctgtaatag 1140 tagtgcaggc actgacaagc tattttccaa tatgtttcca gacagtgtaa ttgccaaaca 1200 gttccaatgt ggagcaacaa agtgttcata cttgatttgt tttggcattg ccccattttt 1260 tcatgatgaa ttaatgaaaa gacttcaaga gcaaggaaca atgtatgtta tctcatttga 1320 tgaatcgctg aataaagtga tccagaaaga acagatggat ttgattgtgc gcttttggga 1380 tgttcagaag aataaagttg tatcaagata cattgattcc cagtttcttg gtcacacaag 1440 agctgcagat ttacttcaaa gtttcaagct aggtctacaa aagctgaatc ctgcaaacct 1500 tgtgcaggta tcgatggatg gtcctaatgt taactggaaa tttcttgaag acctattaga 1560 agatagagaa caaactgatc cagatcttcc aaagctcatt aatattggtg cctgtgggtt 1620 acatgtggta catggggctt ttaaatatgg agctacagcc acaggctggc gtcttgataa 1680 acttctgagg tctctctggt acactttttc agactcacca gcaaaaagag aagattatga 1740 agccatttct ggaagttcca tgtggccact acgattttgt ggaacaaggt ggctggaaga 1800 tttgccagtg gcagaacgag cagtggctat ctggccaaat atcaagaaat atgttgacga 1860 ggtgtcaaag ctaccaaaga gcaaaattcc tacaagccaa tctttcaaaa atctacaggc 1920 atttgtacaa gatccactca ttgttgccaa acttgagttc tttattagta tcgcacgcat 1980 tcttgggcct tttttgaaga aattccaaac cgatcagccc atggtcccct ttcttacaca 2040 agatgtacaa accatacttg aagcaatcct ttccaagttt gttaagaagt ctgtgcttca 2100 agaggcaaca acatgtgcta agcttgctaa cattgatgtt agcaagtctg acaatcttct 2160 accaccaagg aaggtagatg taggttttgc tgcgaagatg tcagtgcata agatggaaag 2220 tactaagcaa gccacacctc tacaaatcct ggaattccag aataattgcc ttgaatttct 2280 gaaacaatta tctagcaagg taatggacag atctcctcta aagtacaaga tggctaggaa 2340 tctggtgtct ttaaatccta tttacatggc atcaaaccct gaagcagcaa caaccagatt 2400 ctccaatgtc cttcagcaac tgatatcgca taaaatgaaa tctacccatt gttgtgatat 2460 tgctctacag cagtacaagg cattccttgc tgatgtggag agatacagta aggaggactt 2520 caagtcctac cagtcatcag acaaagcact tgatgtcttc ctagcagagt actttcacca 2580 gaaaccacag tatgcagacc tttggcaaac agtaaagatg ctgcttatct tgtcccatgg 2640 tcaatcctgt gttgaaagag gattctctga taacaaggat atcgtgagca acaatatgca 2700 ccaagacacg cttgttggat ttcgcagagc tcacagtggt gtcaaaagtc tggaatgtcc 2760 aattgaagat tctatcacaa ctgagctgct tacatcttgt aaatatgcta gtaacagata 2820 cagacaatct ttagcagaga agaaatcaat tgaggcaaaa acccataaag aaagcttgaa 2880 aagaaaagtc gaagaagaca tcaagcaagc aaaaaagaaa aaacaaaagc ttgaaactac 2940 agctactgct cttctgaaag aagccgatga ccttgctact aatgcagaaa tgaagggaga 3000 ctttagcatt cttgcaaagt cgaacgcctt gcgggtaaaa tcaaaagaaa agaggaagga 3060 aatagagaag gaagaacaaa atattgatct tctacagaag aagctgaaat ccttttgaaa 3120 agacgttaag tcaaaatctc acaatcttga gacactattg ctttgttgct gttattgaaa 3180 ttatagatta ttcattaaaa gtattcataa gacatgctgc atggtcattg aaaaatgggt 3240 tatggtcagg gaaaagtcag ggaaaagtca gggaatttta ctttttcaga ttagtgggaa 3300 ccctg 3305 // ID DIRS-18_NV repbase; DNA; NEM; 3312 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-18_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3312 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3312 RA Kapitonov V.V. and Jurka J.; RT "DIRS-18_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 412-412 (2007). XX DR [2] (Consensus) XX SQ Sequence 3312 BP; 1039 A; 665 C; 710 G; 898 T; 0 other; acgctcaagt gtgacatcaa gctgcaacgc atccagtcca acttgctgaa gggcaatatt 60 cctattgttt caatggttga aaagctagtt caacttcaag atacaacgtc agcagaaggg 120 ctagatattg atagccttat cacaatggcc acatactctg cagccttgct tggagcagcc 180 aattttggac tgaacatgca gtgacaagat aacatcaaac cagagctcaa tgctgattac 240 aagcatttgt gctcatcaac ggttctattc tttgaattcc tattgggaga tgatccagac 300 ctgtccaaac agctaaagga cttggctgaa gctactaaag tcagcaggag aataagcagg 360 aatgaatcaa ggcaatagac ctacagtaac agtaaggtca caaaaggttc aacttttaac 420 actcaaaagg agggtttggc tacaagcacg caggtgccaa cacaagcaac aatttaaacc 480 tcaaacggcc cagctaccca gcttgaaaaa aggaggaggg gaggaagcaa aaatagggcc 540 acagaccccc ttaataccag cttctgaggt aagcaatgct aataacacat ttaatgcagg 600 cagattggaa gagtttgtcc ctgcatggca ttaaattacc tcagagatgc tggattaggt 660 tgagcattgc catcttgagt ttcttgataa cataaaacct gttcagactg gtggtcacag 720 tgaccaggtt taacccccct gaactccact atcatagatg gggaaattga caaactccct 780 gatcaagggg tagtggagca gtgctcccat gagaaaggag aatttttatc tccaatattt 840 tttagactaa aagagaatgg ggttgactat cgaatgatac tcaaccttaa agagctgaac 900 aggtttattg catacgagct ctttaagatg gagtcgttga atttggtaat agagcttatg 960 actcaaggct gttttatggc atcggcagat atcaaagatg cctattacac agttccagtt 1020 gccaagaaac accacaaata tttgagattt atgtggaggg gcaaactcta tcaatatgtt 1080 tgcttgccga atggtctaag ctcagcccct tggatattta caaaactgct gaaacctatt 1140 ttcaaagtcc ttaggcaaaa aggttttctg tcctcatctt atatttgatg atgtttaggg 1200 aattcacacc aggaatgtca tgacaatgca gtcaacacag tgcaattgct caggggcatg 1260 gggtttatta tccaggagga aaaatcaaaa ttgatatctt cccagcagtt aacatttgta 1320 ggctttgact gtaaaacttg ctacaactag aattgcaaaa gtagtaaatg catgtcaaaa 1380 gcttatcaac aagcccgagt gcacagtttt aagcctggca gaagttatag gcctgatggt 1440 ttccagtttg gggtagaata tggaccctta aatttatatg tggataaaac tgagtcctta 1500 agaactcaca agggggactt ttcagccctt atatccctgt ctgcagactc taaagaggag 1560 ttgcagtggt gggttgatca tctacctaca gcttataagg ttatttccca tggtgaccct 1620 gatcttatta tacagaccga tgcatcttcc caggggtggg caggtgtata ggataaagag 1680 aaagcagggg gaaggtggac ccccagtgaa gcttctcacc atattaacta tttggaatta 1740 ttggctatat tgttgtcact gaaagcatta tgtggtacat gtccttaaac tcgtatccag 1800 gtccagtgtg acaacaccac tttagtttgt tacataaata atatgggcgg atctcgatcc 1860 ataccctgta ataccgtgac aaaacaaatt tgggccctct gccaaactca ggacatatgg 1920 ttgagtgcaa cacatttgcc aggttgtgaa aatgttgcag ccgacgtaga atccagacag 1980 tttaatgatc gcaccgagtg aaagcctaat ccactggtct tcaataagat tgtcataaat 2040 tatggtaatc ctgaaattga cctatttgca tccccactga atacacaatg tctgaaatac 2100 gcctcatggc gtccagaccc tgaaggtcta tttgtcgatg ctttttcagt tgattggagt 2160 aacctctttt tctaagcatt tcctcctttc agcctgattg ggagatgtct agagaaagtt 2220 tatgtgagca aagcagaggg aattctagtt gtccctctat ggacaagtca aagttggtac 2280 ccgaaattat tgagattgct ggtggagtct ccactagtga tacagcccag gaaaaacctt 2340 ctgatgctac caggaacaca tcaactacac cctctgagag agaaactaag tctattagca 2400 tgtcacttat gtggaaagtt tacaaagaca gaggcatttc taatgaagca accaatatta 2460 tcctacaatc ctggagacag tcatctcaga accaatatga cacacatcag aaattgggtt 2520 atattctatt ctgaaaagaa ggttgacccg attaaagcca atatattgtg atgcccttga 2580 ctttctaaca ggcatgtacg taaagggatt gggttatggc agcattaatt cagctcgctc 2640 ttccctctca gctatcctat acatgcaagg gacatgtctg tttggtgagc atcctgatga 2700 aaaaggcttt atgaagaccc cctatgccaa gatacaataa aatatgggat gtcaacgtag 2760 tactccagtt catacgtgat atggaagatt caaaggattt atcacttata gacttaacat 2820 taaagctgtc gtgcttacag cacttacaac agcaagcagg gcacagtctg tgcacctact 2880 agacattaaa ggaatggtta aagaagataa ctgttacatg tttatgctgg atagcaatgt 2940 taagcagagt aagcctacaa gttcacttac agacctcata gtaaagttaa aggcttatcc 3000 agcagacaca aaattgtgtg ttttcaatac atgttctgtt tacattgaaa aacaagtctg 3060 ttacgaggcg aagaaacaag gttatttgtt acctatcaga agccctataa gagggccagt 3120 agagatagca ttagaaggtg gatccagtct atgaccctag ctggagtgga tatttctatc 3180 tataaaccac acagtgtaag ggctgcagca gcatccaaag ccaataatgc aactgttgat 3240 gagatcatga aaactgctgg ctggtatttg gcagccatat ttgccaggtt ctatgataag 3300 aatctagaca ct 3312 // ID CR1-20_NV repbase; DNA; NEM; 3962 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 30-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone CR1-20_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; NVREP487; KW CR1-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3962 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3962 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 717-717 (2009). XX DR [2] (Consensus) XX CC This family can be still active (S>99%). XX FH Key Location/Qualifiers FT CDS 19..3465 FT /product="CR1-20_NV_1p" FT /note="endonuclease and reverse transcriptase." FT /translation="MAANFLTPVFIAFLAILFNQKLHYSPNLTSGINGFGL FT NCILANSESILTGLEAFYSHNIRANKMNVGRSSSEHKHLLLCLLLLGGDIQ FT LNPGPKWKFPCGSCNKPVKSNQKGIQCDNCNLWYHTRCCSINDDLYYTLAA FT SSCTWLCVSCGFPSFSSSLFESSSIELQNSFSSLDSLHQDTQNISSSTIRS FT PETSPLDSSSRNSSNTRKQSKEKLTGMILNCNGLKGTDHITKFQALINLHD FT PDFILGTESKLCPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTE FT EPDFEVDNCEIIWTSLKLANRKSIYMSSYYRPPNQPSDSIDNLNESIRRVF FT NKVKNFPNIIIGGDFNLGDIEWNSSVPTPTNPATASLHQKFLQTIDDFSLS FT QHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR FT SLKPPHKVYQYKKANFPDLCKFMSDSSTTFFSTNPEKRTVEENWVLFKTSL FT STGISQFIPQKSSRPKYKLPWINTNIKREMRKKDRMHKKAIKSKNQQHWEA FT FKRQRNLVSKLIKDSHNDYLNNIIGNSLKDNPKKFWSYVRSSKSESIGIPP FT LKNNDSSVSVTDAHKAETLNTFFHSVFTQEQLPTPVLGNSPYSSIPDLHIS FT AEGVCKQLSELNPKKACGPDEIPANVLKEVSQSISHWLAFIFQQSFDCNKI FT PSDWSNALITAIHKKGLKSEPANYRPISLTSICCKIMEHIILSHMAKHLSS FT HNILINQQHGFREKFSCETQLISAIHDWAKTINFRGQTDVLLLDFSKAFDS FT VPHQRLLIKLDFYGIRGNMLNWIKAFVSNRKQSVSVNGTVSSSKSVVSGVP FT QGSVLGPVLFLLFINDISTSIQSNLRLFADDCVLYREVASLQDCQALQQDL FT DRLSVWSKTWQLKFNVSKCYHLGITRKKIPVKFTYSMDGKCITQASSTPYL FT GVTIADNLSWNEHCDNICKKANSTLGLLKRILSGCSPEVKDSAYRTLVRPK FT LEYATSAWNPYTQCNINKIEMIQRRAARFVFNDYSRYSSVSPMINSLGWES FT LEQRRQLNQAHMFYKIYNGLVGISFPPEVTPITRVSRQPNCAPFHQLVTLN FT DTYKYSFYPRTIRTWNSINLSTIPDSLAKFKDSLLLKVQTN" XX SQ Sequence 3962 BP; 1264 A; 815 C; 623 G; 1260 T; 0 other; ggtcagcggt cgaccaagat ggcggccaat ttcctcactc ctgtctttat agcttttctt 60 gcaattttat tcaaccaaaa gttgcactat tcaccaaatt tgacttcagg gataaatgga 120 tttggtctga actgcatcct ggcgaacagt gagtcgatat taactggtct tgaagccttt 180 tacagccaca atatacgagc aaataagatg aacgtcggcc gaagctcaag tgaacacaaa 240 catctcttgc tttgcttact tctcttaggt ggcgatattc aattaaaccc gggtcccaag 300 tggaaatttc catgtggctc ttgcaacaaa ccagttaaaa gcaaccaaaa gggtattcag 360 tgtgacaatt gtaacttatg gtatcacaca agatgctgtt ccatcaatga tgatttatac 420 tataccctcg cagcttcgtc ttgtacgtgg ttatgtgtgt cttgtggctt tccaagtttc 480 tcaagctcac tatttgaatc atcctccatc gagctacaaa attcattttc ttcattagac 540 tcattgcatc aagatacaca gaatattagt agctctacta ttagatcacc tgaaactagc 600 ccgctcgact ccagctcaag aaattcaagt aatacaagaa agcagtcaaa ggaaaaacta 660 actggcatga ttcttaattg taacggtctt aagggaactg atcatattac taaattccaa 720 gctctcataa acttacatga tcctgacttt atccttggaa ctgaatcgaa gctgtgccct 780 gatatttcaa cttactccat cttctctcag aactattcag tttttcgaag ggacagaaat 840 aaatttggag gcggtgtctt tcaagccata aaatcagatc tagtttgtac cgaagagcca 900 gattttgaag ttgataactg tgaaatcatt tggacctccc tcaagctagc aaaccgtaaa 960 tcaatatata tgtcatctta ttataggcca ccaaaccaac cttctgattc tatcgataat 1020 ctgaatgaat ctataagacg agtcttcaac aaagttaaaa atttcccaaa catcataatt 1080 ggaggagatt ttaatcttgg agacattgaa tggaactcaa gtgtcccaac tccaacaaat 1140 ccagctacag cttccttaca tcaaaagttc cttcaaacca ttgatgattt ttctctctcg 1200 caacatgtca aaactaccac aagaccatca tctggtaaga ctttggacct gttattaact 1260 acctacccga atgttattgt taatacctct actgcttctg gcttaagtga tcatcttgct 1320 gtcatctttg aggttaactt aaagccttct agatcactaa aacctcctca caaggtttat 1380 caatacaaga aagccaactt tcctgatctg tgtaaattta tgtcagactc atcaactaca 1440 ttcttctcga caaatccaga aaagagaaca gttgaagaaa actgggtcct gtttaaaacc 1500 tcattgtcta ctgggatatc tcagtttatt ccacaaaaat cttcacgccc aaaatataaa 1560 ttaccatgga ttaataccaa catcaaaaga gaaatgcgca agaaagatcg tatgcataaa 1620 aaagccatta agtccaaaaa tcaacaacac tgggaggctt tcaagcgtca gcgtaatctg 1680 gtttcaaagc tcatcaaaga ctcccataat gattatctta ataacatcat aggcaatagc 1740 ttaaaagata atcccaaaaa gttttggtct tatgtaagga gtagcaaatc agagtctatt 1800 ggcatcccgc ctttaaagaa caatgattcc tctgtttctg tgacagacgc acataaagct 1860 gaaactctta atactttttt ccattcagta tttacacaag aacaactacc aacacctgtt 1920 cttggaaatt caccatattc atcaattcca gatcttcaca tttctgctga aggagtctgt 1980 aagcaattat ctgaattaaa tcccaagaag gcatgcgggc ccgacgaaat tcctgcaaat 2040 gttctgaaag aagtttccca atcaatatca cattggctag cattcatttt tcaacaatct 2100 ttcgactgca acaagattcc atctgattgg tcaaatgctt taatcacagc gattcacaag 2160 aagggtttga aatctgagcc agccaattat cgacccattt cattaacttc tatttgctgt 2220 aaaataatgg aacacatcat tctcagccat atggccaaac acttgtcatc tcataatatc 2280 cttatcaacc aacaacatgg atttagggaa aaattttcct gtgaaactca actaatctct 2340 gcaattcatg actgggcaaa aactattaat tttcgtggcc aaactgatgt tttattatta 2400 gacttctcaa aggcctttga ttccgtcccg caccaacgac tgctcattaa acttgatttt 2460 tatggaatca gaggtaatat gctcaattgg atcaaagcat ttgtatcaaa ccgcaaacaa 2520 agtgtttcag tcaatggtac tgtttcttca tccaagtctg tagtgtctgg cgtgcctcag 2580 ggctctgttt tgggcccagt gttattccta ttgtttatta atgacatttc aacatctata 2640 caatctaacc ttcgtctatt cgcagacgac tgtgtattat atagagaggt agcttcatta 2700 caggactgtc aagctttaca acaagacctc gatcgtttat ctgtgtggtc aaaaacttgg 2760 caacttaaat tcaatgtttc taaatgttat catttaggaa ttactcgaaa gaaaatacct 2820 gttaagttta cttactccat ggatggaaaa tgtataaccc aagcatcttc taccccctac 2880 ttaggagtaa ccatcgctga taatctatca tggaacgaac actgtgataa catctgcaaa 2940 aaggcaaatt ctacccttgg ccttttgaaa cgcattctat ctggttgttc tcctgaagta 3000 aaggactctg cctatagaac acttgttcgt cctaaattag aatatgccac cagtgcatgg 3060 aatccatata cacaatgtaa tataaacaag attgagatga ttcaacgacg tgcagcaaga 3120 tttgttttca atgattactc acgctatagt agtgtttctc ctatgatcaa ctcactagga 3180 tgggaatcct tggaacaacg taggcaatta aatcaagcac atatgttcta taaaatctac 3240 aatggccttg ttggtatatc ttttccaccc gaagtaacac ctatcacaag agtctcaaga 3300 caacccaact gcgcgccctt ccatcaactt gtaacattga atgacactta taaatattca 3360 ttttacccaa gaactataag aacttggaac agtataaatt tatctacaat cccagattcg 3420 ttagctaagt tcaaggacag tttattatta aaagtccaaa ccaattaata atacctattg 3480 atatatatat gcatgaaaag atatatttat ttttatttaa catttacatt aacaattaac 3540 atatttttta ctagtttctg atctttaggg tgcatgccat ggatgcatgg agcggctgcc 3600 aaactagcgg gagttggctc aagggtgagg caaagattct ttgtttcgcg cttgggttga 3660 ttcttgttgg ttggctgttt catgcattta tggcattcac tctattgatg ataattttaa 3720 tttcatgtat atataattaa ttatttaatt ttatcaaata tctaatttca ataattttca 3780 agtaatatat atttatgctt cattttcaat ttaacctaaa ttatttttcc gatggccgat 3840 aattattatt attatatttt tcttttgtat ttacatattg tattttcttt ttcaactcct 3900 agtatagtct taactgtttt ttaggagtat aactattaaa gattaaagat taaagattaa 3960 ag 3962 // ID RTE-1_NV repbase; DNA; NEM; 4159 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone RTE-1_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4159 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4159 RA Kapitonov V.V. and Jurka J.; RT "RTE-1_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 655-655 (2007). XX DR [2] (Consensus) XX SQ Sequence 4159 BP; 1180 A; 1057 C; 991 G; 931 T; 0 other; ggtgcatagg gtgactattc ctcacggctc tggtcatcta attcctgggt aactaccttc 60 acgtggtgca cctgtcttag acaaaatgtt atcctaggga ccgagcgagg gacggtatat 120 tccctctcgg gtaggtggag ctcttcagcc ttggtcggca gtccacctag gggaaggaaa 180 accctgattt caaacctccg ctgccttgcg gccataccct gtcagggaaa ggcactcaat 240 tgagtcaaag gcacaaaggc actcaattga gtctcctggg taggtggagc tcattagcct 300 tggtcggcag tccacctagg ggaaggaaaa ccctgatttc aaacctccgc tgccttgcgg 360 ccataccctg ttatgggaaa ggctctcaaa aagtctggac accggcaaac cccccgatag 420 atactacttg ttctatgggg aagacggcgg cttcagcaaa gcacccgtgg agtgttaagg 480 gcaagtgaag tcatccatgg tttatcttgg ccatccactg catctggttc tgtcttccag 540 tcgtctagac attgtcctgc cactggtcca tgatggctcc agacgagaga gtgaggtcga 600 cgatgcgcaa ctcttcttca cttaaatcaa aattcatagc gcaagtcatc tatcattttt 660 tttcacttca tcaccctaat ccaaagtcct gtggcgacag gcacgcaacg aagcgacagg 720 tgtgggtaca ctggaagtcg tagatgcaaa cctgcacata ggcggctcag gccatagggt 780 cgctattcac tgactggagc agcagtggat ctcggcagca gtctgagtga ctgagcagcc 840 ctatttagga acgcactgct cacctccatg gcaagaggag aggactagaa aaggtgtccc 900 aaacattgcc tgctccacct taccctatcc agtttaccgc gactggaggg ggccctattt 960 atgcggtcga aacaaaggaa gtaaactaaa agcaagattc acaccactaa ccgctgcagc 1020 ctggaacgtt cgcacactcc ttgacagagg tggctccgaa agacccgaga gacgcacagc 1080 acttgtcgca agcgaacttg gtagatacaa cattgacatc gctgctctta gtgaaaccag 1140 actagcggga gagggcatgc tatgcgagag aggtacagac tatactttct tctggagtgg 1200 acgcagcccg gtagagagaa gagaagcagg agtggggttt gctgttaagt cgtccattaa 1260 tgaccaaccc ggatgagata aaggacaagt tttacgaaga tctaaacaat gtcatcaaca 1320 ctgttcctca agcagacaag ctcattattc taggtgactt caacgcaaga gttgggtgcg 1380 acagttccat atgggaagga gtgattggga aacatggagt cggcaaatgc aacagcaatg 1440 gtcttctcct tctccaaaca tgtgcagagc acgagcttct aatcacaaac accatcttca 1500 aacttcccac ccgtaacaga acatcttgga tgcacccccg ctcaaagcac tggcatctga 1560 tagactattc catcgtgcgt aaaagagaca gacaggatgt tcgggtcaca aagaccatgt 1620 gtggcgctga ctgttggaca gaccaccgtc ttgttgtttc caaacttaat attcgtgtcc 1680 aaccaaagag aaggcctcag ggtgtaaaga agactaaacg tctgaatacc agcaagctga 1740 aagtcagtga gactaaaaac accttttctg atactctgaa acaacgcttg gattccactc 1800 tgctaaatgg ccaggacgtt gagactgcat gggcaggact ccgtgaattg gtttacaaca 1860 cggctttaga gtgcctcggg caaaaaatca gaaagcacaa agactggttt gatgataaca 1920 gcacggagat tgaacaactg ctagaggaaa agcgtcgtgc gtacaaagct catctcgttg 1980 acccatcgtc aatttcaaaa cttgatacac taagaaaagt acgaagcacc gtccaagcaa 2040 agctgcgtca gatgcaagat acctggctca gtaggaaagc tgatgagatc caggactatg 2100 ctgacagaaa cgacatgaaa aatttctaca acagcttaaa tgaaatctat ggtcctacta 2160 cctcaggctc actgtctcca cttctcagtg ctgatgggga aacactgatc tccgataaag 2220 ataaagtcct ggcgaggtgg gcagaacact ttgagagtgt cctaaataga ccctcggcaa 2280 taaatgacga agccatcaac agactacctc aagttcctgt cgacgaaacc atggacgttg 2340 taccaacatt cgtggaaatt cagaaagcag tcaaccttct atccagtggc aaagccccag 2400 ggtcagactc cataccagcg gaagtctaca aagagggagg tgcggctctg acggagaaac 2460 tttaccagct ttttcagctc atctggaatc acgaggcagt gcctcaggac tttaaggatg 2520 cctccattat acatctctac aaacgcaaag gaaaccgccg tatctgcgat aatcatcgag 2580 gaatctccct gctgtccatc gctggcaaaa ttctggccag agtcttactc aatcgtctca 2640 ttgtacatct cgagcaaggc ctcctacctg aaagtcaatg tggtttccgg aaggagcgcg 2700 ggacaactga catgatattt gctgcaaggc aacttcagga gaagtgtcaa gaacaaaatg 2760 tcgacctgta ttccacctac gtcgacctga caaaagcgtt tgatactgtc agtagagagg 2820 gcctctggaa aataatggcg aagtttggct gtcccagcaa attcataaac atcgtacgcc 2880 aattacatga cggcatgctt gcgagcgtcc aggacaacgg agagacctct cattctttcc 2940 ctgtctcaaa cggagttaag caaggatgcg tccttgcccc tactctattc agtctgatgt 3000 tctcagccat gctgactgac gcttttaaag atgatgaggt aggcatcggc atcaagtatc 3060 gtttcgatgg ctctgtgttc aatctcagga ggcttcaggc gaaatccaag atctcggctg 3120 atactgtaaa cgacctctta ttcgctgacg attgtgccct caatgctacc tctcaagcag 3180 acctgcaaca cagcgtagat ctgttttcta gtgcctgtaa caacttcggc ctcaaaataa 3240 acaccaaaaa gacggaggct atgcatcagc cagcgcctgg aaagccctac actgaaccta 3300 acatcatcat caatggtcaa aaactcaatg ctgttgacaa atttacctac cttggcagta 3360 ctctctccag aaacgttgtc ctcgatgacg aagttaccaa cagactcgcc atagcaagcg 3420 ccgcatttgg aaggcttcgt aagaacgttt ggaaaaggag agggataaga acagatacaa 3480 agatcaaagt gtatcgtgcc gttgtgctgc ctacgctact ttacgggtct gaaacctgga 3540 ctatctacaa gcgccatgcg atgaagctta accatttcca cactacctgt ctgaggaaaa 3600 ttctcaatgt tcgctggcaa gaaaagatcc cggatactga ggtccttgca cgtgcaggtc 3660 tgcccagcat tcacaccatc ctgaaacagt ctcagcttcg ctgggcgggg cacgtagctc 3720 gtatgcctga tgaacggctt cctaagaaac ttctgtttgg tgagcttcag cacggaaaac 3780 gctgcaaagg tggccagaag aagagattta aagacaccct aaaactctcg ctgaaagcat 3840 tcaacatcga tcacacctcg tgggagcttc tggcacaaaa ccgtcaaggt tggcgccgtg 3900 tcattcgcaa cggtgctgcg gcatgcgagg caaattggac agctgccgca gaggagcgta 3960 gagccgccag aaagtctcaa gatcccaaag ctgcaacaat accatgccct cagtgcccca 4020 ggcttttccg tgcacagatt ggccttatta gccatctgcg cacccacaag cgtccttagt 4080 cccgctcagg atgacggtga aaatgaaaaa ttgaacacga tggtcctcgt cgtagcgacg 4140 gacaaacaac acaacacac 4159 // ID Penelope-5_NV repbase; DNA; NEM; 3456 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-5_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-5_NV. XX NM Penelope-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3456 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3456 RA Kapitonov V.V. and Jurka J.; RT "Penelope-5_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 635-635 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 38..3079 FT /product="Penelope-5_NV_1p" FT /note="Contains the RT and GIY-YIG nuclease FT domains." FT /translation="MGIDINAYRVHIGSFPGRHMARSKPKNISTRQRSPTN FT LKCTLHNRPAIFMLFVLPILIAKSMDIETNPGPVTNMFMDSSDPQPLTDNL FT IYPLTPLFNKTKKIQLKLVRFQHHLINFTFYRVHNLLPQPILPRPPIRSHD FT RNFNRQWYFISRNAATKHLKLLTRECNRKIAASSQELLHHRTLLERSCTNN FT AYIFYCRKLDSMALSLKSLLENRRNNKYSRRNLPNPDNDNTSTITPQAAPN FT TNPPPVATPAPQRRRRRRRRRRKNNSVVTLDSTSVINISSTSLSPDETSVL FT ARGLTFCPTPRKIDWSQVNADIYDFNRRMRLAEYFFNEDKPNDNDTLSFDS FT SFNPFRNKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNA FT LTQLNQRQDIIIKPADKGSGTVVMDKDWYINECNRQLNDTKFYTQLDADIT FT NDIQKRVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPG FT RPIISSNSHPTERISEFVDYYLQPLVSKLPSYVKDTNHFLNILLTLSNLPT FT DSLLVTLDVSSLYTNIPHNDGINACHHFLRTCNTNPIPAGTICDLIRMILQ FT MNNFSFNDKHYLQKHGTAMGTRMAPSFACLFLGLFETNALRDAPYKPHTWL FT RYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIKFTSSHSYNNVPFLDVNVSL FT VNSKIETDLYSKPTDKHQHLLFSSCHPHHTKKAIPYSLALRIRRICSTEES FT FNNRCNELTNYLLKRGYKPAFLKRQILRVANISRIDALRPNNNNHKNSRRI FT PFVTTYNPTLPNINNIIRRNYNLLLSSKRCHKVFTEPPLVAFRRSPNLRDI FT LVKAKLPSDRSPTNQPPGAFRCGKNCLTCPYIRTDGLTSYTFFSTGETRPI FT TSHITCNTKNVIYMIQCNRCNLQYIGETKRKLKERFNDHRRTVDSQSRSIP FT THAAEHFLKPNHSASDIELIPIEKIRNNRDSIRKAREATLIARAGTLEPGG FT LNRREETV" XX SQ Sequence 3456 BP; 1058 A; 1016 C; 484 G; 898 T; 0 other; cacattgaga tccggcttct gtttgcaaga cttcaacatg ggcatcgaca tcaatgccta 60 cagagtacac attggctcat tccctggtcg ccatatggcg cgctcgaaac ctaagaatat 120 ctccactcgc caacgcagtc caaccaactt gaaatgtacg ttacacaatc gtcccgccat 180 tttcatgctg ttcgtgttac caatccttat cgcaaaatcg atggatatag aaaccaaccc 240 tggacctgtc acaaacatgt tcatggactc aagtgaccct caacctttaa ctgataactt 300 gatttaccca ttaactccgc tattcaacaa gaccaaaaaa atccagctga aacttgtccg 360 cttccagcac cacctcatca acttcacctt ctatagagtg cacaaccttc tacctcaacc 420 cattctgccc cgaccaccaa taagatctca cgataggaac ttcaacagac aatggtactt 480 catctcacgc aatgccgcta ccaagcacct aaaattgtta acaagagagt gcaatagaaa 540 gatcgccgca tcatctcagg aactcctcca tcacagaaca ttattagaaa ggtcatgtac 600 taacaacgct tacatatttt actgtcgcaa actagattcc atggctctct cgcttaaatc 660 gctcttagaa aaccgccgca ataacaaata ttctcgccgt aatctcccta atcccgacaa 720 cgataatacg tctactatta ctccccaagc cgctcctaat actaacccac caccggttgc 780 gacaccagcc cctcagcgcc gacgccgccg tagacgaaga cgacgtaaaa acaactccgt 840 tgttactctt gacagcacat cggtaataaa catctccagc acttctctat cgcccgacga 900 aacttctgtt cttgctcgcg gccttacctt ttgccctaca ccacgcaaaa tcgactggtc 960 tcaagtcaac gctgatatat atgatttcaa tcgtaggatg cgactagctg aatatttctt 1020 taatgaagac aaacccaatg ataatgatac tctctctttt gacagctcat ttaacccttt 1080 ccgtaacaaa agcacttgga ctccctcctc aggcagggat aactcactcg acaccttcct 1140 taattctgtc aaactacaga tacaaaactc tacacttaac aagactcgct ctaacatcac 1200 acctggtgaa cgtaacgctt taacacaact caaccaaaga caagacatca taatcaaacc 1260 cgcagacaaa ggatccggca cagtcgtaat ggacaaagac tggtatatta atgaatgtaa 1320 tagacaactt aatgacacta aattctacac acaattagat gccgacatta ctaatgacat 1380 acaaaaacga gtcacaactt acatcaaccg aatgcacacg gacggaataa ttaatcagga 1440 cactaaatcc tacctcacac ccaaagactc taaacctgga cggttttaca tactccctaa 1500 aatacataaa catggtaatc ctggacgccc tattatttcc tctaactccc accccaccga 1560 acgcatctca gaatttgtag actactacct ccagccatta gtaagtaaac ttccatcata 1620 cgttaaagac actaaccact tcttaaacat tttattaaca ctcagcaacc taccaacaga 1680 ctctctcctg gtcacactcg acgtctctag cctctatact aatattccac ataatgatgg 1740 catcaacgct tgtcaccact tccttcgcac atgtaacact aaccccatcc ctgctggcac 1800 tatttgtgat ttaatccgca tgatcctcca aatgaacaac ttctccttta atgacaaaca 1860 ctacctccag aagcatggca ccgcaatggg cacacgcatg gcaccctctt tcgcctgtct 1920 ctttcttggt ctatttgaaa ccaacgcttt gcgtgacgcc ccttacaaac cccatacgtg 1980 gttaagatac atcgacgata tttttgttgt atggactgag ggtctagaca aattgaacgc 2040 ttttgtagat tatcttaaca atctacatcc caccattaaa tttacaagct cccactccta 2100 taacaatgta ccttttcttg acgttaatgt ctcccttgtt aatagtaaaa tcgaaactga 2160 cctctactcc aaacctactg acaaacacca acaccttctt ttttcatctt gccatcctca 2220 tcacaccaaa aaggccatcc cctatagcct cgccctccgt attcgccgca tttgttctac 2280 agaagaaagc tttaataacc gctgcaatga actcaccaac tacctcctca agcgtggcta 2340 taaacccgct tttctcaaga gacaaatcct acgcgttgct aacatttccc gcattgacgc 2400 cctacgccct aataataaca accacaaaaa ctcccgtcgc atcccctttg tcactaccta 2460 taaccctaca ctacctaaca tcaacaacat aatccgtaga aactacaacc ttctactctc 2520 gtctaagcga tgccataagg ttttcactga gccccctctt gtcgcctttc gccgctcacc 2580 taacctccgc gacatcctcg ttaaagccaa gctaccttcc gaccgctctc ccaccaacca 2640 acctcccggt gctttccgtt gcggaaaaaa ctgcctaacc tgcccctata ttagaaccga 2700 tggccttaca agctacacat ttttctcaac aggtgaaaca cgacctataa cctcccacat 2760 aacctgcaat actaaaaacg tgatttatat gattcaatgt aaccgctgta accttcaata 2820 tattggggaa actaaacgca aattaaaaga acgctttaat gaccaccgca gaactgtaga 2880 ctcccaatct cgatccatac caacccacgc cgctgaacac ttcctaaaac ctaaccactc 2940 cgcttctgac atagagctca tacctattga aaaaataaga aataaccgcg actccatccg 3000 caaagcaaga gaagccacac tgatagctcg cgctggcact cttgaacccg gtggcctcaa 3060 ccggcgtgaa gaaaccgttt agctacttag taatccacac caccctattt accatcttcc 3120 ataagtcact caattactat ttttaccttt tgttagttaa tcatcaatga actttgtact 3180 ttgtcactca attactattt ttaccttttg ttagttaatc atcaatgaac tttgtacata 3240 tactagctat aacatgccat tgtaactcat ttataacctg aagaaggcag gtattggcct 3300 gccgaaatat cgttctaaaa aacataaatc tgcgttgttg tcgacttttt cttttaaagg 3360 ttttattaat taatcaactg tcgacgcaga ccacaaggtc cgacgcacac cagcagatag 3420 aggctgtccg gtggtttctt cctacgtttt tgtaaa 3456 // ID SAT-3_NV repbase; DNA; NEM; 1501 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE SAT-3_NV non-autonomous DNA transposon - consensus. XX KW Satellite; Simple Repeat; SAT; NVREP193; SAT-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 400-1501 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 400-1501 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1501 RA Kapitonov V. and Jurka J.; RT "A family of SAT-3_NV satellite-like DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus. This 1501-bp sequence CC serves as a unit of satellite-like clasters. It is often CC interspersed together with SAT-1_NV. Originally, it was reported CC as the unclassified NVREP193 transposable element [1,2]. For CC instance, its copies are inserted in copies of Polinton-N1_NV and CC DNA-TTAA-4_NV. XX SQ Sequence 1501 BP; 472 A; 353 C; 273 G; 403 T; 0 other; tgacttgctt agactacggt cttaaactcc acggcccccg taacgcgaaa gcctttcgag 60 gattcaccca caattgatct aggtagccgg acttttttgt accagtccac ataccaatat 120 aaatttgcag acaagtcgag ggaatgcaaa aatcttcctg atacaaatat ctgtctattt 180 ttgcttccta tggtttaaca atagcgctac cacgcgaccg tgtcaccgac aataggcctt 240 ttgttttcga aacatagcct accttaaaat gacgcggatc gaaatagtgt aaaacgctag 300 atagccaatc accgactagt cacttcaatt aaagattcgt ccgacctctg atatataaac 360 gggcccgtga cttcatgtca caatccgcta atcgagcata ctttacgaag tcctcattag 420 caacctagcg aaaaacaact gacgaaggtc tcttcattaa gagtccgaaa ccggtcttgt 480 aaacgctata accgcccgcc gatttttcat caaacgatga catcggaagg caccttagac 540 gagatgagcg agccctctct cagaaaaagc cagatttagc caaagtgcac tttgaattct 600 acgagttaca gtggcgattc tcggcagcct caaatcttcc tgtttgattt taagaaatct 660 attaaaacag gagtgagctg tactgcagat atgtcctaaa taactctaag aaacttaaca 720 tgcacaaaga aagcgcttat gtcaggtcga gcaacgctcc tatagacgtg aaacattaaa 780 gaacgacaaa ttccaccaca aagacatata atatgtcacc taaggttttt gtcacctcat 840 aaaccacgtc tagcgtatat cgtcctccgt agatccattt ctgcggcata taacgctcaa 900 gcaaaagtgt aatctcaaag acactacgca ctttatttac ttcatcagaa gtctataaaa 960 gggcgaaaga ttcattgatt taaatatcct tgatgtccat agcttactga aacttttcag 1020 tacacgcatt ctctcctctt gccaccctct tagttataag aagggtttgt gtctagggag 1080 atggcctacg tccgttgaga acaaattcct cacttgccac cttctaagcc gaaatccgca 1140 acttattcta gatacggtta cgcgatttca caacatacat aacggcgagt gttgaattca 1200 cggacaggca aaatgcgttt tgaggcaaac atggcatcta ataaacgaat ctaaacattt 1260 tgtcatgagg ttccacccgg ctaaacagaa tcttctgaag attcttataa aaaactggca 1320 acttatcacg gatctcagcc tcatacggct agaatcttta atgaacctat agtctcttat 1380 agaaaggaga aaccgcttat agacttttaa gtcagagcca caatctccca taaaggacta 1440 ggtatcaaag cagatttatt tacaattgtg gcgggtgtgg ctgttggcaa tattacacaa 1500 c 1501 // ID Gypsy-23-I_NV repbase; DNA; NEM; 4298 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-23_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23-I_NV; KW Gypsy-23-LTR_NV; Gypsy-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4298 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4298 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-23_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 477-477 (2007). XX DR [2] (Consensus) XX SQ Sequence 4298 BP; 1262 A; 1150 C; 922 G; 964 T; 0 other; catggtgtca gaagccagga tttaaggcag agcaagcgga aacacaccgg aatacctggt 60 cggtatttta aactccgttt gttgtcaaaa tcgtcgaaat atggccgaac tcgctggtct 120 tccgagtcct cgcatggatt ggagttccac agacctccca caagccttca agaaattcag 180 agctacttgc gagctgtact tttccgggcc actgaaggaa aaatcagagc cggagaaagt 240 tagctatctt ctcatctgga cgggagacga aggaatcgag ttatcctcta cttgggctct 300 ctctgccgac gacagcaaga agctcgacac atactggaga aaattcgagg aatacgtctc 360 gccgaaaagc aactttcgct tagccagata caaactacga accctcaagc aacaaaaaga 420 ggaatcagtg gattcattcc taagaaaggt tagaatttta gtcaaagaat gcaaatacac 480 aaacactgat gaacaaatca ttgatgcttt gatctttgga tcagcaaatc caaaagtcca 540 atcaaagctg ctcgagcatg acaactcact aacactagac aaggctatcg atatagcacg 600 caccgctgaa gcaactcaag cgcagttggc agacataagg gcagagcacc cagtcacagc 660 agttaatgct atgaagcaat ctagtactca caaaaaaacc cagacccagt ctcacagtgc 720 agcatgtgga aattgtggta ctaagcatga tatgtcagca aggtctcttt gcccagctta 780 caattgtgaa tgtaattcat gtcacaagct ccaccactgg gaaagagtat gtaaatctaa 840 aagcaagccc caaccatcta aagtccaaca caaggggaaa cccaacaagg ggaaatttag 900 caagaaaatt cacaccattg atgaaagtga ttctcaagag ccccctgcat cccaattgta 960 ttacaactcg attgcaattg atagtattgt taagggcgaa acccaagcca tagtgaatct 1020 gcaaattgac tctggtcaag tcacgcaaca actgccatgc aagatagaca cgggtgctga 1080 gggaaacatc ctccccattg gttcatacac acagctacac ccagacacac cccgagacca 1140 ggacggtcga ccccaaggtt tgaaaccatc aaacaccaaa ataacagctt ttggtggaca 1200 cataatagaa cagtatggaa catgtttgtt atcattatca catggtgaca ttactaacaa 1260 gtgtgctttt catgtcgttg acacagaagg tcctatcata ctaggtctac cgacatgcag 1320 tgacatgaag ctagttactc taaaccatgg cattacagct aaaccagcct cagcggcaac 1380 agctccagca tctatggatc acccaacaga taagtcttca cttctcagtg agcacgccga 1440 atgttttaag ggcataggat gttttgaggg ggaatttcac attaccctag accctgctgt 1500 accacctgta gtccaccccc cgaggagggt ccctgaagct cttcaacaac ccctgaaaaa 1560 agagcttgac agtcttgaag cacaaggtat cattgccaag gtcactgaac caacagaatg 1620 ggtgaactct cttgtttgcg tcacaaaacc caatggaact cttaggctct gcttagaccc 1680 taaggactta aacaaggcca ttaagcgccc ccaccatcac acccctacca ttgacgaggt 1740 cctgtctaag cttaatggag cgcaatactt ctctattgtg gatgttcgta gtggttattg 1800 gaacattaag cttgaccttg agagctccct gtgtaccaca ttcaactcac cacatggcag 1860 ataccgtttc tgtcgactcc catttggttt aatttgtgct caggatgtct ttcagcgcaa 1920 ggttgacgag accttcggcg acctccctgg cgtgactgga atcgcagacg acatcatcat 1980 ctatggcaaa actcgtgccg agcacgacag taatctgaag gctgtcatgc agcgtgctca 2040 tgaaactggt atacggttta accctgacaa gtgcaaaatc gcttgcactg agctgtcatt 2100 cttcggacat gtcatcagct cctctggcct caaagtcgac ccaaagaaga ttgaagccat 2160 catcaacatg gacccctcta cgagcctgac agatctgcag accttcctag gaatggtgca 2220 gttcctcagt cgcttcattc ctaacctttc ctctgtttca gcagtgctct gggatctcac 2280 caagagcagc agtgatttcc agtggcacac agagcaccag gcagcagttg tacagatcaa 2340 gcagctcatc acctccccag gctccctcca gtacttcgac ggtcgtaagc ctgtgaccat 2400 acaggtagac gcgtcctctc gaggcctagg tgctactctt ctccaggaaa aaggcccagt 2460 ggagtaccgg agcaagctct tgactgagac tgaacagcgc tactcaaaca tcgagagaga 2520 aatgctagcc gttgtgcatg gcctcgagaa atttcactac tatgtatatg gcaggcatgt 2580 cacagtccag tctgaccaca agccactaga ggcaatcttt aagaaacata tctctagtgc 2640 accaccccgc atcgcacgaa tgatgctccg cattcagaaa tatgatgtaa acatcaagta 2700 cgtccctggg aaggagatac cattggccga cgcgctttca cgcctgaatc cttgtcctgc 2760 cgacaccatt cccgacctcg atgtctcagt acatgagctc catttgcatc tgaacgcaag 2820 tcccactaga gtgcgacaaa tccaggcaga gaccgcgaag gatccagccc taacctcact 2880 ccgatcgatc gtcagcaatg gttggcctga gaagagatca gagtgtccgc cccaccttca 2940 cggctattgg aactatcgtg atgagatcac agtctccgat ggtctgatcc tcaagggcac 3000 ccgcatcatt attccaaaga ccctacaggc tgacgtcctc aagcaactcc actacgccca 3060 ccaaggttct gaaaaatgca agctacgcgc aaagggctcc gtcttctgga caaacatcaa 3120 cacggacatc gaagacatgg tgaagagttg cgccccttgt cagagaaacg caaggatgaa 3180 caccaaagag ccattgacac cgcacgacgt gccgtccaag ccgtggcaca cccttggctc 3240 ggatttgttc ttctggaaca acgcatggta cttgctcgtc gcagattact acagcaagtt 3300 cccattggtc cgcaaactaa acgatgttag gtctgagacc gtcatcaagc acatgaagtc 3360 tatctttgaa gagaacggaa tccccgagaa gctgatcacc ggacacgaca cgcagtacac 3420 ttcatcgata tttggcgact tcagcaaaac atatggattt gaacacacgt ccacaagtcc 3480 ataccactcc caagctaatg gtttcatcga aaggaacgtg caaaccgtca agaatgtgct 3540 tcagaaatgc aaggagtcaa attctgatcc acacctagcc atgctgtgcc tccgcaccac 3600 accgatcgac cataatctgc cctcacctgc agaactcctg aatggccgag tctatcagtc 3660 taacctacct ggagtttcca gaacagctag gctggactca aaggtagacc atgatgccaa 3720 ctccaagcta caagccagac aggacttaca gaaactctac tatgacagat catcgaagga 3780 acttccacca cttccacccg gtagtaatgt gtcagtattc aacccacaca acaagaagtg 3840 ggaacccggc acggtacgca gtcagaggtc agctcccaag tcttatactg ttgagttgtc 3900 aacaggtagt aggttcacac ggaatcggaa acacctacgg ccatcagcgg tacctgctga 3960 gaagcctacc gatcatccag atattcctgt tgatggtgat acagcacagt caacatccag 4020 tgatggtccg agcctcgcag caggaaaggc tacagtagag cctcccatca tcgcaagccc 4080 ccagcctttg cgtcgctcag ctcgaaacat caagccgcct gacagactga gcttgtagaa 4140 cacttgatat gtttaagcaa gcatgatttc acaacactta ttttgtcttg ctactgtttg 4200 atacactgtt aactttggac attgctatac ctgattagca ttatcagttt agagacactg 4260 aacattgatt gtaatagttt acttaggaaa aaggggga 4298 // ID DNA-TA-19_NV repbase; DNA; NEM; 300 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-19_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-300 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-300 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-300 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-19_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 300 BP; 72 A; 77 C; 71 G; 80 T; 0 other; caatccgcgc caaaactctt gatacctcta cacctatttt tggaccaatt agaataccaa 60 atagcattac aaaacacccc ctctgtcctt gatataatca cccctccccc cctggtccaa 120 tgttggtccg atagcaggat gtccactctc taacatggcc cacttggaat ctcaacattg 180 gaccgggggg gggggagggg gggggtctcg tatgttgacg gggtcttggc cggccggata 240 caaatttttt acttcgtttg gcaaatttca aaaggtatca agtagttttg gcgcggattg 300 // ID piggyBac-N2_NV repbase; DNA; NEM; 899 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-N2_NV non-autonomous DNA transposon DE - consensus. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; piggyBac-N2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-899 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-899 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-N2_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 644-644 (2007). XX DR [2] (Consensus) XX SQ Sequence 899 BP; 263 A; 171 C; 176 G; 289 T; 0 other; ccctattcag actggggggg gctctttaag ccccccctcc gggaaaattg ctataacttc 60 tgaaccatag aagctaagag gctaaaactt ggtgactttt cctaaaatct atctgcggac 120 gttttgatgc cattgacatg tcgaggagac gctccatgtt accatggcaa ccgttttttc 180 acacataggt ttcccaaaaa ctaaaaagta gtgaattttt tatattttgg tcctgtttct 240 cagatttaaa tgcctctttt gactttataa gtttgtttag gtgacaagtt tcacaacagc 300 gctagaattt ttttacctcg gatatttggg gggaggggtg ggtaaatttt gctctctcaa 360 agctgttgtt aaaaatgtca ctagatttac tagatgacac tttaaaagct aatattatgc 420 atttatcatt actatgagca gtaatacatg catgcaaata cttttttctg taataattac 480 agattttttt tcttttgcaa aaatcataag aatccaagat ggcggatcca agatggcgga 540 aattcttcca aaaaaaaatg attataaacg tttttatggc ctttttgcat tgtaaagccg 600 ttaaaaggtt gattttgaca tatctaaatg atgcaaaatg atttcaaccc gatatctgat 660 aatttaggca atatttgaaa gaatatctag acatcgtatt tatgacgtca ttgtgacgtc 720 ataattgatt cgaccacacc caaaataggg cgtgacgatt ctttgcatgc tggtgatcat 780 tgtctgtaag tttgatggtc atagcctaag cggttcatga aatacggagg ggggggccct 840 tttagccccc cccccccccc cagtcacaga cagctcaaaa tagcccagtc tgaataggg 899 // ID DNA-7-8_NV repbase; DNA; NEM; 1263 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-8_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1263 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1263 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1263 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1263 BP; 378 A; 276 C; 277 G; 331 T; 1 other; caagggagca cggcagaatg tgttcctatt taacgcgcga ttgatattat tacgaaaata 60 aaccactttg ttatgcaaca cctcatgtgt gtttgttttg taagggagtc atcagttgcg 120 ctgttggggg tgtggggctc gcattatgaa gtggatatgt ttgtcaacag ggtctttgtt 180 cgtttcatcg gttacagacc gcccgaagat atcggatacg cgtagtgtcg gcacgaagtg 240 ccgacgaaag atgcacaaag tgcatcgcga gcctcggaga ggcgagaaaa atagagggga 300 gtgaaactgt ggtgggcgtg atggctctaa gccaatcaga accgcagttt cggaggtgtg 360 tcttctccct atgcgtgtag tagtttcctt ggagatattt cgactgaaat tagagatcta 420 aagttaaccg tgacgagaaa cacgagtata taaatccatt acaaataacc tagccatgac 480 aagaaatcct ccgcgaagac ggaccaaagc aatttaaagg ataatttttc tcgcttcccc 540 tcctactctt cgtttcattg tgtcagggag agttagatct ggtattcgcc ccactgtcgc 600 tagactagga atagcgttgt ctgttcgtac gcactcgtcg caaaatactt ggtacgcttc 660 gtcaacgtca agttcatttc caggcaaaaa aggcaaatgt attcaatatt cttcaaggaa 720 ataaagctga ttattgaatt gccaaattgg aaaccaaaga aacaatgcag aacactcaaa 780 tagtgagcgc gtcgtaagaa aatcccacaa atacaacaaa gcttccagaa tgcgaaaaaa 840 aacatgctcg tgaaagttca aacgacctca gatagttaac agagtctatg gtattcgtgc 900 tgttgctgtt ttgatcgtta ygcagtgcgt taatcgtttg aatacagcgc gctagaagtt 960 tgaatagagc gtgcggatca ggttgcaatt tggcatagca acaactacac gcatcactac 1020 atacaagagt tacagtttca ctccccgtca cttctactgt aactctctat cctcggaaag 1080 gattcgggca ttatacgaac aaagaccctg ttgacaaaca taatccactt cataatccga 1140 gccctacacc cccaacagcg caactgatat ctccccttac aaaacaaaca cacatgacgc 1200 gtttattttc gtaataatat caatcgcgcg ttaaatagga atacattctg ccgtgctccc 1260 ttg 1263 // ID DNA-6-10_NV repbase; DNA; NEM; 2404 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-6-10_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP461; KW DNA-6-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1099-2404 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1099-2404 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2404 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 2404 BP; 782 A; 407 C; 411 G; 793 T; 11 other; aatcagtgag aatttccggc aattctactt ttggcawkta wttcattttt tgttsacgaa 60 aaaaaaggtt atttctaaat wtaaamttga tatttcctac ctttattcga ttgaaaatta 120 gaaatttaaa agaacttcma tttcacattt ggatgtagcc attttgaata tacccaccat 180 tacttgatat ttctgtttat tttcatcaac agaaaataag tcagggcgaa tttccggcaa 240 ttctactttt ggcawtwawt tcattttttg ttgacgaaaa aaggttattt ctaaatwtaa 300 acttgtcatt ttgacaatac atatgctttt tttaatactg tcaattttca ttttaaaatt 360 gatatttcct gcctcttcca tttcacattt ggatgcagcc attttgaata ttttatacca 420 ttttattata cgacatttct gtttattttc atcaacagta aattagtcat taagtcaatt 480 tctggcaatt caacgaacaa ggtttattta tttcaagctt ctattcattt cctccaatca 540 caggcgggct actggactat aacaactggg caactggatt acagcttgct accaaatgta 600 aacaaatggc gtaatgatat aatagcctac ttagtgaatt tttttttttt ttgcttgctt 660 tctaaggatg ggtttcgcca tactaagtgg tcaatacaaa cggcctttcc attttttctt 720 gagtttcaat ttcttttttt aggggggggg tcctccaaaa tggggatcag tgaaggcact 780 cagtccctct ctgttggctt gcccattgaa agtgaaaatg aaaataactc ttttaacatt 840 ataatgcaaa attcagtcaa gccaatggta atctaaatca cttatctgcc tttcacaatt 900 aaaacatttt cttattatct tttttgttct aggtgcgcaa ttttggagat ctgctagaaa 960 atgtcttgtg atcaaacaaa cagagttcct attcttgaac aagaaaaaag gcaaaggaaa 1020 gagcccaaag caaagtcagc ttctagagga gatccgaaag atggtctccg atgcctgcga 1080 tcagccctct cgtgaatcac tggcagcaaa ttcagaggcc gcaacaaggg aaatggcacg 1140 gcaaaaagta aaggagcttt tcaaatgctc catatgcttt tcaaccagct ctctgacagc 1200 tgcaagttgt cccagatgct acaagctcat cggatgtgtg ccttgcgcgg aaaagtgggg 1260 agaagctact agtaatggat ctagatgtcc gttttgtaga accagaagac agtactgcat 1320 agcactagtg gtgcgtggcc ccgcggacat tttgggtcat cccatattcc tcccctaatg 1380 agagatgaag atgaggaaga agaaagtgat gatgacctta ggcctattct gtgacatttc 1440 accattcttc tccaaacgtt cgttttgccc ttgacgatga ttacatgatt caataataca 1500 tattcttgga cgattgtgtc cacctgtgga gcagtcatgt cgtttgataa cttgattctt 1560 gcagaaaagc ctgatattcc tatccgaata gcctcgacta acttctggaa atgtttctgt 1620 cagtaattgc ttatttcttc gtaagactta ttttgtttaa caaggttttt atatcgcttc 1680 ttgattctcg ttcaagtatt ccgccatttt tttttttttt caagaaaaaa ggcgggaatc 1740 agtacaccgc aaatggtgat ggttatacta agtagcccgc ctatgattgg aggaaatgaa 1800 tagaagcttg aaatgaataa accttgttcg ttaaattgcc agaaaatgac ttaatgacca 1860 atttactgtt gatgaaaata aacagaaata tcgtataata aaatggtata aaaatattca 1920 aaatggctgc atccaaatgt gaaatggaag aggcagggaa tatcaatttt aaaatgaaaa 1980 ttgacagtat taaaaaaaga atatgtattt ctctatttca aagtcaaaat gacaagttta 2040 aatttagaaa taaccttttt tcgtcaacaa aaaatgaatt aaatgccaaa agtagaattg 2100 ccggaaattc gccctgactt attttctgtt gatgaaaata aacagaaata tcaaataatg 2160 gtgggtatat tcaaaatggc tacatccaaa tgtgaaattg aagttctttt aaatttctaa 2220 ttttcaatta aataaaggta ggaaatatca attttaaaat gaaaattgac aatatcgaaa 2280 aagcttagaa atttttctaa ttcaaagtca aaatgacaag ttaaaattta gaaataacct 2340 ttttttcgtc aacaaaaaat gaaataattg ccaaaagtag aattgccgga aattctcact 2400 gatt 2404 // ID DIRS-26_NV repbase; DNA; NEM; 3643 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-26_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3643 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3643 RA Kapitonov V.V. and Jurka J.; RT "DIRS-26_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 421-421 (2007). XX DR [2] (Consensus) XX SQ Sequence 3643 BP; 934 A; 816 C; 742 G; 1151 T; 0 other; aacgatccat gatttggcta atcgtggcca caattggcgt tattatgatg aaacattccg 60 tacgctgcgc caggtaaacc cctccctgtt cccatgggcc aatatccatt ccgaattgtg 120 gcttcggtca catgtttcgg taactaaacc tgccagtacc ggaagaattc caaacaaatc 180 acaccaggct atcccaaaag gtttctgtta ccgtttccac agtggcaagg catgttcggg 240 ttgcgacttc aagcatgcat gttatctctg cagtgctggt agccaccctg ccactaaatg 300 ttttcgtccc caacggcaac aaccgggagg acaatcggaa catgccaggc cccaatcttc 360 caaccccggt aaaaagtgaa cgttttttac atttactttc tgggtatgaa ccagccattt 420 ttgcttatct gtctaagggt ttcaattcag gtttttcctt gcattttgaa ggcacattag 480 aaccccttga atctcagaac ctgctttcgg cttctgaaca tcctgaaatt gttgatgcca 540 aggtcttcaa agagctggag gcccataggc ttgcaggtcc ctttgcaatc ccaccatttt 600 caccctttcg ggtatctccg ttgggggttg tacctaagaa aacacccggt gaatttaggc 660 ttatacatca tctttctttc cctaaaggga tttctatcaa tgatggcata atgccagcta 720 atacaagcgt ccgttatgcc actatcgagg acgcaattcg atttattcgg cataatggta 780 ccagctgtta tcttgctaag actgacataa agaatgcatt tcgcataatt cctatcgatc 840 ctaaggacta ccccttgttg ggttttaaat ggagagactc ttactattat gatcgatgca 900 tgcctatggg ttgttccagc tcctgtaaaa cgtttgaaac ctttagtacg gctgtggaat 960 ggatagctag gaacaaatta catatacatt caatcctcca ccttcttgat gactttttga 1020 tcatagcccc taccgaagat ctatgtaggg cgcaactaca actttttctg gacctatgta 1080 actatctggg tattcccata gcaccagaga aaacaatggg acctgccact actttgcagt 1140 ttgcgggtat tgaacttgat acccaaatgt tagtggctcg cctaccacaa gacaaaattg 1200 acaagtctat acagcttatt actagttttt tgcgcagaaa gaaggtgtcc ctccaggagt 1260 tacagtcgct aattggaatg ctaaatttcg catgttctgt tgtcatgcct ggcagggcct 1320 ttctgaggcg gctgatagat ctcactatta atgttagggc ccctcaccac aagatcagac 1380 tgaatataag tgccaaggag gacttaaaaa tttggctgtc ttttcttcag aatttcaatt 1440 gcaagtcatt tttccttgac gagcactggg tgagctcacc taaacttcgg ctctttactg 1500 atgctgcagg ctctctgggt tatggggcag tttttggtga cgaatggtgc tatgggcaat 1560 ggcccgatac atgggtagga aagaatatcg ctattctgga attctatccc attgtcctta 1620 gtgtacattt atgggggcat agaatgacca accagtgcat tttatttttt actgataacg 1680 aagcattggt ttacgtgatc aataaacaga gctgccggga taaatctcta atgttttttg 1740 tccgccactt ggtcgccctt tgtcttaaac ataatattct tttcagagca aagcatatac 1800 caggtgtgca taacatttta gcagattctt tatctcgtct ccagcttcag gttttcaaag 1860 acaaagcccc agcaaccatg cattccaacc cgacggaaat tccgttgtct ctgttgccac 1920 aacattgggg cccatagttg aaacactcat ggcttcaagc cttcagcaat catccatccc 1980 tacctataga cgggcttggc gtttatttaa ccagttcctc agcgctacct tccagaattg 2040 tgttgtacag ctgcccatat cgccaagtat ggtagctctt tttattgcat acttattcga 2100 tcatcactat gccccttcaa ctgttcacac ttatgtatct gcgctgggct attcacatcg 2160 tttatccaat cttcctgatc caactaaggt tttttatgtg atccagatac tcaaaggcta 2220 tagcaaaatt ggttttaaac ttgatactcg gctccccatc accttgccaa tactacaacg 2280 tttggttaca gcagctcctg ttatttgttc cacgaaattt gaatcatgtc tttttcaatc 2340 aatgtgctgt tttgcctttt atgctttctt acgagttggg gaaatgactc aatccagtca 2400 aactcagaat acaggaagtc tgttaacaat ttttcaacta tcccaactca aagaggagac 2460 cggtgtggtt aaagctctga aattgacttt tcataatttt aaacacagct acaatcagcg 2520 tcccttctcc ctgataattc agcgccagaa cagcccttgt ccagttaatt tactgctgca 2580 gtacttagtt ttgaggggta cacatgctgg ccccctattt ttggacagtt ttggtaatgc 2640 tgttactaga gataaattca ctaacttgct gtcacttgct ataagacatt caggtcttaa 2700 tccatcattt tataaagggc acagctttcg gattggagct gcatctcatg cagcagcgca 2760 agggttatct gatgcacaga tcaggattat gggacgctgg aaatctaatg cctttcagaa 2820 gtacatacgg gtcaatagcc ttgtgaatta gtacaatttt tttcctttta gaaccggtcg 2880 attgctgggg aatccattgg ttctcgaagg catatgatgt atactgtata caatccacta 2940 cttgcaaggg cgatagattg agtgtgtgca gtacatctca tatgtagcaa cttgcatagt 3000 agtgtatttc ttgcacatcc ttgagtttag gttgagctac aatccagaca aggcaactgc 3060 ttacaagggt agcagtttgc ttgaatccat ttaacttaaa ttgttctctt ttcttgcata 3120 gtactggcaa tcacttgcat gggcggtgtc tttgcggtac aattgctttg ttagtagctt 3180 gttcataagg gcgaaagtct gccgccttta tcaaattggc atttgctttt ctcctgtcac 3240 aatacaggaa acatttgcat gggctgtgtc cttgttgtgt tgtgattgga taattgacaa 3300 agcattttgt ttttgcttta agtagcaaca ctatgcgaag gtatgattgt agcttatatg 3360 tgctatcgtt ctcgagtgct gctttttccc ttgggtgggc tgcattgtgg attatcaccc 3420 accatgcatt tggcgttgtt tgccctcacc tttactgggc aatttttaga tttatcagag 3480 caaattatat attttgacaa attttattaa taaagcggct ttgggctaac agcccatagc 3540 cattatgatt caaacactgt cttgttttgt atccatgccc agtaaacaaa gcgcgggtta 3600 aagcagctct cgttctatgg aagctaagtg gggaaggcat aaa 3643 // ID DNA-5-13_NV repbase; DNA; NEM; 1247 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-13_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1247 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1247 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1247 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-13_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1247 BP; 326 A; 272 C; 254 G; 395 T; 0 other; cagtggcgga tctaggattt agaaaggggg ggtgactttt ttgacaggct gtctcgattt 60 tttttttcag attttaagga atatatattt catgttacaa aatcttctac aaaatttcga 120 gaatacattt attttccctg tttgtgaaaa tcacgttact tattgaagtt ttgaattagt 180 agagaaccaa aagcataaca gctcctctta ctacggactt tactggagga acacttagaa 240 aagaagataa cgccatccgc catggttgcg ctgcaataaa acgcctacag acctccattc 300 tgtcgatcga cactattacg tatcctatcg tgcaacccag caaattttgc aaaaatcttc 360 cagtttgcgc tttctatttt cgggtgcaag tgcatcaatc acaacacaat tttaaaggaa 420 ttctgccggc gagttgtcaa aaaaaacttg aaaagctcat ggtaagaacc caacatattg 480 cgtgctatat tgcaggcggt ggcaaacgac tatattcagt gaataaaggt agcatccttg 540 ataatcggcg tctggtgctg acttagctat tcccacataa cctccttcga gctcatttat 600 gaactcatat gcctatgccc gcggcagttg gttaattaaa atctcatttt ttgccaggga 660 ttcttgtatc gctgttgcta aagctttgcc agtggggcat gttgataagt tcctcgcagc 720 ttcagtttgc ttatccactc tactatgtgc tagcatgaat tttccggttg cgctccgtct 780 agcaagtggt aggggggagg gctctccata aaagtagacg atagggtgat cgccctatct 840 tttagggcat tcaattcaac caactgctat aaaattctta cgcttttgct atccattagg 900 gggtctcacc ggtctcacag tgattttaga gcttaggatt agaaattgct tcgaccacac 960 ccaatgtgct atcttttagg gttaaaaaat gttgttgaaa agtgcttttc tgttccgcca 1020 gtcagaacat tctgattcaa aatgcatgcc ttgtttcgcc tagtgcagtg gcctggcttt 1080 ctgtcacgaa ctttgtctgg ttttcgtcca gtgaatagca tcgcgataca tccaattcgg 1140 ctataacaat ttgcaacgat ttatcttttt atgtttaaac gctttttttt ttcgcccaaa 1200 aggggggtga catgtcaccc ccgtcaccac ccctggatcc gccactg 1247 // ID DNA-9-34A_NV repbase; DNA; NEM; 103 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-34A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW DNA-9-34A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-103 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-103 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-103 RA Kapitonov V. and Jurka J.; RT "A subfamily of DNA-9-34_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 88-93% identical to the consensus. It forms a CC palindrome. XX SQ Sequence 103 BP; 20 A; 30 C; 30 G; 23 T; 0 other; caatctcgtt cccagagccc acgtaccttt gtgccagcgg caaggtacct tgcgtgtacc 60 ttgccgctgg cacaaaggta cgtgggctct gggaacgaga ttg 103 // ID Harbinger-N24_NV repbase; DNA; NEM; 648 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N24_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 3-bp TSD; KW NVREP566; Harbinger-N24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-648 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-648 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-648 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N21_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are ~92% identical to the consensus. It was reported CC originally as the unclassified NVREP566 DNA transposon [1,2]. XX SQ Sequence 648 BP; 212 A; 117 C; 132 G; 186 T; 1 other; aggcccgtct acacgagcaa tttttagttg acaattttat gtggcaattt ttatttgctc 60 gtgtagatga tcgacaaata tttgttgtca atttgcgtca gtaatgattt tgtacagcgg 120 agatacatac aaaataaagg ctagggtaca aagaaagatg gcgcccatga cacacgacga 180 atgagaagaa atgctgcagc aatagccgct gttatgatga tagaagaaaa aaaacgagaa 240 aatgttgggt gaaggcttgg aaaagtcgaa gagaagcaca gggattagcg actaatcttg 300 tttttaagaa tcacggcttt ccacaaattt tctaactctt tcctctaaca ataaggaaac 360 aagtttatct gtccatcctt tgtggaggcc gccatgttgg atgcgcaaat gctggagact 420 tgggtctact gaattcaaaa tatttgccac attttatgtg gcgtctcgtc cacacggaca 480 aattttgata tttracaatt tttatttgcc aaaaaaaagc aaacgtgttg gcttttcgac 540 aaatgcattt gccacataaa aatttgccaa atttgatcat ctacacgagc aaataaaaat 600 tgccacatac acatttgcca cataaaattt gctcgtgtag acgggcct 648 // ID Gypsy-19-LTR_NV repbase; DNA; NEM; 126 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-19_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19-I_NV; KW Gypsy-19-LTR_NV; Gypsy-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-126 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-126 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-19_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 468-468 (2007). XX DR [2] (Consensus) XX SQ Sequence 126 BP; 33 A; 18 C; 34 G; 41 T; 0 other; tgtagtgtcc gggctacctg tgttatgacc gggctacctg tgtaaggagt atattatagg 60 atgttcgttc gttgtaaagc agatggtcga gacatgtaat aaacagttgt gtttacaaat 120 gctata 126 // ID CR1-17_NV repbase; DNA; NEM; 3019 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-17_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3019 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3019 RA Kapitonov V.V. and Jurka J.; RT "CR1-17_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 394-394 (2007). XX DR [2] (Consensus) XX SQ Sequence 3019 BP; 941 A; 598 C; 539 G; 940 T; 1 other; ctgggtttct tattcaccat gttccgcgtg caggtgcacg tggaggtggg gttgcgctac 60 tacacaaaag tcaatttaaa ttaacaagat tgtcagtaga tgtgaactac acttcctttg 120 agttcactga ctgtatgata actcactcat caactaggct aaggatgatt gttgtgtaca 180 gacccccacc ttccaagaag aacagattca ctgtttctaa gtttttggat gagtttagct 240 cttttctgga aaacgtagcg actaccattt atcccctgat cattgctggt gactttaatt 300 tccatctaga taacagcaat gaccgttcag ctgctcgttt tcaagagctt atggacacct 360 ttaatctatc ccaacatgtc caacaaccaa cacacaaaaa tggacatacc ctagatctag 420 taataactag accggctgag acatctgtca gaaacgtaat ggtgactgac ccttcaaaat 480 ccgataactg tgcagtgcat tggacgtcac catgtcaggt gaagccttcc actgagagaa 540 aggaaatatc ataccggaaa ttaaaatccc ttgacaggga agcttttatg gaagatataa 600 tggtttctcc tttgttttgc aaggattaca ctaatacaga agaactttca aattgttata 660 ataacgtctt aacaaaattg ttgcataagc acgctccaat caaaacatgc acaatcacta 720 tcaggccagc ggctccgtgg tactgtgata atattcgtaa agaaaaagct aagcgcagga 780 aacttgaagc tctgtggcgg aaaactagac tggaggtgca taggcaaatg tataccgaac 840 aatgtgtaca tgtaaacaaa ttgttatatg actcaagaat gcagttttat gctggcataa 900 ttgatgaaaa ttccaccaac caacgcacat tgttttcaac aattcaaaaa ttgctaagtc 960 tcaatactgc caaaaaactt ccatctcata cctgtaaaag ggcattggca gacacattca 1020 taattttttt cacgaacaag gtacaagtaa taagggaagg ttttccaaca acagaaaccg 1080 ataacaatga acaaattcta aattttgaac aaacacaaag caactatgct atccctgaac 1140 ttaatgagtt ttctccaact acagtgcacg aactttcttc cttggtaagc aatatgatat 1200 ccaagtcgtg cagcttagat cccctgcctg gttccatttt aagggattgc caaggagtta 1260 ttcttcctct tattacaaat ataatcaacc tttctttttc tgaggcggtt gtaccactat 1320 ctttaaagga agctgtactt gatcccattc ttaagaagga caatttggac catgagatac 1380 aaaatcattt tcgacccatc tccaaccttc catttgtgtc gaaggcaatg gaaaaagttg 1440 ttgccattag actaaaccaa catcttgatt gcgggggctt gcatgagatc tatcagtcgg 1500 cctacaaaaa agggcacagt actgagacag cccttacgcg catacaaaat gacattctga 1560 gagccattga tgatgggcaa agtgtcattc ttgtattgct ggacttatca gcggcattcg 1620 atacagtgga tcatgatttg ctgattggaa gacttaaaca tcgctttaaa attaaaggtt 1680 tggcgctctc ctggttgagg tcatatctgt ctgacagatc tcagtttgtg aaaatcggaa 1740 atgaaagatc agaaagcaag aagcttgtct gtggtgtacc tcagggatca gttttaggtc 1800 cattgctata ttcgatgtac actgcacctc ttgcagacat aatcaggaaa catggactaa 1860 acttccattt ttatgctgac gacacgcaaa tctacatgtc gttcaatcct ctatctgata 1920 aagaacctgc tctgtcgcga cacttagttg aatcatgtat cgatgacatt aatagatgga 1980 tgacagccaa taagcttctt cttaatggtg ataagacgga acttctcgta cttcatgctc 2040 gtcatcgccc taaacctaat ctgagtttca tcaatgttgg gtctgatgtt gttgagattt 2100 ctgattccgc aaaaaacatt ggaacatggt ttgacagcga aatgtcaatg gacaaacaag 2160 taaagaacat atgcaaatca gctttttttc atctaagcaa tattgcaaaa ataagaaaat 2220 acatctcatt taaacactgc gagatacttc tccatgcatt tgtcacgtct aggctggact 2280 attgtaactc gcttctttca ggcctgaaac aagaacatgt ccgtaaactc caatctgtcc 2340 aaaactctgc agcacgcatt ctcactggtg tacgtaaatt tgaccatata acccctatct 2400 tacaggagct ccattggctg cctattcccg aaagaataaa tttcaaaata ctacttttaa 2460 ctttcaaatc tttaaatggc ctagctcctt cctatttaaa tgaattgctt acaccttatg 2520 ttccacgaag aagtctgcgc tctgaaaaga aagccttact ggtagagcct aggtgcaatc 2580 ttaaaactta tggctataaa tcattttcac accaatggtt aaaacccatc ttttcagaag 2640 tgctttttaa catgttttaa agaacctatc atttctagca ttatatatta atatatatat 2700 atatattttt tcccctatac taagttttct ttctattgaa ttgtttgctg tttttactat 2760 atttcttata tcaagtgtat tttgagatgc tatgagttag ttagttagtc taggctagct 2820 agttagttag ttagtyagtt agttagttag ttagttagtt agttagttag ttagtttgct 2880 aattagttag ttagtttagt ctaagttact aagttttaaa tactttatat aaaatattgt 2940 taccttaatt tttatattgt aaagcgccac tggattcata gtagaagtgg cgctataaaa 3000 atcgattatt attattatt 3019 // ID DNA-X-5_NV repbase; DNA; NEM; 250 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-X-5_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP386; KW DNA-X-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-250 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-250 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-250 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 77-93% identical to the consensus. It was reported CC originally as the unclassified NVREP386 DNA transposon [1,2]. XX SQ Sequence 250 BP; 68 A; 71 C; 58 G; 53 T; 0 other; cacccctctg taacagaccc ggcgaaaccc gacccgacgg aaattttcgg cctacccgac 60 gagcttttag cctccccggc acccggtgaa atttctaaat caacccgaac agtttctttc 120 ttacccgacg agtaagttga gtgaccggcg gtaaataaaa attagctgac ccggtggaaa 180 tttcaaaccc ggtgagttcc caaaaaaccg acgaaaatct aggtttcgcc gggtctgtta 240 cagaggggtg 250 // ID DNA-8_NV repbase; DNA; NEM; 272 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-8_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-272 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-272 RA Kapitonov V. and Jurka J.; RT "DNA-8_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 408-408 (2008). XX DR [2] (Consensus) XX CC DNA-8_NV contains 12-bp TIRs; it appears that this transposon is CC not flanked CC by target site duplications. XX SQ Sequence 272 BP; 90 A; 52 C; 48 G; 82 T; 0 other; catatcaaga aaatttagcc aaaaattgtc gtttttgcca aacgcggtca cttccatata 60 aggaaactaa tatattcctt atttggaaaa actgcatgat tcttgtcatt tttaaggttg 120 ccgtaccgca ggtgcttcgt aaactttatg acttgtaatc agaagagaaa aacagtgact 180 gtgaccatct ttggtcaatg gagaaagtat ctgaaaagaa actaagattc ctcggtacca 240 gtccctcaaa acgacaacgt tttcttcata tg 272 // ID P-1_NV repbase; DNA; NEM; 1095 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone P-1_NV autonomous DNA transposon - consensus. XX KW P; DNA transposon; Transposable Element; P-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1095 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1095 RA Kapitonov V.V. and Jurka J.; RT "P-1_NV - a family of autonomous DNA transposons from the starlet RT sea anemone genome."; RL Repbase Reports 7(7), 627-627 (2007). XX DR [2] (Consensus) XX SQ Sequence 1095 BP; 316 A; 240 C; 264 G; 275 T; 0 other; actcttgaag atattcctca atcaaaacag caaggtaggc cgcaaggctg ctacttggct 60 gtagaggaca gtgacgtatg tgctgaatgc ggcaagttca cagctgtaaa gaaagggaaa 120 gaaaaccaac cccgaagcct gcatgctcca gttttaaaaa ctaaccctga acgcataaag 180 ttaactctgc aagcacagag aatcaaatgt gcgcagcttg agaaagagtt gggaaagatg 240 agagcagagc ttgaaagatc aagcatgcaa attgatgcga ctctcagtga tgactttctc 300 actatccttg acagtgcaga ccagaaaatg accccattta tgaaattgtt ctggcaggta 360 cagaagaaac tgttttcaaa aacaagtacc ggagtgcgtt atcacccaat gataataagg 420 ttctgtttat ctctggcggc caagagtcct tcgtgctatg aggaacttag gaacagtggg 480 gttcttgttc tactcagcca gaggagatta aaagattaca gaaatagaat aaaaccaaga 540 aggggttttc aagaggaggt aatcgaggtt ctcaaggctg agacatccag ctactttgat 600 gttcagcggt atgttatact tctcttcgat gagatgaaag tcatggcaaa ccttgttctc 660 gacaagacca caggtcttct tggtgaccct gacctgaact ttgctgcatt agagagacag 720 ggtgatatcg catcacatgc actttcattt ctggtacgag gagtctgtac ggaactgaag 780 tttggatttg cacactttgc aacaactggt attacagctt ctcagctgat gcccttgttc 840 tgggaggcag tgtgcatact ggagacttca tgtaacttgt gggtcatcgg ggccacttca 900 gacggcgcat ctccaaatag gaggttttac cgcctccaca aggggcttga tggagatgct 960 ggtggtgacg tgtgctaccg taccacaaat ctctatgccc cccaccgctt catatacttc 1020 tcggatgctc ctcacctcat caagactaca cggaactgcc ttaagagctc tggttcagga 1080 agctgtacaa gatac 1095 // ID Kolobok-N12_NV repbase; DNA; NEM; 720 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N2_NV; Kolobok-N12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-720 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 357-357 (2007). XX DR [1] (Consensus) XX CC Kolobok-N12_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N12_NV transposon CC is characterized by 18-bp TIRs (1 mismatch) and TTAA target site CC duplications. This family is composed of ~200 elements that are CC ~8% divergent from the consensus sequence. XX SQ Sequence 720 BP; 199 A; 133 C; 141 G; 247 T; 0 other; ggtcttggta aaggtaaatt tgacaccact gtttgttttt gtggtttttg caaaacctgt 60 atcaatagtt cttaaacttt atttttgcaa aaaaattttt ttccataaat cgcattctaa 120 gacggctaaa atgggccttt gctgtttccc gtgacctgtt gaccgtgaat tcacgccaaa 180 tctttgactt ttctagcgta ttattttgag gcgagaactc gagcttgtcg ggcgtaacct 240 cgcgacgggt tttaagatat cgccttcaaa ttttcgggat ctgatagata attatgccat 300 gtcataaagt gtgtgaggaa ttttcgattt tcgactgaag atcgctttta tagcactttt 360 cgtgtccaaa tttcgccaga aatgagagtt ccaactttga ttcgtgatat tttgttgaca 420 gtgtcaaata acaaaaagtc ctcacacact ttggtagatc atctatctgt cattgagatg 480 caattacgtg caagtgcatg cgcaataacg cgaaggtgca ttacgctcta gagtaaactc 540 cgtacttttg agtttgaggc ctcaaaactt aaacacggaa ttagctattg caaaaataaa 600 acttgcagga gataattcaa tcttttatct tttatttgat atatagtttg tacatgtagt 660 gaaaattgcg gcgcgacaat atttttttcc gcggacacgt cgtttacctt taccgagacc 720 // ID DNA-8-4_NV repbase; DNA; NEM; 147 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-8-4_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 8-bp TSD; KW NVREP121; DNA-8-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-147 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-147 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-147 RA Kapitonov V. and Jurka J.; RT "A family of DNA-8-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 85-99% identical to the consensus. It was reported CC originally as the unclassified NVREP121 transposable element CC [1,2]. XX SQ Sequence 147 BP; 21 A; 28 C; 35 G; 63 T; 0 other; gggtattcct tggtgttacg gagagctttg tttttggtgc tcaaggcctt tgtactctat 60 ttcattgtct cgttctaagg tctttgtttt tggcttttgt tccattgtgt ttttggtgct 120 ggtgctccgt aacaccaaga aactacc 147 // ID Gypsy-11-I_NV repbase; DNA; NEM; 4184 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-11_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11-I_NV; KW Gypsy-11-LTR_NV; Gypsy-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4184 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4184 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-11_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 453-453 (2007). XX DR [2] (Consensus) XX SQ Sequence 4184 BP; 1327 A; 844 C; 1015 G; 998 T; 0 other; tggtgtcaga agtcaagtaa aagtttaacg agaatcaagg taaagaatat cgagaaaaga 60 attgaaatta tggcagaagt agagtcgcac aggactcctg gtccactggt gctggatgcc 120 caagcctcag aaaattggag gaaatttatt atgcagttcg aaatttacct agtggcgaaa 180 ggaaaggatg agaaacctga caagttgaag gtgaacttgc tactcaattg tgctggagca 240 gatgcaattg aagaatatag tcattttgtt ttcaacgaag gagaaagcaa tgaatcttat 300 gaagatgtgt gtagaaagtt caaggaacac tgtcagggag caagaaacgt catctatgag 360 cgccttgtgt ttaatcaaag aaaccagaaa gaaggtgaga ggatggacaa tttcgtgagt 420 gagctgaaac gcttatcgtt gacatgtgag tttgggaccc tcagagattc actgatcaga 480 gatcgtattg tgggaggggt gctctcgaat gagttgagag gggagttgtt aaaaaagcca 540 gatttgacac tccaaagtgc ccatgattac tgtagaacct atgaagctgc tgagttgcag 600 aaattcaagt ttgcttcacc aactggttca cagcagccat tgagtgtaca cccagttcaa 660 ggaaaggaga gagcacctaa tcctacctgt aagttttgtg gttttcagca ccgtttcaca 720 aaaccaagta tttgtcctgc cttaagaaag aaatgtagaa attgccaaca agagggacac 780 tttgcaaagt tgtgtcctct taagggtaag aaagaaacac cggtcagcac agtagagcaa 840 gaaaaccagg ttgagagtat gggccaaggt gatcgtgggg gtgatccaca cttatacttt 900 ggatcagtag aacttgggac tgtgtccagc cccaatagca caaagaagag cgtgattacc 960 cttaggattg cacaaaaaga ggtaaaagtc aaagctgata caggtgcaga ggccaatgtg 1020 atgccatatc atgtatataa ggccatcact acacaaccgc tacgaaagat tcatcagcct 1080 cttaaaggat ggctcgcaga caaggcaatt catcctgttg gatgtgttcg ccttccaacc 1140 cagtacaaga accgaaaaat agatctgctg taccttgttg tgcatggaga gtttacaccc 1200 ctgttgagtt gtgaagcctg cctagactta gaggtgctca agtttatgaa tcttgacctg 1260 atagacacac cagaaagact ggccgaggag accacacaag ggaatggcaa caagccgaat 1320 gcagaattgt tggtagaaga tccggttcta tcgcagtacc aagattgttt tagtaaaaaa 1380 ccgggaagac tgccaaacaa ggtacaccta gagatagatc catcagtgcc tgcagtagtc 1440 caccccccta ggaagatccc catatccctg cttgaaccga caagagaaaa actccaagag 1500 atggaacaag atgggattat cgttaaagaa gaagagcaca caccgtgggt gtcttcaatg 1560 ttggttgttg acaaacgaaa agagaaggac agagccaacc caccatctaa agacagtgtc 1620 cgtatctgca tcgatcccag ggatctgaat aaggccctca agaggccaca ctaccccatg 1680 gtcactgttg agcaagttgc caatcgcctt tctggagcta caatgttcac cacactggat 1740 gcatgcagtg gatactggca ggtggaggta gatgaggaaa gctcgaaact tctgacattc 1800 aacacacctt ggggacggta tagatttaca cggctgccat ttggaatttc atctgctcct 1860 gagatatacc aacgagagat ggacaggctc ttcgctggag ttgcagttga aataattgtt 1920 gatgattttt taatccatgg aaaagatata agtgatgttg ataggaaggt gatagcagta 1980 cttgaaagaa gcagagaggt gggcctgaaa tttaatccaa agaagatcaa gcttcgagtt 2040 ccagaagtaa gctatgtcgg acatgtgttc acatccgagg gtttgaaacc agatcctgag 2100 aaagtgcgtg caattagtga gatgccaccc ccatcagaca aagatggcgt gcagcgattc 2160 ttaggaacaa tcaactactt ggacaagttc attgaacaca aagctgatct gcaaggccca 2220 atctcccagc tgacccagca agtagcagtt ttcacctggg agaagcctca acaagaggca 2280 ttcgagaagc ttaaagctgt gatcacccat gcaccagtgt tggcctattt tgacaatcac 2340 aaacagacca ttctgaatgt agatgcgagt agcactggcc ttggtgcagt catcatccaa 2400 gagggtaagc cgattgcctt tggttcaaag actttgtcgt cttgtgagca gagatatgct 2460 aacattgaaa gagagttgtt agctatacta tggggagcag acaagttcca cacgtatgta 2520 tatggcaggc gagtgattgt agaaactgat cacaaaccat tggaggcaat tttttaggaa 2580 gcccctaaat gaatgcccac cacgattgca gagaatgctt ctgaagctaa ccaagtatga 2640 tttggatgtg agatatgtcc caggcaagaa acaaatcatc tctgattgtt tgagtagagc 2700 cccactcact gacactacgc cagtaagtga accagaggat gtgattggaa tcaatctgat 2760 tgaaaatctg ggaattgaga attccacatt aaagaaattc agagatgcat caagtaacga 2820 tgaaacctca agagtagtaa tggaatatgt cctagagggt tggccagaag acaaggatca 2880 ggttgacgaa ctggcaagag aatactggaa ttacaaggaa gagcttagtg ttgaagatgg 2940 tttgctgttc aaatctgata gaattgtagt accaagatcc atgagagctg aagtacttga 3000 agatatacat ggagcacaca tgggtgagag taagagtctg agtttggcaa gagactatgt 3060 cttttggccc tccatgactg cccatattaa ggaccgagta cgttcatgtc agatttgtaa 3120 tgcattccgc aaccaacagc agagagaaac cctacatcca catgaccttc caggtctacc 3180 gtggcaggtt gttggaactg acctttttga atttgctggc cattcctact tgattgtggt 3240 tgatttctat tcgaagtatt ttgaagttga actacttcgg cagtccactg ccatgtgtgt 3300 tgtcaacacc ttgaagcaaa tctttgcaag atttggcatt ccagccaaag tgatcagcga 3360 caatggccca caatatagta acacccgcaa tattttcagt actacccatg agtttaagca 3420 gtttgcagaa gcttggggat tccagcatgt aaccagctca cccgagtatc cccagtccaa 3480 tggtgctgcg gaaagagctg tccagactgc aaagcgaatc tttaagaaag cagcagcaga 3540 gaataaagac ccatttgaag gtttattaaa gtacagaaat acaccttttg acgacatagg 3600 tgtctcacct gcccaactac tcatgagtag gcgtacacgt tcaacactac ctacccatcg 3660 acgtttgttg gtacctcacc cagtagaccc tcacagagtg gtaaaggcat tagcccatcg 3720 acaagcaagt tcacggatga gctatgatca acacagccgg gaccttcccc ctttggaagt 3780 tggggacaaa gttagagttc gtgtaaacaa agataaagaa tggtgtaaag cagaagtcct 3840 gccaaggtca tatgtagttg aagatgagaa aggacgtgta tttcgaagaa atcgaaggca 3900 catcatttct gtcccgaagg acacacccat gaatccgaag atgccagtgg ctcccacata 3960 catgagtcct caacctcaag tggtcgctag gaaagcgcag atcaatgaac cgccaagtcc 4020 attgaaagta caggaagatc agagagaaac agaagcacat tcacccatca gaacaagagc 4080 tggtcgtgaa gtgaagaagc cacaaagact tattgaacaa tgttaagaac attttttggg 4140 ttttcttttt ttgaacattt attgaagttt tgaaaggggg gaga 4184 // ID CR1-9_NV repbase; DNA; NEM; 3341 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-9_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3341 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3341 RA Kapitonov V.V. and Jurka J.; RT "CR1-9_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 403-403 (2007). XX DR [2] (Consensus) XX SQ Sequence 3341 BP; 887 A; 772 C; 730 G; 952 T; 0 other; tctttggtca gcggcgccaa catggctgcc acggtgtttc tgtgtctctg tttaaacgat 60 tagtagtaat ttgtacaagc gaccttgacc aattatgtgg ccttcgaacc tttgcttggc 120 tcagacactg aggtttatgt actatttcac caagttcatg acctttaggt ggcctagtaa 180 tcgtcagttt gttggtgtgc tcgatgggga actcgttggc agccatgctg aatcaacaaa 240 ttcatcatcc ccgggtagac ttgtctacag cagcgcctat ctcaagtcaa taagcaagac 300 tcaaaagaag caagtgctcc ccaaagatct gtggcaggag ctcaactccc ttggaattag 360 gaaaccattt agatcgaaac gaaagcgacg gccattaaat tccggtcacc ctgtgttgga 420 ctcaacagga atcctgcctt tgtctgagac atctgcggcg ccccctagtc aaactggagt 480 tggcatcgac tactcgcgaa ttgcaccggc taaaccgtct atacccaaca tcatgatttg 540 taatcttcgc tccttagccc caaaagtgga tgaactcgag tgcgtaatgg agcataacgg 600 cgttgatatt gcctgcatta cggaaacgtg gctgtctgat gagatctctg attcccaagt 660 gtccctgaag gattttacac tctttcggaa agatcgccca tctcacgctg gtggaatagc 720 aacctatatt aaatccgtta ttccctgtgt acggttgtcg gaggctgaac tctcaggtgc 780 tgtttcggag acaatgtgga tccacgtcaa accattccgg cttcctagat cggtgtccac 840 cattctcata ggagtcatat atcaccctcc tcatgcatct gcggaggata ataacatgtt 900 gtattcacat gttcaggaga ctgttgaccg ttttttgcgg tctcaccctg aagctttggt 960 ttgtgtgact ggtgacttta atcctacatc gacaaaaatt tcacctgtgc cgttcaagag 1020 atccgccggc ctcacccaaa ctgtgaatgt cttaacccgc gatactggga cactggattg 1080 gtgcctgact aacaatccta aatgcctcca agttcccaaa cagctcccaa aaattggccg 1140 cagcgaccat tacggcgttc ttattcaaca agccccgcca agtcaaaagg gtgtcaaatg 1200 cacgatgact aaaagagaca cgagggacag cgccctgcgg gggtttggaa gttggattac 1260 atcattttct tgggatgagg tatattgtct cgacaattgc aaggaaaagt tcgatctttt 1320 ctatcagatc ctgtcagatg cgatcaacca attcctgcca ctcaagacgt tccgcgtcca 1380 ttccacggac aagccttgga tttcgacaaa aataaaatcc cttgtcgccc gaagacagca 1440 tgcccttgtg cggtatggaa aggactctcc agcattcaaa atgtggagga ataaagttca 1500 aaaggctatt tcatctgcca aaatgtcctt ttataatagc aaggtcaaaa atcttaagga 1560 gtccagtgta gggaagtggt ggaaggagat aaagaatctt tctggagttt ctgatgattc 1620 tgggcagtgg tacctccaac tggttgatgg tctgattatt gactccgttg actccctgtg 1680 tgacaagatc aatgactttt ttgtaagtct cacctcgggt ttcacccccc tggcacagtc 1740 ggatgttaaa gaaattattg tggattctgt acctccagac ctgctcgcaa cgccatggga 1800 agcagaatta gcgctccgcg ggatcaaagt aaaaaaagcc cctggcccgg acggtctccc 1860 gaacataatc ttaaaggagt ttgctcatga gcttggtccc gttgttagtg acatttacaa 1920 cgcgtcattg gttgagggat cgctcccttc cctgctgaaa agtgcaattg taaaacccat 1980 tcccaagcag aaacccgcta agtctgtaga aaaagacatt agaccagttt ctttaacaag 2040 tcaagtcgct aaaataatgg aaagtttcac cttgtcccgg attacgccct cattaactag 2100 taaacttgac cccaaacagt tcgcccttgc aggtagatca acttctcaag cgttagtcta 2160 tttattacat ctcgcattag aagcgctgga taatggcaac tgttcgctaa gattcttttt 2220 tgcagacttc aaaaagggct ttgatattat tgatcatcgt atcttgctaa gtaagctttc 2280 tagctatggg ttacacccct ccttagtcag gtgggttgcc gcttttcttc aaggcaggtc 2340 acagagtgtc caaattgcta actcgtcatc agcttgtaaa tccccaaatg gtggaattcc 2400 tcagggaacc aaattgagcc ccattttatt tgcagttatg gtagatgatc tagtgcgcgc 2460 ctggggtcct agggtgaaat acgttgatga cttatctatt ctagaaataa ttcctcgcaa 2520 cgctccatct gtcatgagac atatggtaaa taatgtcaac aatttcgcac aaaataataa 2580 catgctgtta aatcctagta agtgcaagga gatgcgggtt gattttttac agtacaatag 2640 ttctcagtgc caaccaatag cggtcggcgg ttccgttatt gagtcagtca ccagtttcaa 2700 gcttctcggt gtgtatatct cttcggacct tagttggtca tcgcactgtg actatgtgat 2760 caaaaagtca aaccgtcgtc tctatgcact cagaaaacta aaatcatgtg gtgtctcaga 2820 aagggattta gtgtctgtgt actgttctct tataaggtcc atcttagagt atgcctgcgt 2880 tgtcttttcc aaccttccgc aatacctatg tgctgcctta gaaagaattc aaaaaagatc 2940 tctaggaata attttcggta gtggccttag ctacgaggac gccctcgaac gcgcatgctt 3000 gtcttcttta gaggcgcggc gtcacaatgt gtgcagaaaa ttcataagca atatcaaaca 3060 ggggagcgtc ttataccccc tagtgtcaag cagacttata tcctccaact cgccatactc 3120 cctaagatct aagcgctcac atagtgtggt tccgggtcgc acggaccgtt tttccaaatt 3180 cgtctcagcg caatatgctg gggatttaat gttattatga attatgtatg gtgtaatgta 3240 ttttgtagtt agctgaccct accggtaatt cagttgtaaa agaactgcaa acggttgaaa 3300 taaacgagca ttattattat tattattatt attattatta t 3341 // ID Gypsy-57-I_NV repbase; DNA; NEM; 3940 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-57_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57-I_NV; KW Gypsy-57-LTR_NV; Gypsy-57_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3940 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3940 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-57_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 549-549 (2007). XX DR [2] (Consensus) XX SQ Sequence 3940 BP; 1067 A; 912 C; 1101 G; 859 T; 1 other; attggcgacg agcatctggg acttgttctt aagcgatgag ggaaaggatt tggtggaaat 60 agagcaagag aaaccctaaa aaatgagtca gagatgggag acacggcgac attygttaaa 120 gtaaacaagt ttcacccggg cggcgactgg gagtcgtaca ctgaacagtt ggatttttat 180 ttcattgcga acaacgtaac ggaagagaag accaagaaag caattgtttt agcttatctg 240 aatcccgata cgttccaact cttgaaggat ttgatacagc gtgcgaaacc gaaggacgac 300 acgataacgt atgatgttat tgtgaaaaca ctgaaaggac acacgaagcc agagaagtct 360 cccattgtgg cgcgatacga gttcgataac cgttatcgca aaccagagga gtccgtaagc 420 gagtacgtgg ctacgctcaa gcacttggct ggagattgca agttttccga tgaagtaaga 480 agcgaaagat tgcgagacag gttagtgtct ggaattagag acgacaagat gttgagagaa 540 ctactaaaag agaaactcgt cgacttgaac tttgaaaatg ccggtcgaac aggcaaataa 600 agatgtcttg gcatttagga cggaagagct ccattccgag gtgaataaac tggagggaaa 660 taatggccaa aagcattttt tgcgagatgg agataccaca gggaacccaa ggaaaccacc 720 ccagagtgct acagtttcaa aatgttaccg ctgtaacggg aagcacgacc cgcggtcctg 780 cgttttcagt caatccaagt gtttctcctg tggcaaaata gggcacatta agagagcatg 840 ccggcaggtc aagcccaatg agaaaccaca ggcaacccat acaggggtca aggttatgaa 900 cgaaaactat gggagagagg aaacagaggg tgacgatgga tggtatggat tgtatgaagt 960 gggctctaag ccatctagga aacccatcag tgtcgacata gaggtagaag ggattgggtt 1020 tcaaatggaa ctggatactg gggctgctgt ctcagttata agcgaggcca aataccgcga 1080 gtgtttgcgt catgtgcccc tggaacatac tgatctaaaa ctacatacct acagagaaga 1140 gaacttggtt ccgcttggag ccataacagt caaagtgcgc tacggaaacc aagatacttc 1200 ccttccctta tatgtcattc ccgggaatgg acccaccctg ttcggcaggg agtggttaca 1260 ttcaatcacc ctgaactggc ccttgttgaa tctaaccgca agcaagaatt tagaggatgt 1320 acttagcagc catgcttcag ttttcaagga agaccttgga acacttaagg gcatcagggc 1380 aagtatccag ttgaaagacg acgctgtccc taagtttttc aaggctcgcc ctgttgcgct 1440 ggcccggaag cctgctgtgg agcgtggttt ggaagcttta gaagcgcaag gaatgattaa 1500 gaaggtggac cactgtgact gggcggcccc aattgtaacg ccattcaaga aggacggaga 1560 ggtgcgggtc tgtggagact ttaaggtcac agtcaacccc caattgcgag tggacgagta 1620 tcccctgcca cgcatcgagg agatatatgc tagcttaagt ggggggaaac agttcagtac 1680 cctagacttg aggcaagcat atttgcagat ggagctggaa gatgacgcca agcggtattt 1740 gacgataaat acaacacgcg gcctctatca gtatcagcga cttgcgtatg gcatcgcctc 1800 agctcctgca atctggcagc gggcgatgga ccaggtccta caaggtatac cacacgtgca 1860 gtgttacctt gacgatataa tcattacagg ctccagcccg gaagagcata tctccactct 1920 ggacaaggtt ttgggctgac tggaggactt tggccttagg gtcaacagaa agaagtgcac 1980 attcatgcgt gattcagtgg aatacttggg tcacataatc tctgcggatg gtctccatca 2040 gtccaagacc aagactgaag ctatgacaca gctccccaac ccagagaatg ttggacagct 2100 gcgctcattc ttaggaatgg tacagtacta ctcacggttc ttgcctgatt tggcaactca 2160 cctagcaccc ttacacaagc tactacagaa gggtgtgtcg tgggtctggg gtgtggagca 2220 gagtttcagg aaggtcaagg gcatgctgtc ggaggagcgt gtccttacac actttgaccc 2280 ggacttaccg ttgatcctcg cctgcgacag ttcctcttat gggctagggg cggtcctgtc 2340 acacgtgttg gcagatggta gtgaaatacc aattgcatac gcatcccgct cattgagcaa 2400 gacagagaga aaatatgctc aaattgaaaa agagactctg agtttgtact ggggaatgcg 2460 gaagttccag atgtacctag aggggcggaa gttcaagttg attacggatc acaagcctct 2520 taagtatatc atggatcccg gaaagggagt tccaattacc acggcagcac gactgcagcg 2580 atggtgtctt ttcccaagag catgccaact gtgatggctt gtcgaggctt ccgctagtgc 2640 agacaccagc ggatgagccg gacgaggtgg aactgttcca tatgtctgta cttgatgtgt 2700 taccagtcac tgaaagggaa cttcgccgcg aaacaaaccg agacccactc ctcgcgcggg 2760 tggtgcgctt ggtagagacg ggatagggag gggctgagcc taacccggac ttggcacctt 2820 atagcagccg caaggaacag cttactgtct gccacggcat catcatgtgg ggtaaccgtg 2880 ttgtggtgcc acccaagctt cggcggcgag ttcttgacat actacatgag ggtcacacgg 2940 tatggttaag atgaagggag tagcacgggg atacatttgg tggccacgga tcgacagtga 3000 gatcgaggcc accgccaagc gctgccaagg ttgccaggag acagcccgga accctgctcg 3060 agcccctcta catcggtggg agtatccagc gcaaccctgg caacgattac acatcgactt 3120 cgctggtccg gttgcaggcc acatggtgat ggtggtgtcg gatgcgcata caaagtggcc 3180 cgaggtcttc atcatgcaca gggacactac cgcactggaa actgttaatt ccttgcgtac 3240 actatttgcc cggatgggcc tccccgagca aatagtaacc gataatgggc cacagttcaa 3300 gtcgagagag ttcgagcatt tcaatgcgct cactgcagca caagctggac aggttcctgt 3360 tcgcgtatcg taacgcaccc cacgctactg gttacagccc ggcgcaacta ctttttggaa 3420 agaggctgcg atcgagactt gacctgatcc ttcctgatgt cagaagagat gttggaaagc 3480 agcttttgca ggatgagcac cgtaatctca cctgtttcga gccagggagc gttgtctggt 3540 tgaggaacta ccgagatgga tgcgcgggaa ggtgctagaa cgcactggat tgttgatgta 3600 cacggtgaag gttcacgatt attcctggag aagacatgta gagcaacttc gctccgccaa 3660 tccaggagag ggcagcgagg tgttggacaa cccggtagac cccgccctgg taagcccaga 3720 ggcaggtcca actgcaacga tggtaacgac aacagagttg acacccacag agcagcctgt 3780 ggccgaacca gagatgccag aggccattgg agatgttgcg agccctacgg cactgcgatc 3840 atctcagcct agacctacac gctctgggcg tgtagtaaaa ccccctggac gttttgttta 3900 ggctttcagc atgtactagt cagagcctta aaggggagga 3940 // ID DIRS-4_NV repbase; DNA; NEM; 2952 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-4_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2952 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2952 RA Kapitonov V.V. and Jurka J.; RT "DIRS-4_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 443-443 (2007). XX DR [2] (Consensus) XX SQ Sequence 2952 BP; 864 A; 670 C; 594 G; 823 T; 1 other; gccgttaaca gcaacatcaa tagtgctttg tagtccaatg taactgaaag gaaaacagtg 60 acattaagtg tgtgtttgtg tgtctgtgag taggcatatg cgtgtgtaat tcatttactt 120 aatgaataat agtgtacagt atatatctgt ttacctttaa agctgatgct gtacttgact 180 ccatcaacag taagtcctgc atctttgatt tctttttttt ccctatttag tcttgacaag 240 agctttttta cctcaaacct taattattta aaaaaaaatt gcattagatc cattctaaaa 300 gtaatgacca cagagttcat aatcctgctt gatggatgga tggatttagg tttcagcaat 360 tctcaagtga cctacaaatt ttaaattctt tggaaaggct atcattttaa tagatctgca 420 caacttttaa tagaataatt cactaattgt ttctttgtta ttaactatgg aatgcttgac 480 ttataccttt tctcagcaca gtttgcaatt gcaagtggat aaacagagag ggcactctgg 540 tgtccagctt tatagggatc attgggacta ttcctagtga tamttagcca actacaatta 600 tggaagggga agttatgtaa agggaaagaa gttatgtaag gggaaaaatt taaaataaca 660 gaaaaaataa aataagtacc tgctagaggc ctgccatcca gcttcaaatt ctatctgtca 720 tcagtcatac gtcactacgg agtaacatga gaagcacgcg cgcttgctta tcgagccatt 780 gtacgctcgc tttcacagca gccacacgcc tacctgatcg cagatcaact acttcaaaaa 840 attctacatc tacttcaact attacctttg gtaatcgtga gtacttcggg gctaacaacc 900 aatccattgt gttttgatat tctttatact aactaatcgt cacttgttct atatattttt 960 agtaccttac taaaacatgt cgaacaaagc tgaaaatgcc tcccttgagc acatgctcga 1020 agatgaggct agcggtccat cggaaaccca cacggcatca ccgatgcaaa ctgaacccca 1080 ccggggtaat ggcgaaagcc acgaggtact ccgtacaacg gccatcgcag ttctaaacca 1140 catgggaacg agccactctc cagaacttaa cctactgggg aagactattt gggagtggtg 1200 tataactaga ggcatatggc ttagctcagc ccatatcccc gggatcgcta actgcctcgc 1260 agaccgggaa tctagaacca aaatacgaca aacagagtgg atgctcaata cagatctagt 1320 gtcatttgca ctttctgagc tggaattcag ccctaacatt gatctatttg ccagtaggct 1380 taataaacaa ttcactcgtt atgtgtcgtt cacacccgac ccgggagcgc tagcagtaga 1440 catgtttaca ctgacgctat cattgaaatt ctatgcgttt ccacccttta gtgtgatcgg 1500 cacttttctg cagaaagtcc aacaggacca cgcaacggga atctgtgtcg tccccgactg 1560 gccgacacag gcttggtacc cgaaagtcaa gaccatgtgt ctcaagcaac cgatcaccct 1620 cggcccacag aggaacatgc tgtcattgcc gggtcaccct cacgagatac acccgctgca 1680 caagtccctt cgcctgctgg tctgcctctt atccggcaaa ccctagaagg taacgagcta 1740 ggaaaggaga ctatcgatat cattatggcg tcctggagga cgggcacgtg taaacaatac 1800 aatgtgtatt tacagcgttg gttggcattt tgcaaagata acgcaatctc attggaacgc 1860 gcaacagtgc aagatgggct aactttcctc acacggctat accatgaggg tctgggctat 1920 agtgctatta acacagcccg gtccgcatta tctacagtca taaccactag caacggcacc 1980 ttcggtgaac atcccctagt gacacgtttc ctgaaaggta ttttcgagct gaggccttcg 2040 ctgcctaggt ataaacatat ctgggacata ggggtagtgc ttcggtatct tcgatctatg 2100 ccgccccata tggaactatc acttaaggaa ctgaccaaga aactcacaac tctcttggcg 2160 atattaacag ttcaacgatg tcaaactcta gttaaacttg acactcaata catgcaaatc 2220 atggataaaa agatcgtgtt cacaattagg gagactctaa aaacttcaag accaggaaag 2280 cacatacaac caatagagct tcacgcttat gaggccgata atagattatg ccctgttaca 2340 cttataaata gctacgttca gcgtacgcaa acattacgag gtcaacacac ggccctactg 2400 attagtcacg caaagccgca caaccctgtc acgaatgcca ctgtcgccag atgggttaaa 2460 tctacactac aagacagtgg gattgacacg aacgtatttt ctgcgcacag tagcagaact 2520 gcagccgcat cttgtagcgc tagtgcaggg ttacccttgc aagatattct gaaagcaggg 2580 gcctggtcaa cagaattgac attcgctaga ttttacaata agcctgttga accccttaac 2640 attgggaacg aacttctaca acagttaaat atgaacaatt aatttttact tcaccttaga 2700 gtattttata ggggaatgct atagcatctc atttgtattt gttattattg ctaaattatc 2760 acattgtacg cacatacttg tgttgtttcg tggtgcaatt gttctgatat ggatactcgt 2820 tataccacgc attttgtggt tgacaagcta tttggcagat tttgtcccca cgatgcactt 2880 actggctctc gcgctcttta aagtctcatg ttactccgta gtgacgtatg actgatgaca 2940 gatagaattc ta 2952 // ID Harbinger-N30_NV repbase; DNA; NEM; 869 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Harbinger-N30_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW 3-bp TSD; NVREP304; Harbinger-N30_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-869 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-869 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-869 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N30_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~94% identical to the consensus. XX SQ Sequence 869 BP; 237 A; 202 C; 196 G; 233 T; 1 other; ggcctagatt aaacggcgtg ccagggtcgc attatcgagc cgctctagaa aagttcgaca 60 gataatgcga cgttagcacg ccgtttattg cgcacgaaat tgaattaatg aggaggtcgc 120 accaactttc tggggcgagt gggctagtcg gataatgcga ctatggtacg gcgagggatt 180 aaacggtgct ccaaggtcgc accagtcata acgattacat tatgcagatt agtttataat 240 caatgcaaat cgttttggtt gaacaaaaat aaaaaaagga gctacccgtg cagagtatta 300 ttgactcccc ccgttcttcg cgcatgcgcc maattgacaa taactcccct gagaccctgt 360 atgtagcctg aaagcccgta tgtagcccct tgcctcgcac ttttcaggca atagtgaaaa 420 tggcggcgtt tcggaaatca ttacctgagg actcgacggg tcgggtacag atgtgcagct 480 cttgtttcgg ggacacgaaa tacgagtgca tttcatgcga aatgccgttt tgtaataaaa 540 aaaaaaacag aagacgcagc aggagtcgtc gccttttctt tatccaatct attgcggcat 600 gtaatcaatt cattctcctc ttcctattag accatattgc tctgaccaag aaggcttttc 660 tagtcatttc tagtcttcgt gttctgtcct ccattttagc gccataagac aaagcagcat 720 gtattttgtg cctaatgact atattgttac actccatacc catgggagtt aacaaacaaa 780 aagttcgacg tttattgtag agccgctcta tgatcgaacc tctaccgaac cagaacggtg 840 cgactctggc acgccgttta atctaggcc 869 // ID DNA-TA-27_NV repbase; DNA; NEM; 2016 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TA-27_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW NVREP318; DNA-TA-27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1881 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1881 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2016 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-27_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 2016 BP; 684 A; 374 C; 335 G; 622 T; 1 other; ttcttggttt gcatgtgacg tcacgctcat tagcataacc acccggcggc catgttggag 60 gtctaaacac atttcgcggc gctagtgcaa acgctcgaaa gtttgataac aaactcatca 120 aaaacaaaca aaagggccgt tttgttatac tgttgttata gctgtacaaa aatattaccc 180 atatgtatat ccacttgatg acaaaggatt ttagaatgat taaataatcg agaaaaatgt 240 caggaatgag tggttagtcg aggggatcca aactaacaac cagacaccaa aacagattgg 300 ttttctgcga tcatttcatc aacggtaagt tatttcatct cttttttaaa gtttaaattt 360 ttgtgtcttt tccgtatttt cctttgttca gcaaacatgt ttttcggact gaaaaagtaa 420 tttttgtaac taagcttata tttcacaaaa tcttagttgc cttttctttc tcttttagga 480 tgctgttata cctccaatat tatagacgag gagaaaaatg cgaatatgtc ctatgagact 540 atggccttta gtgaacaaca aatttgtttt agaaaaacac aaattgttca tgagttgtac 600 cctagacaca ttgcaataac tcagacttct aaaagcttct ttcaaggttt atttcaccca 660 ttgcttactc ttgatcagat tgttatcatt agcatctaag aggtggcaaa aaataagcta 720 tgtaatgcaa ggcaaatgtt taatctaaga gcttgaatca atagtaattt atgaggtatt 780 atgagatggc tggtgcagaa caaagatttt tgcctgttat tgctctacta aataccattt 840 gtaccttgag gtcatttgca caaactattt gtgaataaca tcaatttaga aaaatgcact 900 tattttctga agaaactgat ttttatcaca tctacatttg ttttgcacct tttgatctgg 960 ttgcacaaac tattttgtaa tttaaagtag aaaaaatgtg ggtaggaaaa tgtgatgtag 1020 ctctctctgc tccaattaat gattcctatg tggttatgat acatgcccat agactctcag 1080 agaaatgctt attaagtact gcatttccct cactttacta ataaaagcca acagtggtat 1140 ttgacacata ttttagtcca cagaagataa attgcagtcc caaccccccc cccccccccc 1200 caaaaaaaag aataaaataa ataacaaatc agctgtgtgc ttttgtggac atcaacttca 1260 aaatccctat atttaagaaa agagaagaaa atgctaaata gagttgctgt ttgtgatttg 1320 tggtagctag ttcaataaat tttaaacttc gaaatataag attaacatca atgattamaa 1380 acataagtaa ataataccaa tgaagtatta ataagagtta cacagatgaa tcacaatgaa 1440 attatacatc taaatatcaa agtaagcaaa aagtctgcaa gtgcattaca tccatattta 1500 tcagaggtaa gtaaattact tcaactgcca aaaactatcc tgtttaccca ttgatccaga 1560 aacttgaaaa caaagtaaat gaaaacttta ccagccatat gcatctacta aagccaaaag 1620 aacaatatct caagtaagcc tttatcttct gcgtgtctcg gcgataaaga agtcatctaa 1680 acctacatgc ttttccaaag atgtttacaa acgatctcga tcgcccaaca ggaatgtccg 1740 gtagcacgta gttcacagga aaacaaagga aacgtatctt gcaaatccga aactttggta 1800 catatgggtg aggaacataa aatgcttctt tcctttatgg ctctctcatc acttggaccc 1860 attttctcct gataatagac ggaaaaagat acacatcgct acggttggtg gtggtgcggc 1920 cgccatattg aatttttgtt agacctccat ccacaggaaa cccggtcaaa ttagctaatt 1980 tgcatacgat aaggtcacgt gtttgcaaac caagaa 2016 // ID hAT6-N4_NV repbase; DNA; NEM; 181 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A family of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW NVREP301; hAT6-N4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-181 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-181 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1197-1197 (2007). XX DR [2] (Consensus) XX CC It is a family of non-autonomous hAT DNA transposons that belong CC to the hAT6 group, characterized by 6-bp target site CC duplications. hAT6-N4_NV contains 13-bp imperfect TIRs and shares CC common termini with the autonomous hAT6-2_NV. The hAT6-N4_NV CC family is relatively old: genomic elements are ~5% divergent from CC the consensus sequence. XX SQ Sequence 181 BP; 45 A; 42 C; 28 G; 66 T; 0 other; catagctgtc aactctcccg cattaggcgg gagtctcaag attttgaacc ttttctcaag 60 cctaattttc ttgaaaatat ccatacattt actgtattct cccgcattag ctatcttggt 120 acttctgata cattcactgt attttctcaa gatttttcct aaagcgaggt tgacagctat 180 g 181 // ID MuDR-1_NV repbase; DNA; NEM; 5366 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone MuDR-1_NV autonomous DNA transposon - DE consensus. XX KW MuDR; DNA transposon; Transposable Element; MuDR-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5366 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5366 RA Kapitonov V.V. and Jurka J.; RT "MuDR-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 622-622 (2007). XX DR [2] (Consensus) XX SQ Sequence 5366 BP; 1688 A; 913 C; 985 G; 1552 T; 228 other; gcaaatttcc ctttcgtaaa cggtcgttgc caattataac ggtcgttgtc attcctgaga 60 accgtcgttg ccattttaaa ccgtcgatgc caaatcgaaa accaaccgaa ccgacgactt 120 ccttcgtgac tagttcgaga gtgattttcg ctcaagagtg ttgtatgacg tcattacttg 180 gatggctcaa gatggcggac aaacccgatt ttctcaaaga tctaatatct tcagctataa 240 aagaagtgca ttcgaaaaag agatcgtttg aattatccga aattacagat gagtattttt 300 tggcctcgct cccagatgat tctttttact acctgaagtc aatttcagga aatagagaga 360 acttcaaggc ccacgtgttg actgaagata ttacagaaga aaacctggag ctatggatat 420 ctgagtacga agtcattaat aacgtttcca tcaagctcaa gacaaagaaa aaccccacga 480 gtggctacgt gcttcagaat tattataggt gtcagcataa tactcgcaac tggagcccaa 540 gtaaggaccc acagaaaaaa ttacatatca atccttctgc tagagtgaaa aacaccaact 600 gtcccttcca gatgattgtc aaattggaca acaaggggtg ctgctcattg gatattgagt 660 gggagcacaa ccactccctt gaaactttgg aggcatcaaa ctttctggac ctgactcctg 720 agtgtacaga aagagtattg aaaatgtatg aaagtgggca tacaccagca actgcaagac 780 aacaatactt gaaagagctc aaggaatcat gtaatgacga tttggaattt catcgaaaga 840 aggctaatcg agcagttgtg ccaagaagaa gggactttag ctacctttac acacaatatg 900 gcaaggatag gtatggagga caaggggtaa tgatgtacca gagactggct gaaaggcttg 960 aacaatatag caaagataac cctgatgcta ccactcacca ccaagtgtac gggggggagg 1020 acaaacctct tttggttgct attgttacac cccttatgaa gcgtgtacac aatgaagttc 1080 agcagtctgg agaaatggtg tttgtggatg ctacttctaa cactgaggag cacaatctta 1140 aagtgtttgt tatgtgcaca cataatgttt caggggcact tccacttggt attctgatag 1200 ctagtgatga gcgagagtcc acattaaagc agggctttaa aatgctctgc tcgtgcttac 1260 ctgaatatgc attcaatggt cgtggaaagg aaaatggacc aaaagtcata cttaccgata 1320 actgtaaaga ggaacgaaat gctctgaagt ctatttggcc cctatccacc ttacttctat 1380 gcacatttca catgctccaa caactttgga ggtggcttca tgaaagcaaa aacaatgtca 1440 accttgctga tagaccattc attctcaacc ttttcaagaa atcactatat gcagagacag 1500 aacaagaatt tgagaacagc tttagcgaac ttttaaatga tgaccattgc atggaaaacc 1560 ccactttagt aagctattta caaaaacttt acaatgacaa agaatctttt gctctatgct 1620 ttagaaaaga actgcctgtt agagggaacc acacaaacaa ttttgctgag gctcagtttc 1680 tggttctgaa agatataatt ctgcggcgaa caaaagagta caatgttgtt gggcttctgg 1740 acaagcttac aattgattta gaagaccact acaagaataa actcctcagt attgctgatg 1800 ggagttttga tggcacttat agacatcgat tcatggggaa agggaaaggg aaagggaaag 1860 gaagctttgg gtttaatgtc ccagatagaa aagaacttga tggctacctt tcttctgttg 1920 aaagttttgg taataatact ttcaaagttg gaagctcttc agatggcagt caaaggtcag 1980 tatattttct gtacatttac tcgttataca atacttttga gtggcatact gcagaatatg 2040 ccatgcatca cttaaaagaa aatacaagtg agaagtggga tattttgcag tataccacaa 2100 gaattcattg tataactttt tttatgccac gccacagaaa ataaagagca aaattaatga 2160 ttatatttta ggagcagtgc atgatgcaat atacaatgcc attcctgcat ttcgattttc 2220 tgttacatat tctgtacgta gcatggttta aatagagata atcgtgttgt atggaatttg 2280 gtggttgaca atgttcccag aaaaaaatct tttctagagg atatatccca atagtttttc 2340 tttttttcag ccatacagta gacatgacta ttggaatgtg tacctgtggc attggcaaag 2400 atgggagccc atgcaaacac cagtatgtcc tttgggtgtc caagctggca gactgtgtta 2460 attttgtccc agtaaacaat ccccgtgaga gacagaaatt agcctggttg gctataggag 2520 agacacttcc tcttagttac tatatgccat tgcgctcaac tgaggctgaa cagattacat 2580 tgcaaccttg tggacctaat gagtgtggca ctgtcattga gaaatccatt aacagggatc 2640 aagaaccaaa ctacacgact ggtgaagaaa ttcatgatga ggataaatct attattgcaa 2700 atgctcaaca attgatgagg agctcttgtg accaaattat tcaaaacctc caaagctctg 2760 gggatcttaa tttggctaaa ggaataataa agttctccaa aagagtaaca accttaacag 2820 cgacaaggtc tatgaattca aatttggtga gtgccctttt ctctttcggg tctaatgaac 2880 tgaagaaaac tggaagtgga aaaaaaatcc gtgttcagcc aaacaggaag caaaagtgtg 2940 gtagtggaag ccgtcaggct gtttcaaaag ggcgtccagt acaacttcaa gaaccaacat 3000 cgaagaggaa gcgcagccat gatttggcaa aagtagtaca ggcaaatgtc aatagcagca 3060 aaaagtcagg gtcccacact atgaaatcta agacaaagca cattcaaaag aaaaaaacaa 3120 agaaagagaa atcctaggga aattttataa aatcctgtaa gtatgtttta tggaatgcat 3180 caaaggtata caatgttcaa tatttttgtt gttagacttg ttcttttata aacattacag 3240 tagcgaagca gcaaacttaa agtaaagtat atatatataa ttgttgtcat tgaaccannn 3300 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3360 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3420 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3480 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntgatg taactggtga 3540 aagattgggt tgcatcatca taaataaaca ataactttta caaataatac atatgtataa 3600 tatatatata tatatatata tacatatgta taatatatat atataatata catatgtata 3660 atatatatat atatatatac atatgtataa tatatatata tatatatata tatatatgta 3720 taatatatat atatatatat atatatatat gtatatatat atatatatat atatatatat 3780 acacacaatt ttattacatt aatatattct tagcttacag tatataatca ttatcttatt 3840 attagtcctg taaacagctc agtaatttgg taggcctttt atcactgtaa tgagttttta 3900 ataaatggta tattattatt ttgttttgtt tttctgtttg tttaatacat agtgatacag 3960 taccacattt attagggtca gcaatgttaa aatgatataa aatattcctt tctggaataa 4020 ctcatttatt tcaatgggta ctttcatgtc tcttgagatt tcttttctct gcgaaactct 4080 tttgacatgt accacattta tatgttgcat tgtgctcttt gtttttatgt ctcttcagtt 4140 tttgctcatg attaaattgc ttatgacata tttcacaaat acactcatgg cagccttttt 4200 tatggtactt catgtccttc ttcctcttga atgtggtgtt gcaggatgga cacttttcct 4260 cttctgcaat gcccatatca agttcttctc tttggcattg tgctttatct ttccagtcct 4320 atatataatc aaagcaagat attatttatg tatatatttt gacaatcttt ttgaccctaa 4380 attctacatt tgaggttaga taaatggact taggcttgag ttgatatggg ctattctatt 4440 ttaaaatgtg caccaccaac accagtgaaa tccaaagggg aatggggaga aacatgaatt 4500 aattagaagg attttaaaaa aatgcaaaat tcccaaaaaa agtaaggggc tattaaattc 4560 caagcagtaa ccctcttggc atgtcacaaa ttacatatct gataaggtta gatcaagatc 4620 ctacatctac tggacaagga ccaaaacata tttagaaatc tggatactct aaggcttgta 4680 tttttctcta gtctattgat aaaaagccaa tggtgatggg gcacaaaagt tagccaaata 4740 ttcgcaaatt tggggaagat ctttgtttct attgatatta cgaatgtttt tctaaagtaa 4800 agaaatataa aagctcgtga tggaaataat ccaacctttc gtacatcagc agacaattgc 4860 ttccacatag ccccaacgac tttggaaacc tgcccaatct ccgaatctcc gagttgttca 4920 gtgacatctg gctgttatac agaaaaaaga atataaaacg atgcctgcat ttattactgc 4980 aatagcacga agtattctgg ttctttctcg tgtcaaaatg cgccattttt tttttcagga 5040 aatataccaa aaactcaccg caactgattg aaaaaaagag ttccaccctg ttggcttctt 5100 gatagatctt ttgtctgcag aagaatggga tggttttggt ccagcactcg cgcacgtgga 5160 ctgatccgcc atcttgtaaa cagtgccagg taatgacgtc atacagcact cttgagtgaa 5220 aatcactctc gaactagtca cgaaggaagt cgtcggttcg gttggttttc gatttggcat 5280 cgacggttaa aaatggcaac ggccgttctc aggaatgaca acgaccgtta taattgccaa 5340 cgaccgttta cgaaagggaa atttgc 5366 // ID hAT-10_NV repbase; DNA; NEM; 1459 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-10_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; hAT-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1459 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1459 RA Kapitonov V.V. and Jurka J.; RT "hAT-10_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 584-584 (2007). XX DR [2] (Consensus) XX CC Terminal portions of the transposon are not known. The genome CC contains only a few copies of the transposon. XX SQ Sequence 1459 BP; 480 A; 295 C; 296 G; 388 T; 0 other; gttatatacc atttttctgg ggagattaga aacgcctggt tgttctcagt tctggccgat 60 gaagcagctg acatttccaa taaagaaaac ctaagcgttg tgattcgttt ggtagactcc 120 tccacccaga ctattagaga agagttcatt ggtaaccaag aatgagatga cgggacaacc 180 ggtgaacaaa tcaagaaaaa aatcttagaa gctgtaacga cttaggaact atggaagact 240 atggaagact gccatcggca gtgttatgat ggtgcaggga atatgagtgg aaaaatgaat 300 ggagcatcct ccctaatcag ctgtgaacac agcaaagcca tctatgtgca ctgaatgaac 360 catcgcctta atttctgtgt tgctagcaca tgcttcatgc cccttgtgag aaatgcaata 420 gaagttgtag gaaaattaca tgccgtcttt gacaactcac ccaagcgttt ccagtacttt 480 aaagaaaagg tcaatgaact tgaaaaggaa gcaaccaagg taaagttgat taatgtctgc 540 agaactagat ggatcgatcg aattgaagga atgcaccgag taattgaact gttacagcct 600 gttgctgaaa cattcaaaga cattgcactt aaccaaggaa aagactggaa tccaaacagt 660 cgcattgatg cccaggcact tgtaaatgct ctatcatttt cgtttatcat aactgtagtt 720 gtagtttctt atattctaga ccttacaaag cctatcactg tcaagctgca ggccaaggaa 780 atagacctac ttaaagccaa agatgagctg agaatcctca aatcaagtct gagagacatg 840 caaaataata ttgatgaaag atacaatgtt gtccatcgtc aagctgttga acctggccga 900 aaaattggag ttgaaccaag catgcccagg attgttcaaa gacaagtgca tcgtgacaat 960 tctccagccc aaaatcctga gcaatattat aagattaatc taacaacaaa atttcttgac 1020 catgcccttc agcaattaga taaaagattc caagatgaag tatttgtttg ttataaaggg 1080 ctttcacgta ttccatctgt tcacatctga tcactacctt agagacctcc caaacccagc 1140 agccttacca gcagaactta tcatgtggga gaaaacttgg gaagataggt ctagaggaga 1200 gcacatccct gatacagtta gaacaacctt acaaaccgtt catcctgaga cctatgtgaa 1260 tatatatacg atgctgcaga tccttgctac aattcccata tcctcctaat cttgtgagag 1320 atctatatca tccctgagac atctgaaaac ctatcttagt agcactatgg aacaagaaag 1380 gctgaatggc atagcactta tgttctcaaa caggggaata tgattcagtt tgtcgctgtt 1440 aagtttgcta gtgttgttt 1459 // ID Gypsy-62-I_NV repbase; DNA; NEM; 2572 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-62_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62-I_NV; KW Gypsy-62-LTR_NV; Gypsy-62_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2572 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2572 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-62_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 559-559 (2007). XX DR [2] (Consensus) XX SQ Sequence 2572 BP; 770 A; 694 C; 619 G; 489 T; 0 other; tctcaaaatt ccccatacag cttacacaac cttacatacc ctacacaacc ttatacagcc 60 tacacaacct tatacagctt acacaacctt atacagccta aacaaccttt atacagctac 120 acaaccttaa acagcctaca caaccttaaa cagcctacac aaccttaaac agcctacaca 180 accttataca gcttacacaa ccttatacag cttacacaac cttatacagc ctaaacaacc 240 ttatacagct tacacaacct tatacagcac acacagcctt gtacagccta cacaacctta 300 tacggcttac acaaccttta tcaccctgat atgtaacaat caacgggata gtgtaacaac 360 aaccggattt gtaacaacaa tcaatcaggt atgccattta acaccccgat tgggctctac 420 gagttcaaca ggatgccttt cgggcttcag aacgcgcccg cgaccttcca aaggatgatg 480 caatggatct tccgagagga tctgtaccag aagctgatgg tctacctgga cgacataatc 540 atcgtggcac ccaccattgg cgagcacctg aggcgtctgg aactggtttt ctcaaaacta 600 aagcagcatg gtctgaaggt cgagccacag aagtgcaagt tcttctgcag cgaggtggca 660 taccttggcc atgtagtatc accggagagt gtgtccaccg acccagagaa gacggcggca 720 gtgcgagagt tgccggttcc aacaacagtg cgcaatctga ggtcattcct tgggttcgca 780 tcttactatc gcagattcgt cgctaagttt gcccagattg ctggacccct acaccaagtg 840 gtggctgcga tgggaagtgg aggcagcaag cggagcaccc ggaagcagat tagtgagaag 900 tggacgccag agtgccagac agcattcgac accctaagga ccctactgac ggcagccccg 960 gtactcgccc acccagacta caccaaacca ttcctgctct agactgatga atctaacgag 1020 ggactcggcg cggtgttatc acaagaacag gatgggaagg ttcgagtcat cgcctacgcc 1080 agcagaggac tacggggtgc tgagctgaac gcaacatgga aaactacccg tcgcgaaagc 1140 ttgaactcct agcactaaag tgggcagtag ctgagaagtt tctggagtac ctgttaggga 1200 ccaggtttgt cgtgttcaca gacaacaacc cactcaccta tctgcagtca aaaagcaaac 1260 ttaaagcagt ggagcagaga tgggctgctg agctagcaag ctttggcttc accatcaagt 1320 aatgccctgg gagacacaac caaaatgctg acgccctgag taggattcac cgcgatgaga 1380 aagaagaggt agcagaggca gatgtttcta caatcaacgc acagggtgca gccataacag 1440 ctctaccaag tgacaagagg atttgcatac agcggttcat ggtaaatctc cgtcagaggc 1500 aagaccaaca gcagactgat gagcaggcaa catcgtttcc agctgtaccg gtggaggaga 1560 tgcagcgcct acagagagaa gatgacacac tgcgtcgcct gtgacattac cacggtctgg 1620 aaaggccccc aaagaaagga actgagggaa gagacaagag cagcacagcg cctacttcgt 1680 gagtggacta gaattaaaga gaaaggtgga ttactctatc ggcagattca ggatggtaga 1740 gacggccctt ttatccagtg tctcatcctt cccaagaccc tcaagggcca agtactcaag 1800 gcagcgcaca atgcaggagt tgtgccagct gtatggcatc aagaaatcaa gaactactcc 1860 ataccatcca caaggaaatg gtcaatgcga gaggttcaac cgaagtctcc atgatctgct 1920 acgcacactc cccgcagaca agaagcgaag gtggccagag cacctcaagg agatttgcta 1980 tggctacaat gcgacacctc acagcaccac cgggtactcc ccattttacc tgtttgggag 2040 ggatgctcac cttcccattg acactctgat tccagacaat gtaacccctg agaatggaca 2100 gcagtggatt actgaacacc agaagcgact acgtgaggct cacaccaacg ctggtgaacg 2160 cctcaaggaa gctgcagaga ccaggaactc taggtatcat caaggcagac acctagctga 2220 accaattcca gttggggaac gagtgctcaa gaggaacagg ggagtacgtg gcagaaacaa 2280 aatacaagac cgctgggaga gcgacattta caaggtgtgt gagcagaggg acaacactta 2340 cgttatcaag cgggcagatg gccatggtgc tgaggtggtg agccgcgctg aacttcaggt 2400 ttgcccaaga tcaatggcac caaaacaacg tcagagacgc tccccggccc ctgcagccca 2460 tctatctgac agtgactcgg aagaagatga tccagcacca gttaacccag caaagagcac 2520 agaccccgac agcgaggggg aacagatgcc actgcgacgg tccaccaggg ta 2572 // ID Gypsy-78-I_NV repbase; DNA; NEM; 3243 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-78_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78-I_NV; KW Gypsy-78-LTR_NV; Gypsy-78_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3243 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3243 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-78_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 577-577 (2007). XX DR [2] (Consensus) XX SQ Sequence 3243 BP; 974 A; 788 C; 801 G; 680 T; 0 other; gaaatggaaa ttaaactttc gcacagcact ccagtacaga aaacatacac cgctgttcca 60 agaccgcttt ttcctgaagt aaaggcttac atagaagacc tcctaaacag aggctggata 120 accaagtcat catcatctta ttcgtcacca attgtttgta ttcgaaaaaa agatggcacc 180 ctgaggctgt gctgccatta ccgcgaattg tacaaaaagt gcgcagctga cagacatccc 240 attcctagag ttcaagagat gctcgacaat tttggtggca acaaatggtt ttcagttttg 300 gatcaaggca aggcatatca ccaaagccgc ctcaaagaga gtagtcaaca cctaacagcc 360 tttgttactt catggggact ttttgagtgg aaacgcatcc cattcggact ccggacagcg 420 ccgtcctgtt atcaacgctt tatggaggga gccttagaag gtctgcgtga cgacatttgc 480 gtcccatacc tcgatggcgt aatagtgtac agcaagacgt ttgaagaaca tgtgactaat 540 ctccgccgag ttctccaaca acttcgcgag aaaggggtaa agctaaaacg gaagaaatgt 600 cacgtatttc agaaagaagt gagttacctt ggaagattgg tgtcggcaga tggatacaga 660 gtcgatccga gtggtatcaa ggctgtgact gacctgaaga cggccaagcc ccagacagtg 720 aaagaagtca ggagaattgt tggactcctg ggttactatc gccgttacat tcaggatttc 780 gcaaggatag ccaaaccttt gtacgacctg ctgagtacac caccagatct gaagggagca 840 gaggggagca gggacacacg aacgaaaggc aagagatagc aattgcgacc ttctcatcca 900 gttgtatgga cgacacgtca ccaatctgcg atggagaccc taatcgatcg cgtgacacgg 960 ccaccagtga tggcgtatcc tcaatatgac aagccattcg ttctgcatac ggatgcatcg 1020 gaagatgggc tgggtgctgt tctgtaccaa gaacaagatg gaaagcttcg ggtaatatgc 1080 atcgtgcacg ctaacaccag cagaacgcaa ctatcacctt cattcgggaa agcttgagtt 1140 cctggctctc aagtgggcga taaccgaaca tttccatgac tacctgtatt acgcaccatc 1200 atttacagtg tatacggaca acaacccgct gacatatgtt ctgacaaagg caagacttaa 1260 ctcaactggg accgttaagt agccgagcta gcagattaca actttgccgt caaataccgt 1320 ccagggaaaa gaaacatcga tgcagatagc ttgtcgcgcc ttaaagacat ccgactgttc 1380 atggaaaatt gcaccgagac ggccacaaaa gaagctatcg acagtatgct agttgctgcc 1440 caagcccaac accgtggaga cgtggttcag ttcaattcat taactgtcga tgaacaactg 1500 gtcagagaaa gttccgattt ggagaaaacc gagaatccca gaaaacccag catccactga 1560 ccactgacca cggccgagct acaagaagcg cagtgcaaag atagagtgat cggaagggtg 1620 ctagaatttt ggaaacgggg ggagcgtccg agcctagaag agaagaagaa agaatcacga 1680 gaagtgcagc tattgctgaa cgactggaag aagctggaat tgggagaaga ccagctcctc 1740 agaagagtaa gtggcgaaaa caagcagtta cttctccctc agatatacca gcgtctcgtt 1800 ctgaaagagc tacatgacga aatgggccac ttaggtgccg atcgcgttgt cgccctagct 1860 agggagcttt tcttctggcc gtacatgcag cgcaatatcg aacatacgtc accaaagtgt 1920 gttctcgccg gaaaagccgg atgcctactc tgaagacacg tgcacctatg caaaatatgc 1980 ctgcaagttc accgtttgaa agaatatcca ttgacttcct tcatctcgag gcaagcaccg 2040 gaggctataa atacatcctg gtgatagtag accacttcac ccgctacgcc caagcttacg 2100 caacaacaaa taaagcagct aagaccgtcg ccaagcatct atataatgat tttgtcctcc 2160 gcttcgggtt cccattttca tttcatcacg accagggaaa ggaatttgag aatgagctct 2220 tgaaggaact tgagaagctc tgcggagtcc gccactcacg gacaactcct taccaccctg 2280 aagggaatgg acaagtggag cgatttaaca ggacactgct cgcgatgctg agtccgccac 2340 tcacggacaa ctccttacca ccctcaaggg aatggacaag tggagcggtt taacaggaca 2400 ctgctcgcga tgctgagtcc gccactcacg gacaactcct taccactttc aagggaatgg 2460 acaagtggag cggtttaaca ggacactgct cgcgatgctg agtacgccac tcacggacaa 2520 ctccttacca ccctgaaggg aatggaaaag tggagcggtt taacaggaca ctgctcgcga 2580 tgctgaggac gctccctaag aagtttaagt cccgatggaa ggatcatctc aacaagatgg 2640 tatttgcata caattgcaca aggcacgact ccaccggata tgcaccatga ttcttctctt 2700 tgggcggaca ccgcgtatac ctattgatat aatattcggg aacgccaatg taaaaagccg 2760 agacgcggga acaaatcaac atcattacgt ccaacagtgg agaaaggcta tgtccttggc 2820 ccatgaaata gcaggacagc gagcgaccgt tgccgataca atcagaaggt acgtggaata 2880 gagcttgagc ctggcgccag agtcctagta cgcaatttat caaagagagg cgggcccggt 2940 aagctgagga attactggga agagaacgtc catgtaatac taaagcaaca caaggatttg 3000 ccagtgtacg acgtaaaggc cgaaaacgga gatggcagag aaagaacgct ccaccgaaat 3060 ttgttactgc catgtgacta cctgccggta gaaggtgctc cttctttgaa gaagaccaaa 3120 agaatcaagc agcgacgacc tcccacccga cagattcggc cagactccag cagcgaagat 3180 gagttctgcg cctgggaagg tcaagaggat aaacctggcg agagaaacag tagtctactg 3240 gaa 3243 // ID DIRS-15_NV repbase; DNA; NEM; 3220 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-15_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3220 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3220 RA Kapitonov V.V. and Jurka J.; RT "DIRS-15_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 409-409 (2007). XX DR [2] (Consensus) XX SQ Sequence 3220 BP; 888 A; 618 C; 643 G; 818 T; 253 other; atagatgcct ggaagaaaat aacttccgac aaggaggtat tgtccacagt aatgggactt 60 agaattaaat ttgccgaact tccaacacaa cacaatgtct attgctcaag gcttaacgag 120 gttgaaaaac atgctattta tagtgaaatt actaagctcc taaagaaagg tgtcattgag 180 cccaccgggc acactgatgg taagatcata tctgacatac ttactcggcc caaataagat 240 ggtagccacc ggctaatttt gaatctcaaa gcattaaacg ctttcacaga aaaaattcat 300 ttcaaaatgg atactttaaa cactgtttaa acacttcatt tttgaagtga ttttttttgc 360 caattttaaa aggggtaaaa cagtttgcaa gttacaaatt gtcaatgcaa ctggttactt 420 gagaataccg aaataattat atccatagca cacgcggtta aagagaaaaa ggtgaacgag 480 tgattttaag acacgggggg gggggggtag ggctaatcca attaggagag ggtatcacat 540 tgcaaaaata tcaggaatcc attatattat aactctttta taatttgtag aaatatggat 600 attttaatgt taaacgttgg gaagttttga actcccaaaa tacaaacccc caaaaagcca 660 gtgctactac cttaagttgg tcgaaaaaga ttgtttcata gcgtcagttg atttaaaaga 720 cgcttactac tcagtaggca ttgctaacga agacaggaaa tttcttcgtt ttcaatggaa 780 tgacaaactg tatcaatata cttgtttgcc caactgaaat tgcttaagcc accgctcacg 840 gtgttgcaca gagccgggca tgttgccttg ggctacattg atgatttgtt tctccaggga 900 aagtcttaca gtgaatgttt tgataacgta agcgaaaccc ttcatctgtt cgacgcgcta 960 ggttttgtaa ttcgcttgga caagtcggtt ttccagccat cacagagatt agtatttttg 1020 ggctttatta tcgactccgt gagcatgacg gtttcgttaa ccgaagagaa agcaaccggt 1080 gttttgcgga attgcaatac gttgttacgg catcagaagc cgacgatagg gaaactagta 1140 tcgtcgttcc ctggtgttat gtacgggcct ttgcattatc gtacgctcga aaaatctaag 1200 gctattaacc taagagttgc caaaggcgat tttgacaaat gtatgaccat ctcacatgat 1260 tctcgcagag agttacagtg gtggtgtgat aatctttgaa actcattcaa cgtgatctca 1320 cggccccctc ctaatgccga gcttaccaca gacgcctcca atgaaggatg gggcgctgtt 1380 tttggtgaag ttaaaaccgg gggaatgtgg acacaggaag agagagcaca ccacatcaac 1440 tatctcgaat tattagcagt atttctgggt ttaaaaacat ttctgaaaca cgaagctaat 1500 ttacatgttc gattaagaat tgataatagt accgcagttg tggtgattaa tcacatgggc 1560 acgagccatt cgacggcttt gaatgctttg tccaaatcaa tttggctatg ggctatagag 1620 cgtaatttat ggctctcggc tgcacatcta gcaggaaaat taaatattga agcagactat 1680 gagtcccgaa cacatcggtc ggaaaacgag tggatgcttg acacggatat actcacgaat 1740 gcaattgaaa agctaggggt tgagccttcc gtcgatttgt tcgcatcgcg agtgaataaa 1800 cagttccccg catacgtgtc ataccgccct gacccaggtg ctttggctat tgatgctttc 1860 tctattcaat ggagtgattt aacttttaac gcattccctc cttttagctt gatgcccagt 1920 gttctgaaaa aagtgcaaga ggatcgggcg atgggtgtac tagtggcgcc aatctggcct 1980 actcaggcat ggtacccaaa gctcaacaat aaaatgctgg cacagccggc tatagagctg 2040 aaagccagca agacgctgtt acgcctacca ggcaaaccgg acaccgtcca cccactccac 2100 aacaagctaa gcctactggt ctgccatttg tccgggcgta cctagagaac ctggacattc 2160 cgtcttctgc taaagatcta attgcagcat cctggtggaa cagcaccagc aaacagtacc 2220 agacgtacct tacacgctgg catacgttct gtgtagaaca aggactagat ccatttcacg 2280 ctaccgtaga gaatggcata gcattcctaa ctagtttatt tgataacggc ttaggttata 2340 gtgctttgaa cacagcacgc tcagccctct ctatcgttat cacggttcct ggattaccct 2400 ttggtacaca cccgttggtg gtaaggtttt tgaaaggagt attcgaactc aggcctagct 2460 tgccaaagta ctctcaaata tgggatgtgg gtatcgtctt atcgtacctt gacgagaatg 2520 ggccaattga gccattggac ttaaagtcgt tgacaatgcg actaacaata cttttatgtc 2580 ttctcacggg ccagcgttat cagactatta ctaagcttga cacaatgttt attcaaattt 2640 taccaaacaa agtaattttt tctatcagag aaacacttaa nnnnnnnnnn nnnnnnnnnn 2700 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2760 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2820 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngtacgta 2940 tcttagacgt tacctggaat taacgaaaaa tcttaggaaa cacaccaagc ttttgattag 3000 ctacgtaaag cctcgtaaac ccgttactag ctctactatc gcaaagtgga caaaacatgt 3060 tatgagaagc tccggtatag atactacaca gttctcgggt aataggccgg cgtccgtctc 3120 ttatgataaa gcgagcggta tttcattgag agacatactt aaggcgggag gttggtcaaa 3180 cgcacaaaca tttgccaagt attatgacaa acctatagag 3220 // ID Crypton-1_NV repbase; DNA; NEM; 1845 BP. XX AC scaffold_170; XX DT 12-MAR-2008 (Rel. 13.03, Created) DT 24-JUN-2008 (Rel. 13.07, Last updated, Version 2) XX DE Crypton-type DNA transposon. XX KW Crypton; DNA transposon; Transposable Element; Crypton-1_NV. XX NM Crypton-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RA Goodwin T.J., Butler M.I. and Poulter R.T.; RT "Cryptons: a group of tyrosine-recombinase-encoding DNA RT transposons from pathogenic fungi."; RL Microbiology 149(Pt 11), 3099-3109 (2003). XX RN [2] RP 1-1845 RA Jurka J. and Kapitonov V.V.; RT "First Cryptons from invertebrates."; RL Repbase Reports 8(3), 232-232 (2008). XX DR [2] (Consensus) XX CC This is a clear transposon-like element encoding DIRS tyrosine CC recombinase. It is distantly related to DIRS-type elements but it CC lacks reverse transcriptase and has 30-bp sub-terminal inverted CC repeats (pos. 1-33 and 1667-1698), and a 3'-terminal palindrome CC (pos. 1705-1832). After identification of other protein CC sequences closest to the Nematostella recombinase we found that CC they are also not associated with reverse transcriptase CC (Crypton-1_SP). Therefore, it is classified as a Crypton-type CC transposon (first reported in fungi ref. 1). XX FH Key Location/Qualifiers FT CDS 661..1473 FT /product="Crypton-1_NV_1p" FT /translation="MDKLRSYFDVDSPNKLQEFVWFNLCYYLGRRGREGWR FT GLTKTSLEFKHDDLEQKYVCIKHTEQSKNYQGGYKQKDQDYSDLRMYGIPG FT SPLDPIAALEKMLEKLHPECDALFQTPLVNFDKKGSCWYKNEPLGKNSISK FT LMPKISQKAGLSKVYTAHSVRALTITSLHQAGDDAKQICAITKHNNEQSLS FT SYIKDSSSSQKRACSGILIRPFVSSEIIEMENSNDCKQGSLSRAGGEMNVS FT FLSSTETNTSEAVMPNCHFSNCTINFNSYK" XX SQ Sequence 1845 BP; 582 A; 390 C; 383 G; 490 T; 0 other; tattattata actttggcga gcattgtggc gtattatacg ggctctaatg aacgttttgg 60 cgggctctaa tatattaaag cccgctgctc taagccaatg agagggcgag gaaattgcag 120 cgagccaatc agaaggaaga aggaattccc gcaattcatt caaaccgctc gtcgcatcgc 180 ttgccgtgtt tggttgtgtt ttgacaacta caaataaaca aacaggaaaa catggctgaa 240 cacgactcac aatcttctga gctcgatgaa gaggagctta agaaatggaa gaagattctg 300 ttcccaaaaa tactaaaaaa caaacatcct gggcgatgaa aaagttcacc gagtggtgca 360 cgaagcgaag tgttgaatgt gattttcaca gtatcagctc ctcggatctt ggaggcattt 420 tacgccgttt ctatactgaa gtcaaaacaa aagacaagaa ggacctctcg ccgagtgccc 480 taacgggtat cagggctgca attcatcgca caataaccag ccagccatcg ctcgtactat 540 aaatatctta aaagacgccg agtttctaca atcaaacaaa atgtttgaag tagtatgcaa 600 gtcctactac aagcgcggaa acccgaagcc tgacacaaaa gccccataga gcccggtgat 660 atggacaaac tcaggtctta cttcgatgta gactctccta acaagctaca agaatttgtg 720 tggtttaacc tttgttatta tttgggaaga agaggacgcg agggctggcg tggactcacc 780 aagacatctc tcgagttcaa acacgatgac cttgaacaaa aatatgtgtg catcaaacat 840 actgaacaat ccaaaaacta tcaaggtggc tataaacaaa aagatcaaga ctatagcgat 900 ttgaggatgt acggaatacc aggctccccg ttggatccaa ttgctgcatt ggaaaagatg 960 ctggagaaac tccatcccga gtgcgatgca ttgtttcaaa caccactcgt gaacttcgac 1020 aagaagggca gttgctggta caaaaatgag cctctaggaa agaattccat ctcaaagcta 1080 atgccaaaaa tctcacaaaa ggcggggctc tctaaagtgt acacggctca ctctgtcaga 1140 gctttaacta ttacaagtct ccaccaggca ggggatgatg cgaagcaaat ctgtgcgatt 1200 acaaagcaca acaatgagca aagcttgtcg tcctacatca aggacagttc cagctcacag 1260 aaacgtgcat gttcagggat tctcatccgt ccttttgttt ctagtgaaat cattgaaatg 1320 gagaacagta atgattgcaa acaaggcagt ttatctaggg caggcgggga aatgaatgta 1380 agttttttat cctcgaccga aactaatact tctgaggctg tcatgccaaa ttgtcacttt 1440 tcaaattgca caataaattt taattcctac aagtgacatc ccattaaact ttctatattt 1500 tgaaacagtt gtttcgtttg caaaaagaac cttaaacacg tgtatattta gcaacgtttg 1560 taaagtgaat tgaagctgta tttattaatt atgttataac aactttcaat gaataaatat 1620 cacgcgagtc acccgcgttt tccgatccta tttttgtttt tgtttctacg cttaatgctc 1680 ttcaaagtta taataatagt aatgtagttg atgttcttgg gcgtaaatat gttttgggcc 1740 cttctcagcg ctcattttag ccctcgctgc gctcgggcta aaatgagctc gagtcgggcc 1800 caaaacatat ttacgcccgc gaacatcaac tatattgtta tatta 1845 // ID DNA-TA-9_NV repbase; DNA; NEM; 234 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-9_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-234 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-234 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-234 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 234 BP; 77 A; 42 C; 35 G; 80 T; 0 other; cacctatttc aaaaaagttt gacgataaga gaatggaaaa tggaacaaag tttggccaat 60 aataatgttt ccttgtattt aaaattcgtt cattcattac aaggacctcg ctacaaactt 120 aatttagcct cactgaatgt cattaacaga tacaagactt gttttcccta accagtggtg 180 tttggcattc atcattttcc attttcttat agtcaacctt aattgaaata ggtg 234 // ID Harbinger-N1_NV repbase; DNA; NEM; 249 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; Harbinger-N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-249 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 159-159 (2007). XX DR [1] (Consensus) XX CC Harbinger-N1_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N1_NV CC transposon is characterized by 30-bp terminal inverted repeats CC and ATT or AAT target site duplications. XX SQ Sequence 249 BP; 53 A; 54 C; 81 G; 61 T; 0 other; gtgtagttcc agaaaatatc catacccccc ccccccccca ttgaggggat tggaaattcc 60 gggggggggg gggggggtgg ggggttcaaa cgcccaggaa tttccagagg ggaggggggg 120 taaaatgccc tttttcctta acagttactg tatttatttt tttccagggg gttggaaatt 180 ccagaggggt ggggggtcat acctccgacc ccctcaatag gggggtatgg atattttctg 240 gaactacac 249 // ID Copia-2-I_NV repbase; DNA; NEM; 3228 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Copia-2_NV autonomous DE LTR Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2-I_NV; KW Copia-2-LTR_NV; Copia-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3228 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3228 RA Kapitonov V.V. and Jurka J.; RT "Copia-2_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 382-382 (2007). XX DR [2] (Consensus) XX CC Copia-2_NV is a family of recently transposed retrotransposons. CC Copia-2-I_NV is the internal portion of Copia-2_NV flanked by the CC Copia-2-LTR_NV long terminal repeats. The consensus sequence is CC not complete and the polyproteins-encoding ORF is corrupted by CC mutations causing stop-codons and frame shifts. XX SQ Sequence 3228 BP; 1028 A; 572 C; 821 G; 807 T; 0 other; ggttatgggc ccaggacgtt ggtgaatagt aattgctgaa gttgtttaca aataatctgt 60 cattatggct gaaataacca agatcgagaa gctcaacggg aagaactatc agtcatggaa 120 atacaacgtg aagttgttgt tgatggaacg cggtctgtgg ggattcacgc agccagacca 180 ggagatagcg ccggctgacg atgccgctgc agccgctagg aatgcctttc gattgagatt 240 ggataaggcg tactctttga tcgctttaaa cgtggaaaag gacatccaga tccatatctc 300 gtcgattacc gacccactag ttgcgtggca aagacttcag tgccagttcg aatttgtctc 360 agtcactcaa atcgtcagac tttcacgaaa attttacgcc gcaacaatgg aggataacga 420 tgatctaatg aagcatctca cggctatgac atcgctagcg gagcagcttc gagagttaga 480 ggagcagatt tcatcgagga aattcgcgac tgttgtttta ggatcattgc ccgagtcgta 540 cgacaatttt ctaacaagtc ttaatgcgag gaatgctgga gaattagact gggagatggt 600 caaaggtctg ctgatcgagg agtacatgaa gcacaaggaa aaaatggaaa aacaacagga 660 gttagataac gctttgctgg cgcgaagtag acaaaatggc ggcgcgggac gtggtttcaa 720 caggacacgt ggcagaggag caaatcactt caaccggggc aatcgttcat ctggctcgaa 780 cccggatgca agatttcgag aatttaactg ctggaattgt gacaaaccag gtcatttaat 840 gagggattgt ccgaacaaca agagcagtcg gagatacaat gaccgagttc atgtagcgga 900 cgagaatacc gaaagcgatg acgatcgtga agccgtggcg ttaattccag cacgacaaat 960 caaggagtat ggtttatcga ttccggagct actaaacaca tgacaagtaa tttaaacgtt 1020 ctggaacatt acactgagta caaggagcca aagaagattt atttaggaga taatacagtc 1080 attttcgagt tggacgaagg caatgcgcat ctcaccacgt gcgatagaag ttgtgttaga 1140 gctacacaaa gtgttatacg tgcccaagtt aacaaagaat ttactctcgg tgcctgcaaa 1200 tgaccatgat gggagcagag gtaagatttg acagtggaaa gtttgtggtg gtgaagaatg 1260 gaagggagtt tttatttgga actttgttcg ataacaaact atacaaggct aatgtagagc 1320 acgccaatgt ggcgcatgcg caggagtcga caacatggca ctgtaggtat ggacacttaa 1380 actacgacta tctgaacaga tgaaagaaag acaaaatggt gaatggcatg gattatgcca 1440 catcttcgca tacaaaggaa tgtgaggcat gcattctggg aaagatgcaa aagaaacgtt 1500 ttccaacaaa cagcgaagaa gagaagagga gagctacaag gccgtttcaa gtagtgcata 1560 gcaatgtttg tggtcccatg caagttgagt ctaaaggagg gagcaagtat atgttaatat 1620 ttacagatga ctattcaagg tatgctacag tgtatttcat tcgtcacaag agtgaagtat 1680 tagccaagtt caaggaatgt gtgttatgtt gaaaaacagt ttggacacaa agtcgagatt 1740 cttagttccg agaaacagtt tggatatgaa gtgcagattc tctggaacga caatggagga 1800 aagtatacct catctgagtt tatagcgttt tgtaatgaaa agggtgatcg gacgggattt 1860 aaccacccct cattcgcctg agcagaatgg agtcgcggaa cgtttaaacc gaacaatcat 1920 ggaatcggct agatctatgc tataacactc aaatttgtca aaggatttct gggcagaagc 1980 atgcaatact gcagtctact tgcacaaccg gagcccgact gcagcattag acaatggaac 2040 accatttgag tgcttattta agagaaaacc aaatgtttcc catttgaaaa agtttggatg 2100 tgtgagttat gagtacgccc caaggtgtca gcgcaagaag ttggatgcca aagcgcgtaa 2160 ggcaattttc gttgggtatc ctactggagt gaagggatac aaactatatg acattgacaa 2220 gaagtgcttt gttgtgagca gaaatggtca atttgctgag gacagatttg atcattttga 2280 caggaaatca gcatcaggtg gacgatggac agcaggacga ttttgtgaca gatctagatg 2340 aggctgaggg tgtccctgag cttccaatac acgaggatct agcaggggag aatatcgaac 2400 cagtgggagc aaagactcca ataccaagaa catatgagga aaattttatg gaaggagtca 2460 gaaacctagg accagccaga aaaaggagag caccagctag attcagagat gaggactgta 2520 atttaactga atccttaact tctgaattgg atgaaccaaa gacagtaggt gaagctttga 2580 acagtgaacg gtgtgaacaa tggcaagatg ccatgaattc agagttttct tctctcctcg 2640 ataatgataa atgggaatta ataccacccc ccgaagggaa gaacattgtt ggatctaaat 2700 gggtgtttaa agttaagcgt gatgagaatg gctgtgttga ccgttacaaa gcaaggcttg 2760 ttgcgcaagg atattcacaa ttgaagggtg tggactatga cgaagtgttc tcaccagtta 2820 cccgcagtgc ttcgctaaga tcattgctcg ctctggcaaa tgtgcatgac cttgaagttc 2880 accaaatgga tgtgaagact gcttttctga acggaaattt agactgcgat atttatatgg 2940 ctcagcctga agggtttgta gatccaaaga gacctgacta tgtatgtaaa ttaaagaaga 3000 gcctatacgg ccgcaaacag tcagcacgct gctgaaatgc tactctggat gagtatttta 3060 tataaaaaat tatttaaaat gaggcagatg gatgcattta tatgaagaca ttatgactaa 3120 aggactagca aaccaacttt tcagagattg agagacatgc taggtattaa gaagattgtt 3180 tgattattgg actctcatct gtacatgttt ctataatttt tacattgt 3228 // ID Harbinger-N5A_NV repbase; DNA; NEM; 398 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A subfamily of non-autonomous Harbinger transposons - a DE consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP143; Harbinger-N5_NV; Harbinger-N5A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-398 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 164-164 (2007). XX DR [1] (Consensus) XX CC Harbinger-N5A_NV is a consensus sequence of a subfamily of the CC non-autonomous Harbinger-N5_NV. The Harbinger-N5A_NV transposon CC is characterized by 30-bp imperfect TIRs and 3-bp target site CC duplications. Its internal portion contains an array of the CC MSAT3_NV minisatellite (only the single unit MSAT3_NV is present CC in Harbinger-5_NV). XX SQ Sequence 398 BP; 159 A; 97 C; 94 G; 48 T; 0 other; aggttggttc tcactaggac gtaagcgcaa acgcaagcgc aacacaagtg agaatcggtc 60 aaacataagc gcaacacaag tgagaatcgg tcaaacacaa gcgcaacaca agtgagaatc 120 ggtcaaacac aagcgcaaca caagtgagaa tcggtcaaac acaagcaaca caagtgagaa 180 tcggtcaaac acaagcgaac acaagtgaga atcggtcaaa cacaagcgca acacaagtga 240 gaatcggtca aacacaagcg caacacaagt gagaatcggt caaacgcaag cgcaaacgga 300 agcgcaacac aagtgagaat cggtcaaaca caagcgcaag cgcaagaaaa tcaagcagtt 360 gcgttctgtt gcgcttgcgt ccaagtgaga accaacct 398 // ID Polinton-2A_NV repbase; DNA; NEM; 20836 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone Polinton-2A_NV DNA transposon - consensus. XX KW Polinton; DNA transposon; Transposable Element; Polinton-2A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-20836 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-20836 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-20836 RA Kapitonov V. and Jurka J.; RT "Polinton-2A_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 20836 BP; 5674 A; 5191 C; 4973 G; 4998 T; 0 other; agtagtaaca taggtatagg taggaggata taggaggaga gggggagggg tggtcatggt 60 gagcggtgac tgagggatat atggtaggag gtgtgacgtc acagccaccg tgagccaatg 120 ggagagcggg atattcggga ggaggtgtga cgtcacgggt gagctgggat tggcccgagg 180 cgccgcgacg tcacgggtga cgtcagggtg ggaaagagat ataagacgga acccagcgag 240 tacagcatca acgatttctt cgcaatgaag tgtttctgca acgtggaagt gaaacaagca 300 ggggtagccc taaagtgtgg aacacccgtc gacttcaaga aagaccaact ggggtgtggc 360 ttctacttca accctgacga cgcccagtcc ataaaagaag ctatccctga cggaactacc 420 atttccgact ttccagtgtg tgaccacggc ctcatctgca acgcgggtgt aagcggcggt 480 cagttttcca aagggcgtgt ttactttcag tgtccagtaa aaccacctaa caaaaatgcg 540 atcagttcgt gtgggcggaa ccacccaagg agtcagagaa gaagaaacca gcaccgctat 600 ggacacctcc ctccatgaag aagaaaaagg caaccagaag caggaagcaa gtcctcaccc 660 cccgcgtgga cgtaaacgca aacgtcctac ccccaccacc accaccgaag gttgcgtata 720 cggtggaggg cgaggaggag gaggaggaat aggaggaagc gacaccgatg gtgaagaaac 780 agaaaaagta gtggtggtgg acagtgacga tagtgacagt agtgacgtgg aagagtggca 840 taattacacc tactacgacg tagttgactc tgccaggggc ctacagggtg tgaactatta 900 tgtcaagaag gtagtgtggg acttaatggg ggagctgttg gagtacaacc aatacggagg 960 gaagggagga tggttaaatt gcttctacaa cgtcagggac gctgtcagag acaacactga 1020 cttcatgtgg gatggtttgg acagaatggg taaagtactt ggactcacta tgcgctggga 1080 ccattggttc accttcatgg aagagatggt gaaaggtggg gtctacccta gggatatggt 1140 agagctgtgc cgtgatgaag agctgcctga catattaaaa gggagggaga cagaggtttg 1200 ggaagtcacc agggacattg cgcaccgtat aggagaggaa gcccacctct tccctgttgg 1260 caaagcttaa aaagaaaaaa atagagactg gttctgtttt atttttagta ttttattgtt 1320 atcgttatta ttagtataaa aatgtattta gtggttatat atagagtaat aataataaaa 1380 aaagtgtttg ttgtgaaaga cactcagagt catagagctg attaacatct tgcaacttgc 1440 gaacattccg ctttgagtgg cggcggtgtc caacacattc gagcttttcg agtagttggg 1500 cttttttgag ccggaacttc gttttcaatt ttttatccag aaacttgtgg actcgtgcat 1560 ccaggtgtag cagcatgggt tggtacgtac gtacggcagc actgtaccct aattcgtagt 1620 cggtagggtg gtggtcatcg ttgtcgtcat cgggtgacgg tgcttgtgtt cctttgtcac 1680 aagtgtcttt ataatcggca taatctatct gcatgcgcag gttgtcgtac tccatgcgta 1740 aaatttcctc acggtcttcc aggttaccaa tttggtgcct gaaattggca ttctccagta 1800 ttgtagatgc gttgatggac ttttcgtcca gcaattccct ttctaaacca tacactttgc 1860 tacagagact tgagttttct gctgcgtagt cctcgcataa tgtttgtagc ccatcgcgct 1920 ctctctctaa ggctaccact tgcgcaccaa tgtgatccaa tttttcgcac accaacaggt 1980 tgaccgcctc caagtggtcg caaaacgcac tattaattgc gtttaggttt tcgtttaccg 2040 tagttcccca aggtagggca accataccgg tgttggtgtc ttgggtagca ggctgttcgg 2100 tcatcttgta tttttttgga gtcttggtta gactgtggag tattagcagt ctgctttgtc 2160 ttttatacct tttaaattgt ttatagacgc cgatgaggtc attagggatg tttctgattg 2220 gttagtggtt atattacccc ttaagatgtc tagacagtag tggtgaggtc atcagggagg 2280 gctctgattg gtttagggta aattgtggtt gctgggttga ccaatcagag gtctagatag 2340 tgggtgacgt catagttccc tatagtacat aggctgtgat tggagcattt ttaaaagaag 2400 tgttttattg gtccgtgagt actataaaag aggatgtatt cccactagag ttccagtatc 2460 cttggcttac aacggagatg gtaatggtaa tgatgacgat gacgagtggc ttagacgctt 2520 gttggaggtg tcaccagacc caagcgatac tgaagaggat gactgtctcc ccccagattt 2580 ttttcacgac aatcttgcgg actcacctca gtttgcttcc ctcgatgagc tgttcgacta 2640 catcaactac tatagtaacc tagaggatga ctgtgtgtct ttcggggacc ctttttttga 2700 cgttgctggt ccttcagggg agcaacaagg tggtggtggt agtggagtga agcgaccgta 2760 tgattccgat gacgaagagg aggaggataa tagtgataag gagagtgtag cgtacgattt 2820 gcgacaaaca tccaccaagc gttccactaa aatgcgtact gattgtaccg attacaaatt 2880 gaaggtcgat ttacctttgc gtgacaccat caaggaagct ttggaggact tggcgggggt 2940 gctggaccgg gtactcgacg acacgttacg tggggtccaa gggcacgact acgcacgtat 3000 caccattgat gctccgtctc tgaaaaaccc aattgcgtta ccatttatgc gccgccatca 3060 actcactcct cagcgtatca tgggtgtcat agagacggta gtgcaatcta atgaacagtt 3120 tgtgtttcaa ggtgattttg aacttcatgt gatccgtacc caccttccat tgggggctgg 3180 gaaaaacact gtgaagaatt cttgtaccct gaatacatgt gatttagaga cgtggaggaa 3240 ggggaaaaag agtatcattc gcattcgaaa cagtgatgaa ctgtgtgcgg cacgtgctat 3300 tgtggttggc atggggcatc tgactaagga ccctaactac accaagttgt acaaaccgac 3360 acgaagtaac acacgtaacc cttcgatccc cttgcaaacg gagcgggcca aggtgctgca 3420 ttccgaagcg ggcgtacccg agggtccatg tggtatcccg gaaatccaac aattccagcg 3480 ttatctagga gggcaagggt ttgaattgaa tgtagtatcc cgggaacacg ctaacactgt 3540 gatctactct ggaggcttac ctgatcctaa gtataggctt tacctatatt acgccaaggg 3600 tcactttgat tacattagta gcatggcagg attgttaggg cgttgctatt attgtacagt 3660 gtgcaaaaaa gggtacaata ataaacagca caagtgtgtg aacctgtgtt atgggtgcgg 3720 tgaattggat tgctcccctt tggcgccacc acccgaacaa gatcaccgtt ggaattggag 3780 gcattgtacc gagtgtaata ggtacttccg tacacccaag tgttttgaga accataagct 3840 tgtcaagcct agagggttag ttggtaagaa ggatgtgaac tcgtggtcgt actgccaact 3900 atatcataaa tgtgagacat gtggcaaacg tgttgacatg atagctaccc ggaaggaggg 3960 aagggagcat gtatgcgggg aatacaagtg ttccgtttgc aaggaagtgg ttccccctga 4020 ccacttgtgt tacgtgacgg taggcgctga tgcccttccc aagggtgggg atgacgatga 4080 tagcatgcgg attatcatct tcgatttcga agccatgcca ctggaacaga aacacactgt 4140 gaatttcgtg ggtgtccaaa aactgtgtga cacgtgtaag gggtggccaa tggaccgcct 4200 ggagtgtggt acgtgtggtc tccggaaaca cagttttgtc acagttcaag cgttttgtga 4260 ctggttgttt ggtgggagta atggtggcta cacatgtttg gcacataatt tcaaaggtta 4320 cgactcctac tttattttgg agtacctctt cgagaatggc attaaaccta atgtgatctt 4380 tactggcgga aaagtaatgc atttgaagat tgactcgcta aagattgata tgaagtgtac 4440 tttggacttc ttacaaatgc ctttgagtaa acttcctaaa gccttcggat ttgaccatgt 4500 tacccagaag ggtttttccc ccactttttt aataccgctg aacatcaaga ctatgtggga 4560 ccaatgcctg atttaagcta ctatgatcta cggagtatga aggaagagga tgctaacgct 4620 gtaaccctat ggcatcaaga ccaagtttcc cgtagtgtgg tgtttaactt aaaggaggag 4680 cttgccactt actgtcacca ggatgttgag gtgttaaaga aggctgtcgt tgctttcgat 4740 gaacttatca tggatgctgt tggcctccat ccattcaaga tagctattac catagcttca 4800 ttgtcgagcc gtatcttgcg ctcaaaattt ttggaggagg gagctattgg gttaattccc 4860 ttacgcggtt atcgtggcca tgatgtgcag tctttaaagg cactacagtg gttgaaatac 4920 gtggagcatc gtgaaggtga tggagtgttt atccaacacg cagggaacag aggggaagtg 4980 cgcttgggtg gacgaatcaa ggtggatggt tatgccgcag ccactaacac tgtgtaccaa 5040 taccaagggt gtttttatca tggttgcccg atgtgctttc aacccgatac tgtgaacccc 5100 ttgacgaata ccacaatgca ggagctccgt gaacacacgc gtgctacaga gctgcgtctc 5160 aaggccttag ggtataatta cgaggaagtt tgggaatgcc aattcgatgc ccaattgaac 5220 aatgatgtac aactacaagc ccttgtaggg gatgtggaac actcgagacc cctcgaaccc 5280 cgtgatgcct tctttggtgg taggactaat gccattcagt tgcattgtga ggcaaaagtt 5340 gaggagggtg agcaaataca ctactacgac ttcacatcac tgtatccctg ggtgaacgca 5400 acgtgtgagt acccagttgg acaccccgac gctattgtca ccgagaactt tgaggatctc 5460 catgtgtaca aaggattgat gaaaattcgc gtgttacctc cccgggacct ctttttccct 5520 gttctccaaa ttcgtgtcaa tcagaaaata atgttcccac tatgccttcg ctgtgccgaa 5580 atggaggggc aagggtcttg cacccattcg gatgaggagc gggcatttac ggggacgtgg 5640 tgtcacccag agatctttaa agctctcgaa aaaggttaca ctgtgcttcg tgtctacgaa 5700 gtgtggcact gggagaagtg ggagcgctta ttcgaggaat atatcaaaac ctttttaaaa 5760 tacaagcagg aagcttcggg gtggcccgca tggtgcaaca ccgactccga caagcagcgg 5820 taccttgatg agtacgaaca ccatcaaggt attcgtatgg acccgagtaa aatcgagaag 5880 aacccaattg catgtggggc aagttcggcg aacaacccaa tccaagacgc accaaatatg 5940 tgagcgaacc taaggagtat tttgacttgt tgataaacga ttgtgtcgag gtgaacgacg 6000 tgtttattgt gaacgaggaa ctcattcaag tccattataa attgggggag aagttccaag 6060 agctgaaacc acacaccaat gttgtagttg ctgctttcac cacatcgttt gcacgattga 6120 agctgtacaa tgtaatggat agactagggg aacgttgcct gtaccatgat acggacagtg 6180 tcatcttctt acaacgtcct ggggaatgga tgccacccct tggtgactat ctaggagact 6240 tgacgagcga gttggggcag ggggacttca ttaactgtta ttcttcaact ggcccaaaga 6300 gttacgggta tactacacac aatgggcatt ctgtatgtaa ggtgaaagga ctgcacttga 6360 acattcgtac agcggacatt gtgaacctta ggactatgct ggaactcttg aacgtggagg 6420 gtgaagagcg ccatgtgacg ctcccttatg ccatttaccg taatgtacag acgagaactt 6480 tacatacagg gccagcttat aaaactttta gggtagtgta taataaacgg gtacgccggg 6540 gcatgcgtac ctacccttat ggttaccacc tactgtagaa agtttaaaag accgttaata 6600 atgataataa ataaaaaaaa aagagatgtt tcatcactgg tagtgtgttt atttttgtat 6660 aaataaggaa ggatttaaaa ggaggtatca cttgcgacat gggttgcttt ggtgcggatc 6720 ctcttcaacc gcgtttcgat tgtcgtacgg cgttgaagcg catgcgttgt ttctttgcgt 6780 gttgcggggg taatattgac attcgagact cgcaactcga tggcaaaccc cccaacgaca 6840 gcaaaggtaa aaaaatatgg tacgaagaag agaaagaagg agagggtgga ggggggaaga 6900 agatgaccaa gaaagctatc gaccatcttc tttatcaaat ttattacgat ccggattgtc 6960 cagcagcttt ggggggagtg gacaaattac tccgagcggt acgttccaaa ggagtgagtc 7020 gtgctcaagt ggctgcttgg cttcggagcc aatccactta cacgctccat aaaccctaca 7080 ggcgccgtta ctcacgccaa cgggtggtgg tgaatggcat ggatgaacaa tggcaagcag 7140 atttgtgtga tatgcagtcg ttaagttcgt acaatgacgg gtacaaatac atactcagtg 7200 tgattgacgt attgagcaag tatggttggg ctgtcgctct gaaagacaaa acaggtcccc 7260 agattgttca ggcgttcgaa accattttca agggtgggcg tcaacctgag aagcttcaaa 7320 cggatgacgg taccgagttc aagaatcgga ctttccaagc gtttctcaaa tccaagggga 7380 tccattactt ctccacgcgt agtgagctga aggcttctgt ggtggaacgg ttcaatcgca 7440 ctcttaagac ttggatgtgg cgctggttta cccacaggga gacacgtcga tacatcgaag 7500 tgttaccaga gttgattaac aactacaacc attcctacca ccgtagcatc cgtcgtgctc 7560 ctgcggatgt agttacgtat gacgatgctc aggaggtgtg gggtattttg tatgggaaga 7620 aaaagacaaa ggtgaaagcc cagaagaaga gaccaccacc taaattttac gtcggagata 7680 aagtacggat cagtaaagtc aagcacgtct ttgccaaagg gtatatccct aactggacag 7740 aagaggtgtt tacggtggga cagcggtaca acgatccgaa acagaaagac tatgagtacc 7800 ggctccgcga gtacgatggg acatggttag aagggaggtt ttacgaaccc gaactgcaac 7860 ctgttcacct cgatgaggaa aaggaactgt ttcgcatcga gagggtaatc aagacacgtg 7920 gaaaggggaa gaaaaaagag taccttgtga agtggcgcgg gtggcctgcc aagtacaaca 7980 gttgggtgtc tacccagcaa gtgcataaaa tcgcatgagt catgcatttc accctcagtt 8040 gtctcatgca ccatgacgga tcaacagcaa ttctacgtaa cgttacccag caatgccatc 8100 caagatgctc tccctggtaa cactatcagt gatttttcca tacgaacgcc aaaaaccttg 8160 gacctacgtg agggaaaatg gcaagtgggg ctggttcagg ttatttaccc taacacatgg 8220 ttaaagtttc cacccgagga tagcgatatc tggatctacc acaaggtgcc tgagcccaat 8280 tggtacgcca gttgggctga caaaaacaat tctagttccc ttataccccc agaaaaaata 8340 aataacaaat ggacgcacat caaactagac ggcttccaag ccccaaagtg gcaccaagtt 8400 gccttcaatc tcaagaaggc tgttgaccaa ttcaacgctg gtagggctat agtgaggcag 8460 caacttggtc aaggtgatgt ggtggatgtg cttgtggcaa tagacacatt aacgaaacag 8520 accaatatag cgatagcgaa ggggaaccaa cttctcctac gaccacgggt agccatggct 8580 atagggttca agcaatggat ttcgggggaa tgggtcatgc aattacaccc tgacgatggt 8640 gtcctcccac ctgattatca gtttggccca accgaagcac acagaactct gttgaactgg 8700 atacccttta gttacgatgc tttgagcttg ttcccagggt ccggggactt taccccaccg 8760 tcatcccgtc cctttgcctc caaggagagt gacattacca tcgaggatct acaacccttt 8820 caaaacatgt acgtgtattc caacatgtct gaggggaacc tcgtcgtagg gagtgctgac 8880 accaacctcc tacgtgtgat aacacctgaa ggaaactatg gtgacgctgt ggaacggaat 8940 tttaccgcac cttattactt cccgacacgc actcaactcg tggatatgat ccacttctag 9000 ccgatgaaaa aggacagccc atttcattcc agtctggcgc tgttgtggga acattacact 9060 ttcggcgcac ccgattcgct taaacgatgg caagtgggaa gtatatactt accttatcta 9120 gtaacgatcg ggaggagggg ggtgaaattg gtgattttgt tgtaagaccc tcccagacgc 9180 ttgatctacg taatgggaga tgagaggttg gggttgcctc cgtcaactat caaccccact 9240 atgacatctt ctcgtccgac gagcacgaca tctgggttat gtgcaaacat ctagaccatc 9300 aaatcgtagc tccctcatca acagctgtac cttacctcca atggcaccgg gttgccctac 9360 gtccatcgaa gataaccaat tgggaacagt taactaccaa cttacggatg gctatcgacg 9420 actttaacat atctaggcaa gccacgaggc aggcgctaca acagaattat ctggacctag 9480 aaatggtacc tgatgagtac aacgaaaaag tggtgttcaa agtagggtgg gggagccgtg 9540 tgttgatgcg gaaacgactt gcggcaaggc ttggctacac cgacgccagc ctctccgacg 9600 agggaccctt ctacgctaca ttgttacccc caaacgatgt agggggtgtc tcccacccaa 9660 tagtgataag gggtgccctc ccccccgact accccatcac cggaacagag gccccaaatc 9720 taccggaggg aatcgttagt ccacatctgc tacccaaatg gactgtgttc gattgctccc 9780 ttcctcaatt gccaaacaat gcgaacaccc gcgagtaccc ctccagggac catcccgtct 9840 ttgacatcaa atctttccaa aacatgtact tgtactcaaa tatcaccaac aacaactaca 9900 tcctagggag ccgcacccgg aatgtattac gcgtgatggt agacaagggt gcgcctggtg 9960 gaaggggtgt ggaacgggtt ttcgaccgcc cattctattt ccctttacgt ctagaactca 10020 tcgacgaaat ccatatctat ataacagacg atacggggag aatgatacca ttctcatcgg 10080 ggagctttga ggtgacagtt catttcagac gtacgtcatc atcatgaata ttataggtga 10140 tatcctcggt ggagtagctg gaactctctt aacccctctt cttggtcctc tccttggtgg 10200 ccaaaaagaa agtggttccc atgcaatagc tggtactaat acaataagag ggtacaatat 10260 cagcaaccca cctcctttcc ttgattggga gcagcgcggt atggggagcc ctgcgttcca 10320 aggggctccc attggacaac tggggtgggg gagcagtcac ggtgaagcgt tcagcggtta 10380 ccctgtggta gtacaaacag gtggtggcct cagcccactc cacacagact tacccttcga 10440 cacctcaggg agcatcccca tcacacattc aacgtacgaa agcgtttccc ctagcgctaa 10500 gaaacaaatc tcccatagag tgaagattat gccgaaaact gttcctattg ggactgtaac 10560 cacaaaacca agaccacaaa gtcaccgccg ccaccgccgc cgtagagtca caccctccta 10620 caaccgtcaa aggggtgggg ccaggcccat ggatatcttc gactagggaa aaaaaaaaga 10680 taaaactacc tactggttac gtcacatccc cagttaacgc ccacccttgc cacgaagaag 10740 agctctctct accctctatt gctgctccac catgagtgac gccactgtct tctcagggtc 10800 acaacaggtg gcaaacccta gtgtgggttt gttcacaatg cccgccacag acgtagcctt 10860 aaaagatggt cattttatcc catacacccc tactgacgaa ggctccgagc acattgaatg 10920 gtacattcac cccccttcca cttacgttga tctcaagaaa acacacatca aaatgaaagt 10980 gaaaattacc aaagccgatg gggctaacct cactgccggc gagcatgccg cctttgtgaa 11040 caatgctggc catacaatgt tcagacaaat cagggtagaa ttgaataaca gagtcgttac 11100 cctgcaaacg gactcgtacc catacaaagc ttacatcagt aacctcctaa actacaccag 11160 agaaggccaa gaatcattct tggtctgtgg tatttggcac aaagatactg ctggtcacat 11220 ggacattgct gaagtgtcag gagctggggc aacaaacgaa ggtttaaaaa aacttgctag 11280 ctacacggct gaaagcgctg aagtcggaat tatcattcct ctagacgtcg acatcttcaa 11340 atctggtcgg tacctattga gtggtatccc aatgaaaatc aggatggaaa tgtccaaacc 11400 aaattttgcc ctcatggggg gcgggaaatt cgtaatcagc ccaggctcaa ccctccgttt 11460 gtatcacgtc acccctttag aaacgattgc gctgggccac gccaacgaac tgcttcacaa 11520 caatttagcc aagtaccctg taaccacagc tgtagtcaaa acagagcagg ttgaaagtgg 11580 gaaacacacc ataaggttca atgatctatg gaatggtctc atccctaagc gaatggtgtt 11640 tggcatcgtc actaatgagg cctatgctgg aagttacaca aagaacccct tcaattttca 11700 cttcccaaac gttactaaca ttgaggtgcg agtgaatgga aacgaaacac ccatctcaaa 11760 catcaaaaac attgctgggg atgctataga tttgtactac atgatgcacg agggggtcaa 11820 tgggcaagca gcccgcgcaa aaggtctgaa catctcgcgg gaagagtatt ttggtgggta 11880 cgggttggtt gtctacgact tcacacccgc aggaaactca tcatccgggt actttcagcc 11940 acagtataaa ggcacggtgt cactggactt gaacttcagt acagctccta ccgtggtgct 12000 cacagtagtg ctgtacgggg aattcaacaa caccatggag atagataacg gacgtaatgt 12060 gatgtacgac atccaaggat aaaccagaaa gagaaaaaaa gaaaaaaaaa aggagacatg 12120 gatgctgatc tccaactgga tgcaatgtcg acaggggaat tggaggctat ggccctcagt 12180 gatcgttgca tagaacccgt gttcgaaggg gtactccctt cagacctcct gcctactacc 12240 atcccagaaa atgggtatgg atacgcggca tacattataa atgttgaccc aagtgacaag 12300 cctggcagcc actggttagc agccctcttc acaccagacc gctgcgaatg gtttgacagt 12360 tttggatttg gtccagaagc gtatggtcag gtgatggtga acttttgtgc cctgcgcccc 12420 cggttgataa cgaacccata ccgtcttcaa gctttaaact ctgccgtgtg tggccagtat 12480 tgcctgttct tcttgtgggg aaactttaag ggaaatcatc tcgaggttta gtaaccacca 12540 caattggaac gatcaagtag tgtgttcatt tgtacacgat actttccatg tgaaagacgt 12600 accacaacac ggtagaccgc accgacgttg cccttggctt cagtgtgcta ccagacaaca 12660 tcatttagtg tacggggggt gacttgtgaa tgtggtaata gtgtagagtt aataattaca 12720 ataaaacatg tgttgggaaa cctgtgtctt gtgtcgtcat ttcctactgc ttatataagg 12780 gggaaataaa gtggttggca ccaaatcaat tacgtctagg atggaggacc ggcggtttcg 12840 ttgtccctgt gccattatgg tcgtaggtcc aagccaatct gggaaaacca catgggtaca 12900 gaacttgttg cgacaagccc ccagggcttt cgataaacaa ttccgtaaaa tagtctgttg 12960 ttacggtcaa tggcaaccca aatacgattg gatgcagaaa aaattggggg tagaatttta 13020 ccaaggattg cccgactccg tcaccgaact gtttgggaaa cacgacaccc ctggtttgct 13080 catcataaac gatctgatgg accaaatcga taaggcattg aaaatcttca cccaagaatc 13140 ccaccaccac gacatcacaa ccatatttat atcacagaac ctattccctg ggggaaaatc 13200 acgcaccgcg tcgatcaaca gccattgttt tgtgatattc aaagacccta ggaacaagtt 13260 gggggtgcgt acgcttgcgc agcaagcgtt tccggggcaa ttaaactatg tcatggacgc 13320 ctacgaccaa gccactaaag agccctatag ttgtttgttg atggactttc accaaaaaaa 13380 ccccgatgcc ttccgtctcc gttctcacgt cttacccgac cagtgtccca tgtacgcata 13440 cttacccaaa gactctaaag gtaaaactgc ataaatagaa gttagaagag aaccagtacc 13500 tcagtcaacg atgcctaacg tacgaggaag aggtccaagg ggtgggtgga ccccaacggt 13560 acgcttgcgc cctacggcaa gcgcaaggcg ggacccaaca gcatttgccc gcggacggta 13620 cagagctgaa gcattactca atcaaccatg ggttgccacc acccacacca cccgagggaa 13680 tctcccccct ctcttcacct aggggatcta gggtatccag cacatcacca tcaccatcat 13740 catcgtcatc gtcatcgtca tcgtcatcac catcaccatc accatcacca tcaccatcac 13800 catcaccatc accatcacca tcatcatcat catcatcatc gtcatcgtca tcatcgtcac 13860 catctttatc actggcacca acacttacac ccctatcctc ctcaacccct atgggtctac 13920 ccgatatatc tccgccaaca tccccctgga gggtgaacag tgacccagcc agaaagcgga 13980 aacggagagt gggtacccca agacggacgt cgagcgcctt gggacgcatt agtactaaga 14040 aaaaaacacc accacgtaac ccccgtgctc tcctacccat acccctacca tatatgggtt 14100 cacccgtccc ctccatctcc ctttcccctc ccccatccga agcatctact attgactatt 14160 tgtcaggggt aaacctccaa ccatcaccac caccacgtac cccctccatc cgatcacgct 14220 catcaggcca cctcagcacc ccctccacac ttacactggt gagaccaagg gggtcacgaa 14280 gaggaaccag gaccccctct acaccttcta caggaagcag tatcagcaca ccctccctcc 14340 gtgggagacc aagacgccga ggtggggatg gaggcggtga tggcggggga gggggtgggg 14400 gcggacgtgg gggtagaggt aggggggcga gaggtggaag aaccaccaca acaacgaaaa 14460 ggtgcgtcac ccgtaaaaga cgtcgtgcgg atgggaccaa tgttaccaag acaaattgtg 14520 tcaccaccca acgtgtagac aaccaacaag ttggcggtgg tagcgctctg ggaaacttgc 14580 catggagatc agtttgggtg tgaccctata aatagcagac acccctatgt caccacacca 14640 ttttactatg ggtacccgtg tgagaaggag ccgaacccgt tgcgctagac ggaaagcagt 14700 gtgtaaaaaa aaatggaagc cctaccgtta caggcagcgg ggtggaaggg tgagtcaacg 14760 tggtagaggg ggtcggtctt tcggggaaat gtttaatggc gcctttaccc aacctatggg 14820 tgaaatgctc aaaagggtgt tttagtggtt gggaaccgaa taaatagcaa gccccctaaa 14880 ctacccgcat cattctacca tggccctgag aaggagcgga cgctttgcaa ggaaacgtac 14940 cacacgtaaa ccccgtaaac gacgtacccg taggcgctta aacgttagta aggtaacgca 15000 acagggtggc cgttaccgga aactctgggc aacaggacgc aaattggaca agattgaccc 15060 tgcatggttg tgactctata aatagggaag gtaccccatc cccaatacca tttcaccatg 15120 tcacgccgaa tgaagaggaa cgctaagttc ctgaagaaac tctcggatac caggggtagg 15180 gcgagacaac atcttttaaa aaaagctacc ggtgagcaag taaacgccct gggggaagtt 15240 gcccacaacc tattgaaggg taacattccc ctcacaccag cccagcggaa tagactgagt 15300 gtccacaaga accggttacg taccttggca aacaaaagac taacagccaa ggagaggaaa 15360 ggggtactcg taagccaacg aggtggatgg gctgtccccc tcttactagg tgccctaggc 15420 gcaagcgcag ggatacccct gcttaacaaa ctcattggca aaatataaaa aaggctataa 15480 atagagtagg agcaaacgca aaccccttca gttcacccaa ggtagccacc atgtcaacac 15540 aaaaaggggg agcctatcgc atggctatgg taccccaaca cgtgcttgac ctactcatga 15600 ctaaagagaa cactaccatg ccacctcaac tacgcattgt ggcacggcta gacaaagata 15660 tgcggaaaat cttgaacaac aaagcattac cgctggagac caaaatacgc ctctacaaca 15720 gtgcgttaaa ccaatggcta aattggttac aacaagccaa agacagtgga agaagcgtaa 15780 acagagaggc agtaccccaa attggggcac cccacggcct cccttcacca ccaaacagta 15840 caccaagcac atcccgagca atatcacatg gcgagctagc cctaccaaca ccacccttca 15900 gcacaccaat gccaaaacca aaaccaaaaa agaaaaggcg attgcttact acaccatcac 15960 cccatcatcc cttggaagac tggatgcccc ctacaccaac atccaccccg aagccaccta 16020 gacgtgtgtc gaaacggata gccaaaacaa cgcaaagatg ggatgacctt taaaaaagac 16080 aatacactgt gatgtacggt tctccttttt tttattttaa tagcaataaa acaccttaat 16140 acatgtgtac tgtagtcact ttactaacta atgtagtcac agtagcacta actccctctg 16200 cccactccct ttcttttctt tctttccccc ctttacaatc tccacaccac cacacacttc 16260 atgcgtacac ttccgtatcc tactacattc ttctacattc ctttggagcc acctgcactc 16320 gtcccctttt tcgtggtaat gacaggcctc agcatcggaa aacatgcaca cccggcgttg 16380 attggtttta agccacttgc caaacaagta tacctccgcc ttgggacagt gcttaggggt 16440 gtcggagaag gttgaataga agtggtgccg acaagccctc tcatgggctt ccgttataaa 16500 gtccacgtga gcattgctat agtgctcatg caactcttgg tacttggggc agccaaacac 16560 ttccaagttc acaaaaggga tgccgagacc cattagaagt ttgcgctcgc agttaccatc 16620 cttgtaggcg acgatccctc cttgaccata gatgtcgtac caccccttga cgatacgctc 16680 aagctggaca tggggaacgc tggaccctgg ggcgatatca aaattcatcc ctgtgacaaa 16740 ccgggtaaca aagcgtactg acctcctatc tttttgggag agctcgctgt atctcattgg 16800 gaaggtgaag tgccgaccaa ccacttcatc attgtgatgg aagaatccca cttccttgca 16860 aaaaaactcg ccatccacat aaaacccatc ttcatcaaga atgcatgtga tgttctggaa 16920 gaccccctct tgcgcaacac aggggtcaaa gggaccatac agtacatact tggtatagta 16980 tgttatgcct ggtatcagtc cccactcttc ccatccactg acccatcttt tatcctcttg 17040 ctctccacgg gaatctttcc ctgtagccat tccgtaaatt cccaacacaa taagaaaata 17100 gtaacacgtg cgccaaaaaa gagcccaact ccaaacgaac acccccgggt aaacgaggtt 17160 aaagcttcct cccacactgg tgccatgaga atataaagaa acacggaagc aaggtgttac 17220 ccttttatac actcaagaaa cccaccacgg accaatcagc attgaaaata taacgccaac 17280 caatcacaca ctccgttcta tcacaaagaa acactctaag gcaataagag agtagcatcg 17340 taaacctaaa ccaatcacag cacaattccg ccacgacgtc agtactgacg tcacctaccc 17400 caatagtata aatcacaccc gccagccccg aacactctca caacagcaca accatggctg 17460 agagtaaaat agacctagag cccacctaca aaaagctttg cgaacaagcg gttaacaact 17520 acgaggactt ggcgtgtgtc atttgccaag acggtaggat taccagtaac acatccgtca 17580 ccctactcga tcgtctaccc tgttgtggac aggtatgcca ccagcaatgc ttctggaaat 17640 gggcccacta ccaccgcacc gaagctgtta cctgcccaca ctgcaggcat gtcttcccct 17700 cttccaccaa agaaattgtc ctgtgggttg acagtaactt taagccaaag tacgacgacc 17760 accctgctga gcaaattatt ttagaggaga agaccaaaat gcaaccagcc tttgaccggt 17820 acaaaaaatt catggcactc taccctgccc actatagagc acgtttcttt attggagtga 17880 tgtgcgacaa gtgtgcgccc attgcctaca caatgtgcga gagggaaaac cgccacgact 17940 tcgagcttcc ccttctgctc ccacgccgtt ccccagaccc gaaatctaac caatacaaca 18000 acgacattgc caagtacggg gagtggcttt gggacgtgga cgccaacaac gagtaccatt 18060 cgctcaggga gaacgtcatc cctccaccac ccccttgagg gcacgacaag agaccgcgat 18120 acgaaagcga tagaatagcc ttcatggaag atatcaaagt cgaactcatc caaccaggga 18180 tgcctgcagc gctacccttc attcacgctt tcaaagaatc aaccgcagcg tggaactttt 18240 gcccaaacgg aagttggtca ttgaaacact acgatgtctc cgccaaggta ccaccaccac 18300 cctatggcca ttgcctgtgg gaggagtacg cacgggaccc tatagcctgg gtagcacgca 18360 accatccctg gaaccgcgac ctggaacgca atgacgatac cgacgaggaa acggaggatg 18420 aggaagaact ggttggcttc cctcccatga cttgggctga acgtggtacc caagaattcc 18480 gtttctaaca aattgcactg accctccaac gagtacgcga agcgcaccgt gctaacagaa 18540 caaacggtga atccgacagc gatgaggagg ttgacaggga agcagctaca ccaccaccca 18600 accaacaaca ggtgatacgc cagaagcggt taagatattt actttacatg gtgaacttgg 18660 ttggaatggc catagaggga acgctgatat tactgatagt attggtgggg tgcagataca 18720 tctaacacgc tgtttccctc ccgcaggctg tggacccccc aactcccctg caaagcgacc 18780 aagtcgtcta caacttacgc aggggtagga cggtacaccc cttcccatcc tcccgtcaga 18840 cgcgacgcag aagacagtca cctaacccct tctcacaagt acccaccacc caacgcacgg 18900 aggagcgcag agaacgccta atgcaacgca gaggacaggc agccctacca cccctgatcc 18960 tttccctcta gaggaacaaa cccctcgcca ccaccaccta ctgcaacgtc gcccaacccc 19020 ttcctacaag gaccagaggt agccctgcac gtggaaatct cctcccctcc ggaccaatcc 19080 tttatgttgg atcgtttaac ggtaaacgat tccccttctt ttgtagaccc aagaacctac 19140 gaccaggtcc aatccttcat aaacacaatg gcacagcaac gtgtcaacac cctcgtggca 19200 gaaaacagtc ccagaccact acctgaatca gcatacctcc ccacggatga ggatatagaa 19260 aggtttcaac gctttgttac ggacttgata atgaacactt actacgaaga tgattaatag 19320 ggagtagtta tattgtaatg agacaacttt tttcttttac cacacttttt attaaaaaaa 19380 tactcaaaaa ctacagatat aagactaatg tccttttttt tttttaacgg tataggggaa 19440 cgaatccaca atgctcttgg caacttcgtt gatgagtttg aaggccatcg ttctctccct 19500 cctcatcatc tctggtacac atgtatgtcc atccacccag tcttgcatga ttattatcat 19560 ctcatcaggg gtgaggagct ccagtgtccg cgcgatgtac ggctcccagt gagcacctaa 19620 cggaaccctc agtaccctgg ccaatatttt gcaaccgtgc caaatcactg gtcccgccga 19680 cgactggaca tggtggaaac acctgtccca acgcttcctg taacgctttg tgtcggtgaa 19740 gaagcattcg tgcacttcac ctacaaggtg gtagccaaaa ccgtcgaggg atacatgctc 19800 aaaggcgaag tagttgatca cttgtaacat tctcccagcg tcacggatgt agtggttctc 19860 ttcttcttct tctccttctt tttctttaga gtccttttct agtggtggtg gttggattgg 19920 atcctcttgc aaactcatca taaactcgca gtacgaaagg tgtgcggcgt gaccgtcttc 19980 ttctctcttc ttcctcttgg catcttcttc ttcttctgtt tttccgctgt tggtagcacc 20040 atcgacaact tcggcactgg catcttcccc cactgctgct tcttctcctt ttggctcctt 20100 cttctcttct tctttttctt ccacttgttc ttttggcttt cctctacccc ttggcctgtc 20160 gctgcgtatg tagtcatcca gttctttaaa ccacctcatt cctttaatga cctcgttctt 20220 tccttcacct tcctttcttc gttttctttt gcgtgttcgg tggtggcctc ctcgcaaatt 20280 tgacatctgt acgaacggca tgggcatcta gccttttttt cgccctctgg ttctccgagg 20340 atctcagtta aaattgtatc cctgaaggta ggggtgaact tttttgtatg cctctccagt 20400 agcgtttggt attctttttc gtttagtggt actgtggtac catcctctaa cgccaactcg 20460 taatcgtact cctcgtcggt aagggtgcac atgttgatgt tcaattcgtc tgggcaacct 20520 gggtcgtgtg ggtggcctgg gccgtttaag tcgttactgt ttgggcagca gttatccgcc 20580 atattctttt tttacttcgt ctggtggacc cggtttatat ctcttcccca cccagacgtc 20640 acccgtgacg tcgcggcgcc tcgggccaat cccagctcac ccgtgacgtc acacctcctc 20700 ccgaatatcc cgctctccca ttggctcacg gtggctgtga cgtcacacct cctaccatat 20760 atccaccaat cacgctcacc atgaccaccc ctcccccctc ctcctatatc ctcctaccta 20820 tacctatgtt actact 20836 // ID Mariner-5_NV repbase; DNA; NEM; 1936 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-5_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Mariner-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1936 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1936 RA Kapitonov V.V. and Jurka J.; RT "Mariner-5_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 614-614 (2007). XX DR [2] (Consensus) XX CC This DNA transposon belongs to the Pogo group of the Mariner CC superfamily. The 5' terminal portion is not known. The genome CC contains just a few copies of Mariner-5_NV. XX SQ Sequence 1936 BP; 610 A; 387 C; 463 G; 476 T; 0 other; gcacaaggaa actagcagaa aaaatacaat tgcgggaaga cgcaagtaat ctcaatcctg 60 aaaaacaaag acagcatttt agaggcatgg tcaaaaaatg ctaccagtgc ttctaaacga 120 actacctctg agaaattcga gaaaatcaat aacttactat gggattggta tgtgagagct 180 cgccaagcaa atatcccagt cgacggacca atgctcaggg aggaggcaag aattatcgcc 240 gaaaagctag gggatactac attcaaaggc acagatggtt ggcgctcaaa gtggaagcaa 300 cgccacaatt tcgctcgaat gaacattgtt ggtgaggagg gggatgtgcg tctggaaacc 360 atcgaaagct gggacgagag agttaaggag ctaatgcgcg attatcagcc atctgacgtg 420 tggcatatgg atgaaacggg cacaatgtgg aaggcacttc ccgataaatc cttgtcagag 480 aaggggaaac ggtgtaaagg gggaaaacat gccaaacaaa gaattacagc agctactttt 540 cgtaaatgca gcgggggtgg ggggggggag gggggaagaa cagccaatac ttattggcaa 600 aagcaaaaag ccacgttgct ttgcaaaact gccatttccc atccatgtgg cacccagtac 660 ttttacaatg gcaaggcgtg gatgaagtcc gacattatga tcactgttct gaaaaacgaa 720 aagatgaaac gtgcaggtcg gcatatcatt ttgtttattg acaatgcgcc atcccaaaag 780 tttgaaaaac atgttctcaa acatcaaggt tgagttcctc cccgcgaata caacttcacg 840 gacccagccg ttagacgctg aaatacgcct caggcgtaag cttttgcggc atgtcgccgc 900 ggcgagatta ataataagaa atccgccagt gaaattgtga agggcgtcaa tcttctaatg 960 gctattaggt ggatggcgaa tgcatgggac gagctggagc ccgagatcat aacaaggtgt 1020 ttaaagcacg tcggtatgta tcctgaacat aacgaaacaa tggatttcga tgacgatccc 1080 tttgctggcg aggagatgtt agagatgaaa gagctcttag ctaaaatctc ggaatcttct 1140 ggggagggtc ttgatctcga cgaacaggca agcaccggtt gatatcacgt cgccgaactg 1200 gaggaaggat ctgcgcctct aaaagacgac gatatcaacg aagaaaacga tgatagtgaa 1260 gatgagattg aggacgcgga gttcgacatt cccctcaggc aacctgaaat tgcaagcgcc 1320 gaaggttgtc ttatccatgt aaataagtta ttggactttt ctttgtggca aaacaatgag 1380 aagcttactg cgctcttcgt agccgccaaa gatattctca ttgacgaaaa gcttaagtcc 1440 tcgatgcaaa cgagcataac gagctacttt gcgtagaatt aattgatgtt aagtataaaa 1500 aacaactcac tctcatgatg agaacaatac ctcgttttgc aaacattttc ccaacatggt 1560 tccatggatt tatgagtctg ttctttcaag tttgttttgt tcacagttac agttattagt 1620 gattgtataa atattaaaga aaaatgaatc tgtagaaata tggttgcgtg ccgttgaaat 1680 gcactttctt tgtagatgtt ttcagtcaaa ttttcccatt aaaatcaagc aataaaccaa 1740 aatattacag cgttgttatt atcacgaaag cttttagatt ccattttaat taagctcccg 1800 taagcgacca acacctattg ttcaagtttt tggcgcccag tggtcgctta tgagagcaag 1860 ctctcgtaaa agaccagctc cgttaacgac cacaattttc agttcccaag gtggtcgctt 1920 acgagagctt caactg 1936 // ID DNA-4-2_NV repbase; DNA; NEM; 1387 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-4-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-4-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1387 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1387 RA Kapitonov V. and Jurka J.; RT "DNA-4-2_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 401-401 (2008). XX DR [2] (Consensus) XX CC DNA-4-2_NV elements are flanked by 4-bp targets site CC duplications. CC Termini of DNA-4-2_NV differs CC from elements that belong to the Chapaev, Kolobok and piggyBac CC superfamilies, which CC are also flanked by 4-bp TSDs. It is likely that DNA-4-2_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-4-3_NV. CC In addition to 4-bp TSDs, these transposons are characterized by CC the 5'-GGC and GCC-3' termini. XX SQ Sequence 1387 BP; 432 A; 249 C; 253 G; 453 T; 0 other; ggccttgcgc acggtgttgc gcaagcctgg ctcaacaaga aatttctcga catttcgttt 60 tagatttact gctatttctt aagtattgcg ttatacgtat ccggaatttc ggatataaaa 120 gtttgattat cgtagttttt aaaaatagtc atactatttt tctaatctaa tagaaaacct 180 cgatattttg ttgtcgaagt atggacgtta tgtagttatc aacaactgct gcgtaacatt 240 tgaacgctgc aaatgtgttt tgcctttttt gcctagtttt gccctatcgc gcaatttttt 300 tgccctagct tgtttttgcc ttttttgcct tcttttgccc tatcgcgcat gtttttgccc 360 tatctcgcac ttttttgcct tttttgccct atcgcgcact tttttgcctt ttttttgccc 420 tatcgcgcgc ctctctagaa tcctgctata aaaaaaaatc aaaatttaat ccagcttcgg 480 aaaattcaga ttatgggagc tctatcattg aacaagttag gcttctaaaa ttattttcgt 540 tatagaatgt atatttctcc atgctttaaa gtttgcaata ttcaaactcg aacggggcga 600 attcttgtct tgcataagaa gatgagaagc aagaactgaa agtagacaaa tacccgagga 660 gtttaattat atcaacaggc tgccagcagc cattcctttc ttctgaaatt acgtctagaa 720 aagtatatat attattcgca cttgttttag atttcgataa tattcgggat aaaaagcaca 780 atgaaaatgc aggaagagcg cgatggcaaa ataaggcaaa aagggcaaaa aaaggcaaaa 840 aaggcgcgat gggcaaaaag ggcgcaatgg gcaaaaagca aaagggcaaa aaaaggcgcg 900 atgaaggcaa aaagggcaaa aaaaggcaaa ataaggcaaa aaaaggcgcg acgtaattcg 960 acgttttgtg ttttctattg tcgaaaaaaa ttctaacgct gcttatcgct cccgtctgtt 1020 cacatttctt ttcctctttc tataaaaagg acagcatctt aaagagaatt tcaagtgcat 1080 tccatttatg acattgatca aactacaaaa gaaaaagttt ctttttaatt agcaaaaaga 1140 tggagcaatg ttcataaaaa atgggcttta aaacggcccg tttttatggc actgttttta 1200 ttttgatata ttttttaatg tttttgaaat ttttactatc tcaaactttt gattcgagat 1260 gcacattaga caaaggttat ccaaataaaa taaaaagtgt gtagctttct cgagatcaaa 1320 gttataatca taaacctagc gttataattt ttgttacgct ctgatgcgca acaccgtgcg 1380 caaggcc 1387 // ID Crypton-2_NV repbase; DNA; NEM; 2906 BP. XX AC . XX DT 07-MAR-2011 (Rel. 16.03, Created) DT 07-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Crypton-2_NV non-autonomous DNA transposon - consensus. XX KW Crypton; DNA transposon; Transposable Element; nonautonomous; KW NVREP229; Crypton-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 327-2374 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 327-2374 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2906 RA Kapitonov V. and Jurka J.; RT "A family of Crypton-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (07-MAR-2011). XX DR [3] (Consensus) XX CC Copies of this transposon are involved in satellisation forming CC numerous duplications. As a result, it is difficult to define CC termini of this transposon. It forms a distant branch of CC Cryptons, including some other elements from the hydra and CC anemone genomes. XX FH Key Location/Qualifiers FT CDS 622..1767 FT /product="Crypton-2_NV_1p" FT /note="lambda integrase/tyrosine recombinase." FT /translation="MAREIAAKVRSIVGAAAPSGSYLLDAFGDVNRVWDRF FT FLPRREKGPDQLKATTLRGYCDALQRFLGYVINSAEVRPSRAERLALKRLQ FT AKLPGWKTCLRKFQKWERGVRHMQDTENVLDLGQVKQVINSAAAKKCGARL FT DLALEEYEKGLPESPVTTQEVIDCRNYLIACLVTFCTARASLISGLTIEGF FT QKYNNPKVDKHGLKQFNVTEHKTAGAHGPLTVHLDRETRDRVYAYINVFRP FT LLLIAGKGVASANVHNCMGSFLKISGVRLREGQTFTPTAIRKMWATTFHQS FT GEDERSMEELAMLAKHRVATQQSQYICSDRARMAASASAAISQRIKSPETH FT EAETPPTTTCALVPVGTINTIQWENNARQGTPSPPLSRT" XX SQ Sequence 2906 BP; 868 A; 727 C; 669 G; 640 T; 2 other; caacaacaac aacaacgaaa cagacgacgc tcctgttgga gaagaaaatc atgcgggaga 60 tgcggaaaca agtgaagaac ctgaaaggaa aaagaagaag cagagaacga aggccaattg 120 atctaccccc ggaattcagt tattttattt ttatttatat attattgaac ttttgaacag 180 atctcttgca aggacgcaac tgacccacca accacgacgg gaagacgaaa attacttgaa 240 caacttgcta acccaaatgc acctgttgct gcaacccctc ggccagcaag tgatgttgtt 300 gccgcaaatc caagaccaag gacaaatggg caaataccaa ttgcctgtcc tcagaggagg 360 aggaaggacc ccgcagtgct gctagaccgg ctagacccac caaacgtccc ggagtactgg 420 tcggactcca cgagtgacga ggactttgac gtcacgaata aggttagtgt cacccttatg 480 accactacat ctgttaacgt ttctctcctc accattcttt ttttactcat cagtcaatcg 540 atgctgaaga ccagcaggtg atacttctag tagtttccgc tattcctcca gcgcccccat 600 ggcggagacc tgaaagaagc aatggccagg gagatagctg ctaaggttcg gtccatcgtt 660 ggcgccgcgg cgccatcagg cagctacctc cttgacgcgt ttggagatgt gaatagagtc 720 tgggaccgct tcttcctccc cagacgcgaa aagggccccg accaactaaa ggccacaaca 780 cttcgagggt actgcgacgc cctacagcgc ttcctggggt atgtcattaa tagcgccgag 840 gtgcgccctt caagggctga gcggctggcc ctcaagcgcc tccaggccaa actccctggc 900 tggaagacat gcctcaggaa gttccagaaa tgggagcgtg gggtgcgcca catgcaggac 960 accgagaacg tcctggactt ggggcaggtc aagcaagtga taaattctgc ggctgcgaag 1020 aagtgtggcg cccgcttaga cctggcctta gaggaatatg aaaaaggcct ccccgaaagc 1080 cccgtgacta cccaggaggt gatcgattgc agaaattacc tcatcgcctg cctggtcact 1140 ttctgcacgg cgcgggcttc cctcatttca ggattaacca ttgagggctt ccagaaatac 1200 aacaacccca aggtagacaa gcacggtctg aagcagttta acgtgacgga gcacaagact 1260 gcaggtgcgc acggccccct gactgtacat ctcgaccgtg agacccggga cagggtctat 1320 gcttacatta acgtattccg ccccctcctg ctgatagccg ggaaaggagt ggcgagcgca 1380 aatgtacata attgcatggg ctcctttctg aagatatctg gggttaggct ccgcgaaggc 1440 cagacgttta ccccaacagc catccgaaag atgtgggcaa ccacctttca ccagtctggg 1500 gaagacgaga gatcaatgga agagctcgcc atgctggcaa aacaccgggt ggcgacgcag 1560 cagagccaat acatctgctc ggaccgggct aggatggctg cgtccgccag tgctgccatc 1620 agccagcgaa tcaaatcacc cgagactcac gaggctgaga ctccaccgac gactacgtgt 1680 gccctcgtac ctgtgggcac cataaatacc atacagtggg aaaacaatgc gcggcaaggt 1740 acaccttctc ctccactgag cagaacatga taaagatcat attcgtggct ataatccaca 1800 gcaaaaagta cccatctgag ctggagattg agaaaaaatt gagatcgacc ggaaggtcca 1860 accagatgtg ggagcgctgg gactgccccg gctggaggaa gaagcttgtg acaaaaattt 1920 acaacaagcg gaagctccat ctaagaaatc tttaaacccc tcctccaact ctcctacaac 1980 ccgaccagtg ccagatccta ctgatggaca gcgcccgagt cagcaccagt gccagatcct 2040 actgatggac agcgccaaac ttcgttgctt atgttgcggg gttatagttt cacggaacat 2100 cgttatcatt taagaaaatt gaaacaaatg agatgtacaa gttataatga cgtttcaatt 2160 aagaaagtcc gaactgaaaa attgcaaaag ctctttattt gatgaatcgt caagtggatt 2220 tttctgttgt tcatggaaaa gaaaagtcat gttcaacatg tattacatta cgtaatcaca 2280 tattttaatt tttagaaata ttgcccagga tactttttaa gtgataacaa acgagtaaac 2340 tacttttccc atttccccca ctattttctc cgaccataca aagggtaacc ccgggtcaca 2400 ttgggtactc caaattcaat aggtctatta accgagaatt tgtttactaa cataaatttc 2460 gattttttat agagtacagm aagcctcatc tataatcaag atatcaattt agtaagtatg 2520 atactagtct ataacaaatt aatgttataa cattatgcct gttgaattac tggacgtttt 2580 gccaatttac aaaaatggac ggtgacttgg acaaacacga caacaacaac aacaacaaca 2640 acaacgaaac agacgacgct cctgttggag aagaaaatca tgcgggagat gcggaaacaa 2700 stgaagaacc cgaaaggaaa aagaagaagc agagaacgaa ggccaattga tctacccccg 2760 gaattcagtt attttatttt tatttatata ttattgaact tttgaacaga tctcttgcaa 2820 ggacgcaact gacccaccaa ccacgacggg aagacgaaaa ttacttgaac aacttgctaa 2880 cccaaatgca gctgttgctg caaccc 2906 // ID hAT-5_NV repbase; DNA; NEM; 2225 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-5_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; hAT-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2225 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2225 RA Kapitonov V.V. and Jurka J.; RT "hAT-5_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 591-591 (2007). XX DR [2] (Consensus) XX CC Terminal parts are not known. XX SQ Sequence 2225 BP; 623 A; 541 C; 512 G; 549 T; 0 other; gaattcgggg agctgctcga tgcaggccga gttaaacggt tgagtgacag caaaaagttc 60 agacttattt cggcaaaaca ttccccaccc ccaaatcacg tttttcccaa gacaaccaaa 120 aggggcaaga gtcgatcatt tcaaggatcg tggctttctg agtttaagtg gttagtgtac 180 atcccgtcaa aggatggggg catttgcaag gcatgcatcc tatttcattc tacaagccaa 240 cctggtgtgc ttgtgaaatc gcctatgacc aatttcaaac gtgccaagga aatcttacaa 300 tctcattcaa taacaaatta ccacaacgac gcccttttga gagcggagaa ctttataaag 360 aatatgaaag ccccagaaca agccatttct acggctatcg aagctacaag gataacccaa 420 atagccagaa atcgtaaact tttggctagc atcgtcagct ctttgatttt ctgtggaagg 480 cagaacattg ccctaagggg gcatagagag gggcaggtca ccagtagcaa ccgtggaaac 540 ttcctcgctc ttttggattt cagggctggg ggatcaggcg acgaggctct cgcgaaccat 600 ttccgcactt gcgcgagaaa tgctacgtat acgtcatcca ctatacaaaa tgacatcatc 660 accatcattg gcgagcatct gcgaggacaa atcctttccg acatttctga ggttgcacca 720 tacttcactg tactgatgag gcgagtgatg tttcaaactt ggagcagttg tcgatctgtc 780 ttcgctttgt cgacacgaag tgccagattc aggagacgtt tcttggtttt gttgattgca 840 agagaacgac aggccaagct gtgtcgacag cgatcttgga tgccctggaa aaatggtcac 900 tggatatcaa gaactgccgt gggcaggcat atgaccgcgc tgctaacatg tcatcgctgg 960 cgcgcggagc tcaagccctc gtcaaacaga agagccccaa ggcagtgtac actcactgca 1020 atgcacactg cttgaatctt gtaatagtcc attcttgtga tcttccaatg attcgtaata 1080 tgattggcgc gctgaatgaa acctgatgtt ttttcaagta ttccccaaaa cgacacgatc 1140 tactcgtcaa tgtcattaaa gatattaaag atatatgccc cgaattaaag aagataacac 1200 taataagcct ttgccgcaca cgctgggtgg aacgccacga agcttatgag gtattctaca 1260 gcctcttccc tgcagttctg aaaaacctag aagtgatgac aaacgagcgt cagtacttag 1320 ataagtacgg aagttggagc tgggaccagg agagccgcac aagagccaat ggccttctgt 1380 ccaccatgtc caagtttgag tttacaatca cgatgatcac tgtgatgaaa tgcctctcag 1440 tcgtgaagcc actgagcatc caacttcaga agcgcgcaag cgacatttac agggcttact 1500 ctcaagtgag ctctgtaaag aaagatcttc aagctccgag gcgcgatatc gatgtcttgt 1560 tcgtaaagtg gtacgagtca tctgtggact tagggaagga ttttgacatt gtaccctcca 1620 tgccgcgcat tgcacgaata caacaacacc ggcaaaatac cccctcctcg tccccgtgtg 1680 aatattacaa gagatcccag ggcattcctc ttgtcgacca cctgtcgaca gaaatggata 1740 aattcttcag tgccgaccag atgaatgtat caaagctgat ctccttggta ccggaggttc 1800 tggtggctac caatggctgc gacttggaag aggccgttaa attctacaca gatgaccttg 1860 aaagccctga tgtactcgat gtagagcttg tccgttggcg cagtaaatgg acgagagtag 1920 aagaggaatc tattcctaga agcgcagtcg acgcactgaa aaactgtgat gccgagttct 1980 acccaaacgt acatgtgcta ctccgaatcc tctgcaccct tcccgtcact tcagctgaga 2040 gtgagagatc gttcagtaca atgaagcgcc ttaagacata cctacgaaac accatgagca 2100 cagaaagaga accttcactg gccttgatta gcgtccatta taacagatct ctggatgtag 2160 atgccatcat tgatactttc gccacgcgcc atcctcgtcg ccttttgatt gcagacattt 2220 tatct 2225 // ID Kolobok1-1_NV repbase; DNA; NEM; 2800 BP. XX AC . XX DT 06-MAR-2008 (Rel. 13.03, Created) DT 10-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE Kolobok-type family. XX KW Kolobok; DNA transposon; Transposable Element; subgroup Kolobok1; KW Kolobok1-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2800 RA Jurka J. and Bao W.; RT "A distinct subgroup of Kolobok-type DNA transposons."; RL Repbase Reports 8(3), 169-169 (2008). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 319..2220 FT /product="Kolobok1-1_NV_1p" FT /translation="MQYLPKYRSSHFNIKSKYNLPFYSSNMPKFANQRRKK FT RRFCGNRFTGSLNLEESEYKRVENSPNESENEPSCSTDMEPVQEGNPAKSA FT SFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGYRFVDMDILSNIFALLRCG FT DCGEFCLVLGEDEHNRKGCASKLRLTCQNCDWKHITYTSKVQGQSYEVNRR FT LVYSMRTLGKGHTGARKLCLLMNMPPPPTARAFTKNSRTLLKHVKEIATKS FT MGDSAKELKADTSDGPTNCGASFDGTWQRRGFSSLNGCVTGISIDTGKVLD FT VEALTVSCKQCKLHDHLDKDSEEYSLWKADHNDCKANFRGSAPAMEPEGVQ FT RIFNRSVETHNIRYTEYYGDGDCKSFNRVEKVYEADNIIVKKKECIGHVQK FT RVGNSLRKLKRDTPGLGGKGKLTDALIDKLQNYYGIAIRSNVGNLEQMRKA FT IHASLMHCASNEARVLHDHCPTGSTSWCKYQKDKADHTNTFKHSAGLPLEI FT LAKVKPVYVRLSEASLLEKCLHGKTQNQNESLNAMIWQRVPKEVHVGRDIL FT ELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYK FT SKEASKRRRKVLRGKRKKKEDKKKQAEGSLYDPGGF" XX SQ Sequence 2800 BP; 865 A; 530 C; 631 G; 774 T; 0 other; ggcggtatga taccctaaaa tttaccaaat ttgaattaat tgtgaaaaaa attattttcg 60 tctcaaagtt accgttattt atccttgaaa tgtatgccct agtgtaattt aaatgaaaat 120 atattttttc ctatagtatt cagcttttaa aaaatgttgg cgagccgttg ctaggggcaa 180 ccggtctgtt tgcaatttgt tttgatctag aagtcggatt tcaaagggcc tatttcgatg 240 gggttttcga ttttctcttg tttgggttcc ctgtgtttta tccacgtgac tgaatagatc 300 actaacaaga gagtttacat gcagtacctt cctaaatatc gatcttcaca tttcaacatc 360 aaatcaaaat acaaccttcc attttactct tcaaatatgc ctaaattcgc taaccagaga 420 cgcaaaaagc ggcgtttttg tgggaaccgc tttacaggaa gtctcaattt agaggaaagc 480 gagtataaga gagttgaaaa cagtcctaat gagtcggaaa acgaaccgag ttgttcgact 540 gacatggagc ctgttcaaga aggcaatcct gcaaaatctg cttcttttcg aaagctttcg 600 aaaaccgctg tcgaggcaga tacagtgcct aaaccttccc aatccactgc aaaggtatct 660 gatgctaagg tgaccgggta tcgtttcgtg gatatggaca ttcttagcaa tattttcgct 720 ttgctacgat gtggtgactg tggcgagttc tgcctcgtgc tcggggaaga cgagcacaac 780 cggaagggtt gtgcctcgaa gctacgtcta acctgccaga actgtgactg gaagcatatc 840 acttatactt cgaaagttca agggcaaagt tatgaagtga atcgcagact ggtttacagc 900 atgagaacac tcggaaaggg acatactgga gccagaaagt tatgtttact tatgaacatg 960 ccgccaccac ctactgcgag ggcattcact aaaaactcgc gcacactgct gaagcatgta 1020 aaggaaattg caaccaaaag tatgggtgat tctgcaaaag agcttaaagc agatacatcg 1080 gatgggccaa ccaattgcgg tgcttcattc gatggcacct ggcagagaag gggcttttca 1140 tctctgaatg gctgtgtcac cggcatctct attgacacag ggaaagttct cgatgtagag 1200 gcccttacgg tgtcctgcaa acaatgcaag ctgcatgatc atctagataa ggatagcgag 1260 gaatacagtt tgtggaaggc agatcacaac gactgcaagg ccaacttcag gggttccgca 1320 cctgctatgg agcctgaggg tgtacagcga atctttaatc gttctgtaga gacccacaat 1380 atccgttaca ctgaatatta tggtgatggc gattgcaaaa gctttaatag agttgagaaa 1440 gtctatgagg ctgacaatat tatagttaag aaaaaggagt gtattgggca cgtacagaag 1500 agagttggta actcccttcg aaaactgaaa cgtgacaccc caggtctagg cggcaaaggc 1560 aagctaaccg atgcactcat tgacaaacta cagaattatt atggcattgc catacgttca 1620 aatgttggaa acttggagca gatgcgtaag gcaattcatg ctagtcttat gcattgtgct 1680 tctaatgaag ccagagtgct gcatgaccac tgcccgactg gaagcacaag ctggtgtaaa 1740 tatcagaaag acaaagcaga ccacaccaat acatttaagc acagtgctgg tctgccattg 1800 gagatactgg ccaaggtaaa gccagtatat gttaggctaa gtgaagccag tctgctggag 1860 aaatgcctac atggcaaaac acagaaccag aatgagagtt tgaatgcaat gatttggcag 1920 cgagtgccca aggaggtgca tgtcggcagg gatattctgg aattgggctt gtatgatgct 1980 gtatgtcatt ttaacatggg gtacagctct gtactaagac tgttggaagc cctcaaaatc 2040 cctgccggca aatatacgga agcaggctgt ggccttgagg atacttctag agttcggctt 2100 gcagagtata aaagtaagga ggcatctaaa agaaggagaa aggtcctgag aggcaaaaga 2160 aaaaagaaag aggacaagaa gaagcaagct gagggctctc tgtatgatcc tggtggattt 2220 tagaaagtat gatctgaaca ctgccctcat attatgaatt tacacattta cgttatcttt 2280 aacttgagat ttctcaaatt gtgagatttc cgtatattag taatactcta acagtgatat 2340 cttccagaga atttgttgga attggctatt ttttttcagg ggatgtgcag tatatgtatt 2400 cttatacaaa gacctaaagg ataaacattt gctttaaatc tcaaattgaa aataattttc 2460 aaacctgaca aacaaatatc caaatattag tttctgacaa aatattcctc taatttgaaa 2520 aatatcacca gggtaatttc tatacttcat tgtatgcata tgttgtagta gaagatttcc 2580 taaaagtttg gtggctattg ataaaaaaat aaaggagtta tcactgtaag actggatacc 2640 atgatttcgg ggtaattaag cccccctggt tgccatagca acgcaatgtt ttgtcaagta 2700 tgtcaataaa tttatctgat cacataggtt gtatgtatgt tggttaaaaa ttattctagt 2760 gcttttcaaa aaaagtcacc cctcagggtc tcacaccacc 2800 // ID Gypsy-4-LTR_NV repbase; DNA; NEM; 141 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-4_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4-I_NV; KW Gypsy-4-LTR_NV; Gypsy-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-141 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-141 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-4_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 534-534 (2007). XX DR [2] (Consensus) XX SQ Sequence 141 BP; 42 A; 27 C; 19 G; 53 T; 0 other; tgttacgtga ttactttact gattgttctt agcgctatat ttagatgatt gacaactcaa 60 tgatactgta ttatattacc tactcccatg tagatctgat ctctctcttt gtgaataaac 120 tattgaacac aacacgtaac a 141 // ID Kolobok-N24_NV repbase; DNA; NEM; 3333 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N24_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP219; Kolobok-N24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-200 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-200 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3333 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N24_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus. It was reported CC originally as the unclassified NVREP218 transposavble element CC [1,2]. XX SQ Sequence 3333 BP; 1118 A; 603 C; 616 G; 990 T; 6 other; aggggaactg caagctaaat acaaccaggt cttatactta gatgtaaaaa caaaaaatac 60 gcttaacgta ggtgttttcg cgcggttata attcgttttc gagaaattcg acgtttcgcc 120 gccatcttgg atgttttgct cgtcagcgca taagctgtca gcggtcgctt ttgtgacgta 180 cagtatgaac aaggtggcgt tttgttcccg ccttatgcaa atatttattc tcatcgcggg 240 cgcgcctctt cgagtaacac tcggactact ccctgtaaac ttgctgcgag ttgtaatcac 300 cgaggtttca gcacatcaaa ctcagataca aagtmtgatg ctactccgta ggacgcagaa 360 catcaattag gggaaaactg tttaaaacaa gatcgaaaaa gtgtgacaga agaccatgaa 420 gtgaaaccaa acccattatg tgcgacttca tgtactcaaa cgactgttcg ataagcttac 480 aacatagaac ttatcgtttg atccgccaca astacctgga tctaagtact tttccacgta 540 mcagaaaaac tgtaagtgat attttgaaat attttgaaat actgttgaaa atgtaaatag 600 aaggcattta gcaaattgga aataaattcg ataagagtac gtgtttacat gcagcttttt 660 tagcgaggga aatagtcgat gaagtagatt tttttagatt atttgttgat tttatttata 720 cttattgtat gctagctctt actgccgaac agaccttcta ataaaattgt gtagatgaac 780 tgctaaaagt tgtgtatttg attgtatact ctcgtctcag tgagtctttg cattaaaaac 840 tgttgtaaaa tgagggtcgt tcttcgggat tgaacagagt aggagaactg gtataaagaa 900 cctgaaggat aacagaataa gttacatgct acccaatgat aagacaaaaa aatctatctg 960 ggtatagcaa gcacaataca gtttatatgt gggctatgtg tgcagaatca aaagcaactc 1020 ctcttttctc gaatggctcc aatctcttga aaatatttca tagtctggga gagtgttgat 1080 acaatgaaat aatcagtcat caattgttgc ggaattaaaa ttgctgtctg gtttattaga 1140 tgatttggcc aaaaaaactc aattcagttc ttaaatacca aactctacta gagaccatga 1200 ttaacatgct tactggaatt aaagcgccaa atcataaaaa caggcttata tttacggtaa 1260 aattcttgta aaaagcaacc cctttttttc agtgcatttc aagtaatcat gcagtagaga 1320 gcgtgcatgg tatggtgttc accatcttgg taaaatatga acaactataa caaatttgga 1380 atcaccataa cagcatcaag actcccctag taagcctcac tagtcagccc ccgggacatt 1440 ttgttctttg kctagaagag gggtcttaaa ggaaaataga aagagggggt ttagaatgat 1500 agaaataggg gttttatttc aaaatctctg tctctagctt ttggcacttg gtgattttag 1560 cccctagtta gcagagcttt tactgtgttc acatagaagg tagcactaag caataagcta 1620 ataaatgttc atataaaata agacaagaca actcctctct atttccgcca tttattggtt 1680 caacaaaaga atgaatataa gatttctgct gagcattagt gcatttccaa gggaattgca 1740 gccccaatcc aacaaccacc tccccctcat tgacacactc caggctacag gcaaggggta 1800 cactatacaa aatcatataa aaactagttc agatattggc agtgtgtggt gccaacatga 1860 ttctgtccat agaaaactaa aagggttgat ctttttgccc aatctattaa tgattgatat 1920 tgattgtgtt caagtaaaag tctaacactg acccataacc ctgggcccag cggctgtgtg 1980 agattcagat atttgcaatt tgattgaaac aagtcagtat attccacata gtcaaaatga 2040 atgtagactc acatatatag cacagctgca caacctttta ttgtggtaca ggtgtgaagc 2100 atgaagttat tctttttagg ttcttcatca gtgtaatcct tgcattcaaa cattctcata 2160 tactggtaac atttgattgg acttttatca tccagaggtg gggaatgcag tcatcaacca 2220 cattccagaa aatgataagc agcacatcac attgtgactg ccaccaaaat gaacaaataa 2280 aatggactgt ttgtacaata gtattttaag tcactagctt gattcttcat ttttagagca 2340 tcactctaat gaaaaaaaat attataaggt tcttataaaa aaaggagtgt atttattata 2400 acttacagta ctttcatatt atgaaagagt ccaaatacca gcagacagtc aagaggctat 2460 attgaaacac tacagtaggc atccatgagt tcaaataatt gtgtaaaaag tagccaataa 2520 aatgatggtt gtactttatt gactgaaaaa cattacagca tccttgcagt ataaatttta 2580 aataatatat aatgtataat taacaataaa tgatatatga actattttaa agaaaacgcc 2640 attcatatta taaaatacag attaaaacca tagccagtca aagctattac agtaacatta 2700 ctaaagatat ttcgcaaaat aaagaagaat gaaaacctga agtttctaaa taaattctca 2760 tattagccta gcgtatgaag gatgcaattt cggatgtcat gtwacacaat tgacttcaaa 2820 gcaaagtact cgaaatgtag aatgtaagac aaggaaaatg wtatacctga atcttcttat 2880 tcattttcaa gctaaaagct tattttaccc atttctaagg ctgcaataac ttcattagca 2940 gcacgacaaa gtttttacgc acatgtacac cgattcctca gatccattgt ggtttggttg 3000 tgatatgctt gctcttgcgt agtttcgagc ttgaatgatt caacgtgagg ttgtttgatg 3060 caacgtggaa tgagacgaaa acaaatggct gccacaaagt ttcagcggta atgccaaaga 3120 gcaacataga ccacgccatc ttgttcatac agtacgtcac aaaagcgacc gctgacagtt 3180 tatgcgctga cgagcaaaac atccaagatg gcggcgaaac gtcgaatttc tcgaaaacga 3240 attataaccg cgcgaaaaca cctacagtaa gcgtattttt ttgtttttac atctaaatac 3300 gagtcctggt tgtatttagc ttgcagttcc cct 3333 // ID CR1-22_NV repbase; DNA; NEM; 2878 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE CR1-22_NV non-autonomous DNA transposon - incomplete consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; KW DNA transposon; nonautonomous; NVREP295; CR1-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 2150-2878 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 2150-2878 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2878 RA Kapitonov V. and Jurka J.; RT "A family of CR1-23_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~98% identical to the consensus. Its 5'-terminal part CC is incomplete. XX FH Key Location/Qualifiers FT CDS 3..2663 FT /product="CR1-22_NV_1p" FT /note="AP endonuclease and RT domains." FT /translation="LENDLEIICVELSRPGTSKIVVSVVYRPPDADMDFMK FT MFSEFTRAASRLHRTKYLILGDFNLPKVEWLDGSGYSNTQQESAFTESLKD FT NALFQINTSPTHFSPLDNTGHILDLVITNEPELISEIEALCPDSMGFPTDH FT SIVQLRRFNAPHRTIYNFRNIDLTALRDEIRESALLVECARNNDIDIAWDG FT WCRVLFEILDKHVPKIRSRPNSTPPWFDAEVINLLKKKETARRKAKRTGHQ FT SHQLKYALLRRECKTLIAAKHKLYVEGLSQSLKSNPKKFWSYFRAKTKSNS FT IPDTVLHNGSKFYSPDEKAEAFNRFFFSTFTRDDDRFPEAYHDYSSGNSSV FT LQAIQLSVEEVRAALASVDPRKARGPDNIPSAVLKICADELAPSLCVLFNK FT SLELGKLPVEWKKSLIVPIFKKNRKERVENYRPISLLSVTSKVLERCIFAR FT MIDHVSQFLSNCQHGFMRGRSTVTQLLEFLHSVGNALDKGQQCDVIYLDFA FT KAFDSVSHARLIHKLHHYGFRGKVLDWFTHYLSDRTQCTVVQGATSSPLPV FT LSGVPQGSLLGPLLFLVYINDLPALLDPGTSLSLFADDTKCYRTISSPSDA FT VKLQSDLDVLSEWSRAWKLRYNIDKCEVLRVTRKRSPIETNYSIDGHVLKL FT TPAQKDLGVVVARDLKWSEQSSIAVSKGYQMLGFLRRNGLRDFDTDARRSL FT YLSIVRPTVGYASEVWAPQAITDMRSVEALQRRATKVILTNSAELTYQERL FT EQANLLPLSYWHEIKDLVFMYKCLNGHYNIPFSHYFKPLPSLRSSRHRSSL FT DIATPLCKTKLFQNSFFNRIPKVWNTLPVDIRTTSSLPSFKNKLAVRYSQA FT LQTTFNAENAVTWKSVCPKCCRARSILAQPSCCY" XX SQ Sequence 2878 BP; 801 A; 711 C; 595 G; 771 T; 0 other; aacttgaaaa cgatctagaa attatatgtg tggagttatc tcgtcccggc actagtaaaa 60 tcgtagtatc tgttgtgtac cgcccgcccg atgctgatat ggattttatg aaaatgttct 120 cggaatttac tagggctgcc tcgagactac atcgaacaaa atatctaatt ttgggggatt 180 ttaatctgcc taaagtcgaa tggttggatg gatctggtta ttcaaacact caacaagaat 240 ctgcatttac tgaatcttta aaggacaatg ccttattcca gataaatacc tcccctacgc 300 acttctcgcc tttggacaat actgggcaca tacttgacct tgttatcact aatgagccgg 360 aactgatctc tgaaatagaa gcgctctgtc ctgattcaat gggattccct acggatcatt 420 ctattgtcca gctccgtcgc tttaacgcac ctcaccgtac tatctacaac ttcaggaata 480 tcgaccttac ggctctgcga gatgaaatac gcgagtcggc tctcctcgtg gaatgcgcta 540 ggaacaatga catcgacatt gcgtgggacg ggtggtgccg tgtattgttc gagatactgg 600 acaagcacgt gccaaaaata agatctagac ccaactcaac tccaccatgg tttgacgctg 660 aagtaatcaa cctccttaag aaaaaagaaa cagccagacg aaaggccaag agaaccggcc 720 accaatcaca ccagctgaaa tacgccctcc tcagacggga atgtaaaact ctgatcgctg 780 cgaaacacaa gctatacgtt gagggcctta gccagtcact aaaaagcaac ccgaagaagt 840 tctggagtta cttcagagct aaaacgaagt cgaactcgat acctgacact gtacttcaca 900 acggatccaa attctattca cctgacgaaa aggccgaagc tttcaaccgc ttctttttct 960 ccacttttac tcgagacgat gacagattcc cagaggcata ccatgactac tcctcgggaa 1020 actcaagtgt gctacaggca atccagttgt ctgtggagga agtgcgggca gcccttgcaa 1080 gcgtagatcc gcgcaaggct cgtggtccag acaatattcc atctgccgtc ctaaaaatct 1140 gtgctgatga gctagcacca tcactctgtg tgcttttcaa taagtcactt gagctaggca 1200 agctgcccgt tgaatggaag aagtccttaa ttgttccaat cttcaaaaaa aatcgtaaag 1260 aaagggttga gaattaccga ccaatctccc tgctcagtgt gacctcgaaa gtacttgaac 1320 gctgtatctt tgcacgcatg atcgatcacg tatcgcagtt cctttccaac tgccaacatg 1380 ggtttatgcg aggccgctca acagtcaccc agcttctaga gttcttgcat tctgttggca 1440 atgctcttga taagggtcaa cagtgcgacg taatatacct cgacttcgca aaagcgtttg 1500 atagcgtctc gcacgcccgg ctgatacaca agctacatca ttatggattc cgtggcaaag 1560 tcctagactg gttcacgcac tacttatctg acagaaccca gtgcacagta gtccagggag 1620 caacatcttc acctctccca gtactctccg gtgtacctca aggcagtcta cttggtcctc 1680 tactcttcct agtatacatc aatgacttac cggccctttt ggaccctggt acctcactta 1740 gtctttttgc ggatgacacc aaatgctacc gtactatcag ctctccctct gacgctgtca 1800 aactgcagag tgatcttgac gttctatcag agtggagccg agcatggaaa ctgcgctata 1860 acatcgacaa gtgcgaggtc ctgcgggtga ctcgcaaacg cagccccatc gaaacgaatt 1920 attcgatcga tggccacgta cttaagctga ctccggctca gaaagaccta ggagtggtgg 1980 tcgccaggga cctcaagtgg tccgagcagt cctctattgc cgtttccaag ggataccaaa 2040 tgctggggtt cctacgacga aacggtctac gtgacttcga tacagatgct agaagatctc 2100 tttatctgtc aatagttaga ccaacagtgg gatacgcgag cgaggtgtgg gcacctcaag 2160 caattacgga catgagatca gtggaggctc tgcaacgccg tgcgacaaaa gtgatactta 2220 caaatagcgc tgaactcaca taccaggaac gcttagaaca ggcaaatttg ctacccctct 2280 cctactggca tgaaattaag gaccttgttt ttatgtataa atgcctaaat ggacactata 2340 atattccgtt ctcgcattac tttaaaccat tgccatcact aagatcgtcc cgccacagga 2400 gcagccttga tatagccacc cccctctgta aaactaagct ttttcaaaat tcatttttca 2460 atcgaattcc aaaggtgtgg aatacactcc ctgtagatat acgcactacg tcatcattac 2520 cctcttttaa aaacaaacta gcagtcagat atagccaggc gctccaaact actttcaatg 2580 ccgaaaatgc agttacatgg aaatcagttt gtcctaagtg ctgccgcgct aggagtattc 2640 ttgcgcaacc atcctgttgc tattagcaat ttagagtagg gcttttttta aattactttt 2700 tcttcatgtt ttccttcatt ttgttgttgt cgttattgcc aattattttt tcttttattg 2760 taaagggtta cacttgagtt ggagccgtgc tctgttgtgt caaccttacc gctatttcaa 2820 tatgtgttat agtggtagaa gccttataaa taaataaata aataaataaa taaataaa 2878 // ID DNA-7-2_NV repbase; DNA; NEM; 1068 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1068 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1068 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1068 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1068 BP; 312 A; 218 C; 212 G; 326 T; 0 other; caagagagca taagataaga gagggacact ttggtattac ccgcgcgcca tgtcgattcc 60 gaatctggct atttttagta accaccaccc caccactgcg cgtgagcatt tttactcacc 120 ctacccccgc gctttggcat ttacatcttg ttgtttgccg ctgttttgtg acttgaaacc 180 gaaaaaaaaa acaccctatt tgcacaaata ccatcgaaaa tttcattcta gcatcaagga 240 tacaggcagt tgcggtttat taaggggatg tagtacttcg aggattgcaa gatttcgaaa 300 acgtgtaaaa aaaaagagac ttcattcaaa atcaagagcg gaaaacctcg tgcttcaaac 360 accgcttccg ctctaacttg ctgcttcttc gtggtttttc aacattcatt atcttcctaa 420 tggtcaaacg aaatctgtaa gttagacatt agatatgata ttgatttttg tgaatattcc 480 ggtgaattga gaaggaatcc aagaaaaata catttcataa aactatcctt gtagcgaggg 540 aatgcatttt tgtgatgatc aaagccagca agctgaagta tctgagcttt tctaatagtg 600 agaaaataaa gagggagata ttactgtact tctttgatgt tgtttctaga catttctata 660 actattaagt atattataca agctggagtc gggatttgaa tcaaacgcgg tatcacagcc 720 attttatcgc tcgtcggtgt tttctttctt cttgacttga cttcgccgct cagacaaaca 780 aaacagtcaa actattcagg gatttagctt tctgtgagta tatttgccaa tcttgcttac 840 ttaagttaga cttgttttct tcttccgagt tattttacat gatctctttt cattcctatc 900 gagttggcaa aacaacaaca cgcaacccgc gggggagtag gacaaaataa aaggagcaaa 960 tcctcacgcg cagtggtggg gtggtggtta ctaaaaatag ccagattcgg aatcgacatg 1020 gcgcgcgggt aataccaaag tgtccctctc ttatcttatg ctctcttg 1068 // ID piggyBac-1_NV repbase; DNA; NEM; 2384 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-1_NV autonomous DNA transposon - DE consensus. XX KW piggyBac; DNA transposon; Transposable Element; piggyBac-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2384 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2384 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 640-640 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 265..1965 FT /product="piggyBac-1_NV_1p" FT /note="transposase." FT /translation="MAESLAIDASEFRAIFGVNPDENDDVNNSENEFQGFE FT LSSEEESSSSEEESEDESDEDSVKNWSEQLTHFDLEDFTGQQRLKKTVSED FT AKAEDYFSLMFSDELIGLISDETNRYAQFIIGQKADREARLAKWKDVTPDE FT LRMFLGVALVMGINSLPQQALYWSQNPLFGNLGIQDVIPKTRFEEIAQFLH FT FSDPNNEPQRGDADYDRLFKVRPVLSDVLKSIQQAYKPSKDISVDEGMIAF FT KGRLGFRQYMPAKPTKYGIKVWMAADANNGYVCNFKVYLGQENRQRVHGLG FT YDVVMDMAKPFLNSYRHIFCDNFFTTVRLFDHLLDQKTYACGTVRVNRREL FT PPCAKEKLKPGEMLQRQRGQLLFTKWHDKRDVSLLSTNVSPLEPGRTVRRK FT YRSREEIDIEKPKVTDVYTAHMGGVDRADQLRSFYSSGWQSRKWYKYMFWF FT LFNLAVTNAFVLEGFKRQLQGKAKRTVIVFKTELAQSLIAKFNSRKRPRVP FT APPTPQNIPASAHVATHVEGRKRACVLCSKKGKTTPKGYKIETYYECAVCK FT VGLCRKGCHQAFHEMDHGTA" XX SQ Sequence 2384 BP; 692 A; 523 C; 559 G; 610 T; 0 other; ttaacccttt cactatcaaa acggccaaaa gcggccaaac ggaaatgtga cgtttttcct 60 ggagcggcca aaagcggcca atttgcatac aactcaaaac aatcgtcccc ctcctcccta 120 gggaattcat gctgcaggaa aacacgtgga ctattgttct tacgacatta gccaatcaaa 180 tcccaccaac tgcgcataat ttttcattgt ataaggtgcg tgagcgccga ccgaaaactt 240 atcagtcacc cctgtactgc aaacatggcg gaatctttag cgatcgatgc gagcgaattt 300 agagcgattt ttggtgttaa tcctgacgag aatgatgatg taaacaattc tgaaaatgag 360 tttcagggtt ttgaactttc ttctgaggaa gaaagcagtt cttctgagga agaaagtgaa 420 gacgagagcg atgaagatag tgttaaaaat tggtcggagc aactcacgca tttcgacctc 480 gaggacttca ccgggcaaca acggttgaag aaaacggtat cagaagatgc aaaagctgaa 540 gactatttta gcttgatgtt ttcggatgaa cttattggtt taatttctga cgaaactaac 600 cgatatgcac aatttattat cgggcagaag gccgatagag aggcacggct ggcgaagtgg 660 aaggacgtca ctcccgacga actccgcatg ttccttgggg tagcgctcgt gatggggatt 720 aattccttgc cacagcaagc cctttattgg tctcaaaacc ccctatttgg aaaccttggg 780 attcaggacg tgatccccaa gacaaggttt gaagagatcg cccaattcct gcacttcagc 840 gatccgaaca acgagccaca acgtggggac gccgattacg accgtctctt taaagttcgc 900 ccggtactga gcgatgtctt aaaaagtatc cagcaagctt acaagccctc aaaggacata 960 tcagtcgatg agggaatgat tgccttcaag ggaagacttg gttttcgcca atatatgcct 1020 gcgaagccga cgaaatacgg cataaaagtg tggatggcgg ccgacgcgaa caacggctac 1080 gtgtgcaact tcaaagttta ccttgggcaa gaaaacagac agcgtgtcca tggactcggc 1140 tacgatgtgg ttatggatat ggctaagcct ttccttaaca gttacagaca catcttctgt 1200 gataactttt ttacaactgt tcggcttttt gaccacttgc tagatcaaaa aacctatgca 1260 tgcgggactg tgcgcgtgaa tcgcagggaa ttgccgccat gtgccaaaga gaagttgaag 1320 cccggtgaaa tgcttcagcg tcagcgaggc cagctcctct tcacaaaatg gcacgacaag 1380 agggatgtca gtcttctttc gacaaatgtt tcccctcttg agccgggtcg cacagtgaga 1440 agaaagtatc gcagccgcga agaaatagac atcgaaaagc cgaaggtgac ggatgtttac 1500 acggcgcaca tgggaggagt tgaccgcgcg gaccagctcc gatcgtttta ttcctcgggc 1560 tggcaatcgc gtaaatggta taaatacatg ttttggtttt tgttcaatct ggcagtgacc 1620 aacgcattcg tccttgaagg atttaagcgc caattacaag gaaaggcgaa gaggactgtt 1680 atcgttttca agacagaact agcgcaatcg cttattgcga agttcaactc gagaaagcgc 1740 ccacgagtcc ctgctccccc aactccccag aacatcccag cctcagctca tgtcgccact 1800 catgtagaag gaaggaagag ggcatgtgtt ctttgcagca agaagggaaa aacgaccccg 1860 aaaggctaca agatcgagac gtactatgag tgcgcggtct gcaaagtcgg tctctgccgt 1920 aaaggttgcc accaggcatt ccatgaaatg gaccatggca cggcataaac tatcatagta 1980 cagactttat ttttacacta tttcttatga ctatatgctt acaactacct ttattatatg 2040 ttctatttat attttgtgtc taagataaac aataatcttg taaatgatgc aaaatttgag 2100 atcattggta gagaagatgg cgcgaaattt gaatttttgt atgaaattgt aaattcaaat 2160 cattatagct ctaagcaata gtggcaaaaa cgccaatatt tcggttcatt aaaaacttca 2220 ttatctgcac tacttgtttc tgtgctttat tctttacaat ctgcctccaa aacctactga 2280 gcatgcatgt tttgttttgg tgtgtaaatt agtggggaat gctaattagg ctccaggaac 2340 agcaggatgt gacacacatt gggcttcagt agtgaaaggg ttaa 2384 // ID DNA-TA-12_NV repbase; DNA; NEM; 768 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-12_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-768 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-768 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-768 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-12_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 768 BP; 199 A; 203 C; 143 G; 223 T; 0 other; ccgtaaatga cctaataaac gccccctatc taaagaacgc ctctgatcta acgcccccct 60 aagcttacaa gtttgcaatg aacgcccctc tctaataaac gccccctctc tccccccccc 120 ctcccccgct cccttccctg ccattaaaaa caaacgacat aggaattccg gaaatataaa 180 tggtaattta atgccatctt gcttaatcaa cactggtaag cgagtagcgt cttgttcaat 240 gtcaagttca aaatgagggt accgctctct aacgttcctg atctcattgc ttaggatgtc 300 tgcaattttc tttcgttttg tcctcgcagt gtagcatcca ggaataaggc ctacttctcg 360 tttccgcata cttgcaccgt taaatcattg cattcgtcgc acggtaaacg cttgctacgc 420 aggctataat ttaaaatgat cctggctgag actagaaccc cactgcactt gggcagggcc 480 gtagccagca tgaggcaagt gaggcactcg cctcggtaaa attttgatgt ttagtgtttc 540 acaattgaaa agtatgagat aaaacacctg cttttgttgg atttatcatc cagtggctag 600 ctttgcctcg gtaaaatttt gattctggct acaggcctgt tggatttgtt atattttcat 660 agtttgtaaa gaacgcccct ttctaataaa cgcctcctat ctaatgaacg ccccctcgga 720 ccatcgaaat ttaataaacg ccccgggcgt ttattaggtc atttacgg 768 // ID MSAT-2_NV repbase; DNA; NEM; 41 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE MSAT-2_NV non-autonomous DNA transposon - consensus. XX KW MSAT; Satellite; Simple Repeat; minisatellite; MSAT-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-41 RA Kapitonov V. and Jurka J.; RT "A family of MSAT-2_NV minsatellite DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [1] (Consensus) XX SQ Sequence 41 BP; 17 A; 7 C; 10 G; 7 T; 0 other; cagtttacat ggaacaggcg taaaggtaaa acgcaaacag t 41 // ID Gypsy-27-I_NV repbase; DNA; NEM; 4078 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-27_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27-I_NV; KW Gypsy-27-LTR_NV; Gypsy-27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4078 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4078 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-27_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 485-485 (2007). XX DR [2] (Consensus) XX SQ Sequence 4078 BP; 1162 A; 991 C; 1057 G; 868 T; 0 other; tggtggcagc cagtaggtga gcgaacacga acagcagaaa gaatatattt cccttgtgaa 60 gtcaaaactc ggcgacagat ggccacgggt ttcacattgc ctccaccggc cccactagca 120 atacacgacg ctacgatagc agagaaatgg aaacggttta agctggcttg agacaactac 180 tcccttgcga cagggttgca ctccaaacca gaagatgtac aagtagcgac tttcatcaca 240 atcatcggag aggaagctag agacgtattt tccacgtttt cttggcagga cggagacaaa 300 tagaaaatac aaccggtaat agcaaagttt gcggggtact gtgagccgcg gaaaaacgta 360 ccgttcgaat gctaccgctt taacaagcgc gtacaagaag cgggcgagac ttatgatcaa 420 tatcgtacgg ctctgagaaa acttgccgag gggtgtgagt ttgcaaacat tacaccggat 480 gagatattgc gtgacagacg tttgtttggc gtgagcgata acgaggtgcg cgagcgtttg 540 ttaagggaaa caaacctcac cctcaagaaa acagacgaaa tatgcagagc atcaaaaagc 600 ccgacggcac agatgaaaga agttggtcaa gccgacacca ttagtgctgt ggtttttaat 660 aagaaaagcc aacgccatca taacaagtct gccagcagga ccgcgtgcgg caactgtggc 720 cgaacacacg agagtggcga ctgcccggcc cgtgggaaaa tggcaatgtg tgtggaaaag 780 tgaaccattt ctccgctgtc tgtcgaagca agagatgaag tgcgcgtgtc aataaaccgg 840 atgttaaatt cgtagaacaa gagagcgacg aagatgctag tgaacccgag acgtatgtga 900 taagcaagtg tcagccgtca cccttgacga ctcccaactt gtcacgctac ggcttgaatc 960 aggaaacagc ttgcgtttcc aagcggacac aggtgttcag tgcaatgtgg tcccgctgag 1020 catgtacaag aaagcgacga atgacattgc actaagaaat gtgaaaccta ccaagtccac 1080 tatttccgcc tatggaggat ccaaacttgc tgtaataggc caagtgatca taccggtgtg 1140 gagagacacc aagaagtgta agttggactg caagttggtc gacaaaaacg atattcgtcc 1200 cattctagga agaaaggcca gtttaggatt gaacattata cagtacgtgg ataataacgc 1260 catcaacaaa ccgatcatcg gcaactccac ggtttacgct gtacattcct cggcaatcgt 1320 gactatcgac aatatcgttc aacaattccc aaaggtattt gcagatgagg tcggactacc 1380 ggacggcgag taccacataa agcttgacgg tacagtgagt cctgttcagc atgcaccacg 1440 acgagtttca gtagctctga gggatcaact gaaggccgaa ctcgacaaaa tggtggagca 1500 ggaaataatt gcaccggtaa ctgcacccac accctgggtg agttcaatgg tggtggttcc 1560 caaggagcac ggcaagcttc ggttgtgtct tgacccgaaa gacctcaaca aggctatcat 1620 gagggagcac tacccagtac ccactattga agatgttgcg acacgactcc atggagcgaa 1680 ggtgtttaca aagctagacg tccggagcgg tttctggcac atcaagctcg ataactcgtc 1740 atcttatcta accacgttca aaactccatt cgggcgtttc cgttggaggc gaatgccttt 1800 tggaatacgc tcggctcctg aggtgttcca gagaaaattg cacgagatca taggaatgcc 1860 acaagtggga gttatcgcag acgactttgt tgttgtcgga aaagggggga cgctcgagga 1920 ggccaacaga gaccacgaca agaacctgat agctttcctc cacgtgtgtg aagagaaggg 1980 gctgaagctc aacacagaca agctgaagct cagacacaca gaggtatcct ttatcggcca 2040 cgtagcgacg ggagatggtc ttaaggttga cccggctaaa gtgaaagcaa ttcaagaaat 2100 gccggcacca accgacaagg caggggtaca acgcctgtta ggggttgccc aatacctaag 2160 caagttcctc ccaaacctgt ctgacgccac cagacccctc cgggagctaa cacagcaaga 2220 ggtcgcgtgg agctgggacg agccgcaaca aaaggccttg gatgccctca aagacgcagt 2280 tacaaacaca ccaatactac gctacttcaa cgtgaaagag tgtgtcacac tacagtgtga 2340 cgcatcccag tttgggcttg gtgccgctct tctacagaat ggccaaccgg ttgcttacgc 2400 ctctcgggca cttacctcag cggagactct gtatgcccaa atagaaaagg agctattggc 2460 aatagtattt gcatggctgg atggggtcat ggtagaaagc gatcacaagc cgttggaggc 2520 aatcttcgtg aagctcctac actctgcccc ccagcgactg caaagaatgc tgcttaggct 2580 ccaaagatac agcctcacca taaggtacaa gaagggcaag gagatgttcc tcgcggacac 2640 tctcagccgt gcacccttac ctgaggtgaa tacgtgtgat ttcgtgcacg agctagaaga 2700 aattaaccac caagaatgct taccagtcag cggtgagcag tggcaacgaa taaaacacgc 2760 tgcggcagat gatcctgtta tgtgcaagct gcgtgacgtc atcaagcttg gtttcccgga 2820 gacgaagttt gctcttccac actgtctgat tccatactac gattcacggg atgagctcac 2880 cctacaggaa gacctggtat tcaagggaca tcagctggtt gttcccttgt gtcttcgcaa 2940 agaaatgatg gaggcaatcc acgcctcgca tgttggaatc gagggatgca ttcgacgagc 3000 acgcgaaagc ctttactggc cacgaatgtc tacagagtta aaggcatata tctcttcttg 3060 cgacgtatgt ttgtcgtacc gaagcacacc cggtaaggag ctattggtac aacacgagat 3120 ggtcgcacgt ccgtggtcca aggtgagcgc cgacctctgt gaacttaatg ggcgaatttt 3180 gttagtcatt tcagactatt acagcagctt tattgaagta tcgcgtttga caaccaccac 3240 atcacggagt gtcatcaaag cactcaaaga ggtatttgca cggtttggca ttccggatgt 3300 gctggtatct gataatgggc cacagtttgt gtcgagtttt cggtctttgc aagagagtgg 3360 agctttgatc acaagacatc gtctccacat tatcaccagt ccaatggcaa ggccgaaaat 3420 gctgtaaaag ccgtgaaacg gttgtttaag aaatgcaagg cctcagggca gtcagagttt 3480 cttgcactac tcgactggcg gaatacctcg acaaagggag ttggcaccag ccctgcacag 3540 cgcttaatgg gtaggcgctg taaaacgcta ctccctatgg cgggagccct gctgcagcca 3600 agacatagca tcgaacaaga ggcacgagca cttaccggta ccaagcaacg tcagctgttc 3660 tattacaaca agcacacaaa accactcaac ccaatagtac ctggtgagac cgtgcgcatg 3720 agattaccag gacagctgag cggagcggag ctacattgtg aaggttggca ataggagtta 3780 ccggcgaaac cgtaggcagt tcatcctagg tcaggaggca ccgcttcctg agttgcccga 3840 ttcaagtgag cctgagtcat cgccaccaag cgatggtgaa gcatccaccg acccactggc 3900 caccgagcac actacacctg agaccagcac gacagctagc cctcgtaggt caggtcgtac 3960 acacagggct ccggcatggc acaacgacta ccagatgcaa taactgtttg aagttatatg 4020 tatatagcaa tatggcctta gaataggaca tttatttgtt ttgttattag aggaaaga 4078 // ID DIRS-9_NV repbase; DNA; NEM; 4473 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-9_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4473 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4473 RA Kapitonov V.V. and Jurka J.; RT "DIRS-9_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 448-448 (2007). XX DR [2] (Consensus) XX SQ Sequence 4473 BP; 1339 A; 975 C; 956 G; 1197 T; 6 other; ttctacctcg catttgcata caatcagagg tcacgtgaga tagcaagctt gcagtatccg 60 agctcagtgc gagtttggtt ttcgagcaaa gtcgacgtat agcaaagttt tcccgacaag 120 tattccacag aacaacccat tggtccctga aggactccac tcatctcttc acaatggcaa 180 aggatccgcc tgcggacaaa aatatcaggc gacaaagccg accagaagac gaacctgatg 240 atttgaactt ggatagtgaa catgaagaac aatccaagat ggcggccatg ccgccggagg 300 acgaaatttc acctcctagt atcacgccta cggacgtgaa gtctctaaca gaggctattt 360 attgccttac caaaaggcta aacaatgatg tgcaaccttc catgaaggcc aaagagggca 420 aaaggagcgg tgattcgcga tccgagattc ccgccaaaaa ggcgaagtcg gggaagaagc 480 tccatgagcc ttccagctct cgctcctcga gcgatgaaag ctcctcagat gaggaggata 540 ctcgcgaatc tctccttaaa aagtgctctg cggctccatc agacgatgaa gatgactttg 600 taaagsagct agcgaaagaa tacgagtcag aagacttgat tggtgacgat ttgcaaaaca 660 agcagcttgc cagactcctt gagaaaatgc tgcgcaatcg tctccccgat aaaacgctta 720 aagagaagct tgacaaacaa gacaggcctg aaaactgccc tgctgctaaa gctacgagag 780 tcaatccggg aatatggcgt aagctccgtg agcataccca aaaacgagac cttcagtttt 840 ataaactaca acatgcgctc gtgaaaggta ttatgccttt gactcgattg acagacatgt 900 gcatgtcagc caaaggaagc ttggacgcag cctctgtcca gcagataaaa cagtttggcc 960 tagaagcatt atcacttatt actcatgcta attatgagct taatatgcaa agaaggcttt 1020 tgatgaagcc agacattggc agagaatatg ctgctctgtg ctcccctcaa gtcccattca 1080 cggacatgct ttttggggac gatttgcaaa agcatctcaa agacatcgga gatgtcaata 1140 aaattggggc caagttgcag tcaaaaaagg ggccccagag cttcaggtcc tctcaagtca 1200 acaaccacag aaggagctca aaaaactgga acagccaaaa ttacaagtct tggaaacgaa 1260 gggagccaac tcagaagagc tccatccagg gcaagcgccc atcacagtag gccaagcctg 1320 ctcaacaaca ccaaatgtaa gtgttgccaa tacttttatt gctggcaata tatctaatca 1380 tgtctcaaat tgggagctga tcacatcaga ccctagcatt cttgagattg ttactggcta 1440 ccagttggaa ctcaatagca tacctcatca atcaactgta ccccatttca ggttttctaa 1500 aggggaaagt ttgattatag ctaatgagat agacaagtta cttcataaag gagtaatatc 1560 aaagtcttct cactgtgagg gtgaattcat ctctacggtt tttactagac caaaaaagga 1620 tggatcacac aggctcgttt taaatcttaa gagattaaat acctttgtag cctaccacca 1680 ttttaaaatg gaatccctcc aatcagctgc tcagctgcta aaaaaggact actggatggc 1740 agttttagat ctcaaggatg cttattattc tgtatctgta catcccaggt acagaaagta 1800 cctccgattt gagttcaatg actctgtttt tgagtattcc tgccttgcta atggattggc 1860 atctgcacct agggttttta caaagcttat gaaaccagtt cttgctagcc tgagagaaaa 1920 agggaatctc ttagttggct acattgatga tatccttctc ttggctgaaa accctgacaa 1980 attgttgcag gaaatttcag aaactgtctc attactaaag tcactggggt ttactgtaca 2040 cgagacaaaa tctgtcacca ccccagctca aacagccaag tttttggggt tcattctcaa 2100 ttcacagaac atgaccatct ccatggtccc tgaaaaagta gacaaaataa ggtcagcatg 2160 ttctgcacta gaacaaaagg aaggtcaggt aaacatcaga gatgttgcct ctgttgtagg 2220 ccttatggta tctgcttttt caggggtaca atatgctcaa ctttattatc gagctctaga 2280 gaatgacaaa actgatgcat tgaaatgcaa tggttggaat cttgagggaa aaatggycct 2340 ctcccctttg gcaaagcagg acctactatg gtggatacag ggtgttgata aacatcctca 2400 agccattctc tcacctcctc ctgcagtgat acttaaaact gacagctctc taaaaggytg 2460 gggaggggtg ttggaagata cagacatgat aacagggggt agatggtcat ttaaggagtc 2520 tcaatcccat atcaattatt tggaactcaa ggccatcttg ctttccttga aatccctctg 2580 tgaccamatg caatctaccc acattaaagt gctctgtgat aatacaactg ctgtgtctta 2640 tatacggaac atgggaggca ctaaatccag agagtgcaac actatcacca gagagataat 2700 aatgtggtgc atgagcagac aactgaagtt gtccatttcc cacataccag gcaaattgaa 2760 tactgaggct gatgctgcta gccggaaatt taacagtaac actgaatggt cattagatgc 2820 aaatgcattc agtagccttg tatgtagatg gggcacccct gacatagata tgtttgcttc 2880 cagactgaac tataaagtta ctccttatgt tgcctggaga ccagaccctg gggctatagc 2940 tattgatgct tttttgttag actggagcaa atataatctg atatattgct ttcctccttt 3000 cagccttata ggcaaagttc tacaatttat agaggagagc ggcacaacag caatcatagt 3060 aatccctcat tggccaacac agttttggta cccctacctg cttcagctgc tcaaggctcc 3120 accagtgcaa atcaagatgc gcaaacagac cttagctctg ccgtttcagc cagaagaggt 3180 acatccactg tacccgaagc ttcagcttct tggttgtctt gtatccggtc atcgctagtt 3240 gcgcaggggg tacaaggaga gcctttggaa atcattttaa agtcttggcg gtcaggaact 3300 cgaaagcaat atcaaactta tgtcaagacc tgggtcaagt attgcttgga taatggagtt 3360 aatcagatac agccaagtct gcaaaacgtt ctgaatttcc ttacatctat gtctaaaact 3420 gttggtttta gtgctgttgc tacagccaga agtgcactat catcgtttat tttgatagac 3480 ggtctcaaag ttggtgagca cccactggtg tcacgattca tgactggatt gtttaatgag 3540 aagcccgcac tgccacgata tgtttcaaca tggaacccac atacagtttt gacatatctt 3600 aaaagtctac catcttttgg ggaaatgtca ctaaagcaac ttactcagaa gctggttatg 3660 cttatggctc tgctgtcagc ccagagaact caaacactac agacattatc yattgaggat 3720 atgactgtca ctcctgggaa atacgtattc tatgtttcat ccatcttaaa gcagacatct 3780 gccaaaggag gcaagaacag acatttatcg cctatagttt tcactagttt taccccagat 3840 aagagtttgt gtgttgtaga ggcccttgat gtctacattc aaagaacagc tccttttcga 3900 aaacaaacaa agcagttact aatatgccat actgcaccac atggacctgc atcaaaggac 3960 agtgtgtcac gttggatcaa acaaacaatg aaggcagcag gaattaacac tgacattttt 4020 aagccacata gtaccagaag tgcttctaca tcaacagcta aggctgcaaa tgttcctata 4080 caggaaatta tgcragtagc tggctggcgt tctgattctg tatttacgca gttttacgat 4140 aggccagtca agactggaag tatgtttgct aatgccatac ttaatagctg ctcatgaaac 4200 gtctagttat tattgttacc ttgttagagc aatacgaggt ttgcatacag ttttgggtgc 4260 attgtagcat taccgttacg ttgttatatt ttgtgcatga ctgtacggac acaggatgat 4320 tcattcatat gaacctttcg tttttatttt ggtgtctttg tgctttgaag tctcacgtga 4380 cctccgattg tatgcaaatg cgaggtagaa ttgaaaaatt aaacgagact tacctgaagt 4440 cgaagtttga ttgagattct accgtagcat ttg 4473 // ID TE-2_NV repbase; DNA; NEM; 911 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone TE-2_NV transposable elements - consensus. XX KW Transposable Element; Nonautonomous; TE-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-911 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-911 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-911 RA Kapitonov V. and Jurka J.; RT "A family of TE-2_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Its 140-bp 3' terminus forms a palindrome. XX SQ Sequence 911 BP; 278 A; 186 C; 183 G; 264 T; 0 other; tatttatttt tttcggggtc cggtatccat caaatcgcgc gctctgattg gctctcgtga 60 ggtccggtat cctacgatcc ggaccccgcg ataccggacc gctcacctcc aaagctcgaa 120 atagtgagtt gatttgtaaa atgaccatcg aaaactggat ttttactccc gaggttatag 180 atcttcacac taaaacggca ttttatttgt cattttatct agaatcattg actttacgga 240 aaatcggctt caaactccct gtgttttgac aatttcccgc cataatgatt ttgcaacgcg 300 cgcgacaatt tcaagtttgc tgaaagttta tttgggataa aaaaaggcag caaatcgtct 360 cttcatacga agaaaaacga caaatcactc taggaattta cctgcataac cagcttaacg 420 tatccacatt caagagaagt tctttagtga atatatctta tcgtctgtgg aggatttaaa 480 gcgaaagaag acatttctac gatcaattcg agttgagaac gacgtatcaa tttggactaa 540 attattttac aaaattgttg gtcaaaactc agagaatgtc ttctttggag gttctgtatt 600 tctggaggat taaaagcgtt gtgtggaaat acaaaatgga gtttattgaa tgatcatgag 660 cgaacaaaat cttcacgaac atcgacgaaa gtcagaagcg aaacctcgcc tcgtgcaacc 720 gtaagcccgt aaggtaaaca aagttggaaa ttctattgag gaaaaaaata aatatgttat 780 ttcccagcta agggtcggtc cgtatcgtga aataccgtga cctcggcctt cggcctcggt 840 cagtattttc aagacctcgg tcacggtatt tcacgatacg gacctcccag ctggtaaata 900 acatatatat a 911 // ID TE-3A_NV repbase; DNA; NEM; 1218 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone TE-3A_NV transposable elements - consensus. XX KW Transposable Element; Nonautonomous; TE-3A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1218 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1218 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1218 RA Kapitonov V. and Jurka J.; RT "The TE-3A_NV subfamily of transposable elements from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC TSDs are not clear; age:94%; it contains a 35-bp palindrome at CC its 3' terminus. XX SQ Sequence 1218 BP; 415 A; 238 C; 219 G; 346 T; 0 other; aatcaaaggg ctctgtgagc caactcgtga atgcaaattt gtttttctag ttattttctt 60 gtgtgcataa aaaaacatat acaggatgaa ttttgaacaa aggatgaaca catccaagat 120 gctgggagta cataacaatg tcctttcttt tcgatgtgat gaaacaccaa gaacagtttg 180 attatttatt attatcataa aaagtaaaaa aaaaaagaaa aaaaaataga cgtcacaagt 240 agggatcgaa cctccggtct ctgacgtctt agacaagcga cagaaccact ataccaccga 300 ggcattgccg aagtaacctc tgagtaaaat tagtttttat cctaattggt atctcaccgt 360 tcgaactgct tttgctagca tgtcaaattt cgccctattc tctccggaaa cagaagttaa 420 atacccgaca taattaatca agctacagtc atatgtattt taagcatgtc aacattctag 480 aaattcgcaa aatcgttatt gatcgtttct tgatgaataa gcgtgtttga acgagttttg 540 tttgatattt agcacttaat ttataaaaaa agaattatgg aaaaaacaac ttatgaaagt 600 ccatactatt tttcttgacc tgcaaacaga ggctttcttt tattaccctg caaagaaagg 660 ccctgctaac agaggctttt cccttgtgtt tctctgactt taaaagtcgc agctttggct 720 atccgctctt tcagcacaaa atcactcttt cagcacaaat tcaaacaaat aacgcgaaaa 780 cccagagatg cgaatcttca agtactagaa gaaggagaat taaaagcttt gctagcattt 840 tacttgtttt gtaaactaac aacttgaatt ggactgaacc gtagaagatc gattgacgtc 900 agtgacgaag gcgcatgcgc acgctcaacc cacatcgaag acttttctgt aaaaactagc 960 ttatatatac tttacggcta taacacgtaa tgaccgtagc ggtcacaggt cgatgacaag 1020 gctcttttat agtactaagc tttaaccgga agttggtcac cggaagttta caggaagatc 1080 taaaaattgc tgtgttgcga aagcacagaa agaccacaaa aagtttacgg atgatcgatc 1140 caacgatctg acgatcgagt gacacagaag tccctccaat aactcgtaaa tgctttgcaa 1200 gcattcacga gttaaaaa 1218 // ID CR1-5_NV repbase; DNA; NEM; 3798 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-5_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3798 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3798 RA Kapitonov V.V. and Jurka J.; RT "CR1-5_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 399-399 (2007). XX DR [2] (Consensus) XX SQ Sequence 3798 BP; 1044 A; 937 C; 834 G; 983 T; 0 other; gcggtcagcg gtaatcaagc ctatcggacg tgttcaattc tgttccgatt caaatgtgat 60 tttgccatct tttcactatg gcaatggctc tccaactacc cataactatt cttgccatcg 120 tacttaatgt actggacagc tcagtcagcg aggtttgttc gtctgaggcg ccattcgcga 180 tacccggagt tcaaggtaac ttggagttta aagccagttc attcaaagtc aatcagccaa 240 gaagctctgc atttgcattc attaattcac tgtcaaggca gcgtcacggc cgaatgcttg 300 gccctgtttt gaacgattct acgtcgcctc gcatttcatt gatccttata attatggcaa 360 atgactgttc aacgatgaac ccgggccccg ttaaagatcc ttgtggcatc tgtcaaaagc 420 caactagatc gaaccaaaga gcgattcagt gtgacgagtg cgacatgtgg tatcatacga 480 agtgtattgc catgacggct caatcttatg acagattggg tagtgactcc cagcttgcgt 540 ggctgtgcaa taaatgcctt ttcccaaact tctcgacgac gttcctgtta aacgaaatgg 600 atctttgtca cgaaaaccgc tttgaaagtc tctcatctga ttcaacaata agcagcgacc 660 cgggatcacc tttgtttacg tctagccctt caagattcca tgatccccaa gggaaccgag 720 tcaagataac acggagaaag ttaaagatcc tctctcttaa ctgtaacggg ctaaaaagcc 780 cggccaaaaa gtcgcagttt caatctcttg tcgcactgca tgacccggac gttattctcg 840 gctgcgaatc aaagataaac gctattattc ccacttattc aatctttcct gaaaattatg 900 aagtatatcg gagagatagg acggcttccg gtggaggtgt ttttatagct gttcgcaacg 960 atctgactgc agtggaagaa cggggtctcg acgtcgatgg ggccgaaatg ataacagcat 1020 ctatccatct cgcaaagcgg aagaaacttt ttctaactag tttctatcac cccccaaccg 1080 accaggaggg actcggtctg ttagacgact acttatgcaa actgttcacc aaataccagc 1140 agtgccctaa tgcaatcata gggggtgact ttaactgctc gggtattgaa tggtcaagcg 1200 gcgaggctgt actcactcca cctgttcaca gctgggacct cgcccttatt gcgttggcgg 1260 aaaaatatgg attatcacag catgttaagt ctccaactcg atatgatagc ttcttggacc 1320 ttgcattctc gtctaaacct ggccttgtta atgcatgtca tgttacgtcg ggtctaagtg 1380 atcacagcgc ggttttattt gaagttgacc ttgctccaaa atacatcccc aagcccccac 1440 gtaagattta tctttaccat aaagcggaca tggctgcgtt aaaagaacac atcgcatcct 1500 tccataggga ctatgctgca tcgcacatgg aaagatccgt ggaggaaaat tggaatgcta 1560 tctcaacttg cattagtgat gctatggaga ggtttattcc atccaagact tcgaaaacaa 1620 agcgacacct cccctggata ggcgcgccca tcaaaaaatt gatgcgcaaa cgcgaccgcg 1680 ccttcaaaaa gtccaaacgg actgggaagg aaaaagacca tgtgaactat aaacgcctaa 1740 ggaacattgt aagcaacagc atcaaggaat cacacaataa ctacgtgagc gagattatga 1800 aggggattga ccttgaatct gatgaaccta ggccgaacgg agtgaagagg gcgtggtcat 1860 atctgaaact cttacgctca gagtcactag ggatacccac tctattctgg gagggacggg 1920 tttgcgcgaa tgacaaatgt aaagctgagg cgctaagggc acagtatgac agtgtattca 1980 cgcaggaaga taatcttaat gttcccactc tcggcgcgtc ccctcaccaa gacatcaaag 2040 acatctcctt ctctgttaac ggcgttagag tacaactcga taacatccgt gtagacaagg 2100 cgtgtggccc agatgccgtc ccagccagag tcctgaagga ggctgcaaca gaactcgcac 2160 ctatccttac attactgttc gagcagtcga tgaaggatgg cgtactccct actgtgtgga 2220 aggacgcgaa catatcagcc atttataaga agggtctaag atctgaccca cagaactatc 2280 gcccagtatc tttaacatcc ttggtctcca aactgatgga acacattgtc tcaaaacaca 2340 taatgtgtca cctgtccgca aacaacatca ttactcagct acagcatggt ttcctgaaag 2400 gcctctcttg ctccacccaa ctaatatctg ttattcatga ttggtcgtcg gtcctgaacg 2460 accatgggca agttgacgtg gtatttcttg atttcgccaa ggcgttcgat tcagtccctc 2520 acgaacgcct actgatcaag gccgagttct atggaatcag aggaagactc ttactgtggt 2580 taaggcactt tcttaccaac agaagacagc gagtggtcgt gaacggggcc tcttctacct 2640 ggtcccctgt gctatcaggc gtgcctcagg gcacggtctt aggaccgata ttattcctgc 2700 tcttcataaa cgacctgcca tctggcatca aatcacacgt gaaactgttt gccgacgaca 2760 gcgtcctata ccgcccaatt aagagccttg atgaccacca cgccctacag caagatcttc 2820 accaccttga acgatgggca gaacagtggc agatgaagtt tgcgcccaaa aaatgttacg 2880 tcatgaccat cactttaaaa cgcgacaagt cccagttccc ataccatttg tgtggaacca 2940 cactggaggg ggttagcgtt caaaaatacc ttggagtcca catttctaca tctctcaatt 3000 ggtcaaagca cacggaggaa gtcaagaaga aggctaacgc agtattgggt atcctacaaa 3060 gaaatttatc ttcctgccca gctgcggtta aagagcaagc ctacaaggcg ctggtacggc 3120 cactggtgga gtacgggacg gaagcatgga gcccccacac taagaaggac attcaaaaag 3180 ttgaatctgt acaacgccgc gctgccagat ttgtgtgcaa cgactacgga aggcatagca 3240 gcgtcacgaa tatgctgaca cacctaggat ggcaccagct agaacttagg cgaacagtat 3300 tcgactctgt catgttttat aagatccacc acgggctagt aaaaatcgat ttcccgagtg 3360 atgtaattcg caaacctggt tcctacgcaa ccaggtcaag cgtcaggaac acatgccaac 3420 ttacactccc gcctcccagt ataaaccaat tcaaatactc cttcttttca agaactatcc 3480 ccgtttggaa ctctctgccc caacaaatgc tagacctcag ctctgtcgat gaatttaaga 3540 tagccgtcac tggcgagctg gcccggcaat gatttagttg ccatactacc catgtacatg 3600 tgtattgtta tctcatcatc ttatcgaatt gttacgttta tttatttatt tattcattca 3660 tttattgttt cttttgtttt atttattatt tatttattat caaccgtagt atgtgcatgg 3720 gtagttggta cgctgcccct cattgccgga ttagctcgct agtggcaatt attgtattta 3780 aaggttaaag gttaaagg 3798 // ID DNA-9-25_NV repbase; DNA; NEM; 244 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-25_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP283; DNA-9-25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-244 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-244 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-244 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-25_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC COpies are 82-93% identical to the consensus. Originally, it was CC reported as the NVREP283 unclassified DNA transposon [1,2]. XX SQ Sequence 244 BP; 58 A; 60 C; 61 G; 65 T; 0 other; tagcctcctc cgcaggcgtc tcgagtgatt tgggaaaaag gctttttttc gatttcgggc 60 ttcctgtggc gtgttcaaga aagagtgggg gcctgggtta gaggaaaaag ggattttgac 120 tcatttcttt tgtccccctc ccctcttccg gcttccggtt ccggttcaac tcgccacagg 180 aaccccaatt cataaaaata ctgaaaaatt acaaaaacac tcgagatgcc tgcggaggag 240 gcta 244 // ID DNA-9-6_NV repbase; DNA; NEM; 203 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-6_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-203 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-203 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-203 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 203 BP; 47 A; 53 C; 60 G; 43 T; 0 other; tagcctcctc cgcaggcgtc tctgaacgtt agaaaccgag actcgggatt cctgtggtcg 60 acaaattcct ttgttaaggg ggggagggga caatgccaaa agcggaaaaa gagacccgct 120 cgacgcatca ccacaggaat cccgagcgcc tgtgtttctt ttctgctgct ttctgggcaa 180 agcgatgcct gcggaggagg cta 203 // ID CR1-15_NV repbase; DNA; NEM; 919 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-15_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-919 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-919 RA Kapitonov V.V. and Jurka J.; RT "CR1-15_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 392-392 (2007). XX DR [2] (Consensus) XX SQ Sequence 919 BP; 294 A; 219 C; 184 G; 222 T; 0 other; gtcgacggtc cgtctctttg cggatgacac catcatctac ctgactgtaa caagtgaaga 60 aagttgcaaa ctactgcaaa aagaccttga tgttcttcag gaatggggta aaacctggaa 120 aatggaattc aataccacta aatgcgaagt gctgcgaatt aaacccaaac ggcaattcca 180 acacacttac taccttcatg gcgttccact taaggaagtc aaacagagca aatacctggg 240 cgtacaaata tcacacgact taaaatggaa taaacatata gacgatataa cagcgaaatc 300 aagcagaact cttggcttcc ttaaacggaa cctgaagata aattccccaa cacttaaagc 360 aaaagcctac caaggtctgg ttcggccgaa attagaatac tgtgctagtg tgtgggatcc 420 ccgttcacgt gttgaaaata atggatcgta caagatagag atgatacaac gccgtgctgc 480 gcggtggtgc ctacggagat acggaagaac agatagtgtt actgcaatgc ttgatgccct 540 aggatggcgg actttggagc agcgaagagc agatatccga ctgacaactc tgtttaaaat 600 caccagagga ctactctcag tcaatactca aggtctccta cgtcccgtaa cccgcaaaac 660 ccgtcgtagt catccagaat cgtttatccc gctaagtact tcttcggcat ctgaacacct 720 ctcttttttc tcaagaacaa taatccaatg gaacaatctg cctgccctct tgtttaacga 780 accgtgctct ttacctattt ttaaagacaa aataagccgt ttaactcacc ttcctgtaaa 840 ttaagctata atctgacccc cccagccaac aatcctcaaa tgtgaggggc aggctgtaat 900 tggtaagtaa gtaagtaag 919 // ID Penelope-1_NV repbase; DNA; NEM; 2516 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-1_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-1_NV. XX NM Penelope-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2516 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2516 RA Kapitonov V.V. and Jurka J.; RT "Penelope-1_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 631-631 (2007). XX DR [2] (Consensus) XX CC A 5'-terminal portion is not present. XX FH Key Location/Qualifiers FT CDS 1..2166 FT /product="Penelope-1_NV_1p" FT /note="RT and GIY-YIG nuclease domains." FT /translation="PDSKFFLLSTLRLLIMEKFHINYSTKNIPLPSRSDYL FT QRLIEKTEHFLRRMRWKAHFFLNTDTASTSKETYGFRSTKNPPPVEELKEF FT EEDMLKMIQSVKFKNLNTPFLGKLKEDTDNIKKEPKLLIPADKTTNFYKLE FT PATYKNLLEKEINKSYKKAPSETTQSVHKKNKEIATKLDLDDRMDTTANKQ FT AFITLKDHKPNFANKPTCRLINPTKPEIGKISKKILDRINSVIAKKRNFNQ FT WKSTKAVIDWFKAAENKHQLNFICFDIVEFYPSISQDLLSRALDFASNYDE FT ITPDEKEIITHSKSSFLVHNQTPWQKKGNTIFDVTMGSFDGAETCELVGNF FT LLSQLQDLNMNVGLYRDDGLAITNATPRATENLKKELCRIFNNNGLRITIE FT ANKQVVNFLDVTLDLKRNAHQPYTKPNSSLQYVHRESNHPPSITKNIPAGI FT NRRLSALSSDQASFDQTAPPYQKALDDSGYNYTLRYEPNTVTNRKTRKRNN FT ILWYNPPFSKNTSTNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMN FT NTKQIIDNHNKRIITASSATEIASSAPTTTNNKTCNCRQKDTCPLDGNCLQ FT TSVIYQATVTRKDNNTSETYVGLTENSFKTRYRNHTASFRHAKHRNSTELS FT KHVWTLKDNMIEYFISWRILSSHSAYNSTTKRCNLCLKEKLTIICQPKLST FT LNKRNELVSSCRHRNKALLRNN" XX SQ Sequence 2516 BP; 870 A; 757 C; 378 G; 511 T; 0 other; ccagactcca agtttttctt gttgagcact ctacggctac tcattatgga aaaattccac 60 atcaactact caacgaagaa tattccccta ccatctcgca gtgattacct ccaacgcctt 120 attgaaaaaa ccgaacactt tttacgccga atgcgctgga aagcacactt cttcctaaac 180 acagacaccg cctcgacctc caaagaaacc tatggattcc gctcaaccaa aaatccgcct 240 cctgtagaag aactgaaaga gttcgaagaa gacatgttaa aaatgatcca gtcagtaaaa 300 ttcaagaacc tgaacactcc tttcctgggc aagctaaaag aagacaccga caacattaaa 360 aaagaaccta aactactgat ccccgcagat aaaaccacaa acttctacaa actagagcca 420 gctacctaca agaatctcct agaaaaagaa ataaacaagt cctacaaaaa agcaccctcc 480 gaaacaacgc aatctgtcca caagaaaaac aaagagatcg ctacaaaact ggatttagac 540 gatagaatgg acaccacagc caacaagcaa gccttcataa ctctcaaaga ccataagccg 600 aacttcgcta acaaacctac ctgcagactc atcaacccca caaaacccga aatcggaaaa 660 atcagcaaaa agatcctcga ccgtatcaat agcgtaattg caaagaaacg aaacttcaac 720 caatggaaaa gcactaaagc cgtcattgac tggttcaagg ctgccgaaaa caaacaccaa 780 ctcaacttca tctgttttga cattgtagaa ttctacccat ctatcagcca agacctacta 840 tcaagagcac tcgacttcgc ctccaactat gacgaaatca cccctgatga aaaagagatc 900 ataacccact ccaagagctc cttcctggtc cacaaccaaa caccctggca gaagaaaggc 960 aacacgatat ttgatgttac gatggggagc ttcgatggcg cagaaacctg tgaacttgta 1020 ggcaacttcc ttctctccca acttcaggac ctcaatatga acgtaggact ctaccgcgac 1080 gacggactag ccatcaccaa cgccacaccc agagccaccg aaaacctaaa aaaggaacta 1140 tgccgcatct tcaacaacaa cggactccga atcaccattg aggcaaacaa acaagttgtc 1200 aatttcctag acgtcaccct cgacctaaaa cgtaatgcac accagcctta tacaaagccg 1260 aactcctcgc tacaatatgt ccaccgtgag agcaaccacc cgccctccat caccaagaac 1320 atccctgctg gtatcaacag acgcctatct gccctatctt cagaccaagc ctcctttgac 1380 cagaccgcgc caccttacca gaaagcactc gacgatagcg gatacaacta cacgctacgc 1440 tacgaaccca acaccgtaac caaccgtaaa acccgcaaac gcaacaacat cctatggtac 1500 aacccgccct tcagcaagaa caccagcacc aacatcggcc acagattcct caccctgata 1560 gacaagcact tcccgaaaga caaccacctc cgtaaaatct tcaacagaaa caccatcaaa 1620 atcagttaca gctgcatgaa caacaccaaa cagatcatcg acaaccacaa caagcgcatc 1680 atcaccgcat cgtcggctac cgagatcgcc agctccgccc ctaccactac caacaacaag 1740 acatgcaact gccgacagaa agacacctgc cctctagacg gaaactgcct acagacatct 1800 gttatctacc aagctaccgt aactcgaaaa gacaacaaca cctcggaaac atacgtcggg 1860 ctcactgaaa acagcttcaa gaccaggtac agaaaccaca ccgcatcatt ccgacacgcc 1920 aaacacagaa actccaccga actcagcaaa cacgtctgga ctctcaagga caacatgatt 1980 gagtacttta tttcatggcg cattctttct tcccactccg cctacaacag taccactaag 2040 cgttgcaacc tctgcctcaa ggaaaagctg acgatcatct gccaacccaa actatcaact 2100 ctaaataaac gcaatgaact cgtgtcctcg tgccgccaca gaaacaaagc cctgctacga 2160 aacaattaga actgttaatc ccgtcaccgt taaattttcg cgctatcaat ttttcacacg 2220 ttccgcactg ttagttttcg ccccgcatat ttaatgtaac tcgctattgt tcctcttacc 2280 gccttagcta aaactatcag tctattatta tgtaaatttc aatgttaata gtatatatac 2340 gatggtagga atattctcat taaatcccct gatgagtggg caaccacgaa acagacctgt 2400 agggaaacct atgtagtttg tatttttctc aaaccaacac tatacaccgc tctactttcg 2460 agtattgagc actttctatg aaagccttca accatcattt tatatatata tatata 2516 // ID DNA-5-3_NV repbase; DNA; NEM; 831 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-5-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-831 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-831 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-831 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 831 BP; 255 A; 165 C; 157 G; 253 T; 1 other; ctctgtgcgc gctagcgctc gccacttcgc aaaatgcgaa ttccttcccc atgtggcgaa 60 ttctattgct aactacgttc gccacggtgg cgaatgcccg tttcctatac ttgtgaattt 120 tgaatcacga tctttcacct cgaaatcata tttctaatac gtcaagataa cgtactgatg 180 aaaatcgcaa atcggaaaaa cacaggccga agaatgaact ctctctcgtt ttgcgccgtt 240 tcctagttcc gggtagcata atattttcac gaagaggata attcttgaca atctccagtt 300 actattggtt accatattgt tactatattt cgcgggcact tatttcgcca aaaaaaggat 360 cggcatattt cgcgagattt tgcgatttgg gtgcaaaatc attttcaatt tcgcaaaaaa 420 atktaaaaat gcatttctcc gagaatttga ttaaacatta caacaaaaca aaactgtaga 480 aatcatattg tgcttgatgc tattttctaa cacatttaca tacatcgaag ctgtgagaca 540 aaagttaaga atcataagtt cttaatcgtc ttggtcttgg tcgtcatttt aaaaaaaaaa 600 acaagggaaa caaaacagaa agggtattga attttgcgat attaaagttc gtaggaatag 660 gatttcgcgg ggcttaaatg tcgcgaaatt aaagagacca ataaggtatt ttgattaaat 720 tgttcgctat agcttctcgg ttgtggctaa ttccccatca gtgtggctaa ttcctttggc 780 ttaaaattag ccacagtggc ttgtgccctc aagatcctag cgcacacaga g 831 // ID Kolobok-N14_NV repbase; DNA; NEM; 401 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP98; Kolobok-N14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-401 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 355-355 (2007). XX DR [1] (Consensus) XX CC Kolobok-N14_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N14_NV transposon CC is characterized by 15-bp TIRs (1 mismatch) and TTAA target site CC duplications. This family is composed of several hundred elements CC that have been transposable for a very long time: the youngest CC and oldest elements are ~10% and 25% divergent from the consensus CC sequence. XX SQ Sequence 401 BP; 126 A; 67 C; 74 G; 134 T; 0 other; aggggcactt gcacggtgaa gagtgatttt agtgttattt cggcaatcta aaaaacagtc 60 aaaatcatgc ggaataatta aaataactat ccaggtttat taaatgacct ttgatctttc 120 agataaatac aatattgtgg tttgaacgcc tcacatcgag cggatggaaa tggattgaaa 180 atagtacttt taggtttcgg aacaggctgt acctttactc aaaccttgaa attgcataaa 240 taaaccaact agatcctttg cataaaatcc cttttacgga gaattggttc atttctattt 300 attacgcttg ggcgaagtaa tcaggaagat tttacgttgt tttgttacac actttttcat 360 attttattaa actttcttag aacaagcgtg cgagtgcccc t 401 // ID SINE2-2_NV repbase; DNA; NEM; 354 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone SINE2-2_NV non-autonomous non-LTR DE retrotransposon - consensus. XX KW SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; KW SINE2-2_NV; TE3-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-354 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-354 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-354 RA Kapitonov V. and Jurka J.; RT "A family of SINE2-2_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [3] (Consensus) XX CC The pol-III region was derived from tRNA. This family was CC classified originally as the TE3-2_NV transposable element [1-2]. XX SQ Sequence 354 BP; 61 A; 90 C; 85 G; 118 T; 0 other; tgggagccta ggtggcgcag ttggcagagc gtcgctctgt agtgcctgtg cctctcacca 60 ctgggttctg ggttcgattc ccggttccga cgtgagttga gttagttggt ctcgcctttg 120 ctccgagggt ttttctccgg gttctccggt tttcatccct ccacaaaacc aacaatttcg 180 atcttagctg tgatccgtgg tcagacatga gttgtatggc ggctgcctga ggcgccttcc 240 tatatgcctt caactcgacc acgtctgaat ctgcgctctc gtaattcagc ttcccagctg 300 caatgagagt gattagctac tccaatttat ttatttattt atttatttat ttat 354 // ID L1-2_NV repbase; DNA; NEM; 5553 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone L1-2_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5553 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5553 RA Kapitonov V.V. and Jurka J.; RT "L1-2_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 606-606 (2007). XX DR [2] (Consensus) XX SQ Sequence 5553 BP; 1832 A; 795 C; 1292 G; 1634 T; 0 other; tggcggcctt agcgtgaaga cgcgtttttg tagggctgtc cgccaactca tgccttttgc 60 gaaggagcgc tagaatagtt tgcaaacaga agtgttttaa tgaaaaagcg taaggaacga 120 ggatccagta gctctagcgc ctcaacggta tcgccccagc caaaaaagtt tatggaagta 180 tttgagaagg aaacaatggc ggagaacggg gaagttagca agtctactga aaagcagcca 240 gtgacgcttg agtcaatctg gttagtcctt ttagaagttc aagcaaacac ccaaggttta 300 aaggaagaag ttggggattt gaagagagca tttagtgtgc aggaagagca aataaaggat 360 ttggagaaga agagtgtggc gctagacacg agggtttcca ctctcgggaa acttgttgtc 420 cgagttgagg aaaacgcggc gaaagaagaa tacatagaaa agttggaggt taagctagat 480 tcattggaac aatataccag gaagaactcg atagaaatag cgggggtgcc gagtggcact 540 ttttcatgcg aggaagtcgt aataaatatg gcaagaatgt tgaaggtgga tatcaagacg 600 gaggatattg aaatttcaca tcggctaaag aagaggaagc aagaagagtt cagtcctatt 660 atcgctaagt ttatttgtca caagaaaaaa gcggcgttct taaaagctag gaaaggcctt 720 aaagatgtgc ggtactggga tttggatctc gtcgggctgg agaaaccagc gtgcattgat 780 gcgaagcttt atgggcgcat atttataaat gaaaatctaa cgccagctag aagaaggatc 840 ttggggagag cattggctat gaggaagaag aagatgctgt tcagtgcttg gtcgatagac 900 ggaaagattt tcatcaagag gtcagaacaa gggatggttg aaaaagtcga gtctctgcaa 960 gccctggaca cagcttgaga acttgagaac ggtacaaaat gcataattac tgtaagtaat 1020 tattttgttg ttaagtcgta aggaactgtg ggactcgttt atctttctgt tcttcattaa 1080 cggaaaagtt tgaaaatggg tcagggacgc tcgaaggaaa gttttagtgc attattgcaa 1140 agctagggca gttttaagga cggtgcaaaa tgtatgatta ctgtaattaa ttttgctttg 1200 ctcagtcaag ctgaaaggaa ctgccaaaga ctagctattc ctttgtagtg gcagcgtaaa 1260 attagaattt gaatttgaga ctatggttgg ggaagttaaa aatttttcta aaaatattta 1320 acgtggtatg agtctggcaa ggctcagtcg gctgtgggat ccatgggtct gagccttttg 1380 atgaatgcaa tttatttaat tgtattcatt cggctattta tatctgtatg tattgtgatt 1440 gtgaaatgtt ttgttttgtc gcgtattcta tgttgtatcc cttggctaga aaaaataatg 1500 cgcaatatta tctttttaga taatgggtaa tgatttcgag tttaaaatac tttctcttaa 1560 tgtccggggt ctaggtgaat ataaaaaatg tcggaaaatg tttcattgga ttaatggaca 1620 cgggggtgac agtggcgtct cgtttttaca ggaaacgcat agcacaaaag aagttgaaaa 1680 taattggaaa aatagatata ggggagaaat agcttttgcg catggaaatt ccaagagtag 1740 aggtgtagct attttatttg ggcgtaaact caattaccaa ttacaggata ctattgcaga 1800 ttcaaatggg aggtttctga ttattcgttg taaaattcaa aatggagact tcctacttat 1860 taattcttat gctccgaacg atgaagcatc acaggtcttg ttgtttaagg aaattcaaat 1920 taaacttcag tcgcaagcgt atacaggttc gcctaatatt gtgtggggag gtgattttaa 1980 ttttgttttt gacttggagt tggaagcagt ttttggtaat cctaagttga aacaccgctc 2040 aattgcagcg gttgaaataa tgttggatga atataactta tgtgatattt ggagacttcg 2100 aaatccaaca ataaagcgat atacgtggag aggctcggca cagggaaaac gaagttcccg 2160 gggaaattat attcatcgta gacttgatta tctgtttgtc tctgatgacc tccaatcatc 2220 tattgacagg tgcgatatta tcccagcacc ctcgacggat cattcggcgg ttacagtaga 2280 aattaaggct gacggtaacg ttagaagagg gccatctttt tggaaattta ataattcctt 2340 attagaaaac agtggttacg taaatgagtt aacaaaatgc atagatattt ggaaacaaga 2400 gttagttgaa gaaggaattg ataattcgca attaaagtgg gaggttatga aatacaagat 2460 aaggaaattt agtattagtt tttcgaaaac attggcgcgt aaacgacggg aaaattacag 2520 ggaattagaa gaggagttaa aagttattga aaacatagtt gggtggactg aaaatgatga 2580 attatcaaaa aggcatgaaa tagcattgcg taatttggat gagttgagta attacattac 2640 agaaggttta attatccggt cgaaagctga atggcacgag ttaggggaaa aaaacacaaa 2700 gtattttttg tccttggaga gacgcaacaa atctaaaact catattaaaa aaaatgtgga 2760 agatggtaag gaaatttcag ggcaggcaga tatccttcaa aatcttcaga gttatttcag 2820 caggctatat gaaaggaaaa gtgtaaaaac agaggaggag tgccttgcgt ttttgtcgga 2880 actaaacata ccgcgacttc aggcaccaca tagggataaa tgcgaaggcc ttctatcggt 2940 gactgaatgt ttcaatagct tgaaccagat gggtgcgtcg aaaactccgg gtgtcgatgg 3000 actaacgaaa gaattttata tcgcgttttg gtctgcctta ggtacagatt tggtcaaatc 3060 tcttaatcat ggttttacac aaggccgtct aagtacaacc cagcggcaga tgatagtaac 3120 attgttggag aaaccaaata aggacacaag gtctcttaat gcctggcgcc ctataagcct 3180 gataaacgtt gattctaaaa tatgcagcaa agtactatgc aatcgtttgg tagatactct 3240 tccgtccttg attcacactg atcaggcagc atttgttaaa ggtagaacga tagacgaacc 3300 aattagaatt atagaagatg tgatgaatta tgtaaaaaat agaaatgaat cgtacataat 3360 gtttgcagcc gattttgaaa aggcttttga ttctatagaa cactctttta tctatgcaac 3420 cttgagacag tttggttttg gcgagaattt tattaggtgg attcaagttc ttttaacaga 3480 taacgttagc tccattttga ataacggtca cgctactacc ttcttccagc taggcagagg 3540 aacaaaacag ggagatccag tgtcaccgta tttatttatc ttagtgttgg aggtattagc 3600 aattatggtt aggtcatctc cggaggtaaa aggcctgaaa atcggaaagt ctgaaataaa 3660 aatgacgatg tttgcggatg atacaacttt atttttgaaa gatatgaatt ctttagaaaa 3720 attgttagag cttctaagga tttttcaatc ttattcgtcg cttaaaatta atctaacaaa 3780 atctgaagca ggatggctgg gcgcaaaaaa taaagatagg aaaaggcaag gcataaaatg 3840 ggtagatctt caccaaaaag gtattacaat tttagggatt tatttttcat ataatgagag 3900 actgtatgat gaaaataact ttaagcgtaa ttttgagaga tttaaatctg tgttagcagt 3960 ttggaagttg cggacattaa cactctatgg aagaatccat gtgttgaaaa gtttagcgct 4020 ttctaagttg tattatgtgt gctccaaatt aagtgttagg ggagatttta ttaagcaggt 4080 ggatacagcc ctgaaagact ttatatggaa tgcgaaaaaa cctaaagtga aatacacaac 4140 aattataggt gaatatgatg atggtggctt gagagctcct gatttctttg catcatttag 4200 agctagtcgt gttacttttg ctttaaagtt gtcaaatgag gaggagagaa catataaggt 4260 tttaccaaga tacctcttaa aagtaattgg aggtgtggga actatacgcg acaattttga 4320 tataaatcgt cttccggacg atatatccgg ttattataag gaggtgtttg ggatatgggc 4380 cgagctgttt tcaaacccaa taaatgaatc ggatttagag gatgaagtgc tgtggaataa 4440 caagtatatt aaaattgggg agaagtctgt tttctttaga tccttttttg aatgtggcat 4500 ccgcacagta agagatttat gcaatgaggt gggtcgtttt gagtggcaga tatgtttgaa 4560 gaaaggtgtc ccaggtacag ggtattttaa ctggttatct ttatgtaacg ctattccaaa 4620 agtatggaaa gataagttga gagataatcc tggcttggta ggacagtcta aaccagcagc 4680 acgtttgtta cggttaggta atgagagata cgaaatagga aaatttaagg ctaaacaggt 4740 atataatcat atagtaagaa tgaagtttaa accgccaact gcacagttaa acattctcca 4800 aagaatagga ggctctcctg agtccatcga ttggagacaa gtttatcgta gaatttatac 4860 catagctaga gacacctatt caaggtcctt tcaatataaa attcttaaca attgcctttt 4920 tatgaacaaa gatctgtttc ggtttggact agtggatagt ccttcgtgct cttattgttt 4980 ttcccattta gaaactgttg atcacatctt tattgagtgt actaagacaa gaaatttata 5040 cctagacatc caaaaatggt taagtgcctt caaggtgcaa ctcccacatc tatgtattaa 5100 agatataata ctaggtgtgg aaaatgaaaa cgcagcggtg aactccgtga tcctaaatta 5160 taaactcctg gtttataaaa ggagggaatc acacaaattg ccaaacttat actcatttca 5220 actattcctc agagacatag agaaagtaga aaggcgggct tcaaaattga gtaataaacc 5280 attgcagcat ttgaagaaat gggaattgat aatacatgca ttaagctcta ccgggataat 5340 gtagtttgtg ttgtggttgt gttgtgtttt ttgtatatgc aaatcaaatg aaagagagaa 5400 aaataccgag tacataacat ataacataag tttaagttat atatggagat taacttaagt 5460 tctttttttt tacaataatc atataagaac tttgcatatg tttgtgtgtg taaaaaatga 5520 tgaaacgaaa taaaaagttt taaaaacaaa aaa 5553 // ID DNA-3-5_NV repbase; DNA; NEM; 440 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3-5_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-440 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-440 RA Kapitonov V. and Jurka J.; RT "DNA-3-5_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 395-395 (2008). XX DR [2] (Consensus) XX CC DNA-3-5_NV elements are flanked by 3-bp targets site CC duplications. CC The consensus sequence contains long TIRs. Termini of DNA-3-5_NV CC differs CC from elements that belong to the Harbinger and En/Spm CC superfamilies, which CC are also flanked by 3-bp TSDs. It is likely that DNA-3-5_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-3-3_NV, CC DNA-3-4_NV, DNA-3-6_NV and DNA3-7_NV. In addition to 3-bp TSDs, CC all these elements CC have the 5'-TAG and CTA-3' termini. XX SQ Sequence 440 BP; 136 A; 85 C; 75 G; 144 T; 0 other; tagtccagtc aatctaatgt ttaacctaaa agtaattgca acacaaatga tttcggtctt 60 aaatgacaga gtagcatgtc cttaataact tcccaaaagt tctccaaagt tctcttgggg 120 gaacatctcg aaattcaaca ataaacaatt tcttttgtca gcaatcttgt attctattgt 180 tattcatggc gcactaaccc tccgcaaacg cactctcgac gagatcgctc tgccagtgcg 240 ctcatgaata acaaaagaat ccaagatggc cgacaaaaga aattgtttat tgtcaaattt 300 cgagatgttc ccccaagaga actttggaga acttttggga tgttgtttag aatgtctttt 360 cttatcattt aacaataaaa ttgtttgtgt tgcaattact tttaggttcg gctataaatt 420 ttcgtagatt gactggacta 440 // ID Sola3-2_NV repbase; DNA; NEM; 7618 BP. XX AC . XX DT 28-JAN-2009 (Rel. 14.02, Created) DT 28-JAN-2009 (Rel. 14.02, Last updated, Version 1) XX DE Sola3 DNA transposons from Nematostella vectensis. XX KW Sola; DNA transposon; Transposable Element; Sola3; TTAA TSD; KW Sola3-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-7618 RA Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.; RT "New superfamilies of eukaryotic DNA transposons and their RT internal divisions."; RL Molecular Biology and Evolution 26(5), 983-993 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(2900..3940,4030..4815,4944..5321,5398..6447) FT /product="Sola3-2_NV_1p" FT /translation="IQETSDESIVEKFNELSLAGGDASFFPSDTTSTASSD FT EVKLSTLTVRRGKLNDFLHACGKEENIGPVKKSWESMAIKAHRRHASRASN FT AIVSVLEVMVPDDPAGLWQEVQTSKKVEKALGLSSSFADALYLRALAETYE FT NATTWATKWQALAVMVDLVSLKELRHYLPNLSEYRYKAAKIHLLRFGRGAP FT VPVDRRPRMRIDEERLDFLLSFITSPHIIQDLPFGQKYIRLSNGDLLETPN FT VIRSMIPARIHMQYTQYCKENAQRSLSETTVRRILKVCSATVRKSLQGLDY FT ISAEDGKSFDDLIEVVRKLEGVGGCDHSWVSTCEGGLKQGKQYLKSDYKVS FT IYSAKVLQDNELFIIFFKRCHLNAILKYKLCVLFQVHVADACNVADHCTAY FT ALSDPKEPMYATPPCEHQHDVFCSSCSELDVTLTAIEAALKASSGKVPAEQ FT HDELLFTYRTCIAAIHAWKSHQLRSIQQDKPRLSIMSGITESEVLIFQDWA FT MKYLPQKYRETQADWFGKRGISWHISVVIRRSSTGIAEHQIFVHIVENCSQ FT DAMTVISIMEHTLREIKASTPGVSTAFYRQDNAGCYHNAAMITACRFMESR FT TGIKVIVYSISFFSFSLKVERVDFSDPQGGKGPCDRKAATIKAHVRRYIAE FT GHDVTTAADLRHAILSHNGVPGVRVALVDASSLRPLSSEAKIDGITKLNNF FT SLSDKGLTMWRAYDIGIGRTVPWQRLQGNIFFRRHIKKLYAQRISVSIEIL FT FFFLLNINISLVPATVELVSFESAFSPGGFIAIKSRRIKPVELSVASGLSS FT VQTDCQSDEADDDDESEEEIEEESPKLFCCPVEGCIKAYHRHSSLEDHIQF FT GKCRIVEERYTLFDRAAIAYREKLLQGDELQPTLEPVLQEKASNDLCLGWA FT LKTARKATRFSEKQKAFLDEVFQKGIDTGHKLDPATAALEMRYAKDLTGKR FT RFQVDEFLSDSQVQSYFSRMASKRRKALDSTQSEGDSRDEDAKAADEQASY FT ASARALILEECQLQHPIEYESINLCQLYEKGKLSTLNLVLLRQVSDFLDLD FT IDPKLRRKAPIIDKISAVIKQCSCAHN*" XX SQ Sequence 7618 BP; 2280 A; 1636 C; 1609 G; 2093 T; 0 other; gtgcaccagt cccttagatt caactgagga gttccaaata agaaatttca aaatcgctca 60 aaattggttt aaagttagcc cctggttctc ttatcatggt taaaaagttt gagttacata 120 caataaatat ttttcgagaa attccgaatt tacgattttg cctataaaat cgccgatttg 180 ggggcatttt tcaccttgcg taaaaaatcg caaaatattc tttaaatata cgcggaatta 240 aaaatagcga tacagatcct tagaaaggag ttgataaggt ataaatcgag tggtttcttt 300 actttttccg gcaaaaaaaa gtatatttta ttgctgtcta aacatgtcaa taaaaaatgt 360 cgacttgaat aatagtctaa attaggggct tataaaaccg atggtacatg gattttcgca 420 gaaattttgc actttgagca aagattggtg ttatttcttt cgattcagca aataaaaaat 480 tgggggaatc aaattcccga attataatga agccgaacgc aaccccatgt cgagctcaaa 540 taacacgcga ttttcttgac agccgtcttt attagataca catacctgtt tgtacaggag 600 acaaatcaca gaaaataaac tctacccttg ctgtatacta atctcagatg ctgtataatt 660 gtcttggttc atccttggaa gttactggaa gtcaataaag acattacaat gaaaaatatt 720 tgctattttg tacagatttc agttaagaac gcctgccgga atggcaaact ttgaaggatt 780 tgtttgggtt ttaaagtttc tttacgctcc attgaagtaa aagatattca agcacgtcag 840 ttcttacctt ctgccaagag gtttctggga aaaaggccga tttgtaagat taatttcaat 900 gcaaaggtca agtacttgaa cacgagtctg gtttcagatg acaacaactg atcagcggtc 960 taccagatga gaatgcgtga atttccaaag gaaacccgat ataaagaata gttcaactag 1020 tcggcttgca gtttttattt tagattgttt cttattttat gttcttcatt ctaaaaaaaa 1080 acatattaat gatgccaaaa ttattttaaa aattaatatg ggatatgtat atgcgtatgc 1140 gatacttgac attatcatgt cactcacagc agggcgtcgc ccgaaagtag gagatatctc 1200 ttctcagctg gctcgcctat gttgtgaaag cgtaattcta gataggaaac accaatccag 1260 gaataaaaaa caattaccac aatcaatcac gcttggttga cataagctgg aagaattgtc 1320 acactccctc aaagcggcat cctgttacag taacacctac gttagccaca aaaggcttta 1380 gggcaacaca aagagatccc atgaagctgc ttattataaa atcaggcaag cttagaattg 1440 taaatcagat gatgcttgat atttttcttg atcatgacta cctgtgatta cgctgtttgc 1500 gtgggtggtc cttgtggccc tagtgtcgat tgctcgagca attcaaagtg cgttcttctg 1560 aaagactgta acaaggatat tcatggacac aagaagctgc ttaacatatc agacaagtct 1620 cttcaaactg agtttgaact tcttcttgct agagctggta agtgaatcat gatttaacga 1680 ccggagtatt tgtcaagcgc gcgcttaggt gactcttgaa acgcaaatgt aatcaagccc 1740 tattttgggt ttggtatgcg tcataaatgt gttctcgact ttctgatgag ttacttgagc 1800 aaactgtgta ccaaaacaag cgctgcaaat aagatctctg tgataatcga gagtaaagga 1860 gctatgctaa ccgaatatta tttctactac tcgtgctagg cctattcgag aatggagttt 1920 tatatgacag cttgacgatt tgccctcgtc accgagacct ccacgggata cggttccgcc 1980 tcaacaaaac gtattgcgtt gtgcctgcaa catgggccga tcacaggagc gccaatcctt 2040 tgggtgataa ggggattaca tttctccagt caaaggcact gcaagcgaaa gtccaccagc 2100 ttatcccagt tggttcgcgt aagtagctac cattatcatc atgttcagat acccagcgca 2160 cattgcggtc gcacccattg cggcgcggga tctaccagca ttacatgcct tactcgcccc 2220 atttttcgcg cggccaaatc gctcactttc ctttccctcc ataaacgaaa atgaaaccta 2280 ccaaaaatat aataatggga cttttatgca tttatttgaa atgttcctat ggtttgtata 2340 ataaataaca tatgcagaaa ttcgttactt gaaagtgttt accttgggtg ccgtccacac 2400 tgtatattgt aaggtagttc agatactcat aatcacagac aatataatat tctcagaatg 2460 tatgttttgc tatattagcg atttgtagga gatgccgaga tcgccttaaa caagatgcac 2520 caccatctag atccttctcc acaactaccg ctgtccccat acgcagctcc gaacaaggct 2580 cagaactcct ggaggaagtc acatgtaatc aatcgtctgc aaacatctca gaagatgaag 2640 aggtacaaca tctgcaaata attattatat cgtatccata caggtgcggc ggagtggtgt 2700 tccaaaagtg tgtgggggga gggggggggg ggtaaagctt gaattatgat aaatatttag 2760 gtacatgtaa aaacggcagg ttcatgtaaa aagaaacgca tttgctcaga aaagtgagcg 2820 ccccccctgc cccttcctgt ccgccgcccc tgccatatct tgataagctt gcaaagttgc 2880 tgacctaagt tttttttaga tacaagaaac aagcgatgag tctatagtgg aaaagttcaa 2940 cgagcttagc cttgctggag gagacgcgag cttctttccg tcggacacca ctagcaccgc 3000 ctcgtccgat gaggtaaagc tctcgacctt gacagtcagg cgcggtaagc tgaacgactt 3060 tctacatgca tgcggaaaag aggagaacat cggccccgtc aagaaatcat gggaatcgat 3120 ggcgataaaa gcccaccgga ggcacgcttc tcgtgcttca aatgctatcg tttcagtact 3180 ggaggttatg gtaccagatg acccggcagg cttatggcaa gaggtacaga cctctaaaaa 3240 agtagaaaaa gccttgggcc tttcttcttc tttcgcagat gccttgtacc tcagagcgct 3300 agccgagact tacgagaatg cgacgacttg ggcaacgaaa tggcaagctc tggcagtcat 3360 ggtagatctg gtgtccttga aggaactacg ccactatctt ccaaatctat ctgaataccg 3420 ctacaaggcc gccaagatcc atctcctgag atttggtaga ggagcaccag tgccggtaga 3480 cagaaggcca cggatgcgaa tagacgagga gcggctggat tttttgctat ccttcatcac 3540 cagtccccat atcatccagg acttgccatt tgggcaaaaa tatatccggc tatcaaacgg 3600 tgatcttctc gagacaccca acgtcataag atccatgatt cccgccagga ttcacatgca 3660 gtatacacag tactgcaagg agaacgctca gagatctctg agcgagacaa cagtcagacg 3720 catcctcaaa gtttgttcag ccacagtccg aaaatctctc caaggtcttg actacatctc 3780 agcggaggat ggcaaatcgt ttgacgacct aattgaggtg gtgcgcaagt tagagggagt 3840 tggaggatgc gaccactcgt gggtatccac gtgtgagggg ggactcaaac agggaaagca 3900 atacctcaaa tcagattaca aggtaagtat atatagcgct tgacaacctt acgacgcagc 3960 atttatttac gaaaaaaaac gagtgaaaaa aggatccatt tagtaaatta atagttgatc 4020 caacaataaa aggtattaca agataatgag ctctttatta tttttttcaa gcgttgccac 4080 ctaaatgcta tcttaaaata taaattatgt gttctttttc aggtgcacgt tgctgacgct 4140 tgtaatgtgg cagaccactg cacagcatac gcacttagtg acccgaagga gcccatgtac 4200 gccaccccac cctgtgaaca tcaacacgac gtcttctgct cctcgtgttc tgagctggat 4260 gttacgctga cggcgatcga ggccgccttg aaagcctcgt caggcaaggt gcctgcggag 4320 caacacgacg aactactgtt cacataccga acgtgcatcg ccgctatcca tgcgtggaaa 4380 tctcaccaac tgcgctctat ccaacaggac aagccccgtc tttctataat gagtggcatc 4440 accgaatctg aagttcttat cttccaggac tgggccatga aatatctccc tcaaaagtac 4500 cgagaaactc aagctgactg gttcggtaag agagggattt catggcatat cagtgttgtg 4560 attagacggt cctccacagg tatagcggaa caccagatat ttgttcatat cgttgaaaac 4620 tgtagccaag acgccatgac tgtcatcagc atcatggagc acaccctacg tgagattaag 4680 gctagcactc ctggcgtctc tactgccttt tacaggcagg ataacgccgg atgttaccac 4740 aacgcggcca tgattacagc atgtcgattc atggagtcac gtacgggaat aaaggtaatt 4800 gtctattcga tatcatgatt tcctttatag ttctttttca tataacaaat gtcttgcata 4860 ttgccttaat cctgtcctaa aagctgtcga ccaatgagaa tgtgaaatat atccaagcaa 4920 acgctttgtc aaattaatga taattttttt cattttcctt aaaggtcgag agagtagatt 4980 ttagcgaccc acagggtggc aaaggcccat gtgatcgaaa agctgccacc attaaggccc 5040 acgtccggcg ttatattgct gaaggccatg atgtcaccac cgcagctgac ctgcgtcatg 5100 cgattctctc acacaatggc gtcccgggtg tgcgcgtcgc attggtagat gcgagtagtc 5160 tgaggcctct gagcagcgaa gccaagattg atggcatcac taaactaaac aacttcagtc 5220 ttagtgacaa gggcctaacg atgtggaggg cctatgacat cggtataggg agaacagttc 5280 cctggcaaag attacaaggt aacatttttt tccgtagaca ttgactaaac agaaccattg 5340 aagcccgcaa ataataaact tccgtttaca tagagatgca tgacaattta gtagtaaatc 5400 aaaaagttat atgcgcaacg cataagtgta tcaattgaaa tactgttttt ttttcttcta 5460 aatataaata tttccttagt tccagcgacc gtagagttgg tgagctttga aagtgctttc 5520 agtccgggtg gtttcatcgc catcaaatca cgccgcatca agcccgttga gctgtctgtg 5580 gcaagtggct tgtcgagcgt tcaaacagat tgtcaatctg atgaggctga tgacgacgat 5640 gaatccgagg aagagataga ggaagaatcc cctaagctgt tctgctgccc agttgagggt 5700 tgcataaagg cgtaccaccg tcacagttct ttggaggacc acatccagtt cgggaagtgt 5760 cgtatcgttg aagaacggta cacactattc gatcgggcgg caatagctta ccgcgagaag 5820 cttttgcagg gagatgagct gcaaccaacc ctagaaccgg tcctgcaaga aaaggcgtcg 5880 aatgacttgt gtcttggatg ggctctgaaa acagctagaa aggcaacccg ctttagcgaa 5940 aagcagaagg ccttcctaga cgaggtattt cagaagggga ttgataccgg tcacaagctt 6000 gaccctgcaa ctgctgccct agagatgcgc tacgccaagg acctgactgg gaaacgtcgc 6060 tttcaagttg atgaattctt gtcagacagt caggtccagt cgtacttttc aaggatggcc 6120 tccaagcgaa gaaaggcact tgattcgact cagtccgagg gcgacagcag agatgaagac 6180 gccaaagccg cagatgaaca ggcaagctac gcctcggcgc gcgccctcat cctagaggag 6240 tgtcaactcc aacatcctat cgaatatgag tctatcaatt tatgccaact ttacgaaaaa 6300 ggcaaactga gcaccctaaa cttggtttta ttaagacaag tttcagactt cctcgatttg 6360 gatattgacc ccaagctccg taggaaggct cccattattg ataaaatttc tgcagtaatc 6420 aagcagtgct catgcgcaca caactaatat gcaaataaac gtaaatacgt atacaatttt 6480 tacccttacg cctaagttct tcaccaaacc atcagatgtt tttgaaaata gccaaacaaa 6540 acatgatatc gactttttat caaatatgat gttctaataa agaaagacta agacccaaca 6600 ctgtctgttc ttatgtagat taggatacct gtggaaagtc acgcattctc atctagcaga 6660 ccgctgatca gttgttgtca tctgaaacca gactcgtgtt caagtacttg acctttgcat 6720 tgaaattaat cttacaaata ggccttttcc ccagaaacct cttggcagaa ggtaagaact 6780 gacgtgcttg aatatctttt acttcaatgg agcgtaaaga aactttaaaa cccaaacaaa 6840 tccttcaaag tttgccattc cggcaggcgt tcttaactga aatctgtaca aaatagcaaa 6900 tatttttcat tgtaatgtct ttattgactt ccagtaactt ccaaggatga accaagacaa 6960 ttatacagca tctgagatta gtatacagca agggtagagt ttattttctg tgatttgtct 7020 cctgtacaaa caggtatgtg tatctaataa agacggctgt caagaaaatc gcgtgttatt 7080 tgagctcgac atggggttgc gttcggcttc attataattc gggaatttga ttcccccaat 7140 tttttatttg ctgaatcgaa agaaataaca ccaatctttg ctcaaagtgc aaaatttctg 7200 cgaaaatcca tgtaccatcg gttttataag cccctaattt agactattat tcaagtcgac 7260 attttttatt gacatgttta gacagcaata aaatatactt ttttttgccg gaaaaagtaa 7320 agaaaccact cgatttatac cttatcaact cctttctaag gatctgtatc gctattttta 7380 attccgcgta tatttaaaga atattttgcg attttttacg caaggtgaaa aatgccccca 7440 aatcggcgat tttataggca aaatcgtaaa ttcggaattt ctcgaaaaat atttattgta 7500 tgtaactcaa actttttaac catgataaga gaaccagggg ctaactttaa accaattttg 7560 agcgattttg aaatttctta tttggaactc ctcagttgaa tctaagggac tggtgcac 7618 // ID Gypsy-60-I_NV repbase; DNA; NEM; 1382 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-60_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60-I_NV; KW Gypsy-60-LTR_NV; Gypsy-60_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1382 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1382 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-60_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 557-557 (2007). XX DR [2] (Consensus) XX SQ Sequence 1382 BP; 424 A; 277 C; 313 G; 368 T; 0 other; ttttggggaa acggatgtgc tgaagcataa aattgacatt ggtggggcag aacctgttaa 60 ctgtaggagc tatcgccatt cccctagaga gcgtcaaatt atagaagatg aggtgaaaag 120 gcttagggag gcgttcccaa tagttttggc taagaggaaa gacgggtcgc cacgtctgtg 180 agtggacttt cgtaaactga acaatttgac aattaaatgt gcccaacccc tcccagtgtt 240 taaggaagta ctccagtctc ttgaaggtgt taagtatttt tctactctag atttgagaag 300 tggtttctat cagattccct tgaacgagaa tgaccatgag aagacggcat tcaccactgg 360 tcaacgcctg atgcagttta ccgtcctccc tatgtgatca tgcaatagcc cagcctcgtt 420 tcagcgtatg atgactcttt cgctagctcc aatggtaggt gttgaatgtt acgcctatat 480 cgacggtatt atcacctggg gttccaccct tgaggaagca ttagagcgac taagtaagat 540 tttcacccag tttaagatgc ataatttgaa gattaacctt aagaaatgtg agttctttag 600 gaaagaggtg aaatggttgg gtcaccatat ttcacagcaa gttatcagac catcagaaga 660 taaaatgctg gcaattcatg attatcctaa gccccaatca acaaaagatc tgagagccta 720 cctaggccta atcaactgtt atcgctgatt cccacccaac ttagcagagg tatcacaacc 780 attttgggaa attgtaaatt caggagatgc taagttcaaa tggcgagaca ttcatgatga 840 agccttttcg cagaccaaga atctgcttac cagtccccct ttgcttgcat tgccagattt 900 caagcgccca tttgttgttg acttcagttg ttcttatctc aggttgatga caagggaaat 960 gaacgagttg tagagtatgc aagtagagct ttaactaagg cagagccgaa gtacggaatc 1020 acggatagag aagccttggc tatggttttt gcttcatgtg agtttaggcc atatatttat 1080 ggacagcatg tcacatttcg cgtagatcat aaccccctgg ctcaacttaa gaaaatgcca 1140 gacccaactc atcgcagagc tagatggctg gacaaattag aaactcttga ttatgagata 1200 tcatacagaa cagggaaaca tcatttaaat gcaaatgcat tatcaacagc atttaatcag 1260 aaggatgttt cagccataga gttggatgat gaaataaaca taagacagcg gcaagagaaa 1320 gaccccaacc tgagggaaat catcgaaaga acattgtcga gtaagcgttt aaccaaaggg 1380 ga 1382 // ID Gypsy-15-I_NV repbase; DNA; NEM; 9764 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-15_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15-I_NV; KW Gypsy-15-LTR_NV; Gypsy-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-9764 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-9764 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-15_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 459-459 (2007). XX DR [2] (Consensus) XX SQ Sequence 9764 BP; 2768 A; 2560 C; 2008 G; 2428 T; 0 other; ttggtggaga accctcgatt ctgcaaaaga aaaacaagta agtcagtggg tgacgggacc 60 agtggggagc ctaaccccat tctttccccc atcctgaatt ggcactattt ataggcagca 120 cacgtctttg ggaatgatct cagtgactag cagttgtgtt gtttgctatt actatgtagt 180 tgtaactgaa ttctagctat tcatacctat tgtatgttat tttctcgtat gtgcgaaatt 240 gtgtcatgtt cttcccacaa tcgtaactta cgtagctttt tctcatctgt ttcaaatgtt 300 tgtagtcact cgcgattaac ttggtgacct tactgtccat tacgatttgt ttttcgtttt 360 gcttatccta tacgtagcga tacgctactt attccatagt caccgtgtcg gccaaagtta 420 aaaaaacctc cgcgctcgtc ggtcccaccc tctagcattc agactcgatc acagaccatg 480 gcggcaagga atcctgaatc gcccgaatct acacccaggc gtattgagac tatagaaaca 540 cctaggaccc cacaccaaca ggctcctgat gtctcacccg aagtgttacg aagcttgatt 600 tcctcttttg accatctgag aaatgctgta gaatacaagc atttacaaca acaaaatagt 660 ttagcggctt tagaaacaac agtagaggaa agcggcgacc ttttgggact ccgcgcagga 720 atgaagcccc ctacctttag cggggatggc atagaagatg taaatgattt catcacccgt 780 tttcaacgga tgactgaatt ctatcgctgg gacgatgaaa gaaagttacg ggcccttccc 840 ctttacctta cgggaaacgc cagcgtttgg ttcaacagcc accctagggc agcgttgaac 900 acctgggacg cagctctcac acaattaaaa aatcactttg attctggggc aagccagtgg 960 ctcttgcgcc agcaattgga ccaaagagtc caaggaaagt ttgaacccct tgcccagtac 1020 accgctgaca tccgccgttt atgtcagcgg ctcaaattgc caaaaagcga gtggttgcac 1080 caatttgtgc gcggcctgcg gggaccactc aaagagtacg tggtactcca atccccggcg 1140 gattttgaga cggctgaaac acaggctcgc ctgcgcgatg ctgtgtccgg ccctccaacc 1200 gatttggcta ctgtttcgga tgagcttact aaacgggtta tcaacggtgt aaccggggct 1260 ttagctaaga caatcccctc atctaaccct tctaagattg ctgcttacga acccaccccc 1320 gaccccagcc gcccgcccca tcggcctgga gccgataacc ttaccaggga tgacattaga 1380 caaatcattc agcaggaatt acgcaaagag ctccgcagat cgaatccccc aaaccaaaat 1440 tacgatcgta atcgtcgtac ttatacaggg atccccatat gtagccagtg taacactaga 1500 ggccatacgg cttattcatg tcgcgcccgg gattcccgta ttcccaaccc gcgcaaccag 1560 aaccccaatt atcgcccctc cttccagagg ccacaatggc aaaataatgg gcctcccaga 1620 cgtctcaacc agggaaactg atagcggctc ctggttatcg ggaactacta ggggccctgg 1680 attttaatga caatcacaac tacacaaacg acaatcaaag cgcgcttaca attaacgaag 1740 agaactttca acaacacaca ctaccagcca atgacgccac ctttgacgcc aacatggacg 1800 acttacattt ttacacacca actaatgaac attttcagct ggacgaatca gtcttcccga 1860 acaatgattc gcccgacacc agagaccaga ccgtggagag ttttgaaatt aataataacg 1920 atttttcttc acaagagaat gcacaaagca atccaaattt ggataataat gatcggttca 1980 gaccagtacg tcgcacaatt ttttctgatg aggttataca ggtcgaagaa agaccgcctc 2040 gtaaatgttt tccacccaca gaggtgatgt ttaattttga agagggaaca actccccaag 2100 tattggctga aggccacagt atatgcgacg aaacgtttaa cgacaatcat caatcaatcc 2160 tagatatgga ttttggaatg gataacagca ttctacagca gccaatgagt cccagtccag 2220 atgagactga tgacaattta ccagaaatca atacgattat taatacttca aattcccatt 2280 tcggcaacca aaataatggc acggatgtta cggtcaatgt tccatttctt acaacggaca 2340 atttaatgct tcacggtcaa atctctggtc acaacgtcga ccttttggta gatactggcg 2400 ccgcgataag ctgcatcagc tcgtctacct ggcgacggct aaacacaaca aacaatttac 2460 aactgcgcga ccccagttca gcagcgctac agactgtagg cggtcacagc ttaacaatac 2520 taggcatatt tacagcagat ttatcactcg gcaacagggt atttacctta gatttattgg 2580 taatcaagaa cctcacttat gatgctattt tgggaaagga tttcttaatg cagcacaacg 2640 cgcagataga cttagcgtca cgctccttga acctaagacc accttttcaa tgcccattta 2700 atgaattccc ttcattagat tcacgaatta cggaaccaca gactgttcac gcacgccaga 2760 cctttaccat tccgccatta tcggaatcca ttatgcctgt tcgcattgct cattgcgagt 2820 tcacagcagg acaacccttg cttattacac catcgcacag tctgcaaacc agatataaca 2880 tcataggtgc acacgtgctg tccactgcca acaccaaggg tattacacat atcaaactac 2940 tcaatccagg ctcgcaacca gtcaccatac gcgaacacac gaatctagaa acgattgaac 3000 ccgtaacaga cgtggtagca tcactcccca cacactccac ttcatacact aacccgccta 3060 caactactcc agacatacca cttgaggagg cacgtaaact cgaggagtta agtaatgccg 3120 ctgatctcac aaccagtcag aaggctctgt tacaggacct actgatacaa tatcatgacg 3180 catttgcatt tacacctgag caactaggct acaccgacat agtgcaacac acaatcaata 3240 caggcaatgc ccggcctatt cggcaaccac cataccgcac ttccccagca aatcgcgcag 3300 aaatttcaag gcagaccgaa caaatgctcg agcaaggtat tattagcccc agcgtctcac 3360 cttgggcagc accggtggta ctcgctctga agaaggacaa tactatgcgg ttttgcgtgg 3420 attatcgcaa actaaacgcg gtaacggttc gcgacaacta tcctttaccg ttaattaccg 3480 atgttcttga ctcattttca catgcgaaac acctgacaac tttagatctc cgcaacggct 3540 attggcaaat cgcggtagca ccagaatctc gcgagaagac agcgttcata actcacgagg 3600 gtacttatga gtttaatgta ctgccattcg gtctcgtcgg gtccccatct tgcttctccc 3660 gccttatgag ccacgtcctg agaggactca attggaaaag ttgcctagta tatctcgacg 3720 atattatcgt cttctcaacc acgtttgaag aacatcttaa ggatttagaa gaggtcttcc 3780 aacggctaag aaacgccaat atcaagctaa accctaagaa atgcacgttt gcgaagagcg 3840 aagttgagta tctgggccat attgtgtcga ctgcgggaat taaacctaat ccagcaaaga 3900 tcaaggctgt acaggaatac cctcgaccca agaacgtccg tgatgttaga agtttcctag 3960 gattggcgaa ctattacagg cgttttgtaa aggattttgc taagattgca cgcccactca 4020 cccgtctaac aaggaaagac gttcgtttca aatggtcaca agatgcccag gctgctttcg 4080 atctcctcaa acgcgctcta gtttccgcgc ccatattagc ttacccagat ttcaatctga 4140 cctttcagct ctacactgat gctagtgctg aaggtatcgg cctgacgtta ggtcaaattc 4200 aaaacggccg cgaggtagta ataagttatg caggaagaga tttgtcacca agcgaacgca 4260 atttttcagc aagcgagcgt gaagcattag cattagtcac aggtatccga tactttagct 4320 gctaccttca caacaaacgt ttcgaggtct atacagatca tgcagcgctc aagtacttga 4380 tgaatatcaa gcacgatccc accggaagac tagcacgttg gtctctactg gttcaacagt 4440 acgacttcga gatcaagtac agaccgggca agagtaacgg caatgcagac gcactgtcaa 4500 gacgaccata cggtacatgc acgctcggag cggtagacac gccaggactc cagaccgatg 4560 acattaggga caagcaaaga cgcgacgtcc agttgtttcc tatgatcgat tatctcgaga 4620 acgaggtgtt accagaagac gatagacaag cgcgaaggat tctactgaca gcgcacacgt 4680 tctacttgtc ggaagatggc gccctgtacc acattgacca gcataacctt aagacacaga 4740 aaggtagcta ctctcagctc gttatcccag aatcacttcg ctacgaggtt ttggttaaca 4800 ttcatgacga tgtaacagga ggacacctcg gggtgcacaa aacctatgac aagcttaaag 4860 cacgctactt ttggagaggc atgttccaag atacagaaca ctggatcaag tcctgcgtgg 4920 attgcaacat gcgcaagacg cctaggaatc gccacaaagc gccccttatc cccatccctg 4980 ttgatggacc attcgaccgc attgcgatag acgcaatggg accgttccca gtaagcgacg 5040 atggcaacag gtacatttta gtaattagtg actatctcac gaagtggccc gaagcttttg 5100 cagtacctaa catcactgcc ccagtagtcg cgcgaattct tgtagacgag ataattgcta 5160 gacattcctg tccgaatcag cttttgagcg atagagggaa aaattttctc tcggagctag 5220 ttcaggaagt ctgcaagatt ttcagtatac gcaaagttca aactacagct tatcacccac 5280 aatgcgacgg tttagtggaa cgctccaatt cttcactaat tcagtctttg tcaatgtacc 5340 tagatgtcaa gcaaaaagac tgggacattt tcataccttc agtgttgttc gcacatcgca 5400 cttccatttc agacagcacg ggggattcgc cattttattt actatatggt agaagcccta 5460 gactaccaat tgacgtaagt ctgctaccgc gcaaagaagt ttctacttcc attgcagaac 5520 atcgtgcacg catcgtgcaa ggcgtggaac taagtcaaag aatcgcgcat tcacttattc 5580 agaaagcaca acagaaaatg aaagcacaat acgacaggac tagtaaacca gcgacattta 5640 cagtaggtca acgtgtttgg gtctacacac ctaaaaccaa gaaaggccta tctcgtaaat 5700 tgcaaaacaa atggtggggt ccctatcgta taactcaacg cttaagcgat gtacattttc 5760 gtctacgtac caccactaat cgacctgtat ctgttactgt acacgctaac agaatgaaac 5820 cctactatga ccctgcagat agacccaccc ttccaccccc agtcattcca gaggacactt 5880 tacctctcca cccggatgac cttccattag aggacgagat tccctcagag ggtagcgctg 5940 acgaagccga cccaaacccc actaatgggc cgatagctag ccccagcaac acccctgatc 6000 caccccctat tgataatgta gaggtattca gtgcggaaaa gctacttaaa aagcgcgcta 6060 aaaatggtcg ggttgaatat ttagtactgt gggcggattc acaggataag acatgggaac 6120 cccaggaaaa catttttgat catcgtctca tcgaagaatt tgatcgaact cattcttctt 6180 cccacagaga caccgaccag aacagttaat gccatcatga gtatgggaac ctgggttacc 6240 ctgctcctac tctttaacct tgtacacact aacgaacgcc ccttggataa ctctggcaaa 6300 ccactaacat tttacccaag ttcattaatg ctgggacatc atgttagacc cttggtcttt 6360 tataacgata ctcgcctgat ccatctctcc accacaatgt acgacgttac cccttacgaa 6420 ccttccctca tggaaaatac ttgccataat ttccaaacag atttttttaa cggcatcttt 6480 aaaaacattc gatcaatcca gcaaacagca tgtcgcctct taagctctgc cggatactcc 6540 aatttgattg agtgcaattc atttttatca cgcctttata aatacgatac tggattggac 6600 tcctccatgg tttgtccgag agttttccta aaaaacatcg ctgaatgcaa acgatgggtg 6660 aaagcgaatt gtaacagcct tagtgctaat gaaaaaaggt actatggtgt atcacgacga 6720 cgcaagcgcg agagttttct ttgccatgcc ggtttctttg gtctttttcg atccctacac 6780 aaagcctttg gtggcaaatg cgatggtaat cggatagaaa atcgaaagag taccctgacc 6840 gatataagta aggctcttag gctttcacaa tctaccacaa gggcggtaaa cggcaaggtt 6900 gtttacttga taaaaacggt ggacagtatg gctacgaagt taaatcgagt gaccgaggac 6960 atgaaaattg tcaaggatac atttgtccga tggcggctaa cctttcggga gtttgctaaa 7020 aaggacaatt gcaacaaaaa catgcaaatg gagtttttat caaagtacgc catggaaatt 7080 aacactgcat ttgccacaat cctgcgcttg tcggaaattc gtgatacagt cgcacaattt 7140 tctaggataa ccagtaaaac acttgtggga tacgattcac ttccgcccta tatcaatcgt 7200 caagtggcgg acagattgga aacggatccc tcccttatag ttacaaaaca attgttagat 7260 gaaggcgttc cacttcttat ggaacctatg gtggatttta cgctttcgga cgaaggcaaa 7320 aagctctctg tatcccaaag taagctagaa gccactatgc ttttcacact accaattgtt 7380 acttcggtac aacacatgtg taccttaccc ccttaaaatt taacgtatcc aacacttgtt 7440 tcaccggccc agttcttcag cgtaatctac tactaatcac atgtaaaaac aatcaaatgc 7500 tggtcactga tgccattcta tcaaagtgta tgacaaacaa tgagtttgtt ctgtgcccca 7560 ctaaccttct taatgtcgtt caaaatccat actggttggg gttcccttgg tctccatact 7620 ctcacatggc ttatccacga caccacataa catcaaagaa ctgtgacggc ctgaaggaaa 7680 ttcaccacat cggcggacgt tacttcttgt ctgcaacctc cgggacgttg accacaaaca 7740 atggtcccat gcgtgtgaca cctctggcgg tatttcattt accctgcaac gtatccttcg 7800 agagcgctac gtccggtatc ggcgaatgcc cacagcgtat ggaaatcgaa ttaccgattt 7860 ttggagagac acatctccaa tatgcctctt ggaagtcggt aatggacgat aaacaattag 7920 atcttcactt ccgtacgctt atcattccgc cggtcaccgt catgaaccac tccattcttc 7980 gtgggctaga cgagacgtac cgagtgctcg atcgacaatt cacggcacag attgacaaac 8040 tccacggcga catcgatgcc atcagcgagg ttgaggtcaa cacaatcaac gagatcctac 8100 tatacacttc agtagctgtc tcactgttga acttcgtcct tcttgtggca tacgcttgtt 8160 atcatcatgg tgttttcgag cgcctcaagc atcagcgccg cacgcccccc aaacgctctt 8220 tacctccaca cgaacctcac tttgagttgg taccgccact caagaaacca cgctgcgagt 8280 cggaagaaga cgacgaagag gagcacgacc tcgagcgacc gtccgtcgtt gacgacacag 8340 agctagtaca ccccacggaa cctctcagag caccttacgc ttaaccagcc tctgacccac 8400 cattcaagat gatccgaaaa cttcatcact gtcgtcgcca cacacaaatt cccccccctt 8460 cacaccacgc atttcacatt ttcattgcat atttcatact tctgtatcgg tctgcgttga 8520 cgtccgatag ccactgctat cgcgagattt gcacttgatt agctctctaa tcgtgcgtca 8580 cgtatatccc gcagaatgcc acgatcaaca aaaagacact tcgaacggcg acggcggtgg 8640 atggcaacga actgtgtttg ctgtacccgc acggcggaac aaacgatcaa aatgccgtgt 8700 tgcagtaagc atctgcacgc gacgtgcctc cgccgctcca ctgaagcgat tccatccatg 8760 ccgccgcgct gtccgtactg caggactacc ttcatcgcag tagatgatgc cgcagttcgg 8820 gaggaaaccg ccccggcgat ggtcgtgcgg tttccggcgt catgtccagc accacccctc 8880 gccgaccacc actaccgcca attacgagtc tctccaccaa ggctacccat agactgccaa 8940 gtctgcgaga tgcgccgtcg aagggacttc gaggaatggg aggcgttcgg cgagcgccat 9000 gaccaggtcg aggaacggat aagaactgcg aatccgcctc tttccctctt cgaaaggctc 9060 tcgctacgat ttccggggtt gtacccgtcg ccggaggaca tcgccctcct cccggaggcg 9120 agaccgacat ccgacgaaga gttggatcgg ttgaactttc cggatgaccc ggtgaggcct 9180 ccgcggccaa tctcaccgga tccgattgac tttccccgac cccgtacacc tccacttgga 9240 tggactgagt tcatgcggcg agatcgcatg aattccgact aggaaaagga cactctctcg 9300 ctctgttatt tacggcctcc aattcaacta agccaaaaag gactactttc tatttactta 9360 ttactttctg ttgctcggat acgagattcg taagcgacaa tattcgttta cctttcaact 9420 tggtaaatat ttcatgttat aaaaagtgtt ttcaatcaca ctgtaaaatt cattcttagt 9480 tttttttttt caacagaaag tcattttcta gttctctttg gtgaatttgg agttatttag 9540 cttgccgtag cagtcaaaag cactcacgct ttattataat catattcaaa ttaggatata 9600 tttactcagg gatttcaaaa aaacaaaaca aacaaaaaaa attatataag cattgatttt 9660 caaattaccc tttatcgaac atcctctcta gtttagcatg aatcatttac attatatata 9720 tcaaagtttc aagcggggac gcttgtcttc aaagggggag gcca 9764 // ID LTR-1_NV repbase; DNA; NEM; 1064 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE A family of solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1064 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1064 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1064 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC It shows 4-bp TSDs and forms highly variable structures. Contains CC 145-bp TIRs. So it may be also a DNA transposon. XX SQ Sequence 1064 BP; 317 A; 200 C; 233 G; 313 T; 1 other; tgtacaggac ccgaaatgat cccaggaccc gaaacgatcc caggacccga aatgatcccc 60 aaaagtaccc caactgatcc cgggacccga aacgatcccc aagagtcccc gaaatgaacc 120 ccaaggaatt acagtaatgg acaaacaaaa ggaatgtgga aggattggct ttcagtttta 180 aaaacatatg aaacatttta gcgttatttt tgttactatc aggaaattta aattaactaa 240 aaccatagta ttaagatttt tatatacgac tgcgcgggaa atacagcttt cgacagcttg 300 gttgagtcag aaattggggt caaataacaa ttcccgtgat agtaatttga agaaccaggc 360 gtgaataaat catttataca taacaagcca taaaagaaag tctccacaga taagacatgc 420 ctctgctttc ccgtaggaag ccaaatgttt gtttgtgttc ggtgaatgaa agacctatca 480 taaagagaga tagagagaaa tcatgcagkg gtgtacgcac gactacatga ggaaattcaa 540 aactcacata atattgcttt caacaaaagc cacatctctt aatattttgc aacggtagta 600 aaagggttgt tcgagtgcat tactcagtgt gcttttgtca ttccatcttc tcggccaaac 660 cggctgccta aattgtgtcg gtaaatattc gctcgtgtga acatggattt cgtggtgaaa 720 tacacgtttg gttgtcaaat gaatatagat ttttaggggt gatgtttaca ggaaacgaga 780 tttatattgt cagagtaacc gccggggcaa tgttataaat agaagtattg tatttgaatt 840 taagtcatgc tatttataaa tattttcgct gtcaaccctt aattatgttt taattggaag 900 tgctttcttc tgctttccct ttgtccatta ctgcaattcc ttggggttga tttcggggac 960 tcctggggat cgtttcgggt cccgggatca gttggggaac ttttggggat catttcgggt 1020 cctgggatcg tttcgggtcc tgggatcatt tcgggtcctg taca 1064 // ID TE-10_NV repbase; DNA; NEM; 335 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-10_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP18; TE-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-335 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-335 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-335 RA Kapitonov V. and Jurka J.; RT "A family of TE-10_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 82-93% identical to the consensus. It was reported CC originally as the unclassified NVREP18 transposable element CC [1,2]. It contains the 188-bp palindrome at its 3' end. XX SQ Sequence 335 BP; 94 A; 76 C; 71 G; 94 T; 0 other; ttatacaacg acactcgtaa atcgcgcgct ctgattggtc aagggtccat gtgttattag 60 aggacacacg cacgcttggc gtcagcatgc gcgcgctccc caaaactaga ttgtaacgta 120 agaaaacatt ttaattgttg tataaaacaa atagatctca ttttttgtgc gtctgtcctc 180 taatagatgc acagaagacg tcacagcgtg tcatgaacaa cagtcacgca actcgactgc 240 gtctcgttgc gtactttttt gttcatgaca cgctgtgacg tcatctgtgc atctattaga 300 ggacagacgc acgcaaaaat gagatctatt tgtta 335 // ID Penelope-6_NV repbase; DNA; NEM; 1205 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-6_NV autonomous Non-LTR DE Retrotransposon - incomplete consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-6_NV. XX NM Penelope-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1205 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1205 RA Kapitonov V.V. and Jurka J.; RT "Penelope-6_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 636-636 (2007). XX DR [2] (Consensus) XX CC It is only a 3' terminal part of the retrotransposon. XX SQ Sequence 1205 BP; 282 A; 345 C; 207 G; 371 T; 0 other; aaatatctga gacctcggtc acctttctgg atatttcact ctccatcaag gatgatcacc 60 tagccacttc agtgtactac aagcccactg actctcacag ttatcttctg ttttcttcct 120 ctcatcccaa acatgttaaa actgctatcc cttattcgct gtttctcaga cttcgccgac 180 tttgcagcga tgactctgac tttcactctc aatctgagaa aatgtgtcaa ttctttagtg 240 accgtggtta tcctgctcat gttgtcacta acgctctcga tcgcgctcgt tccgttgatc 300 gctctgttgc attgcaaccc tccaagccta aaagtgagga tagaattccc tttcctctca 360 catttcatcc ctctaaccta gccattaagc acttagtctc taggaacttc aagattctac 420 aagaagaccc tgaaacggcc gctatctttc ctcagcctcc gctcttctct ttccgccgtg 480 acaagaatct acgttcctct cttgtcagaa gcaccttgac ccccgataat ctagagcccg 540 gcacttttaa gtgctctagg aagagatgta ccacttgtga ttacatcgtt cctaccaccc 600 gcattatcgg acccaatgga gagtcgtact ctgtcacgga ccatatcaca tgcaccacta 660 gcaatctcat ttattgtatt tcttgtaagc tttgcggtat gatttacatc ggagaaaccg 720 gtcgcatgct cggcacgcgt ttttgtgaac atcgcaacga tgtaatcaac cgtcgtacat 780 tcaaaccagt ttctaggcat tttaacctcc caggacactc tgtccaccac ttgtctattt 840 gtggagtttc tttacacaac ggttccaatg actctcgcat ccagaaagag aatagaatta 900 ttttctctct tggctgtaga gcccccctag gtataaacga aaaactgtcc tttgcataga 960 taattacgat ttctttagcg cgccccgctc taattgccta ttgttccttg ttcctttgtc 1020 agaccgcgcg cgcggcgccg gcttactgcc tattgttcgc acactatact ataaatacca 1080 ctcccccatc cgattcagtt tcttttgctc cgacgaaggg ctaacgctcg aaacgtcagc 1140 gcaactactc tgtttcacag aggcgtttaa catacctttt caaccttgtg ttgatttata 1200 ccttg 1205 // ID BEL-5-I_NV repbase; DNA; NEM; 5342 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone BEL-5_NV autonomous DE LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-5-I_NV; KW BEL-5-LTR_NV; BEL-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5342 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5342 RA Kapitonov V.V. and Jurka J.; RT "BEL-5_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 374-374 (2007). XX DR [2] (Consensus) XX SQ Sequence 5342 BP; 1387 A; 1324 C; 1482 G; 1149 T; 0 other; ttggtccacc gagccggatg agtatcccag cgatctcacc actacacgac tccttctcta 60 aagcgggaag cgaggtaagc attacaccca aaacaaatgc aagaaagaaa actgcaatcg 120 ccagattgaa agctcggcaa atagccgaaa gaattgaacg agagagagct caatcggagg 180 agcagcttac cagagaacta gaactggata agcaaagaaa acagctagaa cttctcaagt 240 tgagaaagca aaatgacgat gagttaattc aggctaagaa tgaaattgct ctagcggagc 300 tagaagcctt tgatctcgaa cccatgaccc caatacttgc atatgttgac agtctcccaa 360 cccaggggac tgtgggagcc taagctaatg tccaaaccat gttattagac cctgtattgc 420 cactttttga agagatgaaa acaaataata acatcccctc cagcaaggca ttgcccacct 480 cacatggccg cttgattagc cctttgacaa ccgtccaaga ccaaagtcca tccgctggta 540 catattaaaa caaccctcac agattccgat agaatagctt atttatacca gaatttggat 600 ggggaggcca agagggctgt tgagagtttg ggagtaacta tgctagtgaa ctcaaaatgt 660 taaaacaaca gtttggcaac aatcaccgag ttgaagcggc ccatctcaag agcatggttg 720 acgggccgga cgttgttcag ggtgatagac agtccctcag gtccttccac tacaaggtca 780 aggcctgcgt gcaatggtgt acaaaacagg gcctggctgc cattttgcag aatcctgagt 840 atctaggcag agctgctatg aagcttccgg acggcatgcg catgagatgg tacgaacatc 900 tgcaaggtga ctatgatggc ttgtccctcc tggactttga gagatggttg cagagaagag 960 ttgatgctat gtttaacccc tttgaagact atgtccatga gcgtgagtca agacccaggc 1020 tcccacgacc aaggcatttc agccagggtc ccccgcccag ggcacttcat cccaacagtg 1080 ttggcattcg cgtaacacgg tctacccaag agagcagttc tggggaggtg acggccccac 1140 cccaggtcga ttctcccggc caagataggt gcctcgtatg cgaagacagg caccgccttg 1200 tctactgcga ctcgttcaaa tccaagccct ttaaagagag aaggaagatc gtatacaaca 1260 agcggctgtg ccgcaactgc ctcaaggagg ggcactttgc ggattcctgt ccgagtagcg 1320 gacggtgtct caaggagggg tgtggcttga agcatcacac actccttcac agcgaaagag 1380 tagacgaatc gaagtctgaa gaaaaggacg gtgcggacca caaggttaat gccctacagc 1440 ttgtcccggt tctggcctgg ggaccaaagg gtcaagtgaa gactgtagcg gtcctcgatg 1500 caggaagtga ctccaccttg attcgcaagg acctggcaga gcagcttgaa ctcaaaggag 1560 agacgcacca gttgcagcta aacactgttg agtcagacac gcgctcctgt aacatgcagc 1620 gggtcggttt ccggttgtca tcagatgacc accccgagaa gattgatgtt gaaggggctt 1680 gggtagtgca caagctcaac atccctaagc acaaggtgtc cggtaaagag gccgcgaagc 1740 gatggaatca tcttgagggt gtcaacctgc agaccctcga agccggcgac gtcacgctct 1800 tgattggttc agatatggcc catcttcttg tacacttgga cgtacgacag ggccgacctg 1860 gcgagcctat tgcggtacag accccgctag ggtggacatt atttggcaga ctcggacgcg 1920 ctgttctacc aaacttgatg catgtccatt cgaacttgac gttgctcaaa tagggcgagt 1980 tgctaaacga acaagttcag aggttttggg aaaccgactc gtatggtgtg agtcgaactg 2040 aacgacctat cggcccctca gctgaggaca gacgcgcgtt ggagacgctg gatagtacgg 2100 tgaggaagat gggcggacac tacgagactg gtcttttatg gaaagaagaa gctgtagtgc 2160 ttcccagtaa caggagaatg gcgatgtaca ggctcaacag caccgagcag aaactgaaga 2220 aagacccaga gttagccagc atgtacagaa gtgttctaaa tgagtaccaa agcaaaggcc 2280 attgtcgaaa gctctcagag gtcgaagcag caatcgaagg tcccagaacg tggtacctcc 2340 ctcatcatgg tgttcaaaac cccagcaagc caggaaaact ccgcgtagtc ttcgatgcgg 2400 cggcaaagta caacaacgtg tcattgaatg actgtctcct gacgggccca gacctgctga 2460 acgatttagt aggtgtactt atccgatttc gttgcaacaa ggtcgggata atgggggata 2520 ttgaaaagat gttccaccag gtcaaggtcc gagaagcaga tcaagactcc ctccggttcc 2580 tgtggaggaa cctcgaagag agaatccctg atgtataccg tatggcagct catgtgtttg 2640 gagccattga ctcgccctgc tcggcctgct acgcactgcg gaagacagca gaagatcaag 2700 ctggtttgtt tcccgatgat gtgctggata ctataaagag gaacttctac atggacgacg 2760 tcctaacttc aaggccgtcg gaagacgagg cggcagctgt cgctaaccag ctcattgaag 2820 cagtagcggc tggtggtttt cgcttgacca agtgggtatc taacagccga aacgtgctcc 2880 gttcccttcc gtctgacgag gtatcctgtg acgtggtcaa cttggactta cagaccttgc 2940 ctcaagagag agcccttgga gtaaagtggt gtctcgagca agacacgctt tacttgaagc 3000 cgttgaaaga taggttcccc gacacaaaac gaggagtcct tagtgctacg agtagtgtgt 3060 ttgaccccct gggccttgcg gcaaggccaa gctcatcata caggaactgt ggcgctgtaa 3120 gattgattgg gatgagccta ttcccgaaga gctgcgaagc atctggaagt cgtggaaaga 3180 cgggctgaag acgccgctga tgatccaggt cccacggtgg tacggcttcc atctgcgaga 3240 cgcccaagac atccagcttc acgtattcag cttcgcgtca gaggtagcct atggtgccgt 3300 tacctacctg cgagcagcgg ttggtgacca agtagttgtg agctttgttc ttggaaagac 3360 aaggctagcc ccggtgagaa ctctcaccat tccacgactc gagctacaag cggcagtcgt 3420 cggagccagg ctgagaaaga aggtgatcaa cgagattgat ctccccatta acgctgtgca 3480 tctgtggagc gactccaaga ccaccctgca gtatattgtc aacaccacca ggagatttag 3540 cacctatgtc tcgaacagag tttcagagat actcggctct tgcaagccag atgaatggca 3600 tcacataccc ggtaagctca atccagcaga tgactgcaca cgaggtgtag ccttgcaaga 3660 cctgacccct gattcgcgtt ggcttgcggg acccgacttt cttgccaaac cgccttgcca 3720 gtggccaagt gcggacccag agccggtcga agaaagcgat ctcgaagtca aggccaccgt 3780 cctggcaact ggtgtcagtg ctccaccctt tgatgtgaag tggaagaggt attcgaccct 3840 cgggcgactg gtgcgggtat atgggtggtg tcttcgcttc aagtcgatac tcctgagtaa 3900 ggcaagaaag acggccgctc cactgaaagc tgacttgcag accctagttg ctgaagagat 3960 gaaggattca cgcttagagc tatgtcgtat tgctcagctg gaaatgttcc cggatgaata 4020 tgccgcgctt caaagcggca aacccattgc atcccacagc cgcattcttc cgcttcaacc 4080 agtcttaata gacagggtta ttcgggttgg cgggaggcta aaggatgcac cggtgtcttt 4140 cgaggagaag caccaaatcg tcttactatc ggggcacccc ctgagttctc tgattgtcca 4200 ggatttccat cagcgtaatc gccacgttgg cagagagcac acactggcgc tggtgagaca 4260 agaatactgg atacttcgcg ggaagggcct gacgagaaaa ttgatcaaag actgtttgct 4320 gtgcaaacga cggagagcca aacctaaggt cccgctaatg gcctccctgc cgggtagcag 4380 attggtgatg tgtgaacctg ctttcagtag taccggagtc gactactttg gtccgatgac 4440 tgtcaagagg ggacgagtca ccgagaagag atggggatgt ctctttactt gtatgactac 4500 gagagcggtg catgtcgagt tggctggcga tcttagtacc gatgccttca tactcgcctt 4560 gagaaggttt cgagcgagac gaggaaatcc ccgcctgatg caatctgata atggttcgaa 4620 ctttgtcggc gcgcagcggg aacttgctga agctctcgca cgaatagacc aagagagagt 4680 aacggatgag ttatcgaagg aaagtgtaac ctggagtttc aacccaccgg ccgccccgca 4740 tatgggtggt gtcttcgagt cgatggtgaa acaagtcaag agggctctta aggtggtgat 4800 tggcgatcgt gttctctacg aggatgtact tcacactgct ttggtcgaga cagaagcagt 4860 cttgaacagt cgcccgctta cgcccgtaag cgacgatcct gatgattttg aggccctcac 4920 gccaaaccac ttcttgatag gtagggcttc ccccaaccca ccacctgggg aatttcaaga 4980 gcgggaagtt aatagtcgca agcgttggcg gcagtcgcaa accattgcag acatggtttg 5040 gcaccgctgg cggaaggact acctgcctac attgacggtc aggaagaagt ggaacaagga 5100 agagacgaac ttgagagtgg gagaccttgt gattgtgaaa gacgaggact cgcctaggtc 5160 acactggtct atggcgcgcg ttactgccgt gttccctggg aaggacggtc gggtacgcac 5220 tgtgcagctc aagacaccca gcggcacgtt gatccgaccg gtcgcgaagg tgtgcttgct 5280 ggaagagagc gccgaatcct cctgagatgt cgtgagccgt gtcagctcac tgggggggag 5340 ta 5342 // ID hAT-N1_NV repbase; DNA; NEM; 778 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-N1_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW hAT-N1_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-778 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-778 RA Kapitonov V.V. and Jurka J.; RT "hAT-N1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 595-595 (2007). XX DR [2] (Consensus) XX SQ Sequence 778 BP; 229 A; 118 C; 135 G; 296 T; 0 other; taggcctttc cagattgtgc tcggcactat tttagcgcaa tttgggtttg ggagcactat 60 tttgatcaga gagcactttt tgggtaaaca agtcaacttc tagctttttt aacccaagtt 120 actaggtttt gttgtcttat atagacattt ctagtttcct taactacaaa taatattatc 180 tcaactaggc taagactgta agactggtga tttcgacatt ttaatgggta gcctgtgctt 240 tggtaaccac aaatattggg tagcctgtgg agttcattac aataatagaa tgccttatct 300 agaagatctg tttgccatgt tttcctgttt tacatctatt gtaattattt ctcgttagga 360 gattgttata attaaggtct gttatcaggt ttgacattat tgacattggt gatgtttgta 420 aatgaacatt gttttttagt agtatccaaa taacaaaggt aaacaaacac aaaagagaac 480 aaagtcattt ataatacagt tagttgttat acactaaagt gtgatttacc cgttcatgga 540 caacaatata agatactcta atgcatgtat ttaataaaag caatattctt tcttttattc 600 aaattttaat taaaacacaa cttatctcta aattgtttta aaaatatacg gtaattttct 660 tttcgccaat gagcactatt tgagcactat tttgattttg gagcactttt taagcacttt 720 ttgggtgttt ttgggagcac ttttctggct ttttgggagc actatctgga aacgccta 778 // ID RTEX-1_NV repbase; DNA; NEM; 5820 BP. XX AC . XX DT 31-MAR-2009 (Rel. 14.03, Created) DT 31-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone RTEX-1_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; CR1e-1_NV; KW RTEX-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5820 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5820 RA Kapitonov V.V. and Jurka J.; RT "RTEX non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 722-722 (2009). XX DR [2] (Consensus) XX CC This non-LTR retrotransposon belongs to the RTEX clade, a sister CC clade of RTEs. Contrary to RTEs, RTEX elements code for the ORF1 CC protein that contains the esterase domain, similar to ORF1 in CC some families of CR1 and L2. XX FH Key Location/Qualifiers FT CDS 277..1947 FT /product="RTEX-1_NV_1p" FT /translation="MSLLDYSGQTNQTTDCDIIEQESIVTEQETTDPVELS FT EPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMKGFIEKFDKKLSDLSMDMN FT EQLILIKDLECQQKNSRKELIMEMDRKLDETKQDKVLADLKGLQSSHSKLG FT NKIRETKLDLEKCEQRLTFIETKIEMDAEESSDDDSEDEESGEPSDSEQVE FT QVERQINTQTILRTTVASSSSIVNSPNTNDLPQLASSGNIESPINGNQQQI FT VDSSRTTRGETEPRPAQTATENTTRGNATLAETPGNILMLSDSIFGGIIQS FT RFARGRYVNKQYVQGGTIEMLDHLSTMGCEAGNKYEYVILHTGTNDIRELP FT TEQICSNIENIVEECIKLWPQSKIVVSGLTFHLRDHAKNDIIDVVNSASER FT LSSRCAKVYFADNRGVCLSRNGDIDESVYRDNVHLNNQTGTKKLVASLKSQ FT IPGLRRQRDPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAY FT CPPTNNPMFRPFPGNPQGYQQPTTNQLPTGRQQYPMNSQQQQLEQALKIIS FT ECVRLAYRNG" FT CDS 1981..5454 FT /product="RTEX-1_NV_2p" FT /translation="MPGSLTSRNWDFGRSLRIGTWNIHGHKSKELGNKTKL FT AEVVDIIQQHDIFGIVETHASQNTDLAVEKFKHFIKTRPKSGKKISGGIAL FT YISNKVAEGVAYLPSENRNIIWCKLKRNYFGTEKDIFLGTVYFSPQNYEQT FT NDEDYMSDLEEDIIKYLGQGDVILQGDFNARTSELTEHINFDEDRFLSLPD FT DYELDVPSPRYSEDHYTDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCY FT QYNGTSLVDYVISSNRVRQKFQFLKIHPLLPHISDHCHITYNIKIGNKITV FT TQSKSFAKHARIFCHGTNVKENVDSILRSDIYRSKLDNLVSHCDTNCPDTA FT SNITSSFTKLLVEISEKAGFKYGDKQKCQKTNAPWFDEECRSEKANLKRCG FT RKICNSPNDSELRRELFWKKKKFKKLCKRKKYQYRASGIKNLDFKDSKKLW FT RSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKTTTTNLSIPKCRDQTGP FT LDSEIRLEEVKLAIENLKNNKAPGHDNILNELLKYGKDTLLPYLTRLFNII FT FRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSKLFTSILNSRL FT YDYLVQKGYLKKEQGGFRKKHSTVDSIFILKTVIDRVVKSKPKKKNNMLFT FT CFIDFRKAFDSIPRDKLFAKIQQAGISGNFYEVLRSMYSNDISCGKIGDSI FT SESFRCMVGVKQGCMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY FT ADDLVLFSETSSGLQDLLNRLSIYSEENSLKVNTSKTKVMIFNNIGKVMNN FT YQFLLNREQLENVKSYKYLGLVFSAVGNFNLAKEELKKTALKALFKLRKDL FT GIHFRSDINLTLKLFDALIKPILLYGSEVWGADNKSCVDDRDPLESVHLKF FT CKMLLGTGKTAVNNACRGELGRYPLCINATYRNIKYWTNLRSKEEALSKVV FT YTECVNNPHVSYWTHKTKEIIFKAGFGFMWLYQNETDPTLFLDIFSKRLND FT MYFQKWHGEIFNDQRKNSNEMNKLRTYRTFKDKYELENYLVAIPNVKHRVA FT LTKLRISNHQLQIEKGRHTRPYTKEKDRICPTCKNDVENEFHFLVQCQTYK FT ELRNSVIQNLQRNQITQKRLFNLLINPPTQLAGIAARYISECFKLRETLI" XX SQ Sequence 5820 BP; 2199 A; 1070 C; 1114 G; 1437 T; 0 other; atggcgtcgg aagcggcttc agaacactct gaacttacta agttcctaag ttacctacca 60 tccaagaaac aattcaaatg gaattcgaat gcaaagtcac ttttggaatt ttgcattaaa 120 gaactgcagg atggagatca agacgctttg ataagtcatt cttcaaaaga aaactccgaa 180 gtttaccgat tcgaaaatat aacggtgaac ttttatccgt ctacgaagac cgtacaactg 240 cagggtattg gtaaagatta tctcatcaag aaactgatgt ctttacttga ttactctgga 300 cagacaaatc agacaactga ttgtgatatt atcgaacagg aatctattgt aactgagcaa 360 gaaacaacgg atccagtcga actctctgaa ccgtgtagtt caaaggtcgc cttaaaggac 420 agctcagatc aaaaaggtca tgatgaccga tatcaagaat ttctcgattt caaagaaatg 480 atgaaaggct tcattgaaaa gtttgacaag aaattatccg atcttagtat ggatatgaac 540 gagcaactaa ttctaatcaa agatctggaa tgccaacaga agaatagccg gaaagaatta 600 attatggaaa tggatcggaa gctagacgaa acaaagcaag ataaagtcct tgctgatctg 660 aaaggtttgc agagctcaca ttccaaactt ggaaataaaa ttcgcgagac taaattagac 720 ctcgaaaaat gtgagcagcg attgacattc atagaaacca aaatcgaaat ggacgctgaa 780 gaatccagcg acgatgactc agaggacgaa gagagcggcg agccatcgga ttctgaacaa 840 gtggaacagg tggaacgaca aattaataca caaacaatac tgcggacgac agtggctagc 900 agctctagta tcgtaaactc tccaaacacg aacgatttgc cgcagcttgc ttctagcggt 960 aatattgaat caccaatcaa tggaaatcaa caacaaatag tcgactcctc tcgcacaacc 1020 agaggcgaaa ctgaacctag accagcccag acagcaacag agaatacgac aagaggaaat 1080 gctacgctcg cagaaacccc cggaaatatt ctgatgctct ctgattctat ctttggagga 1140 attattcaaa gccggttcgc gagaggtaga tatgtaaaca aacaatatgt acaaggaggc 1200 acgattgaga tgctggacca cttgagcaca atgggatgcg aggctggcaa taagtacgaa 1260 tacgtcatat tgcatacagg aacaaacgac atacgtgaac ttcccacaga acaaatctgc 1320 tctaatatcg agaatatcgt ggaagagtgc attaaattat ggccccaaag caaaatagtt 1380 gtatctggct taacgtttca cttgagagat catgctaaaa atgacataat agacgtcgtt 1440 aacagtgcat ctgagcgatt gtcttctagg tgtgcaaagg tgtattttgc agacaataga 1500 ggtgtttgct tatcacgtaa tggagatatc gacgaaagtg tatacagaga taatgtacac 1560 ttaaataacc aaacgggaac gaaaaaacta gtcgcaagct taaaaagtca aattccaggg 1620 ctcagaagac aaagggatcc cgctgtaact cggaaattcc cagtcaacaa ccgtttccag 1680 caaagaagac aaggcgctcc tagcggatcc acaggtatcc cacaagcaag atatcaggcc 1740 cccacaggca acccacaagc gtactgtcca ccaacaaaca acccgatgtt tcgcccattc 1800 ccaggtaacc cacaggggta tcagcaaccc acaactaatc aacttcccac aggtagacag 1860 cagtatccaa tgaactctca gcagcaacaa ttagaacaag ccctaaaaat tatttctgaa 1920 tgtgtaaggt tagcctatag aaatggataa aaaacatccc aaatcactga aaatgtcaat 1980 atgccaggtt cactaacttc tcgtaattgg gattttggga ggtctttaag aattggtacg 2040 tggaatatcc acggtcataa aagcaaagag ctcggtaata aaacaaaatt agcagaggtg 2100 gttgatatca ttcaacaaca tgatatcttc ggaattgtgg aaactcatgc tagtcaaaat 2160 acagatttag ctgtcgaaaa attcaagcat ttcataaaaa caagaccaaa atctggtaaa 2220 aaaatttctg gagggatcgc actctatata agcaacaaag tagcagaagg agtcgcgtac 2280 ttaccttcgg aaaaccggaa tattatatgg tgcaaattaa aacgaaatta cttcggaacg 2340 gaaaaggata tcttcctagg taccgtctat tttagtcctc aaaattatga acaaacaaat 2400 gatgaggatt atatgtctga tctggaagag gatattataa aatatctcgg ccaaggggac 2460 gtcattctgc aaggggactt caatgctaga actagtgaac taactgaaca tattaatttt 2520 gatgaagata gatttttaag ccttcctgat gattatgaac tcgatgtacc atcgccaagg 2580 tactctgagg accactatac tgatagcaga ggaagatcac tgattgagct ttgtagtgaa 2640 agtaatttac gaatcgcaaa tggaaggata attggcgatt taacagggaa aaagacatgt 2700 tatcaataca acggtaccag cttagtcgac tacgtgataa gtagcaatag agtacggcag 2760 aaatttcaat ttcttaaaat tcacccattg cttccacata tttctgatca ttgccatata 2820 acatataata taaagattgg aaacaaaatt acggtaacac aatcaaaaag ctttgctaaa 2880 cacgcacgaa tattctgcca cggtacaaat gtaaaagaaa atgtggactc tattcttcgc 2940 tctgatatct atcggtctaa actggataac ctagtcagtc actgcgatac caattgccca 3000 gacacagcaa gcaatatcac atcaagtttt acaaagctgc tagttgagat cagtgagaaa 3060 gcgggtttta aatacggaga caagcagaaa tgtcaaaaaa caaacgcacc atggttcgac 3120 gaggaatgtc gatcagagaa ggcaaacctt aaacggtgtg gaaggaagat atgtaactca 3180 cccaatgaca gtgagctaag gcgggagcta ttttggaaga agaaaaaatt caagaaatta 3240 tgtaagcgta agaaatatca atacagagca agcggtatca aaaatttgga tttcaaagat 3300 agcaaaaaac tttggcgatc actcaagaat ctattcagcg tagggaaaga caaaaaacaa 3360 caagaatgtg atttagaaat agaaagctta cactcacact tcatggactt aaacaaaact 3420 acaactacaa atttatccat ccctaaatgt agagaccaga cgggtccttt agactcagag 3480 atacggctag aggaggtaaa attagctata gaaaacctta aaaacaacaa agctcccggt 3540 cacgataata tactaaacga gctactaaaa tatggtaaag atactttact accctaccta 3600 actaggttat tcaacatcat ttttaggtca ggagtgtttc cacaagaatg gaatctgggt 3660 tttattattc caattttcaa aaaaggcgat cgctctgacg tcaacaatta tagaggaata 3720 acacttttat catgcctcag taagttattt acatctatac ttaattcaag actctatgac 3780 taccttgtgc agaaaggata tctaaagaag gaacaagggg ggtttaggaa aaaacactca 3840 acagtagaca gtatatttat tctgaaaacc gttatcgaca gagtagtaaa aagcaaaccc 3900 aagaagaaaa acaatatgct tttcacttgc ttcatagact tccgaaaggc ctttgacagc 3960 attcctagag ataaactatt tgcgaaaata caacaagctg gtatttctgg aaacttttac 4020 gaagttctaa gatcaatgta ctccaatgat atatcgtgtg ggaagatagg ggattcaatt 4080 agtgaaagtt ttagatgcat ggttggggta aaacaaggat gcatgttgag tccaactctt 4140 tttaatctgt tccttagcga tttacctgat accttagcga aatcttcaag tgcccacatc 4200 ttaggcaaca caaaattaaa ttgtcttctg tatgcagacg acttagtact tttctcggaa 4260 acaagtagtg gtctgcaaga ccttttaaat agactttcta tctactcaga agaaaatagt 4320 ctaaaagtca atacttcaaa aactaaggtg atgattttta ataacatagg caaagtaatg 4380 aataactatc aattcctttt gaacagggaa caattggaaa atgtcaaatc ttataagtac 4440 ctagggctag tattcagcgc ggtaggaaac tttaacttag caaaagagga gcttaaaaaa 4500 accgcactca aagctttatt taagttaagg aaagatctcg gtattcactt cagatcagac 4560 attaatctta cattaaaact gtttgatgca ctgatcaaac caattttatt gtatggcagc 4620 gaggtatggg gtgccgataa taaaagctgt gttgatgata gagatccgct tgaatcagta 4680 catcttaaat tctgtaaaat gttactagga actggaaaaa cggctgtgaa caatgcgtgc 4740 agaggggaac taggcagata tcctctttgt ataaatgcaa catataggaa cataaaatac 4800 tggaccaacc ttcggtcaaa agaagaggcc ctctcaaaag tagtttatac agagtgtgta 4860 aataaccctc acgtgtccta ctggacccac aaaacaaaag aaataatttt caaagcgggt 4920 tttgggttta tgtggctcta tcaaaatgaa accgacccta cattgttcct tgatattttc 4980 tctaaacgac ttaatgatat gtattttcag aaatggcatg gggaaatttt caatgaccaa 5040 aggaaaaaca gtaacgaaat gaacaaacta agaacttata gaacttttaa agacaaatat 5100 gaattagaga attaccttgt agccatccct aatgtgaaac atagagttgc gctaacaaaa 5160 ctaagaataa gtaatcacca attgcaaatt gagaaaggca gacacacgag gccttacaca 5220 aaggaaaaag atcggatttg cccaacatgc aaaaatgacg tggaaaatga atttcacttt 5280 ctagtacaat gccaaacata caaagagcta cgaaactcag ttatccaaaa tttgcagcgc 5340 aatcaaatta cacaaaaacg ccttttcaat ttactaataa atccgccaac tcaattagca 5400 gggatagctg caaggtacat ttccgaatgt ttcaagctaa gggaaacgct aatatgaaaa 5460 attaaaccta aagcacaata gaaatctgaa gtaagcagag caaaaaaaaa aaaaaaaaaa 5520 tacaaataca aataaaaata aaaaaaggaa aggggaaaaa agggaagaaa aaaagaaaaa 5580 agaaaataca atgtaaaact aagtagtaac taaaaacaat cagaaaagat ttagaaaaag 5640 aaaaaatgaa agaaaggaaa tacaatgtaa actaaaacta agaacaatca cataatagct 5700 gttgtacgtc ttatatacgt actattttac ctttttttaa aaattttttg gtcactaacc 5760 gatgtaactt tactgtttca agggaccaat aaataaaatc tgtctgtctg tctgtctgtc 5820 // ID CR1-1_NV repbase; DNA; NEM; 3966 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-1_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3966 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3966 RA Kapitonov V.V. and Jurka J.; RT "CR1-1_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 395-395 (2007). XX DR [2] (Consensus) XX SQ Sequence 3966 BP; 1118 A; 928 C; 750 G; 1170 T; 0 other; tgcgcaggcg ccgatcatgg cggccacgat gttttttgct ctgtgtttaa ttttgtgtat 60 gatcggtact gttcctcatg aaaatctctc aatcaatgaa atggattcgt cttcgccgaa 120 acgcccaagc caacaccagt tcgggttttt ttgcactgtt ttcaagcctt tgccagtctt 180 attgcgcttg gcgccatcag gatttcaccg atcgacgcgt tccgtcacca agatatcaaa 240 acatggctac acatccctag caatcccagg acatgatcct ccgattgatg ttacaatatt 300 tatggacatt tctataaacc ctggcccaga aattcactta gattattctt cgagacctgc 360 tatggatttg catacagctt cgtacactaa aacaacacca acattctctc gtgagtccct 420 ctacagtatt cgccgccaaa tgagaacaag gaatctgttt ctgaaacctg ttaatatctc 480 attattttgc acactaaagc acctgggtat attcagattc agagggaaaa gagctggaaa 540 gaggaagaga tctgaagcta atttacaact tgaattacaa cttcatgtca acaccgtgat 600 ctcaagtgat cctggccgca accattctat tattaatgga actaagcttt gcgagaacaa 660 tagccaacac ctacctgtgc taatcaccac acgccatgat tattcgacca gcgccaacac 720 tcataatgcc aggaactcat ctaatctctt aaaaataaat tctgtaaaaa ttacaccgga 780 cagtgcgcct cgattacact tagctacttg gaatattcgt gccatgaaca ggaaagctgc 840 atctatctgt gatcttgtca tatccaaaag aattgatgtc ttagcccttg ttgagacctg 900 gctgactgct gaaaacaact ctaagtctac cgtggttgaa gacacaagca cacggttgcc 960 tgttcctaac tgctcagatc ccactgttgc cgatgtaata aacactctac gggacttcga 1020 ctttattcac ctaccgcgtg ctggacgagg tggcggcatt ggtttctttc ttagaaaggc 1080 tttaaatgtt aaacctaata cgtcgactgt ctttaaggct ctggaatatg ttgatctctc 1140 tatcactgca tcgagctcat caatgcgtct agtcaccgtt tatagacctc caccgtctaa 1200 agtaaacaag cttactactc gaatgttctt tgatgatttc tctgttcttc ttgaacacct 1260 tgcaatggat cctgggaaat taattataac aggtgacttt aattttcaca ttgaagaccc 1320 tggtgacgct gatgctgtca gactgttgga tatgctcgat gcagctggat tcgagcaaaa 1380 ggtagtaggt cctacgcaca gaaaagacca cacccttgac ctagttgttg tgcgggacgg 1440 caacttgtca gtgcgcggac gtcctgaaat cgttgcattc cctaactctg tatctgacca 1500 tagtgccatt atttgtgatg ttgacatgcc aaagccatgt gcctccaaga aaatactgca 1560 tcggcgtccg ttacggaaaa ttaatttcga ctcttggtgc aatgacatca gggattccgc 1620 catctacagt tctgctccga gtgatgactc tgactgcaac gtcttatgtg atcagtataa 1680 cactgtgcta aaccacttca tcgagaaaca tgctcctgtt cgcacttttt cagttacact 1740 gcgaccctat tcaccttggt atgatgatag tcttaggtta ttgaaaagac agaaacgcaa 1800 agcagaacgg agatacgttt catcgagatt agaaatccac cgccaggtgt acgaagagaa 1860 gtgtagagct tacagcactg cactgaatgt agctaagcgg aacttctaca aggatcaaat 1920 atctggttcc aatcagacgc agttatttcg tttaattgat ggccttttca gggtgaagcc 1980 ggttccgttg ctaccatcat atgaatcacc tcaagctctt gcagaagatt tcatcttatt 2040 tttcactacc aagattcagc atttaaagga caacctacga tcatcgcccc tgttaacgat 2100 ggagatgtca gtgacgccag ctcagccaca atgtgtggcg tcattccctg agttctctgc 2160 tgtatcagtg agttatatac gtgatatttt acaacaatcc aagcctaaat cgtgcatatt 2220 agatcctgtg ccgacaagtg tactaaaaca atccattgat gttattgccc cggccatcac 2280 ttccattgtc aacgcatctt tgtcatctgg tgttttccct acctctctca agggtggagt 2340 gatcaaccct tccatcaaga agcagagtct tgaccgcgaa gtatatccaa actaccgacc 2400 gattacaaac gttgccttcc tatcaaaaac acttgaacgt gtcgctgcta accagacgat 2460 gaactatctt atccccaacg gcttactggc taaattacaa tctgcttacc gccccttcca 2520 cagcacagag actgctcttc ttcgcgtctt taatgacatt ctgaccgcta ttgactgcca 2580 acaggaagta gtacttgttc tccttgacct gtcggctgcg tttgacacta tagaacactc 2640 ggctctgttg tcgcgtatgc aacatcgtta tggaattaat gagatagcac tccagtggtt 2700 caaatcatat ctaactggca gaactcaaca agtccttata gacggtgttc tatcctccag 2760 ccaaccactg cgttatggcg ttcctcaggg ttctgtactc ggcccgttgt tgttctcttt 2820 gtttttcgcg cctatcgaag atgttgttcg tgcacatggt cttggtgcga tgatgtatgc 2880 tgatgacacg cagttatatg tgtccatttg cccgtctgaa gatcggtctt cagttctatc 2940 aaggcttgaa gtctgtgtca aggatatcct catctggtgt acgtcaaatg gcctcgcttg 3000 taaccccgat aaaacggaaa ttgtacatat ctcatctcga ttcacgtcaa ccaacataat 3060 tcctgaaatc gacgttgatg gacatttcat caaaccagcc caggcagcac gcgacctcgg 3120 agtaatcatc gattcgagtt tatctatgac aaaacatgtc aacagcatct gcaaatcagc 3180 ctaccattct ataaggaaca ttggcagaat acggaaatac cttgaccgca ataactgtga 3240 gcagctcatt catgctttca taacttcaaa actagatgcc tgtaatagtc ttctgtctgg 3300 actccaagaa aaagaaatag ccaaactaca gcgtgttcag aactctgccg caagactaat 3360 cgttggtgct aagaagaggg acgccattac acccattctt aaggaacttc actggctacc 3420 tgttgcttct agaatagact ttaaaattct tacaatcaca cataaagctc tccacaacca 3480 ggctcctgaa tatatcactg aactcttaac accgtatacg ccatctcgat cccttagatc 3540 tgctaacaag aaccttctcg tcattcctaa atcacgaaca aaaacttatg gggacagatc 3600 tttttcaaac tttgcagcta aattatggaa ctccctcccc ctacacatta gaaacaccga 3660 ctgtctcagc aaatttaaat cgtctttaaa gacgtactta ttttgtaagc actacaacaa 3720 ttgattagtt tttaaccatt agaaatatta tcataagtat tagtattaag atatgtatat 3780 atatatgtgt atgtgtgtat atatatatgt atgtgtgtat atatatatgt atgtgtgtat 3840 atgtatatat ttgcatcagt tatatatgtg taagatagag ttttagcaaa attattgagt 3900 agaatagagt aggatgtttg taaagcattg agatttttat aatgctatat taaattatta 3960 ttatta 3966 // ID Gypsy-17-LTR_NV repbase; DNA; NEM; 214 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-17_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17-I_NV; KW Gypsy-17-LTR_NV; Gypsy-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-214 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-214 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-17_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 464-464 (2007). XX DR [2] (Consensus) XX SQ Sequence 214 BP; 74 A; 20 C; 45 G; 75 T; 0 other; tgtagtgtat tagcattaag atatttatag gattaacact agtgatgatg taattgatta 60 tgtatgtaat gattgcgtga caagtgattg ttatgccata taaggtcaaa ggtgtatact 120 atataattat ctgaattaaa gaataaagtt agtctacagt acgaatcgaa gtgagcagtt 180 gtcttgttat atgctgagct agagatattc caaa 214 // ID Gypsy-30-LTR_NV repbase; DNA; NEM; 138 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-30_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30-I_NV; KW Gypsy-30-LTR_NV; Gypsy-30_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-138 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-138 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-30_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 492-492 (2007). XX DR [2] (Consensus) XX SQ Sequence 138 BP; 42 A; 34 C; 33 G; 29 T; 0 other; tgttacgata tgatcggtct ccctgtggta gcgcccgcta ggagtcagcg gacttgtaca 60 gagcgaacac tcgacttgca atggccgaat aaagacaagt tccaaaccca gctagtacag 120 taaatatgta ccgaaaca 138 // ID Harbinger-N19_NV repbase; DNA; NEM; 228 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; Harbinger-N19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-228 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 177-177 (2007). XX DR [1] (Consensus) XX CC Harbinger-N19_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N19_NV CC transposon is characterized by 30-bp TIRs and 3-bp target site CC duplications. XX SQ Sequence 228 BP; 97 A; 46 C; 49 G; 34 T; 2 other; gggacrgacc atttgatatt tgacgggggg ggggagtagc tgattcmacg aaaaaaaaat 60 tcgagcaagg ctcaggccct taaaaaatcg agcaagcaaa gactggcaga aaaaaataac 120 atccttcggg aaaaaaatcg agcagcaaaa ctgtccggga aaaaaaattc gagcaaaaaa 180 aaaaaaaaaa aaaacactcc ccccgtcaaa tatcaaatgg tccgtccc 228 // ID DNA-6-9_NV repbase; DNA; NEM; 490 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-6-9_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 6-bp TSD; KW NVREP107; DNA-6-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-490 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-490 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-490 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~95% identical to the consensus. It was reported CC originally as a part of the unclassified NVREP107 transposable CC element [1,2]. XX SQ Sequence 490 BP; 151 A; 109 C; 94 G; 136 T; 0 other; caagggcacc caacgacgaa aatttcacaa ccggcctaaa atgagttaag ataccgtttt 60 tattcgtttg cagtcatttt tatacaatat agagctttcc tagatatttt ttatctgttc 120 ggatttgcta ggcgaaatta cagccatccg aaaaatctag ttactcatcc cgaggcatcc 180 gaaactccta gcgattctaa gatccttaag cgaaatttct aggtaatgtc ccttgtatac 240 tcgctcccga aaatactagg gttccttttt ttaaagcatg tcggacgtaa aaatctcccg 300 aaaatggtga tggtggtaac aaaagcaact ccgaaaaaca taggtgatcc agctctcttc 360 ccgagaaaca taggtgatct agaaatacaa attccgaaaa aagtagacat ttctaggccg 420 accccgaaat ccgtaggtga ccttgcttcc gaacagatat ttgaccgaaa atggtcgttg 480 ggtgcccttg 490 // ID DNA-TA-2_NV repbase; DNA; NEM; 492 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-492 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-492 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-492 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 492 BP; 161 A; 75 C; 94 G; 162 T; 0 other; ccttattaca cttaattttc gcgtcacttt aatttcgcga atttcgcgat tttaaaagat 60 tcgcgaaaat aaagtgacgc gaaaattaag tgtcgcgaaa attaggatgc gcgaaaatta 120 agtgagtaca caagaagcct ttgggggaat attggccgtt taataagctt tatggaaaca 180 ccttgtctat ttagtcatct aatgtacata tagtacggta aggggttgag ttggacttgt 240 atttatagat ttttatgaaa ctaaatttag cccacgcatc tttttgttac aaattgtttc 300 agttttgatg attacagcac attttaattc cacttgtttt gcttgatttt attatcccaa 360 aatcgcgaaa tcgcgaaaat aaagtgatct ggtttttacg aaaataggaa aatcgcgaaa 420 ataaagtgtc gcgaaatatc gccatctcaa aatcgcgaaa ttttgacgtc gcgaaaatta 480 agtgtaataa gg 492 // ID DIRS-37_NV repbase; DNA; NEM; 1652 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-37_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-37_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1652 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1652 RA Kapitonov V.V. and Jurka J.; RT "DIRS-37_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 433-433 (2007). XX DR [2] (Consensus) XX SQ Sequence 1652 BP; 431 A; 382 C; 352 G; 487 T; 0 other; cttcaaagcc caaaatttgt tatcagctcg agaaatcccc aggctgtttc gataaaggcg 60 aacaaggagg tggcggctaa taggatagca ggcccctttt catcttttcc actccctgat 120 ttcagagtct ctaccttagg cctcgtacct aagaaggtgg caagggaata ccgtctgata 180 caccatctgt cttttccaaa gggctcttct gtcaatgacc agataccaac agagcatact 240 aatgtccatt atgcgcggat tgacgatgcc atggccttaa tacagggcac aggagttggg 300 tgctacttag ctaaaactga cattaaaaat gcttttcaga taatccctat tgatcctgat 360 gatcacagtt tgttaggcat gaagtggatg gggcaatatt atttcgatcg ggcaatgcct 420 atggggtgtg tagttcgtgt agaacttttg aagaattcag ctctgctatt cagtggattg 480 cccaatacaa gtgcgggata aacaatatac tgcatatctt ggatgacttt ctgattattg 540 aaccttcgct ccttgcatgt cagtcaagct tggaatcttt cctgggtaca tgtgattttc 600 taggcgtacc catggctccc gagaagactg caggtccagc tcagatcctt tcatttgctg 660 gaatcaagct tgataccgta cgctccattg ctcgtctccc tgaagacaag ctgaacaaat 720 gtagagcact tattgactct ttcttgggtc gcaaacgggc caccaagcag gaattatagt 780 ctattaaaca tctctttggc gtggggccaa ttgagtttcc catccaacca actagccttg 840 ccttgtttat atctttttaa gcaaggttat cagcctcaac tgtatcgaaa tataattccg 900 ctttaggata ttaccacaga caagccggtt ttgcggactc tacaaaatgc aattttatca 960 ttcaaatgct aaggggatat actaaaatcg gtcaatcttt ggactcacgc ctacctatta 1020 caatacctat cctaaagctt atattcagct catgagcctc ggtttccagc agtcattatg 1080 aggcatgctt attcagagct atgtgcttgc taccatattt tgcatttatg agggttgggg 1140 agttccaatg tcatcaaaag tcgccccgaa tcaaatcata caattgtctg atatatctca 1200 gctggttagt caggaccaat ttgttgcttt gaaagtgctg tttcgcagct tcaagcatca 1260 ttacaatacc cgagcctgcc ctattctggt tatgaaacag gctaacccta acatatgccc 1320 ggtccgcggg ctaatggatt aattggtcgt taggggttca gcccctggcc ccctctttat 1380 gtcttttcaa ggccgtacca tatctagggc ttatttttcg ccacagctcg aggccacttt 1440 gaaactgaac catttagacc cctcaaagtt caaaggcaat tttcgcatag gagcagcctc 1500 ttatgcagca gacagaggta tgtctgatgc gcagattctt ctcatgggac gctcgaaatc 1560 tgaagcgttt aagaagtata ttaaagtacc atgtttgact agctgcatat agccgctccc 1620 ctaggagtgt atggggatca cttgcatgtg ca 1652 // ID Helitron-N9_NV repbase; DNA; NEM; 1516 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Helitron-N9_NV non-autonomous DNA transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW NVREP12; Helitron-N9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1516 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1516 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1516 RA Kapitonov V. and Jurka J.; RT "A family of Helitron-N6_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC This Helitron transposon was originally reported as the CC unclassified NVREP12 transposable element [1,2]. It contains CC short palindromes at both ends. XX SQ Sequence 1516 BP; 449 A; 284 C; 251 G; 532 T; 0 other; ttactgggat acctgtggta gcccagtcat aaaatgcaac tgtttttttt tgtggtcccg 60 ggaaatctgc aatgtttcgc aataccccaa gagcctttgc gccacagtcg atacttcgct 120 tgttttagtg tattgattgc gaccttactg aagccttttt cttacacgaa gtatctagcc 180 tactgtccta cgtcatcgca acgcttagtt accaaaaact tttgcataat ttaaaactgt 240 gtcatggccg ccatcttgaa tttgagattc cagctctcag atccatgtta tttgtgcagt 300 tgaaggcccg attcgcgatt taataactgc atatttaacc atagcctcaa tttctaccaa 360 gttattttgg aaaatcatct cagcttggat tgatttcgct gtatttactc gtgtttacat 420 ttgcgacccg agtgcgagac acgcggctca agataagaat taagtgctga ctgctttaga 480 ctcatacagc ttacttcaag acgtaattaa atgtgctctg gacactcatg aatggactcg 540 aggtatttac cttgattgct taatctattt tgaagtggaa gtagtttgaa acaattgatg 600 gaaatcgtct cctacaaatc gctttgtcga tgaatctact ttacattgga cacttgaccg 660 gctaccctaa gatgaatttt attttcttac tataaaatat cttgatctct ctcattgaat 720 ctcatcattt taaccatgtc gattttaata aagtacagca taggtgttgt aagtcatgta 780 agtgtaaaat atgtacttaa atctatgaaa attattttgg tactttggtg cttcctttag 840 ataagcttaa gttttattat ttccctgaaa tacctttatc cctcattgaa tgtcatttta 900 tttttatgga acaatttcaa taaaatctag agatttgtaa tatttttgta gtgttgttga 960 tcttgaaaat atgtttatgc tctataaatt tcaatcaagt ctggatattc tatagccctc 1020 tcatttgact tcaaaataaa taattgttgt tgtttacttg taacttacat aaataaaata 1080 atacatttca ataaaattat attgttaata caataggact tactttgggt gttaaaataa 1140 atttacccct aagtgatagc acattgaggg cagtgaacca aagaaatgtt taagaaataa 1200 caattttaaa acacattctc agctttcctt aatcttattt cgatgctaac tctgatgtgg 1260 ggatagtatt tgaagatagg acaatcagcc ctgtctactt tcatggagca cacctcgagt 1320 ccaccccaca cctgaagaga tgatgctctt acctttcttg ccccaatcag tgttgtgata 1380 tggcatttac aataaaaaac aagattatat atttttttat tatatccaaa gtaggcagta 1440 aaatctttgt catacatgtc acacaaacaa gttgcagatc tcaggtatcc cagtcaaccc 1500 tgcgcgcagg gtctag 1516 // ID Polinton-5_NV repbase; DNA; NEM; 19102 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Polinton-5_NV autonomous DNA transposon - DE consensus. XX KW Polinton; DNA transposon; Transposable Element; Polinton-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-19102 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-19102 RA Kapitonov V.V. and Jurka J.; RT "Polinton-5_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 651-651 (2007). XX DR [2] (Consensus) XX SQ Sequence 19102 BP; 5173 A; 4920 C; 4521 G; 4317 T; 171 other; agtagtaaag gtagtctgta tatggggtgg attccagtcc cccggccgcg cggtcgtggc 60 gcgttctgat tggttgttga aaatggcgtg ctgtgattgg ttggatttga tggggcggaa 120 gtgacgtcac gggtggactt tggacttggg tctttggact ttaggggagg ggtggtggtt 180 gggattggtg ggatttgatg gggcggaagt gacgtcatag gtgagggtat tattatggga 240 taccctaaaa agaatatata agatggaaat tttgaagcga agaacattgc tgctttgttt 300 gttgatgatg aagtgttttt gtgacgtaga ggtcaaaaaa gtagggtctg ccttaaagtg 360 cggtactcct gtggattttt caaaaggtca gatagggtgt ggcttttatt tcaatcaaga 420 cgaggctgaa gcagtgmgag aggctgtcga ggagggagtt aacgtcaccg attttccagt 480 gtgtgaacat aacctcattt gccgtgtcgg agtgagccgc ggtcagtttt ccaacggtcg 540 tgtgtatttt gcgtgtgacg tgagacctcc aaacaagaaa tgcgaccggt tcgtgtgggc 600 ggagccgccg aaggaagcaa agaagacgaa ggcagtgcca ctatggacac caccctccaa 660 gaagaagaag ggcaagggca aaggcaagaa gctccctaca acttgcgtaa acgtaagcgt 720 tcccgttccc ccrcccaaag aagaagacgt ggaggaggag gaggaggatg tggaggagga 780 ggaggagatg ccggatgtag tggaagtgat accgatggcg aagaagccga gaaagtagtt 840 gtcgtcgaga gtgacactag cgatgaggag gaggaagagt ccatggagtc ttataacgaa 900 cttgacgagc ctcaggcgac ttacgatgtg attgatacgt ataacgtcat gcatgtcgtg 960 ggtcattatg tggaggcgtt gatyctagac ctgatgggag agtgggctcg ctttgtgcac 1020 cgtgaccatg agctgtggaa taaggccttt tataaggcca gagctaccct gaakggctgt 1080 atggaattga catgggaggg gctgcaaaac ctgagtgata gacttgggct tgctgtgcaa 1140 ggtcattgga aatcttacat tcaagatttg ttggactgtc taacccccgt ggatatttta 1200 aagatgctcc agaaggggga gttgcctggc ttgttgcggg gaagagagga acaagtttgg 1260 ggtgtgacca gagacattgc gcgtcaaatt gcaggggaaa ccccttcacc cgtcacccct 1320 ctttcttaaa gaaaagagac atttgcttgg ttataaacgt ttttattaac catttgtatt 1380 ttatacaaaa atgttttaaa taaaataatg ttctttttaa aaaagtgtcc gtcatcttct 1440 ttgacccgta gcaaagtcta tggtccctgt gtccckgtgt gggggtgcca ccatccagtc 1500 ttctatcccc cacccrtctc ggtagttatc atcgtcatca tcgtcgtcat catcaatcac 1560 gatcactggt ggggtggggt aggctctagt ttgttgttct cgttcttctt cggcaatgtg 1620 gacacgtggg tagtagtcct cggtattctt gtaccttgta ccattcgttt aggcaccggt 1680 ggtgcatagt ttgcttgcag catttaatca cctccattac ttcttcctct tcttctttac 1740 aaattatgca ttccattatt attttttatt attattttga attttttatt gctttgtcgt 1800 ttttgagtct tggtctgact gtgaagtgat cccggctcgt cgtcgtcttt tatagacctt 1860 caagtaggtc acgtgtatcg atgagatcat cgggaacgct tctgattggc taagggatgt 1920 attgaccaat cagaggcttg gaaaacggaa gacgtcatac cgatgatgtc atggcttatt 1980 tttataccca cccctccccc tctctttttg cttttttggt cataaatgtt attawaaaca 2040 gtatagagtg tttttaaaaa taaaaaataa tggtcacggg aaccctgtgt atcgatgaga 2100 tcatcgggaa cgcccctgat tgggttaagt atttttattt gtccaaaatt caagcttttt 2160 gattggataa gagttctata aaagaggtgg cattttcact cgcatttcag tttgttcttg 2220 gcgaacttcg ccatggctta tgatggtgat gatggtaatg atgagtggct tacccaattg 2280 ttagaagtgt tacctgatcc cgaagaagaa gaagaagaga gtgaacgact tcctcctgat 2340 ttttttcacg atgatctcgc tgagtcggac ttacctcaat ttagttcctt tgacgaattg 2400 tttgactatt attgcacccc agagggggag ggtgaggaga tttcgtttga agatcctttt 2460 ttgaacgaac ctgggccttc cgggttgcaa caacaacaac aagaaggtcg tgggaagaaa 2520 cgctctcatg atagtgatga tgaggaggag gaggaggagg aggaggatgt tacgtatgat 2580 ttacgtcaag tgactactcg acattctacc aaaatgcgta ctgactgtac cgattacgaa 2640 ctgtcggtcg atctacctac tcgtggtact atcaaggaag ctttggagga tgtggagcgg 2700 gtgttagacc gggtcctcga cgacacgcta cgcggggtgc aaaagcacga ttacgcgcgc 2760 cttactctcg atgcccctgc tctcaagaac cccattgctt taccgtttat gcgccgtcat 2820 caacttaccc ctcaacgcat tatgggagtc gttgagaccg tggtgcaatc gaacgaacag 2880 tttgtgttgc aaggtaattt ccatctccat gtcgtacgca cgcacatgcc ttttggggct 2940 gggaaacggc caaagtctaa gaagaattcc tctaccctgg atacgggaga tttagagaca 3000 tggcttaagg gaaaaaggag catcactcgc gttaggaatc acgacgaact gtgcgcggct 3060 cgagcactcg tgatcggaat ggctcatctc actgaggatc ctgactatgt taagttgtac 3120 aacccaaaag atggtggcgc tagacttccc ttgcagacgg agcgcgctcg agcattgcac 3180 cgcgatgcgg gagtccctga gggaccgtgt ggtcttcccg agatccagca atttcagcgc 3240 tatctgggtg aacgcggctt cgagcttaac gtggtgtcga gggaacacgc gaacacggtg 3300 atctattctg gaaacttacc tgctcccgag tacaggctct acctctacta cgccaaggga 3360 catttcgatt atatcaatag catgccgggg atgcttggtc gctgttatta ttgtacgagc 3420 tgtcaaaagg ggtacgatcg aaraaatcac aagtgtaaca acctgtgcta tgggtgcggt 3480 gagcaagagt gttccccctt ggtgccaccc gccgaacaag accatcgttg ggagtggcag 3540 tattgtgacg agtgtcaccg gtactttcgc acgcagacgt gtttcgagaa ccaccgacgt 3600 gtcaaacctc gaggagtcaa gaagcgtggt ggtggtggtg aaccccagga ctcttggtcg 3660 tattgccaac ggtaccacaa gtgcgagacg tgtggtaaac gcgtcgatat gatggatcga 3720 aaggaaggag aagagcatgt gtgtggagag tacaagtgct ccgtgtgcaa ggaagtggtt 3780 ccccccgatc atttgtgtta cgtgacggtg ggtgacgatg ctctcccgaa gaagaagaac 3840 agcactgacg atgatgacga ttcgatgcgc ttgatcatct ttgatttcga ggccatgcct 3900 ctggaagcca agcacactgt gaattttgtc ggggtgcaaa aactgtgtga gacctgcaag 3960 gggtggtcta tggatcgcct ggagtgcgag acgtgtggac ttcgcaaacg cagttttacc 4020 acggtacaag cgttttgcga ctggctgttc gatgggagta atgctggcta cacgtgtttg 4080 gctcacaatt tcaaaggtta cgactcctat ttcatcctcg aatacctttt tacgaatggc 4140 tttaaacccg aagtgatttt caccggagga aaggtgatgt acctgaacat caagtcgttg 4200 cggatcgaca tgaagtgcac cctgaacttt ctgcagatgc ctttgagcaa gctccccaaa 4260 gcttttgggt ttgatcacgt gacccaaaag ggaacgtttc ctcatttttt caacaccccc 4320 gagcaccaag actacgtggg tcccatgccc gacttgagtt attacgacct tcaagggatg 4380 aaagaagaag atgcccgcgc cctacgtgcc tggcaccaag ccgaagtggc tcgtggtgcc 4440 gtgtttaact tgcaagagga tctcgcttcc tactgtcatc aggacgttga ggtgctcaag 4500 agagcggtac tcgctttcga cgagctcatc atggccgctg caggtcttca cccgttccag 4560 gtggccatca ccattgcctc gttgtccagc cgtatcctgc gcaccaagtt tctggaggag 4620 aagactattg gactgatacc cacgcgcggg taccgtggcc acgacgtgca atctctgaaa 4680 gcgttgcagt ggttgaagta catcgaacat cgcgagggag aaggagtgtt tattcagcat 4740 gccgggaacc gtggcgaagt gcgtttggca ggtcggatca aggtggacgg gtacgccgag 4800 tctaccaaca cggtgtacca gtaccacggg tgtttctacc acggttgcac cacgtgtttc 4860 cagcctcaca ccgtcaaccc tttgacgaac accacgatgc aagagcttcg cgagcatacg 4920 cgtgcggtgg agttgcgtct caaagcccag ggctacaact acgaggaggt gtgggagtgc 4980 cagtttgacg cgcaactcaa cacgcacccc gaactgcgag ctctcgtggg ggatgtcgag 5040 cacggaaaac ctcttgaagc tcgtgatgct tttttcggag gaaggaccaa cgcgattcga 5100 ctgcattgcg aagccgacgt ggagcagggc gaagagattc actactatga ctttacgtcg 5160 ttgtacccgt gggtcaatgc catgtgcgag taccccgtgg ggcaccccga cgcgatcctt 5220 accgagaatt tcgaagaaga tcttcacgcg tacaagggac tgatgaagct acgtgtttta 5280 ccgcctcgcg acctgttctt ccccgtcctc cctgtccgcg tcaacgacaa gttgatgttc 5340 cctctgtgtc accggtgtgc ccaagaggag gagcaaggct cgtgcacgca ttcggacgag 5400 gagcgggcgt tcacgggaac gtgggcccac cccgagattt acaaagctct agagaaaggc 5460 tatcgcgtga tccgtgtgta cgaggtgtgg cattgggagc gctgggcacg gttgtttgaa 5520 gagtacatca agaccttctt gaagtacaaa caagaagcgt cgggctggcc cggctggtgc 5580 accaccgacg ccgacaagat gcagtacgtc gacgattacg aacgccacca aggcgtccgt 5640 atggatccta gcaagatcga gaagaaccca ggcctccgct ccgtggcaaa gatgggcctg 5700 aattgtatgt ggggaaagtt tggtgagcag cccaaccccc aacgtaccga gtacgtggac 5760 gaccccaaag cctactttgc tctgctgaac aacgacagta tcgaggtgaa tgatgtgctc 5820 atcgtgaacg acgacctcat tcaagttcac tacaggctgg gggaaaagtt tcaagagttg 5880 aaaccccaca ccaacgtggt gattgcwgcc ttcaccacgg cgtacgcgcg cctcaagttg 5940 tacgacgtgc tggacgggct aggggaacgc tgtctgtatc acgacacgga cagcgtcatt 6000 ttcttacatc gccctggaga gtggaaacca cccctcgggg actatctagg agacctgacg 6060 agcgagttgg agccaggaga ctttatcgat cgttattcgt ccacgggacc caagagttac 6120 gggtacacca cgcaacaggg ycattccacg tgtaaagtga agggacttca catcaacctt 6180 cgcacggctg atatcgtgaa cctgaccagc atgttggaac tcttgcgcgt tgaaggcgcg 6240 gtggcggaag agcgtcacgt tactctccct tacaccatcc agcgcaatgt gcacgacaga 6300 actctacaca cggtgccggc gcacaagaca tttcgtgtcg tgtacaacaa acgcgtgcga 6360 cggggcatgc gcacttaccc ttatggttat tttaagttgt aaaaataaag agagatgtaa 6420 ataaaaaagc cttcttttct gtggtagtag gatgttgttg ttttgtatat aaataaggtg 6480 aggggtggta gggaaggaat cacttgtagc atgggttgct ttggtgcgga tcctcttcaa 6540 ccgcgtttcg attgtcgtac ggtgtgggaa cgtttacggt gtctctttgc gtgttgcggg 6600 ggacgaatcg aaattcatgc atcgcaactc gatggcgccc cagccccacc ccctcccacg 6660 cccaccatcg tccgtgcgcg aaaaaaagag aagagtatga agaagaagaa gatgacgacg 6720 atgactcaga agacgatcga tcgtcttctt cgcccaattt attacgatcc gaatcatcca 6780 gcagccttgg ggggagtgga caaattagtc cgagcggtac gttccaaagg agtgcgtcgt 6840 gcccaagtga attcgtggct tcggagccaa cccacctaca cgctccataa accgtaccgt 6900 cgtcgctacc cacgccaacg ggtggtggtg aatggtatgg acgaacaatg gcaagcggat 6960 ctgtgtgaca tgcaggcgtt acgctcgtac aatgacgggt acaactactt actcaccgtg 7020 attgacgtgt tgagcaagta cgcgtgggtg gtccctctca aggacaagac gggcaaacgg 7080 ctcgtcgagg cgtttgagtc gattttcgag ggtggacgcc agccagaaaa acttcaaacg 7140 gacgatggca ccgagttcaa gaatcgaatc ttccaggcgt ttctcaaatc caaagggatc 7200 caacactttt ccacgcgaag tgaattgaaa gcttctgtgg tcgaacgatt caatcgcact 7260 ctcaagacct ggatgtggcg ttggtttacg cacaaggaga cacgccgtta cgtggacatg 7320 ttaccgcaat tggtgcacaa ttacaatcac tcgtaccatc gtagcatccg acgtgctcct 7380 gcggacgtgg tcacgtacga cgatgctcag gaggtgtggg ctatcttgta cgggaagaaa 7440 agactggggg acccaaagaa gaagaagaag agagctccac ccaaatttaa cgtgggggat 7500 agggtgcgga tcagtaaagt caaacacgtc tttgccaaag ggtacattcc caattggacc 7560 gaagaagtgt ttacggtggg tcagcggtac aacaacacga atcagaagaa ctacgcgtac 7620 cgacttcgcg agtacgatgg aacgtggtta gagggtcggt tttacgaacc cgaactgcaa 7680 cacgtcagtc tcgacgagca acgggatctg ttccgcatcg aacgggtgat caggacgcga 7740 gggaagggac ggaacgaaga gtatttcgtg caatggcgtg gatggcctga caagtacaac 7800 agttgggtgt ctgcccaaca agtgcataaa atcttatgat ccacgtggcc tgcacccagt 7860 tgtttcgtgc accatgacag accaacatca tttccacgtg acgttaccca gcaatgccat 7920 tcaaggcgcc ttacccggca ataccattaa cgatttttcc atacgcacgc caaagacact 7980 ggatttgcgt gaggggcagt gggaagtggc cttggtgtcg ttgatttacc ctcacacgtg 8040 gacaaagttt gcctaccacg agatcatgat atctggatct accatcaagt wcccgaagcc 8100 agtatggctc caggctaaca aagataaccc taaagcacgc gtccccgacg aaagcaawat 8160 tgatcacaaa tggtacgtat atcaaactgg acgacttcat aagtcccgaa atggcacgaa 8220 gttgccttca atctcaagaa ggctatcgat caattcaaca aggatcgagc aaccgtgata 8280 cagcaactgg ggcaaagggt raaggatgtg gacgtgacga taaacactac atcgaaaaag 8340 actcaccatc aagatcggga aggacgttca actcctcctg gccatgcgag tagccaaggc 8400 tttaggattc aagcaatgga atgtttcggg ggaatggctc gccatgcaac tgcakcctga 8460 tgatggtatt ctcccctact atcagtttgg ccaagccgaa atacgaggat tcgacgaatt 8520 tctctcatct ctgggtactc ttgagctacg acgamctgag ccaattccca cgctccgatg 8580 gttctgccaa gccagctact craccgttcg cctccaagga amccgatacs cccatcgaaa 8640 cgarctacgc cccttttcaa gacatgtacg tgtactcgaa catstccgak ggcaatctcg 8700 tcatgggaag ccagtatmay aatctcttac gagtgctgtc gcctgaagga aaacatggtg 8760 aagctgtgga acgaaatttt atcaatcctt tttatttccc gatacgtctc caagtgatcr 8820 acaagattca cktctatata accgacgatg caggagaacc catctcattt cagtctggtg 8880 cygtcgtggg aacattacac tttcgacgcg ttcgattcgc ctgacgataa aatgacctca 8940 agaacgarag tatattctca ccttatctag ctcagacgar gaaraagcgc taccaggcag 9000 tacaattggt gatttcrtcg tacgtccaca aagaggcgat cgacttacgc tacggaaaat 9060 gggaagtggc ctttacstcg atcatctacc caccgtrctr tgatacgctg gacgagacga 9120 acacgatatc tggatcatgt gcaamtatct ggatcctgaa accttgacct tatctgagtc 9180 cagtggttca aaagtgccca cgggagagat ccaatttcga tggcacaaga tagmcwtacc 9240 taaattcaag atgaatgaca cctgggagac tgtcacgaaa cacatcaaga cgaccgtcac 9300 cgcctttaac gagtcccgag aaggtattag acatggctta aagcaaaaty atctggatct 9360 agagttcttc ttccgcccga gtgataaact aaccacgata ggtgtgggac gagscaatmg 9420 agtgttgatc cgacccgaga ttggtagcat ccttggtttc gacaagtcaa acgcctcaca 9480 aggtcgatyy gggcccccga ataaacycat cccactgtcg accatctacc cccctgatta 9540 cccccgggag agaycttgga ctgaccctct atcaagrtgg ctggtatttg attattatta 9600 ttattcaaca aatacagcag tgctggggtt ygactccaag tcaaacccaa aaccctacga 9660 gaatcatcca cccttccaaa acatgtacgt gtactcgaay ctcaccgatg gcaacctgat 9720 gctggggagc aaggcgcgca atgtattgcg agtgatggct aaccaaggyg tacctggagg 9780 aagagctgta gaacggaatt ttgaacgtcc gttctatttc cctgtacgtc tgcgtctcat 9840 cgagcaaatt cacatctata taaaggagga tacaggaaga acrgtgccat tttcatcggg 9900 aagcrtcaag gtgacacttc attttctkcg cgtagcaysa taatggacca acgtcatgtc 9960 tttcgyaaag aacgccatgc ctagcccaag acattcgctt ccaacaagct attttggctg 10020 ttgccctcaa aatggaggca aagtggaaac rggttgggtg gcccagcctt ccggctatcc 10080 catctcaccg cagttggaaa atgstgcagg aagtggtccc gcctttcgcg ggtacscyat 10140 ctcggcagtt ggggtatggt ccaggaaatg gtccagcctt tcgcggctac gccatctcgc 10200 cgcaacgggg gtatggacca gctttcagcg gatgccctag ttggggtatg gaccggcttt 10260 cagcggttac gccatctcgc cgcaacgggg gtatggaccg gcctttcgcg ggtacgccat 10320 ctcccctacg aatggccctt tagygggtac gccrtmtcam cgcggcaacg agggtccggg 10380 tatgccatac ctcttggaat ctacgtccct cctcgttctc gacaaagcgg ccgtggaaga 10440 aaaaagaccc cggctgttaa gtcagagttc cacccaagac ggtccccatt gctgcaactg 10500 ctgtccaaca cacccgacgt ccacgtcctg tcgtcgtaga gtcgttccaa cggcccgtgc 10560 acgcagtcct gacatttacg actaaaaaag ataaagatcc actccatcac ttttcctact 10620 tcagttggta atcrgacttg ttacgaagaa gagctcttct cctccacctc ctcctcctcc 10680 tcctcaccac cacgatgagt gtctttaccg ggtcaaamca rgtcgcyaat sctgggatgr 10740 atttgttcac acttccccct acagatgtcg cyttagccaa tgggcattac attccgtata 10800 ccccwtycga tgaaggggac aatcacattg agtggtacat ttcycmtagc tccacttaca 10860 ttgatctgaa gaaaacacac ctacgcctgg aagtraaaat cacaaaaggt gatggctctg 10920 accttgctgc aggggaaaaa gttggctttg taaacaatgc cttgcattcg atgatcaagc 10980 aagtcaaggt cgaattgaat aatagacccg ttacactaca atcggattcg tatgcgtacc 11040 gtgcctacat cgaatcactc tttaactact ccaaggaagc tcaagaktcc tacttgactg 11100 gtgcactctg gtacaaagac accgctggtc aacatgaaas tacagcagtc gcaagttccg 11160 gttctggcgt cgctaccaac caaggattga waacacgcgc cgccttcacg gctgaaagcg 11220 caaccgttgg actgaccgga cctctattct gcgacatatt ccattccgag cggtacctac 11280 tggaccaaat tcccatcaag atcagaattg aactgcaaaa accacaattt gccctcatgt 11340 cccagggtga aaatcmcctg ctgraaaatt caaagtttcc ragggagcag ttctwcgcct 11400 gtaccacgtg acccccaccg acacygtcag gttaaatcac gcgaagaaaa tgcttccccc 11460 tcaaacacaa cttggccaag taccccttaa ccacagctgt agtcaaaacc gggcagatcs 11520 taagcggaaa acgctccata ctgttcagga acctattcaa tggactcgtt cctaaamgga 11580 tgatttttgg aatcgtcgag gatgccgcct acaatggaga ttacacaaag aaccccttca 11640 atttccagat gccccaatct gagckctatc gaggtcaaag tggatggaaa cgaaacacct 11700 acatckcaag tctcaaaaat atagatggtg aaggcgtgga tttgtaccac ctgctgttcg 11760 acaacgtgtg tggtmcgtat cgcggaagag gactgaacat cacacgggaa gaattcaaaa 11820 awgggtacgc cttattcccc tttgacttca caggtgctgc gaatgcgtca tccgggtact 11880 tccagcctca gtataaaggc gtggtaacgc tcgaactctc attcaatgmk gccaccgaca 11940 aggtgtacac agtcgtgctg tacggagaat tcaacaacaa yatggaaata gacccygcac 12000 gcaacgtgat gtacgacatt caaggttraa aaaaaaaaaa tggatgacgg ttggggaaga 12060 atgatgaatc ttggagctag acgccatgag gaccgaagaa ttggaagcca tggcacgcag 12120 cgacccctac atagaatccg tgtttgaagg ggtgttcccc tcagatcgtc tacccacctt 12180 catcccwgaa gatggaaacg gttgcgccgc atacattgtg aatgtggatc ctagcaacaa 12240 accgggaagc cattggttag csgtstactt tactccacac cgatgcgaat ggtgggatag 12300 ttttggtttc cctccacatg cgtayggaca gaacatgryc gatttttgtg ctctacgmcc 12360 cccacccgtc gtgacgaatc cacaacgtct ccaagcttta aactctgccg tgtgtggaca 12420 gtactgtctg tttttyttgt ggcaccgtac tcgyaacaaa cctttggaag acattacttc 12480 catgtttagc actcacmccg attggaacga tcaagtggtg tgcacgtttg tacacgacac 12540 gttccacgtg agagccttgt cacaacaacg acgacggcgt gtrccgtatt gcccttggcg 12600 tcagtgtgct gtaccccagc accatttagt ccacgccctt aacgaytctt aaaaaatcat 12660 gtaataataa taataaaaat aaaaaatktt tggactacct gtgtgtttta ttatttctac 12720 ttataaggga aaagaagtgg tgrgggwaag atcatttacc ctagaggtmt cgagccagga 12780 tggacgatcg tcgatttcgt tgtccctgtg ccgtcatggt ggtgggacck agtcaatcgg 12840 gaaaaaccac ctgggtccat gccttgttgc aacaagcacc tcgggccttt gacaaacaat 12900 ttcgtaaaat cgtctattgt tacggggaat ggcaaccctt atttgactcg atgcaacgcc 12960 aattgggtgt cgaattccat catggtttac ccgactccat cacagaccta tttggaaaac 13020 acgatacccc aggcttgctc atcatggacg acctgatgga tcaaatcgac cgggtggtga 13080 aagttttcac ccaagaatct catcaccatg atatcaccac cctatttttg tcacagaatt 13140 tattccctgg aggaaaatca cgtaccgctt cgatcaacgg ccattacttt gtgttgttca 13200 aagacccgag gaaccaattg ggagtacgca tgcttgcaca acaagcgttt ccaggacagt 13260 tagattacgt gatggatgcg taccgacaag ccacacaaga acctcatggc tacttgttga 13320 tggattttca ccaaaaaaac cctgacgcct accgccttcg ttctcacatc ttacccaacc 13380 aatgtcccat gtacgtgtac amcccagcac ctcctaaagt ataaatagag agagaaaagg 13440 tgaatagagc acgagtaaag aaagccagac ccattgacga ccatgtcwck tccacggcaa 13500 caacaccaat ttgacatcca gcgtgaactc gcaagattag gagagatcca tttacgcacc 13560 ccaacagggg aaagctacaa ctactgcgga cctggtacga aacttaatca gagattaaac 13620 tcgaccgacc cgagcataag taatcctatc aacatcttgg atgccttatg ccaaaaacac 13680 gacattgcct actcaaagag taagaacctg tacgacaaac acgtggctga tggaaattta 13740 ctagacgcta tatcaagaat cccaaaaaac attcgacccg caagaacctc cttggtacgc 13800 tctttgattt ctatcaagaa acaactcgga atgggaaaaa aaaagaagaa aaagacaaag 13860 aagaagaaga aaaaaagtat aaatagaggc agaaggaaag ccacccgttt cagttgacga 13920 tggccaggac acgaggaaga ggtccacgtg gtggtgccac acgaggacgc cccatagcca 13980 gtggcagggc acgtggacgc cccacagcaa gcgcacgtgc acgctacaga gcagaagcac 14040 aattgaatcg acgccatggt ctctcacccc ccacaccacc rgaagggatt agcccccttt 14100 cctccacatc ctcctccacc tcctcatcct ctgcagcttc accattccac actattcccc 14160 gagacgagtt tggggtaccc ctcgagttcc catcaccccy atccctatca accctgtcac 14220 ccttggcacc cagtccaccc gtgagtacac ctcgacaaca gcgacgtacc ccaccatcgt 14280 ttacaccacg atcctcgatc tcgcgacgac gcagtgacac acccaaaaaa cggcgacgaa 14340 tctcggttcc ccggcgacga gcgggtagtg ccctgggacg tctcaccact aaaaagaaaa 14400 caccaccacg acgcaccaat ttgcttgagg ccttcagagc tgcagctggt acccctgctg 14460 gaagtcgaag tagtagtagt agtatctcac takcatcacc agggatgaga tcttcgttgg 14520 ggagcatacg cacccctcct csttcacrcc acgatcgtct cactcctaca argcgtcgac 14580 gaaygcgaac atcgacctcg agaacragtc ttgccccggc acctgcagtg ccatgggaca 14640 tcaccactaa aaggaaaccc cagtcgcgtc aacgtaccgc agccgccgac accctgcagg 14700 aagccgycgt taasccgtac cccaccycca ycaacccctc gaagtcgtgc ctcttcccgt 14760 ggtagtgcaa gaggaggtgc caaaaccacc aagaccacaa aaaagtgtgc yacccgcaag 14820 agtcgtggac aaaacggagr caccaccacc aagaccaaat gcgtcaccac ccgtcgtgtg 14880 gctggtcatg gaasacaaca aggtggaagg gtacaaccac tacccctctc agacgagtgt 14940 tggcaaatcc accaacaagg ccgkggacaa gcgtctcaag gaagaacacg atgggtgtga 15000 tggaaaaaaa ctataaatag caaagactat ccayacctaa tctcatttcg ccatgtctag 15060 ccgactgaga aggaacgmgc gyttccttga agtgctctcg cataccaaag ggaaagcgcg 15120 acaacgtctc ctggccaatg ctacaccgga acaaataaac acgttggggg aaattgccaa 15180 gaacctattg aaaggtaacc tccccatttc ccagactcaa aagaaaaaac taaagcccca 15240 cctgcaacga ctacgcaccc tggccaacaa gagaataccc aatggtaccc gaaaacgttc 15300 cgtcacaagt caacgtggtg gatttstcat ccccctctta cttggggcct tggctgccac 15360 agcagccaca cccgtgttga aaaaagtcat cgacaaaatc tgaaaagact ataaatagta 15420 gggtaacckt ttaccctctc cacagtcsca ctcaaccaca ttcaccatga ccacacaaaa 15480 aggaggagcc caccgcatgg ccatgatccc cgaatacatg stcaacatga ttatgaccaa 15540 gaaaaacgtc accacggccc ctcaattccg tatcatggca cgattggatg gggaaatgcg 15600 agctatcttg aawaacacct cgttaccgtt agacgcaaaa atacggcact acaatcgggt 15660 gttaarccaa tacctcaaat ggwtgcamca agtcaaagac gctggagcgc caagaacaat 15720 ggctagaccc gctamacccc tccctaacct tccttcacca ccttcccaag caaaacaccc 15780 agctcttcca tcacmagcca aagcgggcac ccccgcctcm atcacctccc accaacacac 15840 ccgaaaaggc catcaacggc ggcgcatacc aatgactwcc gataagacga caacaagcac 15900 acgtgaagag aaacacgtca attgggaccc cttcctccca gacatcaaat caccaccgca 15960 agaccaacac ccaggaagaa ccaacccttg ggamcctttt taaaaaaaaa gacacatgtg 16020 ttgttatgtg caacattctc tctttttaat aacaataaaa tgttttttac aaaaaaccat 16080 aacgtggtgt tcgtatgttc tttttttttt acacagtagt ctcaaaatgg tgtggaggtc 16140 tactatacac tctttgtttc tcctttagcc acttggcaaa cacatagact tcagctctag 16200 ggcaatgcac gggggtgggg tggtcaggtt ggtaaaagtg atacccacaa gtctttgcac 16260 taatgtccca taaaaagttc atatgaggcg taatggagtc ataataggcc cataatgctt 16320 cgtatttggg gcaaccatac agttccaaat tmacgtgggg aataccaagc tcttgcagca 16380 ccttgcgctc acagtctcct cccttgtacg ccacgatccc accttgacca tacaggtcat 16440 accactcctg gacgacacgg ttcagttccg tgtgyggaac gctcgatcct ggtgtaaggt 16500 caaagttcat tttcatgatg tgttgactag tgtaacgagc agatctctgg tcactggccg 16560 agagttcatt aaatgcgata gggaaggaga aatgtttacc caccacttcg tcgccgtgat 16620 ggcaaaacgc tgcttccttg caccaaaact ccttattcac tctaaagcca tcaaaatcaa 16680 gaataccctt gatattgtga agaacgcctt ccakggcagg accatcaggr gatgcaccag 16740 cagcagcatc agcagcagcg catggttcac tcygtctcca cttccttctt cttttccggc 16800 atcatttttc cctcaaccac tccgacactt cccaacataa caggaaaagg gagatgcgwa 16860 crctcacgaa aaaaccaaac ccaaacgaac accctcgggt aaaagaaaca agagcttcct 16920 tccacatcgg tggatagggc actatargaa aaaacaaaag cgaaacctcg ctatttatac 16980 actctcggac caatcagaaa cctagactcg gtaagaacca atcacagacc accatcgtgg 17040 cgcgaaaaca ttttaaacca atcagagaac agcaccacga atttctacca atagaaagcg 17100 ctccttacca tgacgtcatc cttttagaac agtataaaat agagaacgcc agctcacaca 17160 ctctcacaag tcaccatgaa caacaacatg gctgaccata tgacttgtat gatctgttgt 17220 gaaggaratg acgaactcat ggaactactc ccctgctgta agcaaccctg tcattacccc 17280 tgtttgtgga aatggataca cgctcaccta acaccacggg ctacctgtcc acactgtcga 17340 aaggratact acccatggaa ccaagaagtg gtcctgtgga tagccagtga tttcaccccc 17400 aagaacaaaa atcaccccgc tgaccaaatt gtcctcgaag aaaaacgaaa ggctcaatcg 17460 gccataaacc gctacaaaca attcatgaac atttaccccg ctcacctcaa ggaccccttc 17520 cacattgggg tgatgtgcga acaatgcaaa cacaaagcca cccgtaarac caacngcgag 17580 aacagacacg acatggaact ccccctccta ctcccccagc gccccgtctt gaccacccca 17640 aatgaaaacg aaaatataac ccagtatgga ttctggctgt ggctacacrt cgacaacaga 17700 tycacaacaa cgattaccat tggacaatcg aaaacgtcat tccaccccct ccccctgaag 17760 gtcacgttga acgagaaatc tacgaattgg gncgcgacga gtacatgcgt aatcttcgag 17820 aatcgctctc tcgtcgaagc actcttcccc cactagacta catccaggcc tatcgacgag 17880 catgcatkgc ctggtcctac aacgagaggg gagagtggaa ctgggaaagc gataaccagt 17940 acgataacga ccacccccca ccaccaccmc ccgtaggaca cgaactacga gctrtctacg 18000 aacgataccc tctcgattgg aatccttttg atcatacgct cgtcgttatc aaacamcaac 18060 aacaacaacg actacgtgag tgacgaaagc gatgattggg ttccttttga tggtcgccga 18120 aacatcaaca acaacaacta cgagagtgac gatagcgata cgaacatgat ctccgacctc 18180 gatgatgaaa gtgataatga cgatgamgaw gaagaagtca atcgagacgc acccacacca 18240 ccccctcctc ctcctctacc agtcatccaa ctcaaccctc caccagctca acccctagaa 18300 cggtctctcg atgattgcta cagagtccta ataagagctc tagaacaagc gctcccactg 18360 gtaaatagca accccctctc ggtcaacatc tccgaacgca tcctgaacgt cattcgaaga 18420 atgaacctac gacgaytraa cggcatgcaa acrgsctcac tggcaccacg tgtctttgct 18480 tctctacaat cctttgccta cttccggtac atgttgcggc acagggaaga actatacact 18540 tttgtacaag ccgctgaagc cgagaataac aggagtagct catcgcaacc acccccctcc 18600 caagatcaga ctaccaccac cacaggtaac ccaacactac cccaagaaca gtctgctacc 18660 acaggtaacc caacaccttc accaaatcaa tgacctaagg ctaatcatcc acgtagaagg 18720 cagacgcgaa ctcgaagtac ctgccattga cttttcgaac attctatggg aacgctaaga 18780 acactacgat agatacttga taaataacgt wctttttatg gacccttgta tccatgttgt 18840 ttctttaata aaatagattt tactctaaat atggtgtgga ctgtttacgt cacttccgcc 18900 ccatcaaatc ccaccaatcc catccaccac ccctcccctc caaagtccaa agyccaagtc 18960 caaagtccac ctgtgacgtc acttccgccc tatcaaatcc gaccaatcac agcacgccat 19020 tttcaacaac caatcagaac gcgccacgac cgcgcggccg ggggactgga atccacccta 19080 tatatagact acctttacta ct 19102 // ID DNA-TA-20_NV repbase; DNA; NEM; 874 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone DNA-TA-20_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TE2-1_NV; KW DNA-TA-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-874 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-874 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-20_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [2] (Consensus) XX CC TA target site duplications,. XX SQ Sequence 874 BP; 238 A; 176 C; 206 G; 254 T; 0 other; cagctatttc aataaacgtt gtccaagagc gctctgccgc acgcgcccat accgcgaggt 60 ggtatgggta atatatgttg taacaggttt tcagtaaata tgccgcagtc ttatagtgaa 120 gaccttcgct ggcgagttat ctggatggta cagtttcttg cattatctat cgaagacact 180 gcggcatttc tttctatgtg ccgcgtacaa ttgtaaaagg tatatctgca aaaataggga 240 cgacaacggc aacgcgaaag acgacggcag aaaacaattg agaattcaaa gagccagacg 300 tgaaatatac tctgaaatgg attctgtctg atacatttca gccgtttttc ttcaaacgac 360 aacgtgaaaa ctccaagttt catggtgtag cgaggacggg aacgtgtgcg ctgaaaacta 420 gactatcctt gttcgctatg ctagaaataa gattctaggt tttactatag ttttttgggg 480 gaatacataa acgagtgaat tttatctaaa ctagtttaaa attgagcgca aagtatgaaa 540 gctttttggg ttctccctgc agtcggtcgc cgtcgtcgtt gctatttcgt tcaggcactt 600 tgccaacagg ttttctttta gtgtaactac ggagtctccg tttgacacct cttacgggat 660 aggtgccaaa cctgctcttg tttccttgtt taaggacgcg cagatatata tttagaaaat 720 tatcagactg tactgccatt ctgatagcgt tcaacgaagt tcgtgtcggc ggtgaaggat 780 ggcagagctt gaaacaacat atattaccca tactacctcg cggtatgggc gcgtgcggca 840 gagcgctctt ggacaacgtt tattgaaata gctg 874 // ID DIRS-20_NV repbase; DNA; NEM; 1405 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-20_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1405 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1405 RA Kapitonov V.V. and Jurka J.; RT "DIRS-20_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 415-415 (2007). XX DR [2] (Consensus) XX SQ Sequence 1405 BP; 338 A; 375 C; 342 G; 350 T; 0 other; tcgaaagcgg acacagcgtc gagggagttc aaccctcgga cggaatggat gctacgcagg 60 gatgtcttca gggacataac actccgcttt tatgttcctc agatagatct attcgcttct 120 cgtctgaacc atcaggtgcc cttgtacgtg tcgaggtacc cggatcccgg ggcctcagca 180 gtggatgctt tccgactgaa ctggggtcag tggacgagct tcattcaccc accagtgata 240 ctccttcctc gtatcctgca gaaggtgcgc gaggacaggg ccacaactct cttagtggcc 300 tcggactgac cgggacagcc ctggtatcct cagattctgt caatgctaac aggggcaccc 360 taccgactcc ccaaaggcaa gacacttctg acactcccat tcgatctgga agctgtacac 420 ccactgtgcg aatccctcaa tctgactgca tggccactat cgggaatgca taccaaacta 480 taggctactc ggcagcagtg acagatattt tactggcttc ctggtctgag tcaaccaaga 540 agcgttacca gggtccctgg aaatgctggt cccagtggtg ttcttctaga ggtctgtgcc 600 cctttaatga agtccttttc tttttgacgg aagtattttc tgagagacct ctagaataca 660 ggacatggct ttttataagt cagccatatc acaaggacat ttacctatag accacataaa 720 gctaggagac ctaccagtag tttcccgctt catgaaaggg atatttagac tgaagcctcc 780 aaccccacgg cttagctcga cgtgggatgt taagcgcctt ctagaattct tggcaacctg 840 gaatcagcag tgtacgcttt ccctgaaaca gctgtccatt aagctggctg ccttgctggc 900 tttgacctca tctgcacggg cacatgaact ggtcaaacta gacctggact tcgggtctgt 960 caagaaggac tcttggactt ttacattggc agaacacaca aaggtgtctc gaccaggtca 1020 cccgcccagg cagatttact tccctgccta tccaagcaac cccaagattt gtgtggtagg 1080 cgcattgcaa aaattccgga tgaagactga gaagctcagg aaaccttcac atctcctgat 1140 atcctacgtc aggcctcaac ggcacatttc tagtcagaca ttggcaaggt ggctaaggac 1200 ctctatgcga cttgagggga ttgagtgcca gtttactggc cattctacga ggagtgcctc 1260 aacatctgca gcggccagag cagtgttccc cttggaggtc attttagagg ctgcagactg 1320 gtcgtcagca cagactttta ggaagttcta tttgagatcc cctgagaatg gacaattttt 1380 cagggctgtg ctggacacac tgtcc 1405 // ID DNA-6-7_NV repbase; DNA; NEM; 613 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-6-7_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 6-bp TSD; KW NVREP35; DNA-6-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-613 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-613 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-613 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 87-96% identical to the consensus. It was reported CC originally as the unclassified NVREP35 transposable element. XX SQ Sequence 613 BP; 181 A; 114 C; 120 G; 198 T; 0 other; cagggcttct ggaattacgc gcttgtgcgg aagcgcgtaa tttggctttt tccgcgtaat 60 ccgcgtaatc cacaaatttc cgcgtaatcc cgcgtaattt ggctaaattt tgaaagacaa 120 aacatttaat tgcacagctg atgtgttctt ttagggttct tacctctatt tctcgtaaaa 180 aaagagagat attcttcgta agagtgcgat atttcgaact gaatttcgaa aacaaataaa 240 atgactaggc gttctttgct aaaccgcgaa ggcctaggac taataataaa ataccttttt 300 taattggctg gtggctagga gccaatgaaa actcgcctaa gatattttca cgcaaaaaat 360 taaccttttc aagttatttc gtgctttcct tcggtacaaa atgtagtttg ggcgtaacag 420 ttgatattcc gtgtaattta gcgcgtaatt cagtaaagaa tcccgcaaaa ttttgatttt 480 taaagaaaaa tgtattgcaa aatcccgcgt aatttagcgc gtaatgattg attttccgcg 540 taatttagcg cgtaatttag caaagaatcc cgcgtaattt tgagtttttt tccgcgtaat 600 tccagaagcc ctg 613 // ID DNA-7-15_NV repbase; DNA; NEM; 317 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-7-15_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP51; DNA-7-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-317 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-317 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-317 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-15_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP51 unclassified CC DNA transposon [1,2]. XX SQ Sequence 317 BP; 72 A; 83 C; 68 G; 94 T; 0 other; cacgggctat aggataatct gactccgaaa tgaagtctaa tgtcttgtta gtgttgaata 60 aagcacgtat tcctacttta actggatgta ttcgccttgg tttcgctcct ccagcgagct 120 ctgtccctac gcgcttgtga cctttcaaac gacgcgctat gtaaccgccg ccgcctggta 180 aatgagtaac tcgaccccca gcggcgcgtt ttttctcttc ccgctggggg cgttcattta 240 ggtacaaata cgtgctttat tcaacactaa caagacatta gacttcattt cggagtcaga 300 ttatcctata gcccgtg 317 // ID DNA-TTAA-1_NV repbase; DNA; NEM; 3092 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TTAA TSD; KW NVREP26; DNA-TTAA-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3092 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3092 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3092 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-1_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 90-97% identical to the consensus. It was reported CC originally as the unclassified NVREP26 transposable element CC [1,2]. XX SQ Sequence 3092 BP; 993 A; 568 C; 552 G; 979 T; 0 other; acacgaaggc gcggtataaa agggcctaag ccccgccccc atttttcaaa tggagagaaa 60 gtccaacatg gcggccatta ccgttacgag cccagtcaat aaagaatgcc cccaaatcta 120 atgatttgat atccaacgaa taaaaaaatt cccaaatgaa agaaaagata tgtttgattt 180 gtacttcaag cctttcttgg cagcgagaaa tgcatatttg tcttagaatt cgtacattta 240 cggcgcgatt tcaaatctcc cgcctttccc ttcgacgcca tttttggtat gtataccttc 300 ccgactctcc tggggaagga tttggtgagc ttgggcccgc aatgaccaca gtcattgctt 360 agcagtctat cctaagggat tatgcgtgca atggggtaca aacagagcta aattttgcca 420 ttcttagcgt gtttagaaaa catgtttcgt ggagcgattt tgcctcattt cttcgcactt 480 ttcttggccg gtagcatgat tcgtatttca atcagacatt cggggaaata tgaagagcat 540 tgtactctgg aaagaagccc ctaaaatggg gagaagagga aaggaagaca ggaagaaaaa 600 agacattgca gaaaataatg tgtttttgta agttctgtac tgaaaaatag cacacaacaa 660 agcaggacat tagaattaaa cataagcagc aaacatcagg tataaagtca agatacatca 720 tatatatatt ttattattca taagtcactt tacagctgta gtgtaagagg acacttcagt 780 aaaacttatt ctagtgaaac cattatttct actttcttgt tgctgcaaca ggtgtaaaac 840 aaaaatgcaa agtgtgccta tctgctgttg tacatctgtt caagaattaa ccaaaaatcc 900 ataaagtgtt ttgacattta cctgagcagg aagaaaattt ggtgtggtgg gcaggtcagg 960 gaatgttgaa cccccagttg acttctactt tgacgagaaa gtcaatttgt ctttattatc 1020 tttttaccaa atttaatagt tgatcaatac atgttaccat gatcaggctt cggcaaatga 1080 ccccagtttc ataagatatt tcagcggtat ccagggagtg tgcaagtgaa actctgatat 1140 tacattatct agggtggtca ttaccttggg tcctttctct ggtgccatcc tgctgttagt 1200 accagacttc ttgatccaga acataaagaa aggctaagga aatttgtcaa cttaccctca 1260 ccctgtctgt catttataag tatactaaac agagtactag gtacacctgt ttgaataggg 1320 agcatagtgc agtcaatttg atttctagga aagcacttgg tcattagacc attgtgccct 1380 cgtgctaatt tatcagatgt agggttaaaa gtagggctta gtaccatccc aataaaatgc 1440 aaaacttact atttgtctgt acagaacaaa ggaagtggta tacaataaaa gaaaacattt 1500 gtttcaatat ttgtttttat agtgcataac tggctcacag aaactgtaca aaacaaggga 1560 gtggtataca atataaagaa aacatttgtt tcaatatttt ttatagtgca taactggctc 1620 acagaaacag cagataaccc tttgtacaat gtatcagctt atatacttac acatatatgt 1680 acaccaaacc actgaagggc tactaaagaa atgcctgata tccatctaag tgagattgag 1740 ccataattga gtctatcttt ctactttttg gatcagaatg cacctgtata gtattttgtt 1800 tttatcttgc aatctatgat gactacaaat aatgtagaaa taataacaat tgaattagct 1860 tttgtttcta tttgcccaaa accggtctgg atccttagtt ttataaaggg tttacccaaa 1920 catatgtttt atacttagtt aattataagt taattataca aaatagagac atgactttta 1980 ctgttttcat tcaatggata tcctccctgt atctacactt gcttttactg taagaatgag 2040 aagtcttgaa ctgaatggat aaaagagaaa gctttttggt ttattcaaaa gtataatcta 2100 taatgcagtt tataaaatat gactggttgc tttatacact tcactagcac atcaatcaat 2160 cttatagcaa caaaacatgt ttcctttaca aaggaatgtt tatgatttaa aatcacatgg 2220 aaaatgtaat acatgtctat gtatctgctt tttcttgagg aatatatctt gttgattatt 2280 cagatgtcac catgacttgc ttcttgggta tagctaggat gaaatcatat aattgattag 2340 aaattatata atagattcaa catgcaagtt tggcccccaa ttcattcaga caaactgttt 2400 agttaacatt actagaatac aaataatgga ctgatcccaa cgataaaaaa aacactacca 2460 tttattacat atttatactt gaattccaac ttatagtagc ttgtaaatag aattaaaact 2520 tcacacacca caaaacaatc ttgtcctagc tcgaggcgat gtaaaaataa aaacaaacaa 2580 gaggaaagca agatttgatc tacaaacaac atcttttcta tagaaggcct gcattacttc 2640 tatcggcagt aatgtggaca aagtcaagat gcattttcta gcaaaacaga gtttccccgc 2700 cactttaagt acctataagc ttatgatgac taatttaaat cctgttttct gagttttaaa 2760 gctatgaaaa gtaaatttta ggcataaaaa gctcaccttt tgtcgaggtt tgaaatcgtt 2820 gttttccgat catgcgtttg ctcctttttt gcataaatca cgttggtttc gtagctttac 2880 ttctactgag tttccttttt tacacattct atcggactag aaggtagagt tggcattttt 2940 atacatcagg aagcgctttg aaacctctcc cctctgtgtt ttgtacttga ctcgggccgc 3000 catcttgaat ttgatcctca ctccacggcg gttgattgac aaatgagccg atgcttccaa 3060 tggaagcacc cttttatacc gcgccttcgt gt 3092 // ID Gypsy-21-LTR_NV repbase; DNA; NEM; 95 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-21_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21-I_NV; KW Gypsy-21-LTR_NV; Gypsy-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-95 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-95 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-21_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 474-474 (2007). XX DR [2] (Consensus) XX SQ Sequence 95 BP; 31 A; 20 C; 16 G; 28 T; 0 other; tgtaatgtat gttaccatca ccaatgtatt gcgatgcatc ttgggaataa atcagttttt 60 gaattccaac atggcgacac gcacacaaca ttaca 95 // ID Harbinger-N15_NV repbase; DNA; NEM; 220 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP231; Harbinger-N15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-220 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 173-173 (2007). XX DR [1] (Consensus) XX CC Harbinger-N15_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N15_NV CC transposon is characterized by 34-bp TIRs and TWA target site CC duplications. XX SQ Sequence 220 BP; 75 A; 55 C; 47 G; 43 T; 0 other; ggggccgacc atttgacttt tgaggggggg gggggtggat gattttgaaa aaaatatcct 60 gcacggccaa aaaaatatcc tgcaccaatt ggtggacgaa aaaaatatcc tgcatcggta 120 aaaaaaaatt cttgcacgcc aaatgctttg aaaaaaaaaa tatcctgcgc acccaaaaac 180 gtcacacccc ccccccctca aaagtcaaat ggtcggcccc 220 // ID DNA-TA-4_NV repbase; DNA; NEM; 350 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-4_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-350 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-350 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-350 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 350 BP; 124 A; 62 C; 47 G; 117 T; 0 other; cactcttttt ttttataaga acctttttta taagaacgtc cagcctgaga tttcaccaaa 60 ttttaagaac atgctaagaa catgccgagg ctcagatagc agaaaaattt ttctttttta 120 gtcctgatgc gttctaaaat gcagaatcaa attgtgctca tagtaacaac cttattattg 180 ctattgatca ttagtgtaat tctcttccta ataattcatt gggtattata ttcttatata 240 cactaaaatt taagaacatc gttaagaaca tattcagcct taaaatgtcc caaaaataag 300 aacggcccag cctcaactga aaattagacg ttcttataaa aaaaagagtg 350 // ID hAT1-2_NV repbase; DNA; NEM; 2206 BP. XX AC . XX DT 06-APR-2008 (Rel. 13.04, Created) DT 06-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE hAT-type autonomous DNA transposon, hAT1 subgroup - consensus. XX KW hAT; DNA transposon; Transposable Element; hAT1 subgroup; KW NVREP212; hAT1-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1..251 1892..2206 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2206 RA Jurka J.; RT "A subgroup of hAT elements from starlet sea anemone genome."; RL Repbase Reports 8(4), 381-381 (2008). XX DR [2] (Consensus) XX CC Non-autonomous family derived from hAT1-2_NV was reported CC previously as NVREP212 [1]. XX FH Key Location/Qualifiers FT CDS 285..1802 FT /product="hAT1-2_NV_1p" FT /translation="MAEASAIDIDPAEPEVLNGVRNAEVQSLLDVLKAPRD FT GDLSRKRKIAVNQGGNRRGSRNKPTYYEPTKVSAKQRVEEFKGEDLIVRNN FT EVYCAACKEVVSVKMSIMKVHVKSKKHELNKEKLKKLGKREEDIVQALHKY FT DQAHHPKGETLSTSTRVFRIKVVQAFLKSGTPLNRVEFFREIFEEAGMSLP FT SSSNMRQLIPFILEEEYKSTTSMKGRRVWKKLTGRVMPRYNSTRWWSLWEC FT AKVVFEEWGHVPASHDEEFAKASRQKLSDALLHNPVQLRVEFAALMELEKF FT VKATYTLEGDGALVFIAFEKLEELGAFIHVQNFPTIANTLQQMFPMNVADQ FT RRWYQYAVRECLVPAFDYYSQTLVNDAVVAKSVRVFKAARLFNPKYVKVSR FT PNAADIDQLDEVPFLNNNEIQSLRTELPMYLVKAADIPDDFDPQADIWPWW FT KAVSQELLAWSAAVQRIALVQPSSAAAERVFSLLATMFGDQQHDALEDYIE FT AALMLRVNTR" XX SQ Sequence 2206 BP; 671 A; 414 C; 536 G; 585 T; 0 other; taggcctaga tacataattc cggatttttt taggattttt agagtcaaac gggattttta 60 gaaaatctaa agatttttag aaaattattt aaggttttag gaattttagg taaaattcct 120 accaaatact tatggacttt cgatagaaat gtgatttatt ccactaaacc gatcgtcaat 180 aacgttttct gatcatacaa aaagtaccgg tcagcggttt accccatatt cccagaatgc 240 cttgtttgtt tcactggaag gcctggaagc attgctagtt caaaatggca gaagcatcag 300 ccattgatat tgatccagcc gagcccgagg ttttaaacgg cgtaagaaat gcagaagtcc 360 agtctttatt ggatgttttg aaggctccaa gagatggcga cctatctagg aaaaggaaaa 420 ttgctgtgaa tcaaggtgga aaccgacgag ggtcaaggaa caaaccgact tactatgagc 480 caacaaaagt ttctgctaag caacgcgtcg aagagttcaa gggggaagac cttatcgtac 540 gcaataatga ggtttattgt gctgcttgca aggaagtggt gagtgttaaa atgtccatca 600 tgaaggttca tgttaagagc aaaaagcatg agcttaacaa ggaaaagtta aagaagctag 660 gcaagcgaga agaggacatt gtccaagcat tgcacaaata tgaccaggca caccatccaa 720 agggcgagac cctttcgaca tccacaaggg tatttcgcat caaagttgtt caagcattcc 780 taaaaagcgg cacacctcta aatcgcgttg agttctttag agaaatattc gaggaagcag 840 gaatgagtct tccatcatct tcgaatatgc gacagctgat tccattcatt ttagaagaag 900 agtacaagag tacaaccagc atgaaaggaa gacgtgtgtg gaagaaactc accgggaggg 960 ttatgccacg atacaactcg acccgatggt ggagtctgtg ggaatgcgcc aaggtggtat 1020 tcgaggagtg ggggcacgtc cctgcgtcac atgacgaaga gttcgcgaaa gcatcccggc 1080 agaagctatc cgatgcacta ctacacaatc cagttcagct aagggttgag tttgcagccc 1140 ttatggagct tgagaagttt gttaaagcga cctatacttt agagggagac ggcgctttgg 1200 ttttcattgc atttgagaag ttagaggagc taggtgcgtt tatccacgtg cagaactttc 1260 ctacaattgc aaacaccctt caacagatgt ttcctatgaa tgtcgccgat caacgcaggt 1320 ggtaccagta tgccgtgaga gagtgccttg tgccggcatt tgattactac tcccagacgt 1380 tggttaatga cgcagtggtg gcaaaatccg tccgggtatt taaagcagca cgacttttca 1440 acccaaagta tgtgaaagtg tctcgaccaa acgctgcaga catcgaccag ctggatgaag 1500 taccatttct gaacaacaac gagatccagt cgctaaggac ggagctgccg atgtacctcg 1560 tgaaagctgc agacatcccc gatgactttg accctcaggc agacatctgg ccatggtgga 1620 aagcagtaag tcaagaactc cttgcatggt ctgctgcagt ccaacgaatc gcgctcgtac 1680 agccatcatc tgcagctgct gagagagttt tttccctgtt ggccacgatg tttggggatc 1740 aacagcatga tgcgctggag gactatatcg aggcggcctt gatgctcagg gttaatactc 1800 gttaactttt gggacggtat gaagttgcga gttagttgca gattgttcgt tttgcaattg 1860 ttgtatatgc cacaagacac tgaaattgtg acaccagtta gaagtcagta tttagaagtg 1920 agtttagttt gtaaaacatg tgtaaatcgt ggaaagttat tgctttcgat gcgaataatg 1980 ctgaattgtg catttataca tgtacaataa ataaaaaaaa caaagataaa gatatatttt 2040 ttataattaa gggaggaatg gcatatttat gaaaaaaaag aaaattcgag atttttaggg 2100 gagaaatcgg gatttttaga gacaaattcg ggatttttag acattttggg gggaaattcc 2160 ggaaaaattt ttagaccatt tttcgggaat tatgtatcta ggccta 2206 // ID Kolobok1-2_NV repbase; DNA; NEM; 2694 BP. XX AC . XX DT 06-MAR-2008 (Rel. 13.03, Created) DT 10-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE Kolobok-type family. XX KW Kolobok; DNA transposon; Transposable Element; Kolobok1-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2694 RA Jurka J. and Bao W.; RT "A distinct subgroup of Kolobok-type DNA transposons."; RL Repbase Reports 8(3), 173-173 (2008). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(420..827,1125..1508,1442..2107) FT /product="Kolobok1-2_NV_1p" FT /translation="MPKNRSVRRPKRRFSGNQHTKLQETLPKIAKKDDVDE FT TRVDVNTSSRRSVSSKKLSKDVPKLSTSFQEQSGEPFITGYRLIDMEILSE FT ILYSLRCSECADSSLTLMENQLQRKGCASSLRLLCSSCGWKTEFFTSKKNG FT CVTVISMDNGKVLDTEALSQSCKQCQQHPNLDKESIAYKTWWAEHSFKCNA FT NYHGSAPGMESVGASRLFSRSIDKHKLRYSELYADGDSKSHTEVKHMYEDD FT NVVVEKKNALDTFKRGWEQHCGNCSCRKKECVGHVQKRMGTALRKLKKTNA FT GIGGKGKLTDAMIDKLQNYYGIAIRSNLDDLKGMKKAIYATLFHCASNDKV FT VLHDYCPDGPNSWCGYKRDSANKTKTFKHGSGLPKDIICMIWQRVPKEVFV FT ARLVLEFGLYDAVAHFNQGSETVVDLFRRLKIDAGKYTNSGCTALDLGRIY FT GAEYKERDIQKKRRKVLRGQRKRKEDKKQQQEGPRYCAGSF" XX SQ Sequence 2694 BP; 865 A; 455 C; 575 G; 799 T; 0 other; ttaaggcggt atgatactaa aaaaactaca agtttgaagt aaattggcaa aaaaaatttt 60 ccagttgatt tagcctagaa attatctctg ctttattcgt gattagatgt atttctggaa 120 aaaaacattt tcattccttt ttttgcgatt ttctgaaggt cgttccctgg ttgccagggg 180 caacgcattg ttttggcgtc ctttttccaa tgaaaacggg ccatagtaat cggaaaaaaa 240 tatttccatt gcatggactt cctgtgttat actgtataga ggtagactag gtcctaacct 300 cgttttggaa cacagttatt cacacatttt gcaagtattt acaatttctt ccaagtttct 360 cgatcgttat acgtttaata tcttctaaag tctctaaatc tcatcataag aagtctatta 420 tgcctaaaaa tcgaagtgtt agacgaccaa agagaagatt ctcgggcaat cagcacacaa 480 aattgcaaga aacgttgccg aaaatagcca agaaagacga tgtcgacgag acacgtgttg 540 atgtcaacac gtcctctagg cgatctgttt cgtctaaaaa actatctaaa gacgtcccaa 600 aattgtctac atctttccaa gaacagtcag gggaaccttt tatcactgga tacaggctca 660 ttgatatgga aatactcagt gagatattgt attctcttcg ctgcagtgag tgtgccgatt 720 ccagtcttac gttgatggaa aatcaacttc aaaggaaagg ctgtgcttcc agtcttaggc 780 tattgtgttc ttcgtgtggc tggaaaacag agtttttcac ttcgaaatag caagcgaaga 840 gttatgaagt aaacaggcgc ctggtttatt ccatgcgatc gcttggtaaa ggccacagtg 900 gagcaaaaag gttttgtacc ttgatgaaca tgccgccacc tccaaccgca cgagcatatt 960 ccaagaactc aaaaactatt agtaagcata ttaaagctat tgctaatgaa acaatgaaga 1020 gagcagccat tgaaattaaa gatcagaaag ctgctagtgc agatgatatt gtaaattgtg 1080 gggtatcatg tgatggtaca tggcaaaaaa gagggttttg ctaaaaaaat ggatgtgtca 1140 cagtcatttc catggataat ggaaaggtct tggacactga agccctgtcc cagtcatgca 1200 agcaatgtca gcagcatcca aatcttgaca aagagagtat tgcctacaaa acatggtggg 1260 cagagcacag cttcaagtgc aatgccaact accatggctc tgcccctggc atggagtcgg 1320 ttggagctag tcgcctgttc agccgctcca ttgataaaca caagctcaga tactctgaac 1380 tttatgctga tggtgattct aagagccata ctgaagttaa acatatgtat gaagatgata 1440 atgtagttgt agaaaaaaag aatgcgttgg acacgttcaa aagaggatgg gaacagcact 1500 gcggaaattg aaaaaaacaa atgcgggaat tggaggaaag ggaaagttga ctgatgccat 1560 gatagacaaa ctgcaaaact attatggcat tgccatacga tcaaatctcg atgacctaaa 1620 aggaatgaag aaagctattt atgccacctt atttcactgt gcatctaatg acaaggtagt 1680 tcttcatgac tattgtcctg atggaccaaa tagttggtgt ggttataaga gggacagtgc 1740 aaataagacc aagaccttca agcatggttc tggcttacct aaagacataa tatgcatgat 1800 ttggcagcgt gtgccgaaag aagtgttcgt ggctcgactt gtcctagaat ttggacttta 1860 tgatgcagtg gcacacttca atcaaggatc agagactgtt gtagatctct tcaggcgatt 1920 gaaaatagat gctggcaagt atactaattc aggttgcact gctttagact taggacgtat 1980 ttatggtgca gagtacaagg agagagacat acaaaagaaa agaagaaagg tgctcagagg 2040 tcaaaggaag aggaaggaag acaagaaaca gcagcaagaa ggaccaagat attgtgcagg 2100 atcattttag tgcattgatt tagctgcagg tgttgtaatt ataaggaatt atttatttca 2160 taatttaaaa tgcatttttc tcaaaatatt aattccgtta atgtatggct cagcgtaaca 2220 ctcactagtt cctgtgtttt taatattatt gcatgaaatt tggcaggaat aattattgat 2280 agtgtagtag tgtaatgaac ctcaaaaacc ttgaaatttt tacaatgctt agtaatatga 2340 aggcttttta ccaaagaatg ctggttaaaa ttataagctt tttgtttgtt tacttgataa 2400 ttttccattt atgtcaacta tatagcaatt ttaggttcat tacatagttt gaggtattag 2460 caatgaatat ccttagtttg gtttgtgttc caattatagt ttcagagcta gagctgttac 2520 cgtaagagca ttaaaatcat gtattttggg tgtggcttgg ttaccatagc aacagtaact 2580 gccaaaattg gtatcgaatg attagtctca atgaggttaa tgatatgtga aataataaaa 2640 ctgctaagtc ttttgcttaa aatttttgtt gtcttgggta tcataccccc ttaa 2694 // ID DNA-2-7_NV repbase; DNA; NEM; 675 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-2-7_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 2-bp TSD; KW NVREP363; DNA-2-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-675 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-675 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-675 RA Kapitonov V. and Jurka J.; RT "A family of DNA-2-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 90-94% identical to the consensus. It was reported CC originally as the unclassified NVREP363 DNA transposon [1,2]. It CC 66% identical to DNA-2-4_NV. XX SQ Sequence 675 BP; 203 A; 108 C; 133 G; 231 T; 0 other; ctcaggctaa ttaaggcttg actatgggct tatacgcgga acaaaatgat tttcttgaat 60 atctcgcgaa gtatacatgg tatagcaata aagcttggta tagtggtaga tcgtggtaac 120 ttacaacagt tgaaattgtt gttgccatgg aaacgcgttt aattgcataa atttgaattt 180 taattagcta gaatcattca agtaaaaatg gggaacattt aggcaaaaca atttggaaat 240 cttaaggcat atatttgttt attgacatta cacagatatg aaatagcctt tgcacctggt 300 ccagctatta attttagcga gatatagaat tttttatgtt accacggtaa ccgttgtcat 360 ggttacgggg tcgatggacc agatgcaaag gctatttatt atggggcttt tgactatgaa 420 taaatatatg tgcttagaac accaatttac actgcataag ttttccccat tttcgtttaa 480 agtttttagc taattaatat gcaaatatat gcacatttgc tgcttccatg gcaacagact 540 gtgcagatca tgtttttctc ctatggttat tcaccatgcc aaatttggtt gttgtaggtt 600 atcgcagtct tgtattttcg aaaaatgctt ggatatccgc gtataagccc atagtcaagc 660 cttaattagc ctgag 675 // ID Gypsy-54-LTR_NV repbase; DNA; NEM; 104 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-54_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54-I_NV; KW Gypsy-54-LTR_NV; Gypsy-54_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-104 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-104 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-54_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 544-544 (2007). XX DR [2] (Consensus) XX SQ Sequence 104 BP; 26 A; 26 C; 22 G; 30 T; 0 other; tgtctcgcta tacctatgtc acgtgtccgg gtactgtgtg taataaactc aacatggcgg 60 cattcaccat gcggtcgttt gtctgactcg taaacaacta aaca 104 // ID Gypsy-52-LTR_NV repbase; DNA; NEM; 181 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-52_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52-I_NV; KW Gypsy-52-LTR_NV; Gypsy-52_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-181 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-181 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-52_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 540-540 (2007). XX DR [2] (Consensus) XX SQ Sequence 181 BP; 46 A; 24 C; 58 G; 53 T; 0 other; tgtgaggtat cggaaatgca cgtgactcgg aaatgattgg gtaatgtaat ctgagcctgg 60 gcggcgcctg gggagttgag actagattta gtgcggttcg gttgtaaagc ttgaaaaaga 120 gaattatatc attacttgtc ctgaacgaag tcgtatttgt gatcggtttg ggtgggtaac 180 a 181 // ID Gypsy-35-LTR_NV repbase; DNA; NEM; 130 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-35_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35-I_NV; KW Gypsy-35-LTR_NV; Gypsy-35_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-130 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-130 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-35_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 502-502 (2007). XX DR [2] (Consensus) XX SQ Sequence 130 BP; 36 A; 32 C; 25 G; 37 T; 0 other; tgtgacaagt tgcgtgacag agcacgtgct cagaacgtga cccaggaccc atattagatt 60 gtgcaagact catggctcgt ttcaccgttg aataaacgtc tacaaaactt cttattatcc 120 tcttcttaca 130 // ID DNA-9-2_NV repbase; DNA; NEM; 329 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-329 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-329 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-329 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 329 BP; 100 A; 63 C; 78 G; 88 T; 0 other; gacagtgctg aataacgtat gcgcatgcgc gtgctctggc gaaaacaaac acaatcgtag 60 tgttgaatcg ttcgagtaaa ggtacgaaag gctgacttca gtcgctgttt tgactaactg 120 tacagcatta aaaccatact gtacaaaaga tgacagattt gtgtgataat gagggagtca 180 taaagaaaat tatagcctta ggtttggtct agttttctta gcattcgcca aaatgtgaca 240 gttcgccggt aaaaagccgc catttcaaaa caaaaaggct ggtttaaccg cgcggtactg 300 gaactagtct tgcgtttttc agcactggc 329 // ID TE-GAA-1_NV repbase; DNA; NEM; 594 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-GAA-1_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; GAA TSD; NVREP333; KW TE-GAA-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-594 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-594 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-594 RA Kapitonov V. and Jurka J.; RT "A family of TE-GAA-1_NV transposable elements from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 594 BP; 160 A; 94 C; 116 G; 224 T; 0 other; taaatgcttt ccaacgtaac aacgtgcagt tggaaagcgt tttcgttacg gttctgagta 60 tgtgttatca cattacgtga tcttttgttt aaatataaca actatttttt attttgtaag 120 attacgtaac tactttagca ctacatatcg tatatatacg atagagatat gataattatt 180 tcatctcgca tgttggacgc tagtaccact gtgtaaccaa acttcatggt atattagatt 240 aaggccttaa tcctcgaggc tatataatca acgcattcga tcgaggaata cgttcccggg 300 ttttttgcct atagggtttt atccgggttt tcgtatcggg cgtgtgattt tgaagttgta 360 ttttcataag attattgata tttttgaatt gtgtaattgc acttgcactt aagtaatatg 420 ttaggtatta taatttttaa gttaagaata ttttctgcat tgtatttata taccacgttt 480 gatttctaat aaaatgtgta gtggtaccag ttcgcaggca cccagcacga gtcacacaca 540 tatggtgttc tgttgttttt gcgccttagc gtgcggctac cgaagggtag taat 594 // ID DNA-11_NV repbase; DNA; NEM; 934 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-11_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-934 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-934 RA Kapitonov V. and Jurka J.; RT "DNA-11_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 384-384 (2008). XX DR [2] (Consensus) XX CC The genome contains ~100 copies of DNA-11_NV; they are only 2% CC divergent from CC the consensus sequence. DNA-11_NV are not flanked by target-site CC duplications. CC It is likely that DNA-11_NV belongs to a novel superfamily of DNA CC transposons. XX SQ Sequence 934 BP; 273 A; 210 C; 179 G; 272 T; 0 other; cattcccaga aataagagac aacatggccg ccacgcatgc gtaatagtgc acatacaatg 60 tcaaaatggc tgccatttat tataaggaaa tgtggggaga catcacaatt tatcaaattt 120 tctcgtttca gagattttgg gctcacgatg caggactcga aaaaaaaccc ttgccattcg 180 agtgatacac tttccgttca aacgatgcca gagaaagccc tataattgtt ccttggacat 240 tgcacttttg ttcgcttgag agcatacaat cctccataca ttctctgtaa tttcattgaa 300 atcgggcata aaagtagtcg tttaaaaggt agaactgttc gccgcatcac aggtgcagga 360 ctcgaaattg gtaaatcgac tatccttcca tcaaattggc caataaaata ggcagtagcg 420 ccttccaatc ttgttcccga agaaataaca tttgatgtag ttatgcctag ttcaggaacc 480 attattgttg tctttaagat acagactgaa gcaaggaaaa cggtgcgctc cgcaagaaca 540 acttctctcc gttcgtccgt tctccatttt gtttttaaac ggccccacgg ctttctggga 600 tagacacagg ggaaccataa agcctttcta aaatacattt ttttttaaat ttgcgcatat 660 aatgttttcc aacctcagca agactgccgc acttccatta tcattggacg tatcaaatca 720 gagatgcccc ttgcacgttt aaataccgct aatactactt ttatttggaa ttttagtcaa 780 cctgattaaa aacttctagt gtaacaacaa aagggaagcc cctgtgctgg ccggaatctc 840 gtttttattt gtgataccgc tgttattcct cgcgggccta gcaaaatgtg agcccagaga 900 aaccgctggc taatgtccct tatttctggg aatg 934 // ID TE-15_NV repbase; DNA; NEM; 965 BP. XX AC . XX DT 14-MAR-2011 (Rel. 16.03, Created) DT 14-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-15_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP89; TE-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-965 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-965 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-965 RA Kapitonov V. and Jurka J.; RT "A family of TE-15_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 965 BP; 274 A; 223 C; 174 G; 294 T; 0 other; ttttaagtcg tggatagcga agctattcag gactttttgc ggttagcggg gttgtgtcac 60 tcgcgctaat cgtcgactca agtgtaaccc atagccaatc ataactcttc taatatcaca 120 actcttggcc aatcaaagca aacgttttag cgaaaaagcc cgcgaattgt cagcggtttt 180 ccaaaccatg tcaaaaaaaa acatggcggc cgtagttgaa ttctttgaag gtggtgatgg 240 ttaagactat gatttaacgt cattcctgcc tttcttgcca ataataaatc gagccacatt 300 cgataaatag ctatctgaat gaaaggtttc gcttcaaagt ccgttcgtta tcagttcaac 360 tttcacgata tatcatgtgg tcaacacact tacgaaacgc cactggtaag ccatttccac 420 ttcccctcta ctactgctgg ctgtgcacca aattctttgt ttatttcttg catgcatgct 480 tgctgaatta gctcccacac attcttgctc ttataattta agcttcggaa tttatccgca 540 cttcgctacg agtagcattg tttccaatgt ctccatgaat aacatttcta gactgaactt 600 cgtctgccaa gagcaggaat cagtttttta aatgtctgta agcaaaatca cccaaggagg 660 gctagagggc ccctttccat caatggtatc tgggtcgact ggttgtcccc agggaatcaa 720 tcagatgggc atagacttac ctgaagcagt tattccaaca tcacagtagt accattgttt 780 acacttgtct aagacaaaat accctatgta taaataaaac cacataaagc caagaaattt 840 attggtttgg tccatactct acataccatt ttaccctaag tgggttaaaa tgcaccaaaa 900 ccaagctttt gtcccaaatt accattttat tatccacgac ttggcaaggg ccttgccttt 960 tgatt 965 // ID DNA-5-16_NV repbase; DNA; NEM; 173 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-16_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-173 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-173 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-173 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-16_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 173 BP; 56 A; 34 C; 43 G; 40 T; 0 other; cagggttcaa aataattttt ttaaatctgc tagattttgc cggctttgtg gattttggtg 60 ggaaaaaaag cctgcatact caaaatatga gaggggaata cagaaaaaaa gagccggcaa 120 agaccagaaa acagccggct atcgccggca gccggccgct attttgaacc ctg 173 // ID Gypsy-13-I_NV repbase; DNA; NEM; 4309 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-13_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13-I_NV; KW Gypsy-13-LTR_NV; Gypsy-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4309 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4309 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-13_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 457-457 (2007). XX DR [2] (Consensus) XX SQ Sequence 4309 BP; 1319 A; 1176 C; 893 G; 921 T; 0 other; tggtgtcaga agcaaactga aggaaaatca ctctcaaaca taccaggtcg gtattttacg 60 agaaatctag caagtttaca caaggaaaat ggccgaactc actggactca ctagccctcg 120 tatggactgg aatgcaaccg atcttcaaca agcgctaaaa aagttcaagg caaccgtcga 180 attgtacttt tctggcccgc ttaagtccaa atcggaggaa gaaaaggtca gttatctgtt 240 gatatggacg ggagaagaag gaattgaatt agtttctacg tggtcgctaa cctcagacga 300 gaagaaaaag ctgtcaactt actgggagaa gtttgaagaa tacgtcgccc ccaagagcaa 360 ttttcgctta gcacgattta aactacgcac tctgaagcaa aaggacgatg aaccagtgga 420 ttcatttata aagaaagtaa gattgctagc cagcgaatgc aggtatgata atgtagacga 480 acacattatt gacgctctaa ttttcgggtc tcgccgccca cgtgtccagg ctaaactcct 540 cgagttagac aaaactctaa cgctcgctaa ggcaatagac atagccagga ctgaggaagc 600 cacttcggct cagttacaag atattagagg cacaaacact atacctgtac acgcaacaac 660 ccacaaaagc ccttcttcac atcccaagac acactcacgt gaaaataaac aaatacaaac 720 ttgtgggaac tgtggcacta gccataatgt gacacaaaaa tccctgtgcc ccgcaaacgg 780 aacaaaatgc agcaactgtg ggaaaccaaa ccactgggcc aaggtttgcc gttccaccaa 840 accccaaggt cccaccccga ggggaagagg caggcgggga aaccggaaca aatcaaagca 900 acagataaac accctcagca atgagaatgc tagcactgca cctgagcccc tagattcccc 960 acagttatat tttcactctc tgaccattga tagtatgtct cgacagatca ctcaagcgct 1020 cgtcaacata caggttaact cgagtaacgg gacactacca ctattatgca agattgacac 1080 tggtgctgaa ggaaatgtga tcccattaag caactacaag cacatctatc cagagtcact 1140 ctgcgacata gacggcaagc ccctcagctt agccccatca gatacaagga taacagcata 1200 tggaggccat gaagtacaac actacggtac ctgcaacctc actttactac ataacggtca 1260 gtccagccct catgaatttc atgttgtaaa cacgacagga cctacaatcc taggactacc 1320 cacatgtact gcaatgaagc ttgtaaccct taaccacagt ctaagcaaag accaggctga 1380 gccagccgaa atacgaccag ctcaagtacc caaggatgac cctgaggcaa aggcagctct 1440 actaagacag tatgctgact gcttcgaagg catcggatgc ttcagcggag agttccatat 1500 cacacttgac cctacagtac ccgctgtggt tcacccgcca cgacgagtcc ctgaagcact 1560 tcaggagcct ctgcgcaagg agttggaatc cctcgtacag caaggaatca tcaccaaggt 1620 tgatgaaccc actgactggg tcaactcgct agtctgttcc acaaagcgga atggctccat 1680 acgactctgc cttgatccaa aggacctcaa ctgcgccatc aaacgtccac atcatcgtac 1740 acccactctt gatgaagtct tatcaaagct aagtggatcc gagtacttct ccatagttga 1800 cgcccgcagc ggttattgga acataaagct tgaccaggaa agctcactct atacaacatt 1860 caactctccc catggaagat tcagattcct acgactaccc tttggtctga tttgtgctca 1920 ggacatcttc caaaagaagg tcgatgaaac ctttggtgac ttacctgggg tgacaggcat 1980 cacagacgac atagttgttt acggacgcaa ccgtaaggag catgacaata acctgaaagc 2040 agtaatggag cgtgcccgtg aaactggtct gaaattcaat gctgacaaat gcaaaattgc 2100 cagcaaggaa cttgtcttct tcggacacac cctaagtgca gatggtctga aacttgaccc 2160 tgctaaggtt gaagccatca acaacatgga tccttcaacg agcctcacag atctccaagt 2220 cttcctaggt atgacgcaat accttagccg tttcataccc aacctcgctt caacagcagc 2280 ggtcctctgg gacttgacaa ggaaaagtag tcaattccag tggtgcccag aacaccagaa 2340 agctgtagat gacatcaaga aactcatcac atcgccagcc tcgctgcagt atttcgacag 2400 caccaagcct gtcgtaatcc aggtggatgc atctcaacgt ggcctcggcg cgacactcat 2460 ccaagataaa ggccctgtgg agtacagaag taagctactc actgaaaccg agaggaggta 2520 ctccaacata gaaagggaaa tgcttgcagt cgtccatggt ctcgagaaat tccactacta 2580 cgcttatgga cgccacgtcc aggtccacac ggaccacaag ccactggagg caatattcaa 2640 aaagcatctg gccagcgcgc caccccgcat tgccaggatg atgctgcgga tacagaaata 2700 cgacatcgac attcgatatg tcccagggaa ggacataccc ctggccgacg ccctctcacg 2760 acttaaccca agtcccggtg acactatcgc tggacttgat gtctctatac atgagctaca 2820 cttgcacctc aatgctagcc ctactaggat aacgcagatc caagaggaga cgaggaagga 2880 cacaacactt cactcacttc gtgccgtcat cgcccaaggt tggccaaaca aaagagctga 2940 atgccctgag ttactacacc catactggaa ctatcgtgac gaacttactg tcgccgatgg 3000 attggtcctg aagggtaccc gaattgtaat tccaaagacc ctgcaaccag atgttctaca 3060 gcagctacac tatgcacacc agggtgcgga aaaatgcaag ctcagagcca agggatcagt 3120 cttttgggcg aacatcaatg ccgacatcga caacatggtc aagagttgtg ctccctgtca 3180 gcataatcag tccatgaaca ctaaagaacc gctaatgcct catgatgttc caccaaggcc 3240 ctggcacacc ctagcatctg acttgttctc ctggaacggt tcaccatact tactactctc 3300 tgattactac agtaagttcc caattgtgcg caagctaact aacatccaat catctactgt 3360 catcgctcac ctcaaaggaa tatttgagga acatggcata ccagacaaac ttgtcacagg 3420 acatgacacc cagtttacgt ctgctctatt caaggttttc agcagcacct atggatttat 3480 tcatacaact acaagcccat actacaagga ggctaatggc ttcatagaga gaaatgtgca 3540 aactgtcaag gatctccttc aaaagtgcaa ggaatcaggg caagacccac atctagccat 3600 gctgtgcctg agaacaaccc ctttgggtca caccctgcca tcaccagcag agttgctaaa 3660 ttccagaata tatcagtcta acctgccagc tacttccagg catgcactac tgaacaaacc 3720 tgactatgat gccaatgtca agctgcaagc cagacaagac cgacagaaat catattacga 3780 caggacttcc aagtgtctac agcctgtcta ccctcaggac gctgtcagag tcttcaaccc 3840 cctcaactcc aaatgggagc caggaatagt tcgagccgct gcgccaaccc cacgctcgca 3900 cattgtggac atggccaatg gcagtactct caccagaaac cgcagacaca ttcgtcccac 3960 aggtgaaaaa ctaagcttga ataatacctc agctactgat gactacgagc ctgtagcaga 4020 accagcacct aacggcaacc aacccccaac agagccaagg acgtctacac ctggtacccc 4080 tgcgaagtcc acacctaccc aaagtggtcc accattacgc agatcaacac ggacagtgaa 4140 gcccccagac agactgaact tgtagcattt gctacacaaa cattagatat tgaactatgt 4200 tattattagt actgcaaagt tctttttttt tttttacacc cctaattgga cactaccagt 4260 cacatttgta ctcatgtaat ttttcagctt ttcagcttag agaagggga 4309 // ID BEL-10-LTR_NV repbase; DNA; NEM; 193 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR of the BEL-10_NV autonomous LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP460; KW BEL-10_NV; BEL-10-I_NV; BEL-10-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-193 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-193 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-193 RA Kapitonov V. and Jurka J.; RT "A family of BEL-10_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Originally was reported as the unclassified NVREP460 transposable CC element [1,2]. XX SQ Sequence 193 BP; 53 A; 41 C; 34 G; 65 T; 0 other; tgtctgaact catatataac tgacattcat agattgacat tatcgttatt attgttattg 60 ggttccctgt ggacatgatg tcacgtgatt gatgagccca cgagggattt gttcagttca 120 ttaaaaaccc attcagacaa gcactctttc cgtagtttta atcgtagttt taatccccca 180 acacgccgat aca 193 // ID Gypsy-9-LTR_NV repbase; DNA; NEM; 160 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-9_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9-I_NV; KW Gypsy-9-LTR_NV; Gypsy-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-160 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-160 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-9_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 583-583 (2007). XX DR [2] (Consensus) XX SQ Sequence 160 BP; 40 A; 34 C; 37 G; 49 T; 0 other; tgttataata ttagtttgtt actaccctcc ccccttagga gcccatcgta ccgcgggctc 60 acgcgttgtg ttgaacagtc acatggagtt tcgcatggag tttgtgtcag agaattaaga 120 gattaaatgt gttgaattgg ccgacaaccg tcttataaca 160 // ID DIRS-45_NV repbase; DNA; NEM; 2648 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-45_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-45_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2648 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2648 RA Kapitonov V.V. and Jurka J.; RT "DIRS-45_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 442-442 (2007). XX DR [2] (Consensus) XX SQ Sequence 2648 BP; 730 A; 616 C; 653 G; 648 T; 1 other; tttattgttc tttaaagaag ttgaagaaag acttccaaac ttgctgagtg acttcagcgt 60 tgaagaggaa agcaatctac tacgcgcaaa ggccggtctc agaatttaac aagcattagg 120 ctctcgaaat gctagaaaca ttgcagaatg tggcaagaga caaagaagga gagaagtcca 180 gacggtgcgg gttaagatta ccccaaagag tacttccgct ctttaatgct gaggctcctt 240 ggtgataaag accatcaagc ggccttcgat gcggtcgcca aagtggagaa agcaatgggg 300 aaacgcaatt ggcaaaggtt taggattctt ttcgtacagg accatccaga aaacaggcaa 360 ggagtaacta gagccctggc gcggctcgat gctactattg caacaagaca gggcatttca 420 tatctaggtg tatggagcgg aggagggcgc aacgccggac cccataccag tcccccagag 480 agggcccaca gacttccaga ttaacgccga acgatgatat gtatctaata tacttacttc 540 aatcgtgtgt taattaataa agcaaaacaa aataaaagaa aaattatttt tggtcttgtt 600 tgggtgggta taacaccatt aacaccattt agccaaggtt tactggtctc agaatttttc 660 atatagtctc agatttttga agccacggag agatgggagt tttgaaaaat ggctacaaaa 720 aagctcccgg tcatattggg tcaggactgc cgtctctctg ctggctggta cggggttttc 780 tgccccattt attcatagaa gaaccagatc agtggataat attgaaggaa accccttgca 840 agccagcaga gagatggctg ctgacactca gatggagcaa acagttaccg gacccagtac 900 cttagtagaa aaaaagggag tcgaagactt ggtttttcga tacccgaata gcttcgtggc 960 cggagaattg catgagcatt ttgggcactg ggaaaaaatt gctaaaaaca ccccacctga 1020 acgccgtgac gaggtcttgc aatggatctc gggaaaagta tctattttcc cgtattttcg 1080 acacttyatt aaagggaaaa gctattattt ggaccgcctc ccgcacagaa tattctcgaa 1140 caacgtcaac tgtctcaacg tcaataatct ccaaggatgc ctttcaaact gttctcgacg 1200 acaaatccgg ctacgatcac ctcttcccaa ccgaggccag tcgccgcttc tttggcatcc 1260 agtggggcgg gtgatacttt gtatacaata caatccgttt ggttggaact caccatatgt 1320 gtaccacacc acgatacttt tggcatctaa ttacttcaga tcactcggga tcccgtgtct 1380 actgtacatc gatgacagac acaatggcaa attgcagaat ccgccttgat cgggagcgta 1440 cgagagcctg ggtactaatc aacaacgaga cttggcggtg gctcagtcgg cgattttcct 1500 agtggccttc cacttgctac ggcttggata tttcttggga ctatcgaagt ccatcttgac 1560 gcccagaaag gtagtccctt acctgggttt ccttgccgat tcaggcagag aggtctttca 1620 tcttaaagag gataaaaaga cgaagtttct tgagttaatc aaagacacgc tctccaaacg 1680 ctgggtgtca gttaagactc tgcaacgaat tacgggaaag tgcgtatcat tctcactggt 1740 tgtcccggct gctagacttt ttaccaggga aatgaatgcg gcgattgcgt caggcttacg 1800 taagatgaag ccagttccgg ttcaaggcgc cctgagagag gaaatagcca ctggttattc 1860 cttgaatgat gggatgaacc actgccatgg cgtgatgaga ggcaggtgca actggcgtcg 1920 gcacctctct ctctggttgg ggtggagtcg tcttattact tacccctctc ctggagacgt 1980 ccgactactg gacagcggag tggagaaatg cccctcgaca ttgcaaccaa ggaagctaga 2040 gcggtcaatc atgttgtgcg cgcatttagc agtcatttga gaaacgcacg tgttggcatg 2100 ttggtggata accaagcggt cgtctatgct tggagtaacc aagggagccg tagccacgcc 2160 ctcaacgtgg ctcttaaaga actgttcttc tcgacaatcg aattaaatgt acagctccgc 2220 tatgttccga ctctcatcaa tccagctgac cccccatcgc gtagattgtc agcaggggat 2280 cgcaaactag catctagagt gtggaagctg gtacaacaag agacatcgac ctacactcct 2340 gctagattct aacaccatga cggaaaatgc ggggaaacca tcccgcactt cacaccatac 2400 acgttccggg ttcactcgga gtaaacttgt ttgcgtagga catgacttgg tcctcgaaga 2460 gatgaagcgc ccttacgttt ttcctccgag tacgttgata ggcccagtgc tgaagttcct 2520 tataatcgac ataggccccc aacggtcgaa ggaaatgcaa agtggcagag agagatgctt 2580 cagctttact ctacccttca aagacaggct ggacagaggg actgcggcga gtctgggctt 2640 ttagaatt 2648 // ID piggyBac-N6_NV repbase; DNA; NEM; 1489 BP. XX AC . XX DT 28-MAR-2011 (Rel. 16.03, Created) DT 28-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE piggyBac-N6_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TTAA TSD; KW NVREP437; piggyBac-N6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1001 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1001 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1489 RA Kapitonov V. and Jurka J.; RT "A family of piggyBac-N6_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~98% identical to the consensus. XX SQ Sequence 1489 BP; 449 A; 285 C; 282 G; 473 T; 0 other; ccctttcacg cccaagtttt tttgactgac gcacacaaaa tgacaccagg tcttcagttt 60 ttatagattt tctctttttc cttagaattt catgggctga catagtaaga acaaatattg 120 cccacataat tattgatcgg aataaagtac tggttttcca aatattgtat tgcaacaatt 180 tttataagca ggcaaagaca aacttttttg aatttagcgc aatttaaccg cgtgctcgtc 240 atttgttagt tccagtttat gcatgttttc agataaacta catcaaatta acttcaaaga 300 ttcagagtta actctttagg gaagcatatc caagtattat acatagctat ttttcaggtt 360 taagcgagct ggttgtgata gtcatgtcag caccgtttct acacaataca gcatcaacat 420 ggcggcaata aaagcacggc ttgcatggtc atttcatttc taaattttag cggctttatt 480 tcatggattg aacaaaactc aactgtccat ttttgctcat gattgtctaa ttgattgaca 540 attggccata atctgtgaat aaatcaagta tagcacaaca acacgaggat ttgagaacat 600 catcgagcgg aacgagtggt gactattgaa caaattcaag atggtattgt gaagaatttt 660 ctgcattgtt gttcagatgc ggccaaaata ggcttgcaag aaagtattat ttgctgctat 720 tggttttgca atatccaact ggacgagaaa caagtctttt tcactcaaat atttgcgaat 780 tgttggcaat agtccgatgc catgagtact tacaaaaata ccgagatggt ggctgaattt 840 attcaccgct agttcctgca tcgttcgctg ttgctctcaa accactcaga atctttctct 900 tcgtttcctt tttgccattt agaagcgcct caaacaagtt tgttcgattg acaagaaatt 960 caatcaattc agaatgatga aaatataaaa aaaaacaaag ttcaaagtca ttatttggat 1020 gattcttcgg tccgatgaat ggagtagctt cttgttcctc aatggcagta ccagttctgt 1080 accaaagttg gtctttgggt cgcaaaatac cgacattttt ctgctagaaa ttagcccacg 1140 gccatcgttg tttaccgatt gtgaatctgt ctctcccagg ccgtaaaact cttttaaatc 1200 gctatcaaaa tcacccaaaa tatcatgagt caagtccatg atctaaaggc aaggtccgtg 1260 gtcgtggatg gatttcgaac gcgcgaaaaa gttttaactt tggataaaaa tttcatgacg 1320 aacggttcgt tgtactgact tgagctgtaa gagagaaacg tgcagaattt catgctctat 1380 cgattccacg tgttaggttt ccatataagg cagtcctttt gtctttttgt ccaatgacaa 1440 agaggcatac agcaaaatac ggaaaattcc gtatctaggc gcgaaaggg 1489 // ID DNA-TTAA-9_NV repbase; DNA; NEM; 1253 BP. XX AC . XX DT 28-MAR-2011 (Rel. 16.03, Created) DT 28-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-9_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP395; KW DNA-TTAA-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 324-1253 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 324-1253 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1253 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-9_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1253 BP; 407 A; 243 C; 244 G; 358 T; 1 other; ggcggtacga aaggcaaaca aggcaaatac gcgctcaaat taccctaaat tacaaattac 60 atttatgagg ccgcttttgc ataaaaatga tcgaaacttt cacaacaaac agatacatta 120 tccaacttca tgacaaaatt gtcattttag tcatatctaa aagaaatttg aggaattcgg 180 ctaattagcg caggctgtca attaagccga aaatgccttt tttcgctcta gagcgaacgc 240 gtttcaatgt aacccaatat aaattcagta tataatacct aaggataaaa taaaactttt 300 catcagagtg cgccaaaaaa aattgaaatg cgagaaatta gttgcgaaaa atcaaaattc 360 aagtttcgct cgagattatt ccgcgttgaa aaataaatga tggcgcactc tgatgaaaag 420 tttctaaatt gtgtctagtt tttgattgcc aagtttcagt tcgatcgaat aaatcctgat 480 acagatagag cgtattttgt gagtctatgt gtctttgtct cgagttgaat ccaggcaatt 540 taagcgcatt tcttcgccac attccttgtc aaacctgagc ctgctgtatc gaaaacagcg 600 ggaaaacatt caaaatacac gctttataag gctaaaatga ccatatatga agctctattt 660 ttcccgcgaa accaatcaca tgccgttctg gagacgccgc atagcaactg tcacagagaa 720 caatagagtc cagcgctcgg gtcatgaccc ggagagcttt atcgcctcgc agatttgttc 780 gaatgcagtt tctgctagca waatgtgaaa caaaatttgt tgtttatatt caacagcttc 840 aaaattaatt tatactcccc agacatagta aagttctaag agaacaggga aggatcgaga 900 agatcgaacg cactgttgtt ttgcgcgagc ggcgagtggc acagcagtaa tatgtgaaat 960 cggagagctt ctgatgacaa aacttcaatc atttcctggg aatcgtgact ttggaaaggg 1020 gatttggtca atatgtgtca aactagctgc atgggtccac tttgatggcc attgttttcg 1080 aagcttgagt ataaagtatt ggtgcgaaac tttccttcgc aacgcaactt tgatttagaa 1140 tatctcgaaa acgaaaagca ctaagacgct caaattttca ggacttcata ttaatcttat 1200 atgcaatcga ctgttaaaat ttaaaggcaa gttgtctttc ctttcgtacc gcc 1253 // ID DNA-9-21_NV repbase; DNA; NEM; 1053 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-21_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP32; DNA-9-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1053 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1053 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1053 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-21_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, was reported as the NVREP32 unclassified DNA CC transposon [1,2]. XX SQ Sequence 1053 BP; 334 A; 230 C; 207 G; 282 T; 0 other; tagcctgagt atcaggcgat tttatttttc aaaagtcgga gaggaaaaat aaaagtacgc 60 ctgacacaaa tactagacgc gacgcctgcc gccccttttc aggccactgt caaaatacgt 120 cggctgtcaa ttttccaatg actcgcgtgg tggcacaatc aaatgcccaa atcaaattat 180 aaacagcatt tatgtaaaac aaaactacat tggtgttata tgcaagggta ataattttag 240 taacgacgaa ccccggtgag ggtaacttta tgctaaatga tttgaaacgc aaagatagtt 300 cacggctcag gagatttacg atttaagtat atgactgcag atccacacat cactaaatta 360 ctacaggata ttcacatcac caatttacta caggcttttt cgtctaaata gacaaaccgc 420 tgcttgaaca caaatgccat tatttgataa gctcactcga tcaacaactc gcgggaagtg 480 ccgcaaacaa tcccaagcat tcttcgtgct ctcacagaca aatttctcga atattcggcg 540 cctggtctgt ctaaaaattt gatagctact actaatgatg tccgtagtat taagcagctt 600 ctatgacatc cagcgccttt gatataacta gtagatcttc gcttcgaaaa acgataccaa 660 tgagaaataa acacacgcaa tgaccggcct tggcaaaaca tttgaacatc taacctgagt 720 atcaggcgga atttttccga agaaaatgaa gagaggaaaa tatatttttt taaatgttat 780 agaaaacgat ttctctgatt ctgctaacgc aaggtcaaaa gcacttttgg agtccgccat 840 tactctgaga acgagcagtc gacgggttag ggtactatat atagctgaac caatcagcgc 900 gtcccattcg agtacccttt gtttttttga ccaatcagga gccatgccgg aatccggcat 960 gagaacatgc gatttgaaca gtacttgtat caggcccttg tcttgtttct cgccggcgcg 1020 atagaaacat aggagggcct gatactcagg tta 1053 // ID Crack-2_NV repbase; DNA; NEM; 3743 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Crack-2_NV non-LTR retrotransposon - consensus. XX KW Crack; Non-LTR Retrotransposon; Transposable Element; NVREP468; KW Crack-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 3446-3743 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 3446-3743 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3743 RA Kapitonov V. and Jurka J.; RT "A family of Crack-2_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~99% identical to the consensus. Its 3'-terminal part CC was reported originally as the unclassified NVREP468 transposable CC element [1,2]. XX FH Key Location/Qualifiers FT CDS 341..3553 FT /product="Crack-2_NV_1p" FT /note="AP endonuclease and RT domains." FT /translation="MIWHWKLLTFTFLCLVLRGINDSHDNSSVLLRASNDL FT IINDTPQFHFRRLHKSTPSSSTAPARVCLDLLRSASIALLLVCLSNDVQLN FT PGPQATNHATNVHLPCIPLSKNGVRICHWNARSFNNDKYEQIKEILTHPRT FT EIDVMIITETWLNSSHTNEEYGIPGYHIERKDRTRKERGGVMMYVSHAMAY FT TRLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDAKLEGLIE FT KMYITNKEALLLGDFNINFLKQQNHKHRLIKFLTSLGFTQTINEVTRPESQ FT ACLDHVYTNQPQCITKTKVCNIGLSDHLPVCVVRRYKKKQDRAADKNHVYI FT SYRDCKKLDEEAFLKDLDEAPWSVLDTFDDLDDAVDYWNRTFLSIADIHAP FT LIRKRVKKQSQPQWMTPELYAAIRDRDRLLERARKCNSDSDAWETFKSARN FT NVFQSIREAKRNHFNKSFEQSSTAKEFWRHLKIAIGQTSKPSPSQLRGNAS FT NTPTITDPREIANAFNEFFVSVAATYRNSNVNMRTLSTSDFEKLKGFVDSK FT IPSGTKFEIPKVMQEFVQGYLLQLQTCKATGLDGISARLLRAAAPAIAPSL FT TKIINQSIKTGRFPARWKEAKVCPIYKAGDRLSVDNYRPISILPALSKVIE FT RHIHVCLYEYLNSHKLLSSNQSGFRPYHSCDTALVKLIDYLIGNMDQGLIS FT GLNLIDYRKAFDLVDHDTLIKKLSIYGVSGKSLNWFKSYLEDRKQKVTISG FT QLSDSQPITAGVPQGSILGPLMFILFINDLPLEVSNSALEIYADDTTQVAS FT GSSVSEVESILTEELKKVNGWANENKMVLNQSKTKSMLICSKPKLRKLAGK FT DLTVSTENGQLECVNEVKLLGIRLDNSLTWDNHLKYIHNKISKRLGLLKRT FT KKFLSLKARTLFYHSLIQPILDYGAIVWGSTKKQHIDDMVKFQKRCARVIL FT DKKWDAPSKPLFEELNIVPFDKRIIYLQLVLLFKAMNNMTPCYIRDMFVKC FT SDVHNKNTKNAANHNLVLPKARTTLAKNSFKFVAAKRWNALPLEIKEAKSI FT TAFSAKLREYITTL" XX SQ Sequence 3743 BP; 1184 A; 834 C; 755 G; 970 T; 0 other; ggcagtcacg cgcaaaccgg ctcctgaaaa tcagctttat ttttgcgctt tccattgacg 60 gccaaatctg aaaagttgtg gatttcttaa taaggtcatc gtgctcaaga agccagcggc 120 tggacttaca cgattcagga tttgagaagt tttacaagtt cttttaaaag tttctccgtt 180 gaaagttgta gtttttcgcg gctcgcgcag ctttcggctt gtcttcgtcg gttcgcgcgg 240 acaaacacag attcgtcagg gacaaccgcc aaccgactcc atactcgagc tgaccgttga 300 attctgactg cacgcgctgt tcttagtgag agcgctcacg atgatttggc attggaagct 360 cctcactttt acattcctgt gtttggtgct gcgagggata aatgacagtc atgacaatag 420 ctctgtgtta ctccgagctt caaatgacct aattataaat gatacaccgc aatttcactt 480 cagacgacta cacaaatcta ctccatcgtc gtccactgcc ccggctcgtg tttgtttaga 540 cttacttaga agcgcctcca ttgcactact actggtctgc ctttcaaatg acgtccagct 600 taatccaggt ccacaagcta caaatcacgc tactaacgtc catctgccat gcattccact 660 gtccaaaaat ggtgtaagaa tatgtcattg gaacgcgagg agcttcaata atgataaata 720 cgagcaaata aaagaaatcc ttacacaccc tcgtacggag attgatgtga tgattattac 780 cgagacatgg ctgaattcct cacacacgaa cgaagaatat gggatccctg gatatcatat 840 tgagcggaaa gatagaacta gaaaggaaag gggaggagta atgatgtacg tatctcacgc 900 tatggcttat acccgtttac caactctaga atcaagtgac acagagctcc tttgcactca 960 agtgataccg tgcaagtcca actgcccaat tattattgcc ggagtctatc gtgtgccgga 1020 ttcaactgct gaaatggatg ctaagctaga aggtctcata gaaaaaatgt acatcaccaa 1080 caaagaagcg ctactactgg gggatttcaa catcaacttc ctcaaacagc aaaaccacaa 1140 gcatcgtcta atcaagttcc tcaccagcct tggtttcact caaaccatca atgaagtgac 1200 tcgtccagag agccaggctt gcttggatca cgtttacacc aaccagccac agtgcatcac 1260 aaagaccaag gtatgcaaca tcggactatc agatcattta ccagtgtgcg ttgtgcgcag 1320 atacaaaaag aaacaagatc gcgcagcaga taaaaaccat gtctatattt cctaccgtga 1380 ctgcaagaag ctggatgagg aggccttcct aaaagacctt gatgaggccc cgtggagtgt 1440 gctggacacc tttgatgacc ttgatgacgc tgtggattat tggaatcgga ctttcctaag 1500 tatcgctgat atacatgctc ctcttattag aaagcgtgta aagaaacaaa gccaaccaca 1560 gtggatgacg cctgaactct acgcagccat tagagatcgc gacaggctgc tagagagagc 1620 ccgaaagtgt aatagtgact cagatgcgtg ggaaactttt aaatcagctc gaaataacgt 1680 ttttcaatcc atccgagaag ctaaacgaaa tcatttcaac aagtcatttg aacagagttc 1740 aacggcaaag gaattctgga gacatctaaa aattgctatc gggcagacaa gtaaaccgtc 1800 accttcgcaa ctaagaggca atgcaagcaa cacacccacc atcacagatc cacgtgaaat 1860 agctaatgca tttaacgagt tttttgtttc cgttgctgcc acctacagaa atagcaatgt 1920 caacatgaga acgctgtcaa cttcagattt cgaaaagtta aaagggtttg ttgatagcaa 1980 aatcccgagt ggcactaaat ttgaaatacc caaagtcatg caagaatttg tgcaaggtta 2040 tcttcttcaa ctacaaacgt gtaaagccac aggtttggac ggtataagtg ctcgcctttt 2100 aagggctgca gccccagcca tagctccatc gttgactaag atcatcaacc aaagtataaa 2160 aactggacga ttccctgcgc gctggaaaga ggcgaaagtc tgtccaatat ataaagctgg 2220 agaccgcctg agtgttgata actaccgacc catcagtatt ttacctgccc tgtccaaagt 2280 tattgaaaga cacatacacg tttgcttata tgaataccta aacagccaca agctattaag 2340 tagtaaccag tcaggtttcc gtccctatca ctcgtgcgat actgccctag taaagttgat 2400 tgattatctc attggaaata tggatcaggg actaatatct ggcttgaacc tcatagacta 2460 ccgaaaggcg tttgatttag tagaccatga cacgcttatt aagaagctct ccatatatgg 2520 cgtctctgga aagtcactaa attggttcaa gtcttatcta gaagaccgaa aacagaaagt 2580 aacaataagt ggtcagctat cagattcgca gcccattact gcaggcgttc cccagggctc 2640 gattttaggt cccttaatgt ttatcctgtt tattaatgac ttaccacttg aagtctccaa 2700 cagcgcactc gagatatatg cagatgatac aacacaagtc gcaagtggaa gtagcgttag 2760 tgaggttgag tctattctta ctgaagagct aaaaaaggtg aatggatggg cgaatgaaaa 2820 caaaatggtt ttgaaccaaa gcaaaaccaa atcaatgctt atctgtagca agccaaagtt 2880 gcgcaaattg gcaggaaagg atttgacagt cagcacagaa aatggccagc ttgaatgtgt 2940 caatgaagtt aaactgcttg gcataagatt agacaactcc ttaacctggg acaaccacct 3000 caagtacatt cacaataaga tctccaagcg actaggcttg ttaaaaagga caaagaaatt 3060 cctgtcactt aaagcaagaa ccctgttcta ccattcgctc atacagccaa tattagacta 3120 tggtgctatc gtctggggct cgaccaaaaa gcaacacatc gacgatatgg tcaagttcca 3180 gaaacgatgt gcgcgggtta tcctcgataa gaaatgggat gcaccttcaa aaccactttt 3240 tgaagaacta aatattgtcc ccttcgacaa aagaataatc tacctacaac ttgttttgct 3300 ctttaaggca atgaacaata tgaccccatg ctatatcaga gatatgttcg ttaagtgtag 3360 tgatgtacat aacaagaaca ctaaaaatgc agcaaaccat aacttagtac ttccaaaggc 3420 tcggactaca ttagcaaaaa acagctttaa gtttgtagca gctaaaaggt ggaatgcatt 3480 gccactagaa atcaaagaag ccaagtcaat caccgccttc tccgcaaaac taagagaata 3540 catcacaact ctgtaaataa gtttataaat cagcaaagga ttgttattgt aaatagtttc 3600 gtcaaagatt ttgctgtaaa cagatttgta aatagctttt atttattttg tttctgttga 3660 gggccatgcg tacattatca ttgtgatatt aagtgaatcc ctcattaaaa aaggcatcta 3720 tctatctatc tatctatcta tct 3743 // ID Copia-4-LTR_NV repbase; DNA; NEM; 168 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Copia-4_NV autonomous LTR DE Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4-I_NV; KW Copia-4-LTR_NV; Copia-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-168 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-168 RA Kapitonov V.V. and Jurka J.; RT "Copia-4_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 385-385 (2007). XX DR [2] (Consensus) XX SQ Sequence 168 BP; 42 A; 36 C; 38 G; 52 T; 0 other; tgttagagtg tgatctcatg ggatgggatc cctgtgtatg attatacaaa taaaagatcc 60 cggatcttct tcgcgattcg ggtgctaacc aagatggcgt gtctttatgt gtctttgtgt 120 aatccacgat agttttcctc caccatgagc gctgcaaaca atccaaca 168 // ID DNA-5_NV repbase; DNA; NEM; 479 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-5_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-479 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-479 RA Kapitonov V. and Jurka J.; RT "DNA-5_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 405-405 (2008). XX DR [2] (Consensus) XX CC Target site duplications are not clear: could be CTGG or CCTGG. XX SQ Sequence 479 BP; 149 A; 94 C; 98 G; 138 T; 0 other; ctggggctcg tttctcgaaa cacccgagaa ttctcgggcc cgaaaacgat ttattcctta 60 aatttgaaaa gctggctaat tcctataaaa tttatggtat ctaaatgtgt tgaaatatcg 120 tcaaacatcg tattttacca caaagattca tgtgaaggat gattctcttt atagatttat 180 agattttgat ctttcccgaa cttctcgggc ccgaaattca catggcttaa atattaagaa 240 agttctcggg acctcgcagt cacccgagac ttttcgggta actttttggc ttcagcaaaa 300 cttcgaaaat agccctattg agcgtaatca tttggaatac gaaccaagag gaagttcaaa 360 ctgttctaaa acatgaaagc ggttctccaa aaggaaaaca tgcgaaattt tgggcaaaaa 420 tgcaaaataa agttttcggg cccgagaatt ctcgggtgtt tcgagaaacg ggcgcctgg 479 // ID DNA-7-7_NV repbase; DNA; NEM; 480 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-7_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-480 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-480 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-480 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 480 BP; 121 A; 118 C; 100 G; 141 T; 0 other; caggggctca taagtagggg caatcaactt ccccatgttc tggtactata taggtgtcac 60 ggcgtttcct aggatcaggc tatttttaga cgcgcggatg agccaatcag attcaacctt 120 tgtgttgacg ttttggctga gctcaactgc acgcgcagtc tcagacaaaa agctatgttc 180 tctcttcggt actttgactt tttgttgctc tcttctttaa tatgaatcca accctaccta 240 tgactttgaa ttctagcttg caattctttt ggtaaacaaa caaaaccgac ggatgataga 300 taaaaatata ttcttcctaa ctgcaatttg cgcgtgcagc ctcacgtcac tcgcgcgcgc 360 gaccaacgtc aaagtagctg attggcccgt tcgtgcgcgc gcgtctaaaa atagcctgat 420 cctaggaaac gctgtgacat ttatataata cagatgattg cccctactta tgagcccctg 480 // ID BEL-11-LTR_NV repbase; DNA; NEM; 444 BP. XX AC . XX DT 21-MAR-2011 (Rel. 16.03, Created) DT 21-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR of the BEL-11_NV autonomous LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP254; KW BEL-11_NV; BEL-11-I_NV; BEL-11-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-444 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-444 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-444 RA Kapitonov V. and Jurka J.; RT "A family of BEL-10_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (21-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 444 BP; 149 A; 48 C; 112 G; 135 T; 0 other; tgtcggggat taagagttta ttagtcttac gtgacgcgag aaggaaatta cgttaggtgt 60 taatgtccta tcttatcagg aaattaagta gtgatttaat cttgtaaacg tgaatagcac 120 gatgaatcgt agtaagaaag gaatgtaaac tatttagtaa atatccgttt gtgggtagat 180 gaaagaaagc gctgtattat ccattgattg taagggcgta aaattagggt ataaataggg 240 agaacattgt atagtttagt tattgaacgt attgatggta ttgatcgtgt tgatagtatt 300 ggattgaatt gattgtaaaa cgttgatcgt tgagagttgt attgcttgta cgtagcatga 360 agtgctagta aacgcaaacg caaacgcaaa cgcaaaaagg tatcgaagga aattgattgc 420 acggggaaac gaatttccac gaca 444 // ID DNA-3-7_NV repbase; DNA; NEM; 2361 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3-7_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3-7_NV; NVREP117. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2361 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2361 RA Kapitonov V. and Jurka J.; RT "DNA-3-7_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 397-397 (2008). XX DR [2] (Consensus) XX CC DNA-3-7_NV elements are flanked by 3-bp targets site CC duplications. CC The consensus sequence contains long TIRs. Termini of DNA-3-7_NV CC differs CC from elements that belong to the Harbinger and En/Spm CC superfamilies, which CC are also flanked by 3-bp TSDs. It is likely that DNA-3-7_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-3-3_NV, CC DNA-3-4_NV, DNA-3-5_NV and DNA3-6_NV. In addition to 3-bp TSDs, CC all these elements CC have the 5'-TAG and CTA-3' termini. XX SQ Sequence 2361 BP; 750 A; 424 C; 495 G; 692 T; 0 other; tagtccggtc gcttagtgtt tcaatctata catagcggac aaaagcacca aacttggcac 60 aaagatagcc aagaggatgc taattaatat tgagaccggt gcccaccggt accacttgag 120 gatttcgtgt aataacggaa taaaaattag aaaaaagcgt ccatcacggg cttcctgtgg 180 tgaaatttaa aagaccttgt atttccaaaa ctaaggcgaa atatctgatt gttttattct 240 agtaggggaa atataacgct atttgttaat atttcaagat aaaactgtcg tcggctgcat 300 taaaacgctt tatctaagag aaaaagtttt caaggctaga cccaatcccc ctcacggtta 360 tccaagatgg cggcttatat tggcatagta tacgctgtaa gtacctcata aaatcgcgta 420 ttttaggtga aaaaaaggct catactttat gtatcaagga cttacaatgt caataaccta 480 ctaaatatga acttttgtct tgaatttaaa tgtatttctt ctaaatctgc gattaatcgc 540 aattatcggg tattttgacg ttggctaaaa agaggtagag atggatttaa tagggggctt 600 tgtaaatgta tgtcaactag acaccacaga acaacgagat gctttagata tgcctcctca 660 atcaaagtaa ttagtttgtg aatcttttct tgagaatatt aaaggattta gatgttctgc 720 agaagaaaca tctgtagaaa ctctttgtcg caaatagcgc aaaatggcac aggaattatc 780 acaaatttgc ggtattaatg ctcgaaagcc tttaagaacg aaaaaaggtg actagaagag 840 gaactgcgaa aaaaaaacag tgcttatttc tccctacgtg tgcattatag tgacgaggtt 900 gaacgtatcg catgctttta acaggatagc aaccaacctc caacgaatcg ccgcagcaat 960 agaggactat gttattaact taaagatgtc ttaatgatga cctcagggat ggaaaaagcc 1020 gtggagcata agtaaaggaa aggtctccag gaagcgagag aggatgataa aaaaagtgta 1080 gagcttttgt caggcttata gaatataata tattatcaga atatataagt ggaagctgtt 1140 gaaaatggta cgtacctttt ttgtgatgtc caagctccac aatgcgcatg agacacgctt 1200 gggagatttc gggaatgaga aatcctttaa ccgattttta ctaaaggaca gagttttaga 1260 ggctttttct aaggcgcacg atcagtgatc ggcggaccgt tattgtaata aagggaaaaa 1320 agtcattctg aaataaactg aaagagactt ttcagaatga tgcgcgtacg ctagcttgtg 1380 tgcagggtcc gctgggattt cttttccaaa cagaagattt ttccttcgac ggtgctataa 1440 acaagtgtac aaaaactcta gtgtcaacgg tactagcgtc aaccttagga ggacacgttt 1500 aggcccaaac ctgacgtaag ccagaattat tctatgtaag ttataaacga tcagatggtt 1560 ttgagcgcca tatccgtaaa cgccagccac cactgccgat ctatatactg gccgctttgg 1620 cccgtaacta gcatggggta gagcgaggct ctcgcctcgg aaacaattgt gataatttga 1680 ttttaaaaat aacatagggc cgtaatggaa agataaacaa atgatccgag ttgtcatggt 1740 atattttatc aacgcacaac aggctatgaa aaatctccct catcggtagc tgattttttc 1800 ctggtgacgg gcctattaat tacagccgcg ctggttgaat caaagctctg taacccttaa 1860 tataatgctt agacagctca ttgaaagaaa atttctggtg aaattcatgt gcaccaccta 1920 ttgtgcttat ttgatggacg gaaatcagtc atattattat tatatttgta tgttagcaag 1980 agggatgtaa aaaaggccgc gcggagcctg ggttccagta gatttccttc ttcttcaaat 2040 gtagcttttt atagctattt atacgttttt ttgttcggaa ttcgatagag tacagcttaa 2100 atgatagaaa tcgttttcaa atatgtgcat ttttatcttt ttttgcctca tgaaaaggta 2160 tgaaaatctc accacagggt acccgcaaca ccagatttct aaaaaaaaaa attgctcttt 2220 atctatggat ccgctaatgg taccggtggg caccggtctc aatattaatt accatctcat 2280 aggctataat tataccaagt ttggtgcttt tgtccgctgt gtatagattg agctcttttt 2340 gtgcgctaag cgacccgact a 2361 // ID BEL-3-I_NV repbase; DNA; NEM; 5456 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone BEL-3_NV autonomous DE LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-3-I_NV; KW BEL-3-LTR_NV; BEL-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5456 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5456 RA Kapitonov V.V. and Jurka J.; RT "BEL-3_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 370-370 (2007). XX DR [2] (Consensus) XX SQ Sequence 5456 BP; 1699 A; 1219 C; 1406 G; 1132 T; 0 other; caaagtggcg accacgaagg gacacacggc ttaaacagca agaacctagc ggataagaac 60 ggatttgtca agatggagaa gctaactaag gagttagaag cgaagcttaa aacgttgaga 120 tttcgagtgc tgaaaacaaa cgatgtcctg acaaaggata aacaagcctt ggagcgacat 180 tacaactcta tcacgaacgg gattaatgcg gtgagtgata tcaaagagca gctagaagaa 240 aagaaattcg cgaagggcga gagcgaggaa gaaataggac aatggggcga aagcgtagag 300 aaggagttag aggacgcaga ttccgctaac gcaaaacttc aggctgccat acaatatgcg 360 caaaaagaag aagaagacaa gagatgccac gagagccatc ttaagcagct gaagtatcag 420 caggaactac ttcaacaaaa ggcaacattt gagaaggatc aaaacaccac ttcgagcatg 480 gatcactcag ctagcaacaa cagtgctacg aacactaaac ttccgaaatt gaccatcacg 540 aagtttaatg gaaagtcgga gaattggctg tcgttctggg gaaagtttag ctgtgaggtt 600 gacgccacaa acgcatcccc agtaacgaaa tttgcctacc tcaaagagta tcttatacac 660 gaaatcagac aagatattga tggattgccg ttcactgctg agggctatga aaaggctaaa 720 accattctaa aggaagagta cgggaactcc agcgatatta taaatatcta tatcaaaaac 780 attatggatt tgccggtcat aacaggcaca agcccacgaa aagtgaaaga cttttataaa 840 acactgcgat ttaatgtgca gagcttggaa acactgggac ggttgcacga cgttcgagga 900 aatgttcgtg gcacgctcga caagttgaag gggattaagt ccgatctggt gcggggctgt 960 gacggatggc gcgattgggg gttcaatgat ctattacaac aacttaagcg ctggacagag 1020 attaaccctg ttgaaagtaa ctttgaggat aaaaccaagt ctaacaattc tcaacaagcg 1080 cgatcatcta ggctatatca aacaagtacc gttaacagtt ctgaagatca acgggccgtg 1140 aataacctta catgcgttta ttgtggcggt gctcacaaag gggttgattg tgcaaaggtt 1200 accgacataa aggaacggaa acggatactc gtcaaagaga aactgtgttt taattgcacc 1260 aagggaaaac atcgtgctga agaatgcaaa agcaagtcaa actgttttaa gtgcaaacag 1320 cgccaccaca cgtctatctg cgattcggat gtaaagtcca acagcaaccc actacttgtc 1380 accgcaggag tccccgttgg tcaagttgta tatccagtgg tcattgtgga tgtcgaagga 1440 attaaatgcc gagcgttact ggacacgggt gccgggagtt cgtacgcatc agccgcgctg 1500 cttgatcgac tcaaaaaacg gcaagtcaca cgggaagtac ggaaaataga catgatgctt 1560 ggaagcacaa cacgtgaagt tgaactagca aacattacaa ttaaagcggt cggcggaagt 1620 gactatgaaa tgggtgtcga ggtgaccaaa gtaaacaaag gagaactttt gtttatcgat 1680 aatcccaact acaataagct gattggagaa catgcgcatt taaatcaagt caatgttcaa 1740 gacacaagta caaaggacaa attacccatt catattattc ttggggctag cgaatacgct 1800 aaagtcaaaa cagaaactgc accaaagatt ggaatgccgg ggcaaccggt cgcagaactt 1860 actagatttg gatggactat aatatctcct ggaaaagaac ctatcgatat tgacatgttg 1920 gcatgtcaaa ctacgcaagt tgactacgaa gagttatgca agcttgacat tttgggactc 1980 aaggatacgc ctacaaacag tcaagacaca gtgtatcaag agttcaaaga acagttagcg 2040 agagatgaaa acggctgtta tgaaactgga ctcccatgga aaggcgatca cccgccactg 2100 cctagcaaca aggcaggaag tttacagcga ctggctagtt taacaaagaa gctcgagcgg 2160 caagatctca cagcaaagta cgcagagata atagaagaac aaattaccga aggaatcgta 2220 gaggccgccg aaggaccgag cataggcagg gaattctata tccctcacaa acccgtctta 2280 cgtactcaag ctgaaagcag taaattacgt atcgtctacg acgcgtcagc taaggaacac 2340 agggaggcgc catcacttaa tgactgtcta cacaaaggac cgccattaca gaacaagatt 2400 tgggacgttc tagttcgtgg gaggttcaac actgttgcga taaccggtga tctacagaaa 2460 gcattcttac aagtacgcgt gagagaatgc gaccgtgatg caatgcgatt tcattggcgt 2520 acaaatgaac actctccagt acaaacacta agattcacga gggcattgtt tggtctcgcg 2580 ccatctccct ttttgctggg gggagtaatc gaggctcatt tggatacctg ggaggacaaa 2640 gaaccggaag tggtctcgag gatcagaaag gaactttacg ttgatgattt aatttccggc 2700 gcaagcaccg tgaaagaagc gagggaactc aaggagaaag ctacacagat atttaaagat 2760 gctggtttca aactacacaa gtggcactcc aacgccaagg agctcgagtc tgaaggaccc 2820 gcgagcgagg attcaactta cgccaaacaa gagctaggag taccagtcaa cgaggaatgc 2880 agcttactcg ggcttggctg gcaaaccgga gaagacaagc tgagcgtgac aataccgcaa 2940 gggaactttg cgccgacaaa gcgagggatt ttagcgaagc tcgctaaagt ttatgatccc 3000 ctgggacttt tatcgcccac cactcttagc ggtaaattgg tttatcgttc cgtatgcgac 3060 gccaagatgg cttgggatgc accgatctcg gatgaattga agaaagtatg gtctaagtgg 3120 gaaaactctc ttccccagag agttaaaagt gccaaggtcg ctagtgactc accgtgaagt 3180 aatcaagagc atagaactgc actcgtttgg agacgcttca gcgcaaggtg tctctgcttg 3240 tgtttacgcc gtcgtcacgc aagagtctgg tgttaatcaa ggtctggtgg cagctaaagc 3300 aagactggcc aagcaaggtc ttacaatacc acgcttggag ttagtggctg gccatatggc 3360 cgttaactta atcaacaatg tcaagggaac tcttgatgga cttccggtca gcggtctgca 3420 ctgctggctc gacagtacag ttgcacttta ctggataaac aaccaaggcg actacaagca 3480 gtttgtgtcc aaccgagtac acaagataaa cagtcaccaa gatgtcacgt ggcatcacgt 3540 gccaaccaaa gacaatcccg ctgatctcgg aagccgaggg gggagcgttg tgaatgctga 3600 catgtggtgg aagggtccgg agtggctgtc agaacccgga tgctggcctg aaggcatagt 3660 actcgaacag tcagtagaaa gcaaagcgga agctaagctt gttagacaag tactgtcgtt 3720 ggctgtggcg gagcgcaacg aaatcgacga gctcctcgag aaatacccgc tacacaaagc 3780 tgtgaggata tgctgctgga tgcgcagatt tgcgtacaac tgtcaaagtc gcaagaaagg 3840 tgtcaagaaa agaactgggc ccttactaac agaggaaaca gagattcaga ggtgcttctg 3900 gatcaagcaa gcccagaaca gctgtgatct gtcagacgat cgcatcgcgc tcaacctaca 3960 actcaacgga gacggtctac tcgagtgccg agggcgagtc cagggccagt atccagtcta 4020 cctaccacac gtacatatat acactcagcg catagtagag gaggcgcatt tgcgcactct 4080 ccacggggga gtgggactca ctatggcaaa agtacgcgaa gacttctggg tcccgaggtt 4140 gcgacagctg gtgcgaaagg tgcgcaagaa atgccatggc tgtaagcgct ttcaagcagt 4200 ggcatactcg accccgccac ccgcagacct tcctgttaca aggacgcaag gtaccagcgc 4260 ctaccaagtc atcggcgtag acttcgctgg gccaatcaaa taccgtgttg ccagacagaa 4320 agaagaaaag gcgtatgtac tactgtacac ctgcagcctt acgagaggaa tctaccttga 4380 cctcctacca agcctagaga ctccagactg ccttcatagt ctgaagcagt tcatcgcacg 4440 ccgggggagg ccagatcgca tctactcaga caacggacga acgtttgtgg gggcggagaa 4500 gtggatcaag caggttatgc aggatgagcg cctacaagac tctctctcag tcaaccagat 4560 aagatggcag ttcaacttga gtcgtgcgcc ctggtgggga ggccagtttg aacgaatgat 4620 aggtctcgtc aaagcaagcc tacacaagtc tatcggccat gggatgttgt attggaagga 4680 gctacaagag atcctgctag atatggaaat cacactaaac aacaggccgc cgagttatat 4740 agaggacgac gtgcagctcc cacttctaac gccacactcg cttctcttta tcaagagcaa 4800 caccttacca gagatacaag cgcatcacat acaagacaca gatctgcgca agcgcgccaa 4860 acatctcatt aagtgtaaag acgcggtctg gaagagatgg acagatgagt atctgcgcgg 4920 tcttcgtgag cgtcaccgtg caaaggccgg agcaccggac accaagccta caatcggcga 4980 agtggttatc gttaaatccg aggagaagaa tcgcggcaaa tggcagttgg gaattgtgag 5040 ttccttaatt actagcaagg acggcgaggt gcgaggggcg aagcttcgtg ctgggaagtc 5100 atacatcgaa cgccctgtac aactcctgta tccgctagaa ctgaaggtcg atgatgtcgt 5160 gcgacctcaa cctgatgaga gactccggcc caacgctgca gagtttaggc cacggagaga 5220 tgccgcagct gccgctagac tacgcatgca aggcattgcg gacgacgcag aaaacctatg 5280 atcgggagac gaaccgtaca tttgtgtaca atacgaacac taagcgttta tacaactata 5340 gagttttgtt atacatagag acactcaaag gaacattgag acattactag aattcaacat 5400 gctattccaa tctcctcagt taacatatat cttgctcaag atatatgggg ggagtg 5456 // ID DNA-9-23A_NV repbase; DNA; NEM; 198 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-23A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW DNA-9-23A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-198 RA Kapitonov V. and Jurka J.; RT "A subfamily of DNA-9-23A_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-FEB-2011). XX DR [1] (Consensus) XX SQ Sequence 198 BP; 47 A; 49 C; 52 G; 50 T; 0 other; tagcctactt gtaggcgttg gagtttttta ttcggcgaga aaacccggag ttcgctatct 60 tggccaccat tttggacgcg gaggagggga gggagaaggt tctttcacac actcctccgc 120 gtccgtattt tccaaaatgg cggcgaactc cgggttttct cgccgaataa aaaaactcca 180 acgcctacaa gtaggcta 198 // ID DIRS-27_NV repbase; DNA; NEM; 3981 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-27_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3981 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3981 RA Kapitonov V.V. and Jurka J.; RT "DIRS-27_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 422-422 (2007). XX DR [2] (Consensus) XX SQ Sequence 3981 BP; 967 A; 920 C; 825 G; 1269 T; 0 other; tgttatattt gacctgtcaa aatgggtaat tattaacgta gatcatttag tacaccaatc 60 agaatggcat gttggtaatg ccaggttata cgatatttaa tctcaagcat gtgatgtgat 120 tgctcagttc accgtcctat tcaactgaga gcacgcttag ctttttatca atccgaactc 180 atccgccgga atggcatcca aatcctacag gactcggtcc aaatccaaat cacaaacatc 240 taatgttgct caagagattg ctgatcgctc ggcttaaatc gaggagctac aaatgtcttt 300 gcctttggct tcaccatccc acgcgggagc gcaacaacga gtagctcccc tcctaactcc 360 ccaggccata gtctctggcc cagcagctcc agctggaacg cacgaagcag gagaacctga 420 agttacagct ggagctgacc aaagcgcaac tgagttggct cgtttcaacg ctcccatttc 480 agcgcccgta gaacccttgg ctgatgtttt gagttccacg ccggcacgcc ccctcaccga 540 tgtgcccaac ttggcgacac ttcgcaagct ccgtcgcgat cgggcagtcc tccccaacga 600 attcctcttc acaacttcta aaggtacgct cgagtacgac aagctcgaca tttcggaatt 660 tgttgggggt ttcctggagt gtattaagag caagagcgag ccagaaaggc ccactcttgt 720 agcacacctc cagctgctca tggagaaagc agcatcatat tcttggtcca gtgtcaggaa 780 tttccatttt tctatcagct ccgcaataga ggctgggcgg ctcacttgga atgacgccac 840 cgtcattcgc gatagggcgc agatcgcatt cactcacgcg gatttgcgtt cggcttcgca 900 atcggcaccg cgaaatggga tctcgtctgc ggcaaaggcc aagaaagagc tttattgcaa 960 ggattggaac catacgggga aatatttttg tcccccaacg gatccagcct acaagtctgt 1020 tcttctttgc cgagtttgtg atgccaacca ttctatgctg tcgtgtgcca agcggcgatt 1080 cccgatacct aacactggtc cggttgtcgt acccggcggc aagcgcgagg gacattctat 1140 taatgatgga attccaaagg attcctatct gggcgatcag taccaattac aactgccggg 1200 agtcgacagg ctcgttgatt ttgttaatcg cctcggtcgt ggttgtcacg ttttcaaaaa 1260 agatttgagc cgtgccttcc gtcagatccc tgtggatccc gcggattatc ataatctagg 1320 attccaaatc aacgataaat tttacttcca tacttcgttc ccgtttggac tccgcacggc 1380 cagtttggct tgtcagcgca ctacaaaagc tgtggtttac attctaaaca ccatgggcat 1440 tttagtggat gtctacattg acgattttta tggtgctgca atgccggacg tttcacagga 1500 tgagttcaac cggatgaatt ctgtttttga cgaactcggg cttgctgcat cagccgctaa 1560 agacgtctta ccatgctatt gtatgacctg tttgggagtg gaaattgaca ccctagacat 1620 gactttgact gtcccacaat tccgggtgac tgaactccag ggagagttaa atgagtggtt 1680 aactaggaca ctctattcta aacgtgatct tcagcgtctt cttggcaaac tgtcgtttat 1740 tacttcttgc attcgtccag gccgagttta catgtgtcgt cttcttaatg cgttacgcgc 1800 aatcagttca cgtcactcca agttgcacgt tgatgatgag ctacgtgctg acatccactg 1860 gtggttatat cttttgcgtc attacaatgg tgtttcggtt attccgtcca acatcacggt 1920 ggcaaatccg gaattatttg cttctgacgc ttgtttgacc ggatgcgggg ctgtatgttt 1980 cggggaatat ttccgttgcc cattcccacc aagggtttta tctaagcaac tacatatcaa 2040 cgagttggag ctgttaactg tggtgctggc ggttaggcta tgggctacta agctacaagg 2100 gcttacaatt gaacttttcg tggacaatac cacttgtctt tacgccatta ataacaatag 2160 ttcagccagt tcagtgttac agctatgtct ccgagagcta tggttttatt tagctcttca 2220 taatatttct ttatgcgcgc gcttagtacc cagtcgcctt aatttcgtgg cagatcaact 2280 gagccgttcc catgccgact ttaattgtcg cgcacagttt aacgagtatg ccgagctcca 2340 caatttgttc gagcttgaga taccagattg ttatttcgat ttcgtagctg cgtcttaata 2400 tattttatgt ctcaagtatc cttttagttc atacatatct tctttggttt attttaaatt 2460 ttatttttca gatcgttctc agcaactcat ccattacgct tatgaggtgc agcgcttcgc 2520 ttttcaagag tccacgaaac gcaacatgcg aagtcaactt caagcgtata tacatttttg 2580 ttcttattat cagttagtgc catttccggt gactaagcaa acttatctag cgtaccttgt 2640 atttctttcg cgttccttat cgtgttatcg ctcggtgatt aattatgtca acattttgaa 2700 gcacgttaac aattcgctag gtgccgactt atcgtttatg cagggatacg attgtgtgtt 2760 gacacagaaa gcacttcggc gcatgatggg tgatcaggtg tctcacactc tgccgataac 2820 catcacgatt ttactaaaat gtgttcagaa ttttgattct cgcaatgtat ttcatgtatg 2880 catgcatgca gcgtttttag tcgccttttt ttcgttcttg cgtatttcca atttactgcc 2940 atacaaagca agcgatttgt taagttccgc aaaccttttc cttagacgca atcaagtggc 3000 ctttgtttcc tctggtgctc tattgtcggt ttatcgaact aaaacacttc aatttcagga 3060 gcggatctta gagattcctt tgccaaccat accaggttcg ccactttgcc ctgtttccgc 3120 attgaagcga tatttcgata tagttcctgc agcgccgaat agtccctgtt ttgtaattcc 3180 tcgcggcatc caaacgacgc cagttttagc ttcgcacttt aattcttttc ttaagaaatg 3240 tgttcatgcc atagggctga atccctccaa tttttcgtcg cgcagctttc gcaaaggcgg 3300 ggctacattc gcgtttaatc gcggggcacc gactgaattc atcaaagcgc agggtgattg 3360 gaagagtgat gcatatttag tctacttaac tctatcaagt agaaaaaagc tagctattct 3420 caattctatt acaactaggc ttgccaacaa gcaataacac agttatcgtt atacgtgtca 3480 atactcttca tgccattcta tttctattaa tatatttttt tcttattttt ttctattcat 3540 atttttaatt agtttattat tttttcgggt ttggggttta ttcattttat cgtattttat 3600 ttttattaat aattcacttg taatttagat cagtggcaga ttttaataaa ttagttgaac 3660 cccagccgcg tttactcttt tcacagtatg ttagtaattt gttaattttg acctgtcaaa 3720 atgggtaatt attaacgtag atcaattagt acaccaatca gaatggcatg ttggtaatgc 3780 caggttatac gatatttaat ctcaagcatg tgatgtgatt gctcagttca ccgtcctatt 3840 caactgagag cacgcttagc tttttaccac acccaccctc ccaagtgggg gtttattcat 3900 tttatcgtat tttattatta ttaataattc acttgtaatt tagatcagtg gcagatttta 3960 ataaattagt tgaaccccag c 3981 // ID TE-24_NV repbase; DNA; NEM; 813 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-24_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP228; TE-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-813 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-813 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-813 RA Kapitonov V. and Jurka J.; RT "A family of TE-24_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC There is a palindromic structure at positions 619-826 and 61-117. XX SQ Sequence 813 BP; 239 A; 182 C; 154 G; 238 T; 0 other; tatatcccag tgatgaattt tcacgcgcgc tcattggtca atacgggtca cgtgcacatt 60 ttcacaggac aaatatcagt cgataacgtc cagccaaagt gatatctgtc ctgtgaacat 120 ttttgtgcag tcaaaactca cttttcgtct gctcaataac tcctcaaaca aacaccaagg 180 ttttcaaaac gctatgaagg cacagaaaga atgtttgatt tcttttatag aattatcatc 240 aatatatttt tttagaattt atcctgaaac gcgaaagaaa aagcaatgac aaaaaacttc 300 acaacagcgc gcgctcgtgg cgtcattccc gtgcacgtca gcgcgcgcgc agaagacatt 360 tcaaaattga aaacttttgc ttcaatttct attccagctc tcagcagaac aataagaaaa 420 cagtctaggt gtaaatccat cagttgaaat gcaagttttg agcttgtagt ttttgttcta 480 atgaaaaaga attgttgcat ggatttttat ctttcgcgaa tggcaaaaat aacagcgcgc 540 gctcgtggcg tcattccagt gcacgtcagc gcgcgcagaa gacacttttc gcattttcag 600 tgtagtcact gggatataaa ataaataaac cccttctttg gctcactgtg atatcggcgg 660 ataatgtccg cggatgagaa atggtcctca aaatttcaca gttgccctcg aagcttcgct 720 tctcggccaa ctgtttattt ttcgtaccat ttctcatcct tggacattat ccgccgatat 780 cccagccgcc agaaggggtt tatttactaa ata 813 // ID Gypsy-8-LTR_NV repbase; DNA; NEM; 146 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-8_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8-I_NV; KW Gypsy-8-LTR_NV; Gypsy-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-146 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-146 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-8_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 581-581 (2007). XX DR [2] (Consensus) XX SQ Sequence 146 BP; 35 A; 35 C; 33 G; 43 T; 0 other; tgtcatatat gttgtgtacc acacgttggg taccctgtgc gggagcgcgg ttacttagcc 60 ggccagagtg ttctccagct gtatgaacag gctcgttgat tatatgctaa ataaaggttc 120 attcacacct tcctacatac tcaaca 146 // ID LTR-6_NV repbase; DNA; NEM; 196 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-196 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-196 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-196 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Copies are flanked by 4-bp TSDs. XX SQ Sequence 196 BP; 58 A; 41 C; 38 G; 59 T; 0 other; tgtagcaacc caaagaagca catttcattt ctccaagggg tttttactca acttcacaac 60 aaaccgtaca tttgcgttgt gtctataaac tcgttttcac gtgttgctta tatatctaac 120 acgcatgcgc gtggtgctaa atattcccta gggggggagg ggtgtataca ataaatgaca 180 aacgatacat tttaca 196 // ID DNA-7_NV repbase; DNA; NEM; 4043 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-7_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4043 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4043 RA Kapitonov V. and Jurka J.; RT "DNA-7_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 407-407 (2008). XX DR [2] (Consensus) XX CC Putative TTAA target site duplications. This is a composite DNA CC transposon: CC the consensus sequence of DNA-7_NV CC contains a copy of DNA-3A_NV (pos. 1665-2085). It also contains CC long 560-bp TIRs. XX SQ Sequence 4043 BP; 1250 A; 804 C; 789 G; 1200 T; 0 other; ttaagaccag cggtctgagt tcgtcgagat ttctcggaaa aatgatgttt gggcgcccta 60 gctcaaaact aaactggtaa taggtatggt tgacctcagt atactgtgaa agtttgaagc 120 aatttggata aatatttttg gcgatagaag ccgaaaagta atttttcgtc tcccgcaccc 180 ggatttgaga caatttcgtg gttgttagaa aaagactaaa aaccggttcg caacgcgtga 240 taaaacattt gcagcttata taaacctaaa gaatagataa taaggatttc ccaggctgaa 300 agataagctg ttctgtcagc accttattat tttacgcgat tttattttat tttatgtttt 360 tagatgactt tgaaaagcct tgaaatgatc gtgtaatatc gccgatgaga tgtggatttg 420 gcaaaaatga ttgcattcat cgaaaagaac atcatttcta cttttgatat gtgaaataaa 480 atttaggggc aaataaaatc cgactttttt acaagccgaa atatgacccc cacttgaccc 540 taattataaa caaatgccga ctactgtatc gggttttccg cattcaaaca acgccttcaa 600 atctccagaa aaacaagaaa gagcgctcaa atcaaaagaa atatactgtc ggcaatacta 660 aaatttaatg gtaataattt catagcattt attgcattaa attgcgattt ttaggctcgc 720 gtgatactat tttgtttgct gccatgcata cgtaattaaa gcgtgacaaa caaagcgaca 780 agcataaaat acctcaccat gactgcaata agacttttct gataattact tattaaaaag 840 aaaaacgtcc aaaagaagaa aatgagagtt ttgcatgttt ttatttaatt aacaagcgat 900 actgacataa ttttgtacag ttttaaattg taattaaaca aaaagcttga tcaaattgtc 960 aaaatttgct tattttcaaa gcctttgttc aactacaaat ttgatcaaat aaaaatacaa 1020 attatgcaag aacgctgaga catttgcgat attgaggcct ctcaccgtaa gctgttttcc 1080 tttttagtaa aagagagtat tgaagtgtaa aaacttactc tggtcttcac aacagaacac 1140 aggattaccg actcagaaat ctatttcatg taaccatgaa aaaaatataa tcgggaccca 1200 agaaatcgtg gatttatttt gcgcaactac atcttcgaat aacatccacg agcgtggcta 1260 caaaagaagc tttgcgtcgg gttgctccgg gcacttgaag ctccagctct ttgcagatag 1320 tgggaagggt ggccactgaa agaaaggtga gcctggacct ggagtacaag tggcacaagt 1380 cgatgccgtt cgcttctatt gggtgattta gttggcattc atctaggatg gcagctctcg 1440 tacggaagta ggcggctgcc tcctccgcag cctctactgc ctccgcaccc tgtgttattt 1500 tcgggaaaaa tacacctgta catggcccgg taataggaac tcgctgattt aatcggcgtt 1560 cccctgtata gagatgcagc ttgttgattc tatcacttca ttcccaatta atggtacgcc 1620 cccctcctcc ccccgactac tttttggtgg tagccaagct tgccgggaag ggggactccg 1680 ataaaaacag acgggggtga tcgtcggcaa aattgattgt aacccgttag ggatggcact 1740 ttaggcgtgg tcaacagaaa ttatttcctc taagagatgg aaaattgggt gaggtcgaag 1800 gaatttttgc ccctaaggga tagcagaatc gaaaaaaaaa aacccgttta acaccccctt 1860 aggaatagca attaatcgaa ttttataccc taagagataa cagaatggaa aaaaaaaacg 1920 tttaacaccc acttaggaat agcagttggt cgaattttac accctaagag atagcaaaat 1980 ctgaaaaatc ctccaacacc ccctaagaga tggcagttgg tagaaatttt ataccctaaa 2040 agatatgacg attacccccg tctacatttt tagagagtcc cccccccccc cccgggcaaa 2100 gatatgcatt ccccttcttt ggcaaactcg catttgccgt atagtgtgtg ccggtctaac 2160 caagccaagc gtgtatagcc tttcacgcac tggacagctg aatagctttg tggtaggctc 2220 ttcctcgttg ctgactgcgg gttctggctc agcggcgttc gccctgcgct cgacagcacg 2280 cttgatgtca tcgaattcac cgtcactgaa cgagcccgga aacgttgaaa tcgattggtc 2340 aggatgcggc ttgaaggctc tctctcctct tcccctccca ctcccctcgt ttttcatttt 2400 tgctcaaatc caagatggtg gctataatac accgggtaaa cgcccccccc ccccccctta 2460 ttgaaggctt ttcaaatatt attctttttc caaatggtac ctatggttga gcaagccaca 2520 ccttcccccc tcctcagtcc tctggtccta tgatctcctg cctgagactt tgtcaaagta 2580 aagaagcgct tatagagagt aattacctgc ttgcaataag cgtttactgc accttacgcg 2640 caatgataga atcctgcgtt gtcttgcttg tagtatgccg gtaaagtgaa tagtgaaagc 2700 gattttttta ctggttaaca agccaatcga ttggccagga caaaatttgg acggctgttt 2760 atcccggcca gacaaatttt gtcctcctag tgcgattagg ccctaagtta acgcgcgaaa 2820 aaatgaaaac agaaaagtaa cctcaaaatt tacctaggga gcttttttgg acatatgctc 2880 cctgacaaga atggaatttt tttggtagta ttgaaaacaa tagtaaaaag catcaactgt 2940 tattttttct tactttcttt ttataactca atttacctgg ggaatggaaa ttggttggtt 3000 atatcataaa caatagtaga aaagcttcaa ctgttatttt ttcttgattt ctttgtatga 3060 acgcttgttg aataaattaa ctcctcgaat ttgcataaca acacgacagc agaagatggt 3120 acgcgtttct agtccacgaa agtagggaac gaaagaaaat attataatgc ttatagaacg 3180 agggatggat agaaataaat ataggacgat ttaagaataa ctttcgtggg aaaaagtttt 3240 gtgatgctca tgaagcggaa gaataaagaa ccggaagttt ttagtgccga taataattat 3300 catgcatggg gattgtactt taaaatgtta tgaaaatata atcttgaaaa gcatataaac 3360 atcagagaga caagaatatt tgatcaaata ccagtatttt caagaattat attgcatcct 3420 tttttttggg agttttaatt gttatttata agtttttggt agcgaggcat taaaaagtga 3480 gtgtcggcat ttgtttataa ttagggtcaa gtgggggtca tatttcggct tgtaaaaaag 3540 tcggatttta tttgccccta aattttattt cacatatcaa aagtagaaat gatgctcttt 3600 tcgatgaatg caaacatttt tgccaaatcc acatctcatc ggcgatatta cacgattatt 3660 tcaaggcttt tcaaagtcat ctaaaaacat aaaataaaat aaaatcgcgt aaaataataa 3720 ggtgctgaca gaacagctta tctttcagcc tgggagttcc ttattatcta ttctttaggt 3780 ttatataagc tgcagttgtt ttatcacgcg ttgcgaaccg gtttttagtc tttttctaac 3840 aaccacgaaa ttgtctcaaa tccgggtgcg ggagacgaaa aattactttt cggcttctat 3900 cgccaaaaat atttatccaa attgcttcaa actttcacag gatatcatgg tcacccatac 3960 ctattaccag tttaattttg agctagggca cccaaacttc atttttccga gaaatctcga 4020 cgaactcaga ccgctggtct taa 4043 // ID MSAT-3_NV repbase; DNA; NEM; 32 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE MSAT-3_NV non-autonomous DNA transposon - consensus. XX KW MSAT; Satellite; Simple Repeat; minisatellite; MSAT-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-32 RA Kapitonov V. and Jurka J.; RT "A family of MSAT-3_NV minsatellite DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [1] (Consensus) XX SQ Sequence 32 BP; 12 A; 14 C; 3 G; 3 T; 0 other; tcaataaccc gaacacccag taacccgaac cc 32 // ID Kolobok-N6_NV repbase; DNA; NEM; 990 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N7_NV; Kolobok-N6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-990 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 347-347 (2007). XX DR [1] (Consensus) XX CC Kolobok-N6_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N6_NV transposon CC is characterized by 14-bp TIRs and TTAA target site duplications. CC This family is composed from ~200 elements that are less than 10% CC divergent from the consensus sequence. XX SQ Sequence 990 BP; 296 A; 203 C; 164 G; 327 T; 0 other; gggtgtactg acattagtgt tgctcagtaa cgacgttgct acgctggtgg cgttgagcgc 60 gcgcatatac ataacacgga attcgtcatt cacaagcttt cctgaagtaa aagaaacaaa 120 aatatgcgtt tcaagttccc aaaaattgac tttaagttga tctcagcctt ttcgggtgat 180 gatatttccc atattttgta aaaacgaaga ttcagcgaag atttagtcaa gccaaccttt 240 ttgaagccaa agttttcaat tttcactacc tgcgcgcgct gcaaacaccg gttgcaaacg 300 ctcgcgcacg cactgaaaat cttatttcaa agtagcgcgc gctgtatcag aattttaaaa 360 tactttttca attttcatca tgacatgacg gatatcgttc ctttgaagtg taaataccac 420 gaaacactat tggaatttgt ttttaaactt catttcaatt tcatcatgtg agatatcagt 480 gtgtctgagc aggccgaatg agcacgcgcg ggctttgttt cacttccggt tctgcgtttt 540 ctaaaaaaaa gcttttttgt cgccaagtta tttcaaaacg caatattttt tctgtattcc 600 tttttattaa attctccttc atatagccaa gcatggattt agcgttaatc taacagaaac 660 caaaattata tcaaataatc tggatttcag gacctttgaa aaatcataaa aaaacaatta 720 ctcaatcatt tctaaaacgc atgcttggct taatgcaccc atccctcaag attcataaaa 780 cgtattcaat atttgttttc gagcaatttt acttgaaata tttgctttta tctgtatcta 840 tgacgtcaca ttatgacgtc acggggtaac gtcatcataa tagtcagcac acttttgttg 900 gtcaacttgg caaatatcag acccttatga ctttctacaa ggcttttatg ctatattcaa 960 ttttccttag caacagatgt cagtacaccc 990 // ID DNA-2-6_NV repbase; DNA; NEM; 152 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-2-6_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 2-bp TSD; KW NVREP312; DNA-2-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-152 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-152 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-152 RA Kapitonov V. and Jurka J.; RT "A family of DNA-2-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 73-92% identical to the consensus. It was reported CC originally as the unclassified NVREP312 DNA transposon [1,2]. XX SQ Sequence 152 BP; 37 A; 40 C; 37 G; 38 T; 0 other; tcaccttccc catatcttcc cacaactctt tgcgacgcgc gcgtgaaacc gaggataaaa 60 acaaactttg ccatcttgtt tacaattttg acgcctgacc tcggtttcac gcgcgcgtcg 120 caaagagttg tgggaagatg tggggaaggt ga 152 // ID BEL-13-I_NV repbase; DNA; NEM; 5622 BP. XX AC . XX DT 24-MAR-2011 (Rel. 16.03, Created) DT 24-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Internal portion of the BEL-13_NV autonomous LTR Retrotransposon DE - incomplete consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP533; KW BEL-13_NV; BEL-13-LTR_NV; BEL-13-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 317-444 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 317-444 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5622 RA Kapitonov V. and Jurka J.; RT "A family of BEL-13_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 5622 BP; 1738 A; 1170 C; 1294 G; 1420 T; 0 other; tcaagccaag atagaagcca aggagctgga tttagaagcc aaagagtcag aaggtgatgg 60 ttcgtgtttt tcgtctccct catctaaaag gctttcccaa gaaaaggtga aacatttttt 120 ttcctttcaa gatcggtttc cacctccaga gattcctcac caaggttcaa atcgtaaaga 180 tctcgcattt gaagatttcg aaaggggtat gaagagtatt tctgagacgc taaagaagtt 240 ggatatgcct aagcgagaat ttgtatcttt tgatggtaat cccacctaat atcctatttt 300 cattaaacat tttgaaatca atgttgcaaa tgtcgtacaa gatgacaact taaggctttc 360 gtatttgata caatactgta cagggaaagc aaggaatgct attgagaact gtactatgct 420 tccagaaggg gagggttatt ctgaagcttt gaagattttg gaatcacact ttggacagag 480 acaattgttg tgcgcgcctt tattaacaaa atcgtagagg gttcccagtt aaaagttgct 540 gacactgaaa aacttttaga actatccaga gatatgcgca attgcctgtt gaattcttaa 600 gaaatgaaat acgaggcgga tgtcaactct tttgagactt tgaaacgtgt tgtcctacgg 660 ttacccaccg ttatgcaagc taagtgggcc aagatgactg gaaggatgct ggaaaatgga 720 ggacagccta atttttccga tctagtagat tttgttgaac gtaaagctaa atgtgcaaat 780 actgaatttt gaaagcttgt cggtttgaaa cctgtcgaat ccaaagtatt catgaaacca 840 caacttggaa ctcaatttgg tattgtacta tccacacagg cagagagtcc cagaccgcag 900 caaaaaacac ggcaaccaat ccaacaatag aacgccaagc aagaatcagg caatcaagag 960 catagcaagc gcaatgtctc caatgttcat ttccaacctt gcttgttttg tgaaggcact 1020 cacgagattg taaggtgttt taaatttcgt gataaggcat atgctgaaag actggacttt 1080 gtaagaacta agagactctg tgataattgt ttacaaccat accatataac caagagatgc 1140 aaggcttatc gcgcttgtct agtaagtgga tgcaataaaa gacaccactc gcttcttcat 1200 taagtcgact cttctggttc tgatcaagta acgaacgagc caggtgtaga agaatctact 1260 caggaaaaca caaccaatca cgtctcccaa gcaggtgtgt caaagccgaa ccagttgaag 1320 gtgttgctaa gaatcttacc agtaagagtg tcggcagtag atggtagtca cgatgtagag 1380 acatacgcct tccttgacaa aggatcagac actacactat gcgagacaag cctgctagaa 1440 gaacttggta tagaagggag acaaacaacc ttttcgttaa cgactattaa cgctgaaaag 1500 cagcaaagac aaggtcaaga agttaaattg aaagttaagt acttcgatgg tgatggtgaa 1560 gtccagttgg ataaagtgtg gaccttggac aagttaccga tctcgaactt atcaatacca 1620 tcatcagaag acatcagaaa gtgttctcat ttacaaggaa tcgactttcc cgaaatttcg 1680 aagaaggtta ccatccttat cggtagtgat gttcccgaag cgcattgggt ttttgaggaa 1740 cgcagtggaa gacgaaaaca accatacgca gtaaaaacgt tgcttggttg gacattgatt 1800 ggaccagtcg gaaatcagac gggacagtca ggacaagtaa attttgtaag cggagaccaa 1860 gaaatgctga cggcaaagat tgatggactt tacatcgcaa actttgtcga tgcacctacg 1920 tcaagaaaaa cctatttcga tagaggatcg gcgagcctta agcataatcg agaagtcggc 1980 aacgctatta gatgggcatt accagctttc tctaccatgg aaggttcaca atccgcgcct 2040 tccagacagc agaaccaaag ccattagacg actatgctca ttaaagcgac gactactcaa 2100 ggatgaggtc ctccatcgcc agtacacagc aacaatagac gaatatattt ctcaaggtca 2160 cgccagacaa cttcctacag accatcaaag cagcgatgac agtccgactt ggtacctcgc 2220 tcaccatcca gtatttcacc cgcagaaacc cgacaaagtg agagtagttt ttgactgcgc 2280 agccaagcat aagaacatct cattgaatga taagttgctt caaggtcctg acttaactaa 2340 caatctcgtt ggagtgctta tgcgttttcg tcaacatcct gtggccttta tggcggacgt 2400 agaacagatg ttttatcaag tcaaggtctc accacaagat tgcgaagctc tcccattctt 2460 atgggggccg ggaggtgatt tgtcaacagc accagttgag catcagatgc tagttcacat 2520 ctttggagcg gagtcaacac cgagctgtgc aagttttgct ctaagaaaga ggataacaag 2580 gctgattttg gtgaagcgac agttgaaact gttctgagga acttttacgt cgatgattgt 2640 gtcaagtccg tgcagactac tggcgaagct tttagtctgg tacatcagct gcatgagatg 2700 atgaatagag gtggttttca ccttacaaaa tggatctgaa acagacgtga ggtacttgtc 2760 tcgattccag aaaaagagca agccccttca ttgaaagaca aggatattga tctggatgat 2820 ctgccgatag aaagaaccct aggaatgaca tggaaaattg aagaagatgt cttcagtttc 2880 cgagctcttc aaaagagatc cgtttccacg agacgtggta tactatccat gacatcgtca 2940 gtgtacgatc cacttggtct ggcagcacca cttgtactgc cagctaagaa gatccttcaa 3000 ggcttatgca agagcgacta ttcatgggat gaagttattc cagacgcaga gctcgagatg 3060 tggcgagatt gagttggtga tattggttat atcacagatg taacagtgcc tagatgtgtg 3120 aaactacagc cattgtctaa aatacagccc atacagctgc accatttttc ggatgcttca 3180 actgagggat atggcgccgc gtcatattta cgcgttcaag atactgatgg tgttgtgacc 3240 tgcaatttat tgctcgggaa agcaagagta gcaccattga agtcagtcac aatccctaga 3300 ttagagctca ctgccgcaac agtcgctgtg aagctacaca aacagatcga agaagaactc 3360 gacctaccgg tgcacaagac ttatttctgg acagattcga tgattgtttt gcaaagtatc 3420 aggaacaaat ataagcgttt caagaccttt tttgctaatc ggcttcaact atccacgtta 3480 tatccagccc agatcagtgg tttcatgtga gttctgctat gaatccggcc gactatgcct 3540 ctcgaggcct gaagacgagt gacaaggata agattcaagt atggctaaat ggtccacaat 3600 tcctaaagaa ggaagaatgt tggccttcac aaccagttaa tgatacttgt gccgaggaga 3660 tcgaagttaa caatgtgagc agcaaccatg tgagcagtaa tgtgaaagag ggtttagaca 3720 acatgattga gagttattcc tccttgtatg ccttcctgaa aggagttgct tggatgatgc 3780 gatttaagaa gtacctaata catcaggtgc gccgaccatc cgacgttgat cttaagatag 3840 gagatctcac ggctcaagag atttcagaag ccgagaacga gatagtgaag tatgtagaac 3900 gacagagctt tccgagggaa atgaaaatcc tggaagttga agaaagaaag agaacagaag 3960 agaagaagga ctactcaaga tcttcaggtc ggcgattgaa cagcgcgcca tactcaagtc 4020 cccttttaaa gttctgccca tttgtactcg atggattgat ccgagtcgga ggacgtcttg 4080 atagagcatc gatccaatac tcatcacagg taagcaccac atcacagacc tcatcactca 4140 tcaagttcat aacaaagaag gtcatatggg tccaacccaa gtgctatcaa gcggattgat 4200 agcacttgtc agtttcaagt gctatcaagc ggattgatca agtggattga tccgagtcgg 4260 aggacgtctt gatagagcat cgatccaata ctcatcccac gtaagcacca catcacagac 4320 ctcatcattc atcaagttca taacaaagaa ggtcatatgg gtccaaccca agtgctatca 4380 agcgttcgtg agaagtattg gatattgaaa ggaggggcag ctgtaagagc tgtactaaag 4440 aagtgcatca aatgtaagcg gtggaaggcc aagcctcaag atcagattat ggctccactt 4500 caattagcgc gcgtcacacc tgataatcca ccatttacct ttgttggaat tgattacttc 4560 gggcctatac aagtcaaagt aaagagaagt tacgtaaggc gatatggatg cgttttctct 4620 tgtttaacta tgcgtgcagt tcatatcgag ttaacgacag actcttttct tcaagccttc 4680 tcaagatttg tgagcaggag aggaccgcca agggaagtct ttagcgacaa tggaactaac 4740 ttcaagggag cagaagaaga tgtcagagaa gccttgaaaa cctggaacca agaccgtatc 4800 agagatacct tgcgagagaa taagatcgaa tggcatttca atccccccaa agcaagccac 4860 accggaagat tatgggagag aatgataggt tcgattcgca gaatcctgcg cgtcttactt 4920 gctaaccaga cggtggatga cgaaatactc agtaccatga tggcagagac agagaacatt 4980 ctgaatgatc gccccctgac gcgtatcaca gctgacccaa acgacctaga acccttgacg 5040 cctaacaagc ttctgttagt ctacagaaat ccatgcatag ctccaggaga cttctcagtt 5100 cttgctgata gatttaccaa gcgctggtcc gtcacgcaca gtacctatcc aatatctttt 5160 ggagacgatg ggtggagtat atgcaagctc tccaagaacg tcagaagtgg ctgaaaccaa 5220 ggagaaatct cagcaaagga gatctagtac tagttgtgga tgaatcatta cctcgtggac 5280 ggtggcctat ggaagtgatt gatgaagtag ttcccgacaa gttcggtgct gttcgccacg 5340 tgatgatcaa gactgcactc tcccatctaa agagagatgt acgcaaggtc tgcctactag 5400 aagcagcatc cgcaccaacc tagatgtcaa gatatgtctt aaagtttgca aacgacttgt 5460 gagtttacag actcactact gagtgaatgg acttatcaag tgctcagaga agtaccatct 5520 gatatgaaca ctattatgaa cactattcat aaattaaatt agttagtttc gcagtatttg 5580 tgttgagtgt gtcaggactc aatggtcctt cgggggccgg tt 5622 // ID DIRS-10_NV repbase; DNA; NEM; 4208 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-10_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4208 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4208 RA Kapitonov V.V. and Jurka J.; RT "DIRS-10_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 404-404 (2007). XX DR [2] (Consensus) XX SQ Sequence 4208 BP; 1259 A; 906 C; 895 G; 1143 T; 5 other; aactggtttg caaaggacat tattgaaaca gaaatatcca aactaatcca gaaaggagtt 60 atccaaaagg caaccccttg caaagagcag tttatatcgt ctgtgtttac acggccaaaa 120 aaggatggtt cgtttagaat gatcctaaac ctaaaccagt ttaatgcttt tatcacatac 180 catcacttca aaatggaatc actgcagtct gctttaactt tagtaaagcc aggctcattc 240 atggcagtcc ttgaccttaa ggatgcgtat tattctgtga gcattgctga ggaacataga 300 tgttacctta gatatgtctt catggaacaa ctctatgagt atgtcagtct cccaaatgga 360 ctggcctcgg cacccagaat gtttaccaaa ctcatgagac ctgtctatag cagcctcaga 420 gcagacattt gttttgttgg atatatagat gacatcatca ttttggctga ctccccagaa 480 gagctacgga cagctcttaa agagaccagg gatttactga catcattggg ttcttcatcc 540 atgaaagcaa atcttccggg catttggaga aaattacaag agcacacaaa gaaacgtgac 600 atgcacatgg tgaaaatgca acaagctctt gtaaagggaa tcatcccagt tgcccatgtg 660 gctgacaaag ctatggtgtc caagtcttta aatttggacg aaatacagca aattaagaaa 720 agttgcctgg aagcattgtc cctattaact catgttaatt atgagattaa catccagcga 780 aggtttctca tgaaaccaga cattggatct gagtatgctt ccctttgctc acctctggtg 840 ccattcaccg ataacctgtt tggtgacgac ctccaaaaac acctgaagga cattggagat 900 gaaaataaaa ttggagccaa aattaacaaa ggaacaaagg gcaacccaca tgcttcccga 960 cctggttttg gcagagggtt ctacaaccag aacaggccaa aaaaccagag cagccggggt 1020 gctccctacc ccggcaggaa ttaccatcac aaggggagcc ggcagcagag agggccaaag 1080 gcctcctgag taatacaaat gtaagtaacc atgccatgag ctttagagct ggcaatatag 1140 caaacttctt tgatgcatgg agggaactca cctctgatgc aacaattctt gacatggtta 1200 agggctgcca tattgagttt ggcacagaac ctgttcagca taatttaccc aaatcctttg 1260 caaaccagtc acaactggaa aaggacatta ttgaaacaga aatatccaaa ctaatccaga 1320 aaggagttrt ccaaaaggca accccttgca aagagcagtt tatatcgtct gtgtttacac 1380 ggccaaaaaa ggatggttcg tttagaatga tcctaaacct aaaccagttt aatgctttta 1440 tcacatacca tcacttcaaa atggaatcac tgcagtctgc tttaacttta gtaaagccag 1500 gctcattcat ggcagtcctt gaccttaagg atgcgtatta ttctgtgagc attgcttagg 1560 aatatagatg ttatcttaga tttgtcttca tggaacaact ctaagagtat gtcagtctcc 1620 caaatggact ggcctcggca cccagaatgt ttaccaaact catgaagcct gtctatagca 1680 gcctcagagc aaaaggcatt tgtttggttg gatatataga tgacatcatc attttggctg 1740 actccccaga agagctacgg acagctctta aagagaccag ggatttactg acatcattgg 1800 ggttcttcat ccatgaagcc aaatcttccc ttacaccctc tgaagaggtt waatttttgg 1860 gaaaagttgc ttcagtaata gggctcatgg tgtctagctt cccaggtgta cgttacggtc 1920 cattgtttta ccgtcaactt gagaatgaga aaacggtaga actaaaacac aatggacaca 1980 acctggatgc cacaatggag ctatctacat tagctaagga ggatttaaag tggtggacag 2040 aaaatgtgga actttctcca gtacctatcc ttgtccctcc ggcaaatgct atacttaaat 2100 gtgatagctc ccttttaggc tggggcagtg ttattgatgg ctctaataat gttactggtg 2160 gcaggtggag ccctgatgaa gccctctttc atattaattt tctggaactg aaggcaataa 2220 aactaggatt acagtcatta tgtagccata tgtgcaacac tcatattaaa gtgctgtctg 2280 acaaccaaac agcagttgcc tatattaggg caatgggggg aaccccctcc gatctatgca 2340 atcaaatgac cagagaaacc ctactctggt gtwagcagag aaatttatgg ctaaaaagct 2400 cccatttgcc agggcattwa aatgtgactg cagataaagc cagtagagaa tttaaagaca 2460 acactgagtg gtccttggat atatcagctt ttaacaggct tgtcgcacaa tggggtcagc 2520 catgtgtgga catgtttgcc tcaaggccga ataacaaagt acaaaaacat gtatcttgga 2580 agcctgaccc tacagcattt gccatwgatg catttacaat agattgggct caatatgacc 2640 tcatttattg ttttcctcca tttagcttga ttgggaaagc tctccaaaag attcaagctt 2700 gtcagtgcac agcacttgtt gtcgccccac tgtggaagac actgttctgg tacccgaagc 2760 tgttaaagat gctaatgaag cctcctattc caataccaat gacacggaaa acactggcgc 2820 tgccacgacg accctttaca agttcaccct atgtatccca acctaaaact gattggctgt 2880 ctagtgtcag ggaaatgctg aggggaaaag gaatcgacgg ggaaccattg gaaataatta 2940 ttggctcctg gagagacgga acaaaaaaag caatatacaa cttacattaa acgatgggtt 3000 gagtattgtc aagtgaacag tgtgtgtaca gctacaccat ccttgggtca agtactacag 3060 ttcctgtcag gcctgtcgtc cagaatgggt tacagtgcgg tggcaactgc aaggtctgca 3120 ctttctttat ttatacagct tgatggtgtg aagttggggg atcaccctct cgtatcgagg 3180 tttatgacag gcttgtttaa caagaagcct gcattaccaa gatatgtgga aacatggaac 3240 ccacaaattg ttgttgggta ctcaagggct taccctacta ccagtgaact ctccctcaaa 3300 caactcacct tgaagctaac cgctttaatg gctttgatta ctgctcagag aacacaaaca 3360 ctccaggctt tatcattaga tggggtgact gcctctagga gtcagtatac ctttcgggtc 3420 ataaccccat tgaaatatac aacacgatat ggggggaaaa gcaagcactt agctcccatt 3480 gtgttgaagc aatatgacac tgatgttaga ttgtgtgttg ttacattgtt aaatgcatat 3540 ttgcccagaa cttctagtat tcggacatct cagcagttgt tgttatgcta cactaagcct 3600 tatgggcctg cgtcacgaga aacaatatcc agatggataa agcaggttat gaaaggtgca 3660 gggattgaca cagagatatt caagtcccat agcacccgca gcgctgctac atccgcagct 3720 aaggcagctg atgttccatt agatgatatt ttggcagttg ccggttggag atcagacagt 3780 gtttttgcta ggttttatga taagcctgtt caacaagagc aatctgctag tgtatttgct 3840 caatctgttc ttcaagccag ttaagcacca tgacccagtt ggtcttgtgc tatatatttc 3900 aagcaatatt gatattaatg aagtgattta ccagcttaca gctgtatacg tgctattgtt 3960 atttggcaca catgttgctt taaaatctca cgtgacctct gattgtatgc aaatgcgagg 4020 taaaaaatga agaggtcact tcccgcctct tactggagcc cacccatgcg tttgtaaaca 4080 tggccaccaa ataactcgtc tttaaagcct gagctcgaag tgcatgcttg cacttcgcac 4140 gtgattctct atggtagaat ctcaatcaaa cttcaactta caggtaagtc tcgtttaatt 4200 tttcaatt 4208 // ID DNA-9-28_NV repbase; DNA; NEM; 175 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-28_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP682; DNA-9-28_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-175 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-175 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-175 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-28_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 78-93% identical to the consensus. It was reported CC originally as the unclassified NVREP682 DNA transposon [1,2]. XX SQ Sequence 175 BP; 33 A; 54 C; 53 G; 35 T; 0 other; tagcctgcgt agcaagcgca aagggctggg gaagatgagg gatagacccc gcgcgcctgg 60 agagaaggat ggagcgaatg gggaaaggga gctccctcat ccttccctct ccctagcgcg 120 cgcctcgtct ccgtctctct tctttcccaa ccctttgggc ttgctacgca ggcta 175 // ID CR1-16_NV repbase; DNA; NEM; 4761 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-16_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4761 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4761 RA Kapitonov V.V. and Jurka J.; RT "CR1-16_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 393-393 (2007). XX DR [2] (Consensus) XX SQ Sequence 4761 BP; 1412 A; 987 C; 826 G; 1535 T; 1 other; atgtctgcgt ggtcggacgt gtcctacaga gctccgtcaa tttctaccaa agactattga 60 aatcaagtga aaacactacg agaaatcata ttttattaag cgggaggaca tcgttttttg 120 gaccaagtcg tggctacgac taacgtaact gatttggaaa gcatttttta cacgattttg 180 aagagactgt agagaccaaa gcctcagacg acattttcta cagctatatt ggaactcctg 240 gtaaaccaca accattcttg ctcttgatgc tcttatttat ttatactcct agtcgttact 300 ggacttttac gtgcgctcat aattgattgc tttacctaag tttgtcagtt tcttttaata 360 cccgtctatt taattttccc gccaaatact tcttgacttg tttgtacgct ctggtgatca 420 acaacgcttt gtgagctgcc taggcagcct gtttgataaa gtctatgctt gtgaggctac 480 actcttttga ttgattcttt ctcgttgcca ttttctgatt gattttctgt gtaattttat 540 tttcattcag cctttttact aaacttaatt aattcaccgc cctagtggtc agtcacccgt 600 atacttcaac ttagcaatat ttgcatattt gtttgcgttc ctacggcatt gttctttttg 660 aaagtgcgtt gtgtgttccc gcgggactgc tttgacctct tcaaatactc actgtgtttt 720 cactgtgcaa agtataggtc ttgtacattt acaaattact tatttgtact ttatgttatt 780 catctgcgcg ctaattgctg aaaattgcaa aagtacgtac ataagtacaa aataaagtta 840 aactaaatgt ataaaagttt acaaacgtta aatggataaa aaacaactaa ttgaactaaa 900 gtaaatgaac cagtttgaca gactttataa aatcttattt atattttagt ttttaataag 960 taataacaaa gtatataata agaaagtaat tttagtcaaa acttcttatt ttcttgaaac 1020 acccaatttc catcatcaag tacaaatatt ttttctttct ggtttctggt gcgcacaatg 1080 aggagcagcc ttgcacttgt tctctatgtt tcacttatgc tggtgctggc gtcttcgaaa 1140 gcgcctgttt cctccgaggt tcgatggata gggcattgct ccactcgacc gattttctgt 1200 tcaagagtac gaatcagaag acagaaatgc ccttgcatgt attataacaa cacgagtgcc 1260 acctttcacc tccctcttga aggtgaccta gttttcaaac tgaacccagg acctgagaac 1320 agccccattc caacagttgt ttcatctcac tctaaagttc gtagttctac atggactcgg 1380 acacgaaacg ctcgtaatct tattgatact caacagtcgc agctagagat gaacaaccct 1440 cagcaccttc atcgaacata taacttttcg atgatgaaca atgtaaggca acccatccct 1500 gttcttgtca ataactatcc agcaaatgat aaactggtgg agtctcaatc taaacgaaaa 1560 tcggtgagat caagtaattt aatcccgatc cctattgtca ataccaacaa agataatata 1620 aacaaaaaga tcagactgcg tctgtctcac cttaatgtta gatcagcaaa taataaagct 1680 ccaattataa aagactttac ggtggacaat gccatagata tattggcaat cacggagacg 1740 tggtttaaga atggtgatta caattctgtc gaaatgggta ccctttgtcc tacaggatac 1800 cgttttcttc acagcccaag gctaaatgca agaggtggtg gtgttgcact gctctttaaa 1860 gatcgtcttg aaatcaacag ccggatttgt gaacagttca acacgttcga gttcatggat 1920 gtgcggcttc gtgattctgt ccagctcagg atttttgttg tctacagacc acctgaatcc 1980 acatacacat tgttttttga tgagttctct cgattactgg agcaggttct cgctgagtct 2040 aatggtcaac tattgttcat tggtgatttc aatctccaca tggatgatgc taatgacaga 2100 tatgctaaaa agttttccaa catattagat gcatttgacc taaagcagca cgtcaaaggc 2160 ataacgcata aagatggcca caccctagac cttgtaataa ctaggtctga tgatgacatc 2220 atcaaaggga tttctgtccg gaacccgatg atttctgacc accatgccat acactgtgaa 2280 cttgaccttt gcaaaccaca gtttgcgaag aaagtcgtga atttcagaaa gcttcgatcg 2340 gttgacatag accaactttc tgaagacctt ctcaactctg aactttttca aaaccaacaa 2400 gtgaatatta ataacctggt tataaagtat gacaacaccc ttaaggcact gttagacaag 2460 catgccccac taaaggcgaa acttgttacc attcgcccaa aagctgcctg gtatacaccc 2520 gaggtctctg aggaaaagag aaagagacgg cgcttagaga ggaaatgggt ttccactggt 2580 ctttcaactg accgtgctaa ttatgcttac cagtgtgggg tagtcaataa tcttattgat 2640 tcactaaaga cctcatacta cacatcgatc atacaggagc attctttgga tcaaaaggtt 2700 cttttcaaaa ccattaacaa acttcttgag aagaagtcag ttcaatatta cccagttgca 2760 tcctctagtg aggtgttagc caacaacttt gctgatttct ttaatgaaaa aatatctaaa 2820 atccatctag atctaatgga acagcaaacc atggttggcc ccaaccctta ttgtgaccat 2880 acgtgtacag tggaaatgag tgaatttgat gtaatttcag aagatgatgt taagatccta 2940 gctcacaagc ctatatcgaa gtcttgtaat cttgatcctt tgccggcctc cctcttaaag 3000 ggatgcttta gtacactcct tcctataata accaggattg ttaatgcctc gctttcatca 3060 ggtgtaatgc ctgacccaat gaaagttgct gaacttcacc cttcattgaa aaagcacaat 3120 gccaatcacc tactttaccc taactttcgt ccagtctcta acctaccgat ggtttctaag 3180 gtgatcgaaa aagctgtcgc tgaacaattg acaaagcata tagttagcaa taatttggat 3240 gtttccctcc aatcttctta taagaaattc cattccacgg agacagctct tattaaggtg 3300 cagaatgaca tcttatgtgc cattgatggt ggaaactcgg tattgatgct actgcttgac 3360 ctgtcggcgg catttgatac cgttgatcat tccattcttc tttcacgtct ctcattgagt 3420 tatggcctga ctggcaatgt tctcgcttgg ttccgctcat accttacatc ccgcaaactg 3480 tatgtacggg ttgaggactg caagtcatct ttgcgtagcc tggaacgagg tgttcctcag 3540 agctctgtcc taggcccgct actctatctt gcctatactt cgcccattgc tcagatcata 3600 gcacgacatg gcattctata ccacctttat gcggatgatt cacaacttta cgtttctttt 3660 cgaggtaatt cacaagatga acttttgatg gctaaaacta aagttgaatg ttgtgttcat 3720 gagatcaatg cctggatggt gcataatggg ctaaaactaa atcatgataa atcagaactt 3780 attctttttt cctccaagtt ctgtcctgcc ccaagtcttg aacatgtaaa ggtggttgat 3840 gaaatcatca aacctgcctc cgctgcatgg aatctgggag taattcttga taagtatctt 3900 tcttttgaag atcatctcaa aacggtatgt aaatctgcaa gattccacct cagaaatatt 3960 ggcaaaatta ggaagtacct tgacaagaat tccacagaaa tacttataca tgcctttatc 4020 agttcaaaac tagactattg caattccctc ctttatggat tacctgacta ccaaattcat 4080 aaattacaac ttattcaaaa cacagctgct cgtattatca gcttaacaaa aaagactgag 4140 catgtaacac ctatcctgca agatctccac tggttaccag taaagtaccg gataattttt 4200 aaagttttac tgactgtttt taaatctctc aatgaaatgg ctccaccata tattaaagat 4260 ctatgcaagt ataaaactca ttcccgatca ctacggtctg cttctcaaca ataccttcag 4320 gtcaaacggg gcaatttgaa gacctatggt gaccgcgcct tttcgattgc ggctcctaaa 4380 ctatggaatg agttgccatt tcacttaagg acaatacaaa atcttaatac tttcaagcaa 4440 tgccttaaga ctcacctttt taaagaagca tttaatttat aattagttta aaattcattt 4500 tttttaatat cactgttaat tatacattac atacatatat atatatatat atattttttw 4560 aattataata tcgattttta taaatgtaac atttcctatt agacacaatg tattgtcagg 4620 gtgattttta atttttaatt gtgtaatgtt tatttaattg atatataatt gtaaagtgcc 4680 tagggcaatt attgatgagg cgctatataa atgctgatat tattattatt attattatta 4740 ttattattat tattattatt a 4761 // ID DNA-AATT-1_NV repbase; DNA; NEM; 916 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-AATT-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-AATT-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-916 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-916 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-916 RA Kapitonov V. and Jurka J.; RT "A family of DNA-AATT-1_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 916 BP; 273 A; 194 C; 177 G; 272 T; 0 other; catagatccg acatgtcaat cacgcgcgca cgaatagcca atcaggaaag agatggtgca 60 ataacagcca tgtggtccca caaatgtccc acaaaaagtc ggcaatcgac ggcgaaaaag 120 attggtttga gatatttttc tgcgaatctg gacaagcaaa ataagcattt tccggtcagc 180 gtagaaagtg ctagccctgt tttctttgac cggccacttt tagtgtagag ttgggactca 240 aattgtagaa aaacacgtaa aatttactac gaagaaacga aaaacaaaaa gcaaacaaac 300 cacttataca agagcagtgt aagtcctacc attaaacttg tgtttgatat tatacctagg 360 ttacttcaat tacatataag aatgagactg tcgtttgtat ttttgctgta aatcttgacg 420 tttgccgata aaacttgtag ttagaagtca ggcgtaaaca gcgaattcgg ctttctcttc 480 tacttttccc cgcacttaaa tcactgcaag ttgacaaaaa tagctttgaa agcacataaa 540 cacatagtac ctaccgaaga gagcaccgct ttatcttatc atttccaagt tttcgtattt 600 cgagctggat tcgtgccgtt tccattcaac aaccaaactt gtagttatct atttctatgc 660 ttcattctca caagattttc accaagcttg gacaacaaga caagtttcca tcatgttagg 720 tgaccgtgtt ttatttccca agtcgcagga aaacccctat aaacgtctgt attttagata 780 aatccgagca ggactcactg acctcatccg acatgttgta caatttgtgg gacttttgtg 840 ggacatttgg gttgcacttc gctggcttct atttgctgct ttctgattgg atattcgtgc 900 gcgcgtcgga tctatg 916 // ID Gypsy-36-LTR_NV repbase; DNA; NEM; 132 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-36_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36-I_NV; KW Gypsy-36-LTR_NV; Gypsy-36_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-132 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-132 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-36_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 504-504 (2007). XX DR [2] (Consensus) XX SQ Sequence 132 BP; 39 A; 26 C; 27 G; 40 T; 0 other; tagagcattg tttggattcc ctgtggaagg actgggacta gcccggtcag aactcattgt 60 agttctttat cattccgttc gttcatgtaa taaaacatca ttgcaaacag gaaaaagaag 120 cactcttatc ta 132 // ID Gypsy-10-LTR_NV repbase; DNA; NEM; 146 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-10_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10-I_NV; KW Gypsy-10-LTR_NV; Gypsy-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-146 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-146 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-10_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 452-452 (2007). XX DR [2] (Consensus) XX SQ Sequence 146 BP; 44 A; 30 C; 27 G; 45 T; 0 other; tgtcttgatt ttctaggtaa tatttattag aaacaacaac gtagtttaca aggtccgagc 60 tgtgtcagcc atgctttcat gagtgcctcc tattctaagt gacgtcacgt aaaactacaa 120 gagactgtca atcaactatc gtgaca 146 // ID DNA-7-3_NV repbase; DNA; NEM; 782 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-782 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-782 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-782 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 782 BP; 214 A; 161 C; 184 G; 223 T; 0 other; cacaggcagc ccaaggctac tgtcagtggt ttataaagga atgtatgggg gaatttatat 60 gttagcgaaa aaatacttta tcgtgaaaaa taaaacttta gaccatgtaa tattgtgttt 120 gagtcttcct ttatttcaat acgaggcact gctcggaaat tcaaacttcg aggagtcgtc 180 ggcgcgacaa cggccgcgcc gagtgagtgt ctactgtcgc gccaccagcg ttgcagggaa 240 aacacactca ctcggcgcgg ccgttgtcgt accgacgact cctcgaagtt tgaatttccg 300 agcagtgcct cgttcctaga gcccctcggt tagaaagtgc acacgatctg ttgtcacaga 360 tggtgaattc gatagtcgac ggtaaaaagt gtaaaaaata tgagtgaaat tcgcaaatcg 420 gtgacatgag actcggttca attgaaagct aaggtatgtt ttcaaagtgt ttttgtgctg 480 gattggcggc tggttgattt ttgcgagttt tatcgggcct cgaagtagtt gtgtggtggc 540 cgttagccga tggagtcccc agcctttcct atttttatac agagagagaa acacaattcg 600 tggcgggctt caaactcgct ctactgacat tctatcggca aaattgaaat aaaggaagac 660 tcaaacacaa tattacatgg tctaaagttt tatttttcac gataaagtat tttttcgcta 720 acatataaat tcccccatac attcctttat aaaccactga cagtagcctt gggctgcctg 780 tg 782 // ID DNA-2-3_NV repbase; DNA; NEM; 273 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-2-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-2-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-273 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-273 RA Kapitonov V. and Jurka J.; RT "DNA-2-3_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 388-388 (2008). XX DR [2] (Consensus) XX CC DNA-2-3_NV elements are flanked by 2-bp target site duplications. XX SQ Sequence 273 BP; 83 A; 48 C; 60 G; 82 T; 0 other; caatcagcga caaaacctgt tgaaaatgac atctaaaaag tagtcttact gaaataattt 60 acaatatggg aactttttat tactcacatc ccccttcccc ccattcaaag ttgctgtcta 120 gggttgtcag taaaagaatc caacattgat ttgggggaga gggggttggg atggggaggg 180 gaggatatca aagtcactat gctacgtaat ttagatttcc atctgaaact gcatttgagg 240 cgttaaaatt ttcaacagtt ttgtcgctga ttg 273 // ID Gypsy-18-LTR_NV repbase; DNA; NEM; 200 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-18_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18-I_NV; KW Gypsy-18-LTR_NV; Gypsy-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-200 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-200 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-18_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 466-466 (2007). XX DR [2] (Consensus) XX SQ Sequence 200 BP; 71 A; 29 C; 37 G; 63 T; 0 other; tgtagtgtat tagcacactt tacttaagta tcatataaca gagatgacgt tattgataat 60 gattatttgt aataccatat aaggtcatgg cgtatgccat aagttgtaaa tactgtgatt 120 aaagatcagt ctatattcgc aaaccaaagc gtgcggttgt gttaactgac tccaatgaat 180 atatagcgaa agacactaaa 200 // ID Polinton-N1A_NV repbase; DNA; NEM; 14355 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone Polinton-N1A_NV non-autonomous DNA transposon DE - consensus. XX KW Polinton; DNA transposon; Transposable Element; nonautonomous; KW Polinton-N1A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-14355 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-14355 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-14355 RA Kapitonov V. and Jurka J.; RT "A subfamily of Polinton-N1A_NV non-autonomous DNA transposons RT from the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 14355 BP; 3036 A; 4320 C; 4019 G; 2980 T; 0 other; gagggggact ggggggtttc agataaactg gtgggaggcg tggatcgccc ctccgggcct 60 cccagccccg tctcccgtct tgggcctggg agacgcgaat cgcccctccg agccccccag 120 ccccgtctct atatatcgag cgtataatgt ttcacgcaca taaacaatcg gcgatcgcta 180 atgtaggccg aatcgatttc acgtacataa gcttttggca attgctaatg taggccaaat 240 cgatttcgcg tacggggcga ttgctaatgt aggccaaaac ggtttcacgt acatgaacaa 300 tcggcaaaag ctaatgtagg ccaaaacgat ttcacgtaca tagacaatcg gcaaaagcta 360 atgtaggcaa aatagatttc gcgtacacga ataatcaatt agggccgcag gtgttttgcg 420 tgcatgaata ataattaggg ctgcaggtgt ttcgcgttca tgaataatta gggtgtaggc 480 cgggcgcgtg caagcccaag gacttgcgcg tacacgactt tttggggcaa atagcggtgg 540 ggccgcgaaa acgaggaggg ccgccagtct acggagcgtg gagtgaccgt ttttcggccg 600 tgagttcaaa gccgcaggcg tggcgtttaa acctgagttc tactcgaaca cctcgctccc 660 gaactcctcg cgaatttttc gcagtctctt tttcatcctt tcgcgtgcca ccagggaggg 720 cctttcccgc ttttttttat catgcgatgc gaggccgtgt cgagctctga tagcggcctt 780 gagcgcgttg tatctctctt gttcctgaag tattagccga aactcttcgt ctgagatacg 840 cccgtcttgc agagccttag agaccagctc gctgatcgag tttttcttac tctccgctag 900 aaccatcgtg tcttcgtgtt tagccacctt gctcgtaaga cccctagaga ccacccccgc 960 ggccgcgccc acgacaccga ccagcccagc gacccctgcc agcggagcgc cgagcagaac 1020 ccctatccca ctcaaagaga ctcccagccc ggcgctggaa agcgcccctg cagcgatgcc 1080 ggatgccaca gacacagcat gggtaacggc gaaggcgcgc ttatacttct tccgcacctg 1140 tcgataatgc gttatctcat tgtctagaac cgcctgagtg tcacgtatta cctggagtcg 1200 aaaactttgc gcgtcgccgc cggtgcttgc cggagcggta ggcgtttgcg gggggtgggc 1260 actggggagc gggggatata tggatatgcc accgctgcta acgtcgctgt tcgccatgcc 1320 tgttatgtcg ggcctaggtt agctctaata cgaggcgaac aggcttgtcc ttaaagtcca 1380 cccgtctacc gcggtcatct ctgatccata ttcggatact cgagacaaac tcagaggaag 1440 acgctgcgac acaaatgggg atgtcgggcc catagacgac tttctcgtgc ggcctcccgc 1500 gggtttctag gcaagcgaga acgtttgaag gctcgtcaaa ggcgaggcac tgcgagcggt 1560 ctacgatgtc gcagaagatg tagatggcct ctattttcgg caaagtcacc ttaagtgggg 1620 ggtcccccaa gggcagtgcg aggccccgct cccccatctg atcgtcttta gcctctaggc 1680 caaatagtgc gcaaagctcg gcgttcagga acacaatgcc tgtggacacg agcacgatct 1740 tcccggttag gggatccagc ttcgcggtca gaatctggct tttaacgtgg ttgatcgtct 1800 ccacggtgga ctcggccgtg tggtgcccgg ctggcagagt aacgatgggc gggagggagg 1860 ctatagtcgt tatctgatgc tcccgctcga gattatacca gctgttaaac agcgagcact 1920 gtcggagcgc cacaaagcga gggcgcctta tcggctgctc gaagaagagc gtcagttcac 1980 ctccggtgaa cacagcgtgt aggaccacca ttgtgttgaa catagcccgc cttcgtgtct 2040 aatagggctg agcatggatt tggaaggctg gcagatgctg aacgaggtcc cccgaaggaa 2100 ataggaggag acgaagaagg cggcagatgc ggcgggagcc tctatagccg aacatatcaa 2160 acacgctata gccgaacaag ccaaaaaacc ggtttcccta ggtttcccta ggtctctgac 2220 cctcgcgcaa aagctgctct acgccgtgcc cgcgactccc gtggagagca cggcctcaga 2280 catcacccca ctactcacgc agctggagat acacgtggct gaggacaaat cattcacgac 2340 tagggtccga gacatattca aagagacagt agtcacgcac aagtccgcca aggagtctcg 2400 ccggtggcta tcggagcctt cctatgggta ctggccacag caactcaact ttgcggtctg 2460 gtgcgcaacc gccggatgtg gggtgtccct aactgacccc actttcgcca cgctcccctc 2520 tgtcatcagg ggatttctaa ggtttcacgt ctacttcacc acccggagga tactctacga 2580 gctcggcgtc cccctgcctg gcgacagccc gttcacgcaa aaaggtaacc cctacaagaa 2640 ggccgctttc gagcgtctat gcatagagtt cggtttgccg cgtaagccgg acttccgatg 2700 gaaaggcggg cggaaccacg ggctaggcga cgtgtttctg ttctacccgg gggaggggta 2760 tcgcaacgtg cacgtgatcc gttgctacga cacggcggcg gacgagtacc cgagccacct 2820 caatctgttt agcgacgaag gtgggacgta caatagtggg aagcaggtgg gttacatacg 2880 caacgacgac cacgggggcg tgcaatatag ctggtttgcg cctcccaaag gcgaggggct 2940 gacaaaagca gggctaggga gactcgaccg ctcgattgag tcgttcgtct acacagtgct 3000 tggcgcgcag gtaaacgtcc gttcctccat cgcaggggcc ggtgggccgg ccatggaggc 3060 gcaggcggag ttcacggagc tgctcgaaga cgcgatcata gaaaacgaca tcgctcaaag 3120 cgtgcaaagg taccagttag ccgtgcagga ggccaaggtg agactgagtc ttggggttgc 3180 accaggagtg tggctgatgc cgagcgatct ggtgataaac acgcaaagct tcgtgggcta 3240 caacaataag ctgcagaaag ccacggactc catgaagctc ggcgcaaacg cgatcaacac 3300 cgagacaaag ccagtcgatg ctcataacat ggccggtggg catcctaggg tgcaacacgc 3360 gactgaccac gtgccgcccc ggcggcaaag cgcccctgcg aaagtgcacg cggagggctg 3420 cagctgcgca tagcacgtcg ggcgaaaaga gtgaccacgc cgccctcaag gcggggttgt 3480 cggcactcgc ggtggccgcg gcgtattact tgttccgatg actgttttgc atttgacgaa 3540 ccaagaacgc ggctacggct agaatgagca gccacgcgtt ttcgccaagg aatttcaccg 3600 cttctcctgc ggccttaaac acgaagttcg cgatgctgcc tactagcccg gggagaagct 3660 cgcctagctt tttcccgatg gccttaagcc cgttaccgac ccctttggcc acggaggaga 3720 gcgacttgcc gagcgacgtc acaatggccg cgatcgtcgt cgctacggcc aacccgatag 3780 cggtggcagt gaagccgtac tttttgaaga tggctttgat gcgctccctt agcggctttt 3840 ggttctcgag ctctcggttt tcgcgttcta gttcgtcgat ctcggacagc ctctcctcgt 3900 tgcgctcacg ggcctcttga cggcgactct ctggcgtgtt agggtcgtcg atggtctccc 3960 tgtctgtggc taccgccccc ttgcagctct tggactcgtt ctgtgttctc ctggattacc 4020 gcgtctacct ctgccacggg ccccatcgcc agcttgaagc ctttaagatc tttaacgtaa 4080 tgttggatgc ccccatcctt gttgaacagc ggatatggtt tggtccaacc tcctcctttg 4140 ccatagttgt gaacccgtat ttccgtcttc cccttccggc ttaactgaac cgtaacagat 4200 tctcgtcaag gtctgggtat tccttcctga gggactcgag accgagtctc ctcgctgaac 4260 cctctgtgat gaacgaggtt tcagcgcttg cattcctgcg gtttgcgaag ccgtcctatg 4320 cgcagcatgc gtacgcgacg acgtgctcgt cattgggatc gactccccat cgtcggggtc 4380 gaacgggatg aggggcgtcg tctcgtcgtc ccccacccca tgatcggcgg acgcacctga 4440 caaggtatcg tcaatgtcaa cgtcaacgtc acccatgatg cgtgcgcata actcgtgcta 4500 tgctatatta gacatgtcta acagtccgca ccatagccac gcgacttcgt actttatgtg 4560 catacacgta tacgatgtca gtcagcgata aactcgaccc ccagcgaaca cccagaattc 4620 ctctggggtt gaaagccgag agaactgttc accgggtcac tctcaacccg tcgacggcct 4680 ccccaggcga gacgctatat atggcggtcc caaagctatc ggagggcgtc acgctcgtgc 4740 ctggctcctt gagggtcggt ctcgatctct ccgtctcagg ccatgcgaat aataccgtcg 4800 tgaagaacgt cggccgaaat ctcgtgagcc gcctgaaaat cacgtttgca ggagaaacgc 4860 tccaggacac caaccgctac gacgtcttca aggcgtatga ggagctttac ctgtccaagg 4920 tcgagagaga ggaccgcctg gagcagggca tacagtcaga aaacatgcgc aagcttcgct 4980 ccgaggctgg cgataaagcg accagtaacg ccaaggagaa cgctctaagc gccgcccacg 5040 gggcgaggta caccatcccg ctagaccatt ctctgctgac ggaccacggc gtgctgtacc 5100 caagggcgct ctccgaggcg ctgctcttcg agatcacgtt cgcatcggtt gaccaggtag 5160 tagtcggaac cgatgccacc aaattatcct atggcatcaa aaatctagag ctggagtacg 5220 aaagcctgag ggacgacaac ctcgcccggt ctgcagccgc cgcctaccac aacggcacaa 5280 cgttcttcta cgagcaagtg aaccttcaca agaccttcgt gattagcaaa gggacggaca 5340 gcataatcaa cgagagtatc aacctgccgc gaaggtctat gagtggtctg ctgctcctct 5400 ttgtggagcc atacacggca gggactcgcg actctgagaa gttcgtgtac tccgacatca 5460 agagcgttcg cgttacaatc gacggcatgc caaacaaagt cttcagccag ggcctgcgcc 5520 ccacggattt ctggagggag gcgaaaaggc ggttcgtccg cccctaccag ggggggcaca 5580 gcggagcgcc cgccgccccg gtaatcggcc ccgggtcgtt ctatggcgat aacaagtttg 5640 ctctgtggat cgaccttcga acgacggacg acagcgccat ccatgggggt ggcctccgat 5700 tggtcaatac ccgcgacggt gtgcacctcg agataaaacg cacggcaggc ggctcgggta 5760 gcgtaaactg tcacgtgttt gtggtggccg acgcccaaat gaaccttatg aacggacagc 5820 tagagtccat acaatactga gcacatacgc cggagcggta tggaccctaa aaacgtccca 5880 tttaacgctc tcatcgtggg cccgacgtca tgcgggaaga cccaattcgt agtggaccga 5940 ctgcgcggcc ctttccgggg caagtttgac tacatcgtac tcatgtgccc tacctttgtc 6000 tacaacaaaa catacgacgg cttcggcgag gtcgacgatc gtctgtttgt catcgcacct 6060 gaggcgggtc agatcgacgt actgctgagg tttgtctcca ctctcttcga aggcactaat 6120 acgctaatca tactcgacga ctgtgcggcc tcgaaagacg ttaagaggcg ctctgaccag 6180 ctcgtcaact tggcgttcag cgcgcgccac gtgggtgtta gcgtgtgggt gatcacacag 6240 cagctcatca gtatcacgaa gccgttctgc gagaacatcg cggccctggt ggtcttctat 6300 accccgagca aggcggacat gaaagccatc ctgcatgact acggcgcgga gctttcagag 6360 gagaagatga aagagtacat gaaggtcctc aagacgaaaa gttctcgaag ttagagtttt 6420 gcttgcgtca cccttatacc atcgccctag ttgaacggta accaccgccc tagggcataa 6480 cgtatgtgca ccttagccac ggcatgatga gcgacgaata ctttgatagt cttcttgagg 6540 gggacgccgc aggcctcccg gccgtcgagt cgttggactg ctcgacgcat cctgccggga 6600 cggaaaccgg aggtgagcaa actgagatag cagacgcgag ggagaaactc gcgattctcg 6660 tagcctcggg gaagttgaga gaaatggtag gcaaggccct gactcacgac gacgtcaaac 6720 gcatgagcgc cgaggaggtg aggaagtacc agaggcgata cgagaccgct ctagccagcc 6780 tgactacaga cgccctgaca gacagctttc tgaagcttac gaccaagcta gtaggcatgg 6840 cgctgccgat agacagtgtg gtcgatcttc acaatgacct agtgtccgac tacatcatca 6900 acaacgagct ccgcacattg tgcggaagcc tgtctctacg ctacggccat ttgattgctt 6960 tagccgccgg ggtgttacac atagcgcgtc atgtggacac cgccggaaca gcaagcgctg 7020 acgcgcggag ccaacacgag gtagcagccg cggacagtgt cgagcccgcc atcccagagt 7080 agacgctcat gtgaaagctc gccccttctc ctaccacttg gtaccaagta cttggttcca 7140 agtagttgac accgcgtgtt cgcacgtcga cgcagatgga ggaacctcaa ggaagtacta 7200 gtgcccagcc tgacgaacaa tttgctcaag aacttgccca agaacctggc aaacagcatc 7260 aagaacctgc acgtacgcct gtggctgccg ccccggcagc ggcgcgcgaa tcacgagccc 7320 cgaaccgccc gcgacccgac ctcaccctgg acgagtcgaa gccggaaggc gcttggcaaa 7380 gtggaaccga atcaacagag cgaagaaaga ggcgcttcgt gtcgtcgctg cgcagcagct 7440 gccggtggcc ccggggccga gcgagcggca gggcttgcgc gccgacgatg cgccaagcgc 7500 tggcatcgca cacacaccag tcccggaaag caactctgcc tggtcggcta gctcggttat 7560 cgggctcgct ggtctcctag tgtcattgat cggcctctac acacgtaggt gggagctggc 7620 tgccgcgttc actcgtacac cagctgttaa ccagcgagct accgaaagtg ccgacggcgt 7680 gactccgccc ccagggccgc cgctggcggc cgcacagcag accaaggacc gcgttccggc 7740 gacagcgcct cgcgctcggc tgttatccat ggagtaagca gacatttaga cacgagggcc 7800 ccacccatat ccgcacgatg tcgacgacgc agcaaagcaa gatcacaaag accatcaccg 7860 acgccgcagt cataaccggc ctcgtcgccg gtatcggctg ggttgggcgc aaggtcttac 7920 gcgaggactt caccaaagac ccctccgcga acgccatgaa ctacgcaaaa atgactgccg 7980 ccgttgcagg tgctgtcact ttgaagggct accttgagga ccagaagatc ctgcccatgt 8040 agtgtactgt ggtacatgta ggccgtgtat tagactcgtg cgcgctttgc gcctgcgtat 8100 acgcatacac agcacgcgaa gtgtgcttcg cacaaacatg gcctctatcg cgattttgat 8160 tggcggctcc gtcctaaacg cgactgcatt cgttggtggc tactacctcg caaagttcct 8220 gtcggacgat gagagccccg ccttagctga gaaggagagg cacgacaagg tcctagagaa 8280 ataccaacaa gactatggac gctaccaaca gcggcgacaa gaaatcctcg attggcaagc 8340 tcaaagtcgc gagagagggg ccctcgcaaa gcagaacttc accgacaccg actacgcgct 8400 caaactctac aaccagacct ccctggagtc gatgcgggcc cccgagctgt ccgactacta 8460 cgtccccagc aaaacgcaga agaacgccga gttggcatgc ataggcgccg gcgctctcgc 8520 catcggctac gcagctagcc gcttgctgtg atgcagctgc cgtcgaaacg cgtatacgtg 8580 cgtatgcgtc taggcggcct ttttccatgc tgcacgtata cgtacgtata cgtacgccga 8640 aggcgtagca gacggcaccc gcctgttgga gactgattcc cccgtctcga tacgcacgta 8700 atggcccgcc ggaacggcaa gcgcatgtcc gacgaagtgc tcgatgcctt ccttcgtcct 8760 atatactacg ccagaggtgg tttccaggga gtgactgccc tgcatgccaa acttcccaag 8820 ggctcagcct ccatagatcg agcgcgcagg tgggtaagct cgcagcccgt cgggggctac 8880 acacagacgc ccccttctcc gactacctac gcccacttct cggagcagat accaaaccgt 8940 atccaccagt cggacctgct attcttacca accgaccgcg ggtacaagta tgccctgact 9000 gtcgttgacg ttgcttcacg atataaagcc gcccgcccac tgaggacgcg gccgtcgtct 9060 cccgcgaact cgctggcatc tatgaagagg gacctctcac atggcctaaa gtcctcatgg 9120 ttgatgacgg cacggagcgc ttgcgcagcg cctatttcgt gcgcagtact cgaaggagct 9180 tgcgtccggc aagacaaacc gcgagtgggt tactgctctg ccaatcgtaa tctcggacat 9240 gaacgcaacg aagactcgca tgactggcct tgcgcctgag gacgccataa agctgaggcg 9300 cgtgtctctc aaagccgaaa agcctcccct agaggtcccc ttggatgtcg gaacggaggt 9360 gtacatcgcc gtaaacgagg aagaccttca ggacaagggc cgacggcgag cgacggaccc 9420 gtggtggaca agcaaggcgt acccaatact aaagagggtc atggagcccg gacagccagt 9480 gttgtattac acggcgatcg cgatcgaaaa aatcctctgg tcgcgctagc gtcaccctag 9540 cgccacgcta gcgccaccct agcgtgatca gcgcttgtgc cttattgcag ctgaggcacg 9600 tgagtctgac attccacttg tagtgaccct gactgtcgtc ccgccggtcg atactgaagc 9660 attggggatg actcttggtg tacccctgaa gcagaagctg agtgccacag agcgtacact 9720 tcttttccgc gtcagcaatc atgccgagta cgtggtctac cgtcagaacg tggtgcggcc 9780 ccgtgtaccg cgtatcgctt gattcgcgct ataatgagct cttcactggg cgtagcctgc 9840 agtcctgtgg gaaccaaggc gcctggggtg ttatcggggg ggatcacgcg gactatctgg 9900 tcggcgagcc gcacgcggga aatgccggtg tacacagcat tcgtgatcaa gccctctaag 9960 ctgtggtcta tgataaacag acgtcttggg ttctggatgg tcttgccctg cacccggtgg 10020 actgtccccc agcccgcgta tttccactcg aggggaagcc cgttaaggac cacgccgaga 10080 gggacctcga ctaccgtgcc tttgtacgcg tcgaccttct cgcccctttt gcctggcacg 10140 ggcaccggcc gtccttgctt gcgataacga tgcgcgacgc taggatcggg gtcaaagcgg 10200 atggttgctg gcagtcgggg gtagtttttc ctgtggtgct ctaccaatcg ctgctggaca 10260 agggccccca tctttttggt cgagcacacc cacatatcgc ttgggtgggc ctgctcgatc 10320 gccgcgtcga acgccacccc atcccactcc tctcgaaaca cctcaagctg ttgggagtct 10380 gactgacacc aaatccggcc ctttatgtcg tggagcctgg aggagggggc ggcagagccg 10440 cagtcgcatg tactgtacgg ctttccgcag tcttcacaca ggcagcggta gttggactcg 10500 aaccagcgga tgttcccttg tgcccactcc ttgagcatat cgtgaggccc ctctttatct 10560 ccccagggcg ggacctgccc atagtcgcca caacacacta cctgacacgg ccgcgtggcg 10620 agatacccta ggatggcgcg cagcacttta gtctgcacct tacagcactc gtcaatgatg 10680 attatttctg caagacggtc gagtttgtgc cccagctcgg aaggtctcca ctcctctatc 10740 ggtttctccg ctggtatgca gaggtagtgg tggtaggttt gagccttcac cgcgaggcgc 10800 gggttgttgc gatggtcgtg ggcgaggtcg ttctcggggg tgagcaccac agcgttacgg 10860 ccacggaaca tgctcaccgc ccactcggtc ttccccgatc ctccctggct ggctagatac 10920 atcctcgcag aggttgcggc cacaagatcg cacggcagac tcggcgcagt gcttggctcc 10980 ctagccaagc accccgacct cttcggaccc caagccgcct cgggccgcca ctcgtaccca 11040 ggcctcttgt ggcgccactc tccatacctc ggatttcgct ccacgagcct cacaccactg 11100 ggcaccgcct ttgcgtatat ggcatctgtg cacactcgga ggacgtcttc gcgagggacc 11160 gcctcaacat gcgtcgcaac gctatgtttg tgtacgccaa gacgaaggcc ctgatgtggt 11220 accattgtta gcgccggact ccgtctttgt attggatcag atgagccccg tcggcatgct 11280 cgaagttaag taagtggtcg gtgcccgcaa ggaggtttgt cagatacgcg gcttcctcac 11340 ggtcgcggac tacgaccgag gactcgtcgc catggcgagc gcacttgcct acgaagcgga 11400 cagcgagatc tcgaccctgc gagtcttcgc cgccggggcc ggagtggggg aacttgatgg 11460 agtccttttt tccgacgcta tacaacacct ccctcgccgc ggccatggcg aggtcacccg 11520 agtctagcag gtccttgagc tctggcgtgg tgatccagcc ctcgttttgt tccaagtgct 11580 gccctaccct cccggaagtg tagggatggc aggcctcaga gaacccccac tcggtcaact 11640 gaatggcccc ggtcagttga agaacctcgc tcaatggccg tcccgcaaca tccgcgatac 11700 gatacacgtt cgtagggaag ccgtatttcc gtaccagatc aatggcgtcc gaggcgccgc 11760 cgaagacact gtcctcgcat cctaggtacg ccgcacgcat gtcgatgtgc tcatgaggct 11820 gcgcccctaa gttttccctg ctattccaca ctttggactc aacctgcgcg gctcgccaga 11880 cgtccctgta tttaggagcc gttggcctga tgttttctct ttgggtccac ttcttgaagc 11940 gataccctat tgcgccgccc atcgagtgcg tagcttcgat gtactcttgg taggctgggt 12000 gatcatcagg gagccactga ggatcatgtc cagtctcgtc tgtaaacgcc ctgtcgatag 12060 cccatccgtc ttgtcccgat cggtacagtt tgccttcgtg cgtgactata acacgcccac 12120 acagccagac cctcgtgctt ctggggatcg ccctctttat gaagcggatg agcacctccc 12180 gcaccttcgc ctcgtgcgtt tttgcggcgg cactggtagc gcgaggcgct gcttctccct 12240 gacataacga acgaagctcc ctctcaggct cgaagtctag gccgtggacg ctcgcgatcg 12300 caggtggttc agtcggaagc tccacccagg cgtggttatt gtggcaaggg atggtgatcc 12360 tcgtcttagt cccgtacttc cccgagtccc acaggacgtt accaagggcg tccacggcta 12420 ctagctttac ctcgagcttc ctttccatct caaagaggtc ttctttggtg caccccgtgg 12480 tggccagctt cttgtcaaat cgctcgagga tcttgcctcg tgtcttggtt agaccaaggg 12540 agcgcgaggt gccgcgattc ctcaagaagt cggcaacata gctcacaaca cagttaacga 12600 aggcgtcact cccctctcgc acaaacattg gcccaggctc accattttgc tcaggtaaag 12660 ggcgaagctc gtatctcacg tagacgaggt actcgactgc gatttggccc cccttttgac 12720 taacaaccca ccgatcttgt gctccgagcg cccttcctcc tctgtgattg gcgccaatgg 12780 ctctgcgggg gccttaccaa cgaccgtgaa gagtctgtaa cgctggtcgg gatctaccat 12840 ctcgagcacc agcggaagca ctgcgttcgc ccgcagagac tctcgctcgt gcgagaccca 12900 ccacaccgag ccgtcgtcat tagcgtcagg cccccgcata accggcttca gagcaatcac 12960 acctgttcca ccaagatctc gcatctcctg gtaaacactg gcgcttatgt ctcggccccg 13020 tagagtggca tccacgcttg ggaaccgaag atgggcgccg ccgacgaaga gagagtagta 13080 cgtctcgggg tctaagctct ccgggccctc ctgccgccgt cccggcagca gagggtcgaa 13140 ctcgcgccag acctcctccg tccgcacctt ctccggtacg agcggcttaa gcagcctgtg 13200 tttgacatcg tcggggatgt cctcgtccag gatgttttgg accagctccg ccagtacggc 13260 gggcgcctct ttgtcacgca tgctatcgag aatctcctct atataagcgt ccatgtttgg 13320 gtataccctg tgccacccaa tctccaactg cccttatcac aaccggcggg atgagtgccc 13380 gggtatgacc cgcgccaccc aatctctaat tgcccgtacc acagccggcg ggacgagggt 13440 ttgggtgcgc cttgcgccac ccaaacccta accgcccgaa ccgcgggtcg cggtgtcgga 13500 cagggcgtct gggtgtgcat tgtgccaccc agtatcaatt gcccgtgccg cgggctgcga 13560 tgtcagacag gacgagtgcg aaccatttcc gagcgcgcct ctcaacgcca cgcatcctct 13620 gccctacacg attcgctcag caggggcggc acaagcgcgt ctccgaccga gtccctacgc 13680 cgcagatcct acacggcacg gcgaggggga tgcccatacg gagcctttgg aggtgcacct 13740 tgcagtaggt gtccatgcaa cttcggccgc acgtgtttgc gtggccggcc ttcagccacc 13800 cgaagtaatc ccttccgtac ctcatccttc gaacgctcgg tacaccacag gacagacgaa 13860 tgtctaattg caagaccagc gcctaattaa ttatttatga acgcgaaaca cctgcagccc 13920 taatcgattc atgcacgcga aacacctgcg gccctaattg attattcgtg tacgcgaaat 13980 ctattttgcc tacattagct tttgccgatt gtttatgtac gtgaaatcgt tttggcctac 14040 attagctttt gccgattgtt catgtacgtg aaaccgtttt ggcctacatt agcaatcgcc 14100 ccgtacgcga aaccgatttg gcctacatta gcaatcgcca aaagcttatg tacgtgaaat 14160 cgattcggcc tacattagcg atcgccgatt gtttatgtgc gtgaaacatt atacgctcga 14220 tatatagaga cggggctggg aggcccggag gggcgattcg cgtctcccag gcccaagacg 14280 ggagacgggg ctgggaggcc cggaggggcg atccacgcct cccactagtt tctctgaaac 14340 cccccagtcc ccccc 14355 // ID DNA-TA-6_NV repbase; DNA; NEM; 893 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-6_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-893 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-893 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-893 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 893 BP; 280 A; 213 C; 146 G; 254 T; 0 other; cagtcgaagc tctctgagcg accgctctcg taagcgacca gctccgataa cgaccacgat 60 cacgaatcac cgattgaatt gtcacacaaa ctctgtaatt ctaagctctc gtaagcgacc 120 aacttatcgg tgcgaccagc tccgttaacg accacaattt caaaccacca actgagattt 180 tcttttattt ttaagctctc gtaagcgacc acaatgattt ttggctttac aacatcagtc 240 aacacctgat aaacatcata tccaatgcat gctgaaatca catataaagc ggaaatgttg 300 taatgtttca caaaagctgc ctttccagta ggcaaccatt aaagaatttc ataatttcaa 360 ttttctaact tcaatttcaa ccatgggatt gacatttctt tgtctccaga aaatgtgtaa 420 atgcaaggaa tctctagtcc attgccagct ccacgattta tcctttttcc agttacaata 480 gccatccact tgtttgttgc acgctttaga aatcggctaa caaaagacgc catgcgatcg 540 tcgtagacgc agaagatatt ctcatgacga aaagcttaag tcgtcgatat aaacgagcat 600 aacgagctac tttgcgtaga attaattgct attaaataaa acaactcact ctcatgataa 660 gtcaaatacc tagttttaaa atcaagcaat aaaccaaaat attacagcgt tgttattatc 720 acgataactt ttagattcca ttttaattaa gctcccgtaa gcgaccaaca cctattgttc 780 aagtttttgg cgcccagtgg tcgcttatga gagcaagctc tcgtaagaga ccagctccgt 840 taacgaccac aattctcagt tcccaaggtg gtcgcttacg agagcttcaa ctg 893 // ID Mariner-1_NV repbase; DNA; NEM; 2919 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-1_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Pogo group; TA TSDs; Mariner-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2919 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2919 RA Kapitonov V.V. and Jurka J.; RT "Mariner-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 609-609 (2007). XX DR [2] (Consensus) XX CC The Mariner-1_NV belongs to the Pogo group of the Mariner CC superfamily. This transposon encodes a 467-aa transposases (two CC exons). XX FH Key Location/Qualifiers FT CDS join(1031..1741,1923..2612) FT /product="Mariner-1_NVp" FT /translation="MAKRNRTCIDLNRKIELLNYAKDNHMHGVRVIAAKYG FT IGKTQVSKILQNKETILASYENNNGHIKIKRIRTGKYANVNDAVWDWYQMC FT RNFNIPISGTMIQEEVMIIAERLGLNEFTGSNGWLEKFKRQHNIGQMAVSG FT EEAGVNPETVESWKERAREITRGWDAKNVWNMDETGCLWRGLPEKSLNERG FT MRCSGGKKSKQRNTWAFFVNAAGEKEPPIVIGRSENPRCFKNLPNKQNTAS FT KTQPLDSGIIANWKIHYKKRMLRFICSKVSATITASDIVKSIDVLMSIEWG FT KQAWDEVQESTIIKCFKSTGLYPDTEPVDDAPFEGEDLVQHEQIDTMLAKL FT GAPCTAQEFLDIDANEPTCQLTLDPTRADWRDQAREILFDQDDMTQEEDET FT NSDDNEPDVQIVGTKETTLTLAEATLHGERLRQFAQDKGHEELSLLFTRAN FT DILYSLQLAGQKKQTTVDSFLK" XX SQ Sequence 2919 BP; 911 A; 590 C; 632 G; 786 T; 0 other; cagtggaacc tctataaacg gacctctact aagcggacac cctctattca gcggacacca 60 accaaagtcc cgattttttg ccatttaaat tcagtaaatg atacctccat gaagcggaca 120 cctctattaa gcagacgcag acacatatca cggtcctgtc ttaaacaatc tctgtatttt 180 ttacctttat tcagcggaca ccgtggttac ctttttcgag aattcttata ataatttcat 240 ggaacaggcc aaaccacata accattaacg atacactttg cttagaaact ttattttaca 300 aaaagtaagc aaaatacgct gagacttgta aagctcgaag tgatgacaaa atggtcatta 360 atgctgcttg gttcttgtgt tatgcaacct caaacccttc tttttgtaat ttatcttgca 420 gccatgttgt tgagaaattg tctcccttga aaataaacat ggctggaatc tcgaggccgt 480 aaccgccgcc tctgttgaca cacttgccag ttattttaag tctcgccgtg taatgtgatc 540 gcttcaaata tctagataac caaagggtca taaatcttgg tgcatgccca acaacctcca 600 tatcactatc tcttgtctca tttggtgaga ataaggtttg tttttgcgac ttctaccccg 660 ccgggatctt tttacggacc actgctacag catttgaatc ttctttgtta aaaggttcac 720 gtttcaaatc gtactcttcg tcgatacttg gctcccataa ttctttgtat tcgtgatacc 780 ctcggatgaa tgacggtact taaaaatctt cattagacat attagagggg atttaagatt 840 accatactct gtcaaagaaa gacactaacg tgcttcaaca aacgacgtgt gttgtcctca 900 cgcggttcct ggcattgtat tttaatagca acaataatgc cgcgtgctat ctgagctgtc 960 aaaaaggtgt ttgcaaaatt cccaacgccg gatggcattt catgtgaggt ttaacttgtt 1020 atttctagcc atggctaaac gaaatcgaac atgcattgac ttgaatagaa aaatcgaact 1080 cttaaactat gcaaaggaca accatatgca tggtgttcga gttattgcag ctaaatatgg 1140 tatcgggaaa actcaggtat cgaaaatttt gcagaataag gaaacgattc tcgcgagcta 1200 tgaaaacaac aatggtcata tcaaaattaa gagaatcaga acgggaaagt atgccaatgt 1260 aaacgatgct gtttgggatt ggtatcaaat gtgccgtaat tttaacatac ccatctctgg 1320 tactatgata caagaggaag tgatgatcat tgctgaaaga ctaggtttga atgaattcac 1380 aggatcaaat ggatggcttg agaaattcaa gagacagcat aacatcggtc agatggcggt 1440 gtcaggagag gaagctggag tgaacccaga gacggtagaa agctggaaag aaagggccag 1500 agaaatcact agagggtggg atgctaagaa cgtttggaat atggacgaaa ctggttgctt 1560 atggagagga cttccagaga aaagcttgaa tgaacgaggc atgcgttgta gtggcgggaa 1620 aaagtcaaaa caaaggaaca cttgggcatt ctttgttaat gcagcgggag agaaggaacc 1680 tccaatagtt ataggtcggt ctgagaaccc gcgctgtttt aagaatctac cgaacaagca 1740 ggtattttga taacgacaaa gcatggatga gaactgaaat tatgcaggaa gttctggcca 1800 agttgaatcg gcgactgaag agggaaaatc gaaatatcat gctgtttatg gacaatggcc 1860 catgtcaccc gccctctttg aaaaatacct attccaatat caagataatc tttcttccga 1920 agaatacggc ctcgaagacc cagcctttag attccggcat tattgcaaat tggaagatcc 1980 attacaaaaa gcggatgctt cgatttatct gtagcaaagt ttcagctaca ataactgcgt 2040 cggacattgt gaagtcaatc gacgtgctca tgtcaataga gtggggtaag caggcgtggg 2100 atgaagtaca ggaaagcact atcattaagt gctttaagag cactggtctt taccctgata 2160 ctgaacctgt agacgacgcc ccgtttgagg gagaagacct tgtacagcat gaacaaatcg 2220 acaccatgtt agcaaagcta ggtgctccct gcaccgcaca ggaattttta gatattgatg 2280 ctaacgagcc aacttgtcag ctaactttag atccaacccg tgcagactgg agagaccagg 2340 ccagggagat tctatttgat caggacgata tgactcagga ggaagatgaa acaaatagtg 2400 atgacaatga acccgacgta cagatagtag ggacaaagga gacgaccctg acattagcag 2460 aagctacatt gcatggtgaa cgtcttcgtc aattcgccca agacaaaggg cacgaagaac 2520 tgtctcttct ttttactcgc gcaaatgaca ttctttattc tttacaatta gcaggacaaa 2580 agaagcaaac tacggtagat agttttttaa aatagggatc gcagtctcta ccttttgact 2640 tcatgatttg taacttcgtg tacacttcgc cattgttttg tttcaggtgt tatacagtac 2700 accaaatgct gtagacgatc gcgtctcaag caatatgaaa actgcgcaaa aaatgtacgg 2760 agactgccag ttatgcactc taaggtagtt aaagtcaata aaaaatgtgt ttactatcga 2820 atttgaccga aaaaaagtcg acctccatta agcggacacc tctatataac ggacactttt 2880 cacggtcccg agggtgtccg ttatatagag gttccactg 2919 // ID Helitron-N5A_NV repbase; DNA; NEM; 3896 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Helitron-N5A_NV non-autonomous DNA transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW AT target site; NVREP372; Helitron-N5A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3896 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3896 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3896 RA Kapitonov V. and Jurka J.; RT "A subfamily of Helitron-N5_NV non-autonomous DNA transposons RT from the starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~95% identical to the consensus. XX SQ Sequence 3896 BP; 1158 A; 718 C; 710 G; 1310 T; 0 other; tagcggagcc agcgcggccg caggccgcgc gcggagctcc ataggtatag aaatatggta 60 tagctatgcg acttggtttt gtggtcatcg cgcgggtatc ctgtggtgtc acaactccat 120 ccagtcaatc gcgcaactcc caggccccct cggtcttacg tttttacgta tttttatttt 180 ttttaccgcc atcaaagttc gtatgttcac agcaaaaaag gcagattgaa aatagtattt 240 aatgagaaaa tatgcggatt caaatgggct gaaatctttg aggaaccgtt ttgtctgaag 300 tacgagccga tagtaaaatc tacccgagtg ttcgtgaatc ccgtccgttg cagcagcaaa 360 aagaggacta cttagaggct ctacactacc attctaataa tattccttca cgtctatatc 420 tatggagatc tataaggaga tcctgagaag aaagggcctt ggattgatgt atgttttcag 480 ctataaaaat aattcacttg tgtcgacgag tttcttgcta gcagaaagtc gacaagttca 540 cagtttacaa caaaaagcga acacaaccac acaagcgaca aacagaaagc gacaaaaaac 600 actgccaagg tgagttttga acgacggttt gtattgagaa tatcacagtt atttttcttt 660 tattgttgtg cttttataat gctcgtttct tcgtgttttt ttttccaaaa ccaatcgctc 720 aagctaaaac accgtaccag tttgacgtca agatgtcata tcaaagtcat ctatccctgt 780 tttgattggc ttaaatacca tctacttgaa ttccgatcgg cttataattt tggagtgcac 840 ttgagtggtt ttcattccac tggcaatcgc catgaaaatg ttaaattcgt aaatacttac 900 acgttctata aattcaggca tatattcctc acggtaagta agaatttaac gacagaaata 960 cgtagtagtc tagttactgt ttcaatgtca cttagcttgt tcgatttata catttgttta 1020 tagagtttgc tttgagaatt cgtggtctaa atcaaacaat ttgagcataa caacatcctt 1080 tgatattctt cgttctctct atactttatt gactgcgttg agatatttaa taaaggctga 1140 caaatatcat cctgtcattt attgctaaag aagacctttc ctgtctttat attctgtgta 1200 tttagtcttc tcgaagatac agcaactttt tcaacattat cataactaca aataacttat 1260 atatactata tatacttact atatattaac tttacagtta caagagaatt ttctcatcga 1320 aaataaaaac acaaaatgca acccctatta cctatattct ttttgcttag cttatattgt 1380 ctgcatcttg cataactatc tattgtgttt atttatttat tattcaaata gttgtgaaag 1440 ttaataaggt tataatggca tgatgaaaat gttgttttga aagaaaaaaa tacttataat 1500 tgttttcact tttatttagg taaaaccaac caaggactac ccgagggcca tgattgatgc 1560 tgaaggctgg gaggcatgag aataggcaaa tgtcttaaag ataataaagt aggggatttc 1620 ttactttgat acagcagtaa atgtgaaata ggctttttta aagcacttgc cctcaatgat 1680 aaatctgaaa acattttttc tatcaaccta aagataatga ggaaagggga aatgttagga 1740 gagtgctcaa ccaagttgtt gcattactga tgagtttttt tatcaaagct atagtccaat 1800 ttcttccttt tctctctctc tctctctttt gctgtttcct ctctgcaccc taaataaatt 1860 aaaataggta ataggtttga aattagacat tttcaatcaa tttgttctcc tccttgcatt 1920 taattttgga gtagcattag catatgtgga tccatggttt ctataaaaaa aacagcaggc 1980 cccatcctac agggtgggtg caccaatgtc taatgcatga ctggaggtat gtttgtgaat 2040 tttaatttcc ttggtgatgg agtatcacca gtaataagtg atatattaat cttccatatg 2100 gcacctgaag tgtatctaac tgtatcattc tatctttgga atgctgttgc atccatcatt 2160 tgtttctttg caagggcaaa gctggtcaga atgtagcttt gatacaagtg tacattaatg 2220 aaacttctat caagggaagg gttttttatt agagcaaggt ccgggggggg gactctccag 2280 aaagatagac gggggtgctc gacctatctt ttatggtata atattcttac caacttctat 2340 ctcttagggt gtgttttagg atttttccga ttctgctatc ttttaggggt tttcacgccc 2400 ggggaggagg atttttccga ttctgctatc ttttagggtg tctcacgcta agtggtggcc 2460 caatcgcttg aaatgtattt tacaataaac cacaagtcaa ctgatcagtt aatactttcg 2520 actttattgt cggtaacata acaatatagg atccgtcagc aaattaaaac cagcattgtt 2580 tttttaatgc tatctctcag ggttaaaaat tcctctgacc acacccaatg tgctatctct 2640 taggggtaag aattgttgtt gaccatgccc ttagtgctat cccttagggt taaaattgat 2700 tatgctgtcg agcacccccg tctctcaaac tcccgtttct caaagtcccc cccccacctc 2760 ccccctggga gcaaggtact taaattatat aaagacaaca tcaaacttgt gctttttcaa 2820 taataaatct gtaaagaaaa cagttttata tcaaacctat aggtaaagag aaaggggaaa 2880 atgttaggaa tatgctcatt taagctatta ttgcattatt gttatatatt ttttaaagta 2940 gagtcacatt ttttcaaata gagtcattca tttctccctt tttcttctcc ccattgactt 3000 tttgttatat ttatttctct ctaaccctaa cataggtcaa tgaacatggt ttggtttgaa 3060 attagaaatt ggaattaagc actttcagta ataatttagg atttgcctcc attgcattca 3120 tttttgagta gccagtatgg gtggatccag ggtttctaaa accaacaggc caatgggtgg 3180 gtgcaccaat atgtaatgca tgacaggagg tatatttgtg gagtttagtt tcaacacatt 3240 cttctgaata atcagttgtg gtacatgaaa actacagtag tgggtctatg gggggagggg 3300 gggtgggggt ttaaacctcc ccttgggctt tcttttttta ttgttttcag tgtatctttt 3360 cattccaaaa tcgttacgaa ggtaaaataa tgacgaaaat ttttgggcca aatccccccc 3420 ttggcaaaaa gctagatccg cccctgaact acagtatggc atctaaatct ttggaatgct 3480 gttacatcct tgatatattc ttcacaaggt caaagcttgt tagaatggtg ttttgataaa 3540 aatatacata gtggaacttc tataaaggga aataagaatt gaccattaga ctcttgaaaa 3600 aacattctcg tcaactaaga caccttgaac tttgacagcc tttttcacac caagttttag 3660 tattttgtta actttcatac tgcatattta atattattga atgagtgctt gcttgatcca 3720 tttggagggg ccaatacaat tcataattac atggcagtaa aatttgacat atttttaatc 3780 tcattaaaaa aaacattcta gagacaccaa gatcccctct aaaactaccc ctatcagtca 3840 acacaaaaag gtgttaaatg ctggctccgc ttttaggcag tgcctaaatc tatata 3896 // ID Copia-4-I_NV repbase; DNA; NEM; 4134 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Copia-4_NV autonomous DE LTR Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4-I_NV; KW Copia-4-LTR_NV; Copia-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4134 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4134 RA Kapitonov V.V. and Jurka J.; RT "Copia-4_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 386-386 (2007). XX DR [2] (Consensus) XX CC Copia-4_NV is a family of recently transposed retrotransposons. CC Copia-4-I_NV is the internal portion of Copia-4_NV and is flanked CC by the Copia-4-LTR_NV long terminal repeats. It encodes the CC 1295-aa polyprotein composed of the protease, integrase, reverse CC transcriptase and RNase H domains. XX FH Key Location/Qualifiers FT CDS 151..4035 FT /product="Copia-4-I_NV_1p" FT /translation="MRDATDDGRKALKILREHYAGTGKPRVISLYTELTSL FT VKSPDESVTEYIIRAEKAATALKNAKETVTDSLLIAMVLKGLPESFKPFVV FT VITQSDKQQTFTEFKVALRSFEDTEKSRTTEMDSVMKTKNVSSEQGRQHKP FT RRKGDITCFKCNQQGHIARNCTAPEKRRSEMWCSTCRSATHNDSACRRQRG FT RQTDKVNQVTEKEEDEEEDDHSFAFKVRKVKAGSSEADTGKPKSLLVDCGA FT KSHIITDKSKFTRFDTEFNPSKHFIELANGTRAYNIALMRGDVEVTLLDVN FT GNPKKATLTKALFVPSYPQDIFSVQAATEKGACVTFQPDHAELKYKDGTIF FT NIEKDGRLYYLNVYDKNVKCDSVNYTRDIKEWHAILGHCNYDDILKLEAVV FT DGMKVSGKGSVKSGDCSTCILGKLADSRNRKPDARAKAPLELVHTDLAGPV FT DPIARDGFRYCIVFTDDFSGAETVYFLKNKSDATRATERFLADMAPYGKVK FT TIRSDGGGEFISNEFESLLLRNGINHSKSCPNSPHQNGTAERHWRTLFEMG FT RCLLTQGNVSREFWPYAVSAAAYIRNRCFNKRLQQTPYQAMTGRKPNLSNM FT RVFGSECFAYKQMKKKLDDRCTKGVFLGYDKGSPSYLVYIPEANKVRKYRV FT VKFPTKSVVEQQTQTDGLLPGNEEAMLFQHPTTGNHDPVNASIPCVDGPQE FT APNEEVEGPTGEAEGEPCESQTPPETRYPRRVRRPPIHLEEYVTEGEIESN FT QVMSSVDYCYKISSFPQTYQEAMESQESENWRGAMKEEMDSLLVNDTFSLT FT NLPEGRTAVGGRWVYTIKEGADGDTFKARYVAKGYNQVRGIDFQETFAPTA FT NLTSVRVLCQLAAQHNLILHQMDVKTAYLNAPIDCDIYMDQAEGFEVPSSS FT GNERLVYKLNKSLYGLKQSGRNWNTVLHNCLVENQFVQNSVDHCVYKKEIG FT DKVVYMLIWVDDIIIAASDMGIMLETKQILQERFRMKDLGRLSYFLGIEFE FT QGEGFVKMSQRKYVSKILERFQMSNCKPRATPSEQKLELCDQSSVDPRLYR FT EAVGSLIYAMTCTRPDICWVVTKLSQHLSNPQQSHWTAVKHVFRYLKGTME FT YELCYRKSSEDLSLLGYSDADWASSTDRRSTSGYCFSLNDTGPPFYWKSKK FT QTSVALSSCEAEYVALAYAVQESLYLTQLLSDLKESCQPVTIFEDNQGAIA FT LSKNPVNHQRAKQIDIRYHFIRSVQETGKLTIKYCPTTEMVADLMTKAATS FT KSYRSSSSIFLDRSQSYFCNHFWFIISFISFFIL" XX SQ Sequence 4134 BP; 1256 A; 787 C; 1035 G; 1056 T; 0 other; ggttatgggc ctaggcgaga tgccactgga aggtacgggc gccttctttt cgatgtagat 60 gaaagaaaat acgaacaatg ggagataaag aacgaagaag catttgccga gctgatacaa 120 ttcctcgatg acaagagcct gtcattagtt atgagagatg caactgatga tggaagaaaa 180 gcgctgaaga ttttacgaga gcattacgct ggaaccggga agccacgtgt aatttcgctt 240 tacaccgagt tgacgtcgct cgtgaaatcg cccgacgaat ctgtcacaga gtatataata 300 agggctgaga aagcagccac agctctcaag aatgccaaag aaacagtgac agatagccta 360 ctgattgcga tggttctcaa gggtttgcca gagagtttca agccatttgt tgttgtcatc 420 acccaaagtg ataaacagca aaccttcacc gagttcaagg tcgctctcag gagttttgaa 480 gacaccgaga aatccagaac aactgagatg gattccgtca tgaagaccaa gaatgtttct 540 tccgaacaag gtagacagca caagcccagg aggaaggggg atatcacatg ttttaagtgc 600 aaccaacaag gacatatagc ccgtaattgc acagcccccg agaagcgaag gagcgagatg 660 tggtgcagta cgtgccgttc tgctacccat aatgattccg cgtgccgcag acaaaggggt 720 agacaaacgg acaaggtgaa ccaggtgaca gagaaagaag aagatgaaga ggaggatgac 780 cactcatttg cttttaaagt gagaaaagtg aaagcaggtt cgagtgaagc tgatactgga 840 aaacctaaat cacttctggt ggactgtggc gccaaaagcc atatcataac agacaaatcc 900 aaattcacca gatttgacac tgagtttaat ccttcaaagc acttcatcga gttagcaaat 960 ggaaccagag cttacaatat cgcccttatg cgaggagatg tagaagtcac ccttctcgac 1020 gtgaatggaa accccaagaa ggctactcta acgaaggccc tgtttgtccc ttcctacccc 1080 caagatatct tctcagtaca agctgcaaca gagaagggag cctgcgtaac tttccagcca 1140 gaccatgctg agctgaagta caaggatgga actatattca atatagagaa ggacggtaga 1200 ttgtattacc ttaatgtgta tgataagaat gttaagtgtg attctgttaa ctacacacga 1260 gacattaagg aatggcatgc aattctaggc cactgtaatt atgatgacat ccttaagcta 1320 gaagccgttg tagacggaat gaaggttagt ggcaaaggta gtgtcaagtc aggagattgt 1380 agtacctgca ttttaggtaa gctggcagat agtcgtaaca gaaagccaga tgccagagca 1440 aaggccccat tagaattagt acacacagat ctcgcagggc cagttgatcc gattgctcgc 1500 gatggtttta gatattgcat tgtttttact gatgattttt caggtgcaga aacagtgtat 1560 ttcttgaaga ataagagcga cgcaactagg gcgacagaga ggtttttggc ggatatggcc 1620 ccgtatggta aagtgaagac cataagatct gatggaggtg gtgagttcat ttcaaatgag 1680 tttgagtctc ttcttttaag gaatgggatc aaccatagca aatcgtgtcc aaattcccct 1740 caccagaatg gcactgctga acgccactgg cgaactcttt ttgagatggg aaggtgccta 1800 ctgactcagg gtaatgttag tagagagttc tggccttatg cagtaagtgc ggctgcgtac 1860 atacgcaatc gatgctttaa taagcgtcta cagcaaacgc cgtaccaagc catgacaggg 1920 cgcaagccta atctctctaa catgagagtt tttgggtctg agtgttttgc gtacaaacag 1980 atgaaaaaga aacttgatga cagatgtact aagggagtat tcctgggata tgataagggg 2040 agcccgtctt atcttgtata tattccagag gccaacaaag tcaggaagta tagggtggtg 2100 aagtttccca caaagagtgt cgttgagcaa cagacacaaa cagatggctt gttgccaggc 2160 aacgaggaag ccatgttgtt ccaacatccc actactggta accatgatcc agttaatgcc 2220 agtattccat gtgtagatgg cccacaagag gccccaaacg aggaagtaga ggggcccaca 2280 ggggaggctg agggagagcc atgtgagtct cagactccac ctgagactag gtatcctagg 2340 agggtaagaa gacctcctat acaccttgag gaatatgtta ctgaagggga gattgagagc 2400 aatcaagtca tgagctcagt tgactattgt tacaaaatct catcttttcc tcagacatac 2460 caagaagcta tggaatctca agaatcggag aactggagag gagctatgaa agaggaaatg 2520 gattctcttc ttgttaatga tactttcagc ctaactaacc tgccagaagg tagaacggca 2580 gtggggggtc gctgggttta caccatcaaa gagggtgctg atggtgatac cttcaaagct 2640 agatatgtag caaagggcta caatcaggtg agaggaattg atttccaaga aacctttgcc 2700 cctactgcta accttacatc tgtgcgagtg ctatgccagc tagcggcaca acacaatctg 2760 atcttacatc aaatggatgt gaagacagca tatttaaatg cccctattga ttgtgatatc 2820 tatatggatc aagcagaagg ttttgaagtt cctagttctt ctggtaatga aagactagtg 2880 tataagttga ataagtcact ctatggctta aagcagtctg gtagaaattg gaacacagtt 2940 ttgcataact gtttagtaga gaaccagttt gttcagaact cagttgatca ttgtgtatac 3000 aagaaagaga ttggtgacaa agttgtgtac atgttgatat gggtggatga cattattatt 3060 gctgcaagtg acatgggcat tatgttagag acgaagcaga ttctccagga gagatttcgc 3120 atgaaagacc tggggaggct ttcatacttt ctgggcatag agtttgaaca aggagagggg 3180 tttgtgaaga tgtctcaaag gaagtatgtg tctaagatcc tagagaggtt tcagatgtct 3240 aactgtaaac ctagagccac accctcagag cagaaacttg aattatgtga ccagtcaagt 3300 gttgatccca ggctatacag ggaagcggtt ggtagcttga tctatgctat gacatgcact 3360 agacccgata tttgctgggt tgttacgaag ttgtcgcaac atctttctaa tccacagcag 3420 agtcactgga cggcagtgaa gcatgtgttc aggtacttga agggtactat ggagtatgaa 3480 ctctgttata ggaagagtag tgaggatttg tctctactgg gctacagtga tgcagactgg 3540 gcatcctcga cggacaggag gagcaccagt gggtactgtt ttagtctgaa tgatacaggc 3600 ccaccttttt actggaaatc aaagaagcag acatcagtcg ccttgtcatc ttgtgaggca 3660 gagtatgttg cactggcata tgcagtacag gagagtttgt accttactca gttgctgagt 3720 gatttgaaag agtcttgtca gccagtcaca atctttgagg ataatcaagg tgccattgcc 3780 ctatctaaga atccggtgaa ccaccagcgc gctaaacaga tagatattcg ttatcatttt 3840 attcgctcag tgcaggagac aggcaaatta accattaagt attgccctac aaccgagatg 3900 gttgctgatt taatgactaa ggcagctaca agcaaaagct acagaagttc aagcagtata 3960 tttttggata gatctcagag ttatttttgt aaccattttt ggtttattat ttcatttata 4020 agctttttca tattatagct ttagttttat catgtatagg aaagcatgtg ttactgttaa 4080 tgattgtaaa ctgattcatt agtacagaac tagcactatg agatcaagtg gggg 4134 // ID DNA-5-14_NV repbase; DNA; NEM; 343 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-14_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-343 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-343 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-343 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-14_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 343 BP; 110 A; 68 C; 73 G; 92 T; 0 other; caggcccgta gccagggggg gttcgggggg ttcggacgaa cccccccacc cggcttgaag 60 gtccgctcag agcaaacaaa aaatatataa cgtttggctg gatataccgt gcacatcaat 120 atgtctttaa aatgactata aaaatctttt tataataatt atctttatta ttatcgctat 180 atgttaaaaa gcaccctatt aataacattt taaatacaag attgaattta tttgaagtat 240 tgattgccta atgtaataag gcgaggagag gggtataccg gaaatttggt ccgctgaaat 300 ggaaaaacga accaccccgc tcaaaatcct ggctacgggc ctg 343 // ID hAT-8_NV repbase; DNA; NEM; 2678 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-8_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; hAT-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2678 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2678 RA Kapitonov V.V. and Jurka J.; RT "hAT-8_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 593-593 (2007). XX DR [2] (Consensus) XX CC Terminal portions of the transposon are not known. The genome CC contains only a few copies of the transposon. XX SQ Sequence 2678 BP; 747 A; 580 C; 622 G; 729 T; 0 other; ttttgttccg tggagaagtt ttcagacgaa gaaaaactgt atctaataaa aaacagggtc 60 cctcataagg ctttcaaacc gcctccaata aagggtaaag atagcagaag ggaaaatcct 120 actaagaggt actttcctca gggaattctc aagaaatacc attggatcta ctactccaag 180 caacataacg gaggagcgtg cctgtcctgc atccttttcc cccatgatgg aaagtttgac 240 tcaactcgag cagaggtttg ggttgcaagg ccacataagg agcttaggaa gattcatgct 300 gatgccaaac agcacgcgaa gctccaaagc catcgcctag cctaagccat gatggatggg 360 tttgtcgaaa cccaactgaa ccccgagagg agaatcgatt tgcgaatgaa tgcgagtcaa 420 agggaacagt agaaacgcaa ctacttctcc cccctaagtc aaaacgagct gcttgactgt 480 ttacgagaag tagaggaaat tatcatctca gaaataaaag cacaagagtt tggtgccaag 540 tactgcatta tagcagacga ggtcacggat atctcgaact gggaacagtt aggtataaaa 600 gtccacgttt gtttatataa gaaaatactt ctattttttc atagatactt tgaatttctc 660 tacaggcata gccgttcgat atctcaaaga tgacaagcca gagcgacttc ttgggtttga 720 gtcttgttca tctataacag ggaagcaatc agcaatacaa tcattacctt tttgaagaac 780 aagggcctgg acgtacttca gatgcgcggg cagaactatg atggcgcagg tacacccaga 840 gttctgcata ttctgtataa cttcagaaat tgtaggacct ttaatttcgt cgccggtgtt 900 tttaccagtg tatttcttca cattttaggt tacatgtcag gatctcagag aggctgtgct 960 gcgcggatac tggaaaagaa ccccaaggca gtgtacatac actgcgcgag tcatgaccta 1020 aatctagcgc tggtccactc ttcaaagata ccaatggtgt tcagtatgat ggagaacctg 1080 gctgctcttg gccgcttttt caacaactct ctcaagcggt gagtgggata cggcataagg 1140 tcaaatttgt agtagagttg attaatcgat catgcactaa aaatgtaact tttatcaggt 1200 gttcagcttt gggtaactac cgtcattgtg atacccattg ttttttctgc gcagaacaag 1260 ggcactagaa tatgaaattg aaaagttcac ctcaaatttg gaggagagta tgaaaaagaa 1320 aacggtgaag gccctctgtc agactagatg ggtggagaag caccagatat tccaggacgt 1380 tcatgacatg tacgggccat cgtcaactgt ctcgaccaga tggtagaaga caacacgtta 1440 aagtgggacc ggaagaccct cacagaggct tctggtttcc ttaacaccgt aaccagctct 1500 ccgtttctgg cagcatttga gacagttcgt ttttcattcc ggtaagtttt gagacatatt 1560 ttgtgaatga aaatgtgtgc cttagtagtt tttgttaatt gcaattccta acaacaaatc 1620 gttttatccg tataaacaga tacacacacg acttggctac gttactccaa ggggaaagcc 1680 ttgagattta atcagcattt gatgaggttg tcagaaagac ggaggccctg agggaggcgt 1740 tgagagatag tgatatggtg tttgcgtcca tttacgctga gatggccaag aaagcgaaag 1800 atgctaatgc cgagatcaca agaccttgtc tatgtggtcg ccagaccctc agggagaacc 1860 acggaggagc ttcagccact ctaggagtac taccgtgctg ctgtgttcac ccaatacatc 1920 actgaactcg tgaaacaact ccagtccagg taattattca tttaaaaaat tgaacgagat 1980 atactgattt ctcacttttt gtatctaatt aatgtataga taatcccctt gtatcgaaga 2040 tcttaatggc gtaccaccat atcgtatgca ttcaggagtt ttttgttgtt gttcatctgt 2100 aacgtgagcc tcgttttgtt taggccgtgt gttctgccct gcttttgtta cattatctcc 2160 ttgtattgcc agattactgt aatgctctct tttgcatctc ttttgtatag attctctaag 2220 ctctcgatac tgtcaactct tggtttggct ctcattccac aaccattcga tcatctagtt 2280 ggtgggaaag cggtcgagct ggggacacta ttgggatgat cttccaaatc cagagggttt 2340 catggaggaa gtggctagat ggcgtctcct ctggcagtcg gaaaaggata agccctccaa 2400 tctgggtggt accctgtccc acaaggtgat ggcattaagg caggattctt cgtcttttgc 2460 tccttttgcc ggtcacgtcc acgacagtgg aaagggcaaa ctcctcactg cgcttcatca 2520 aggatgtgcg ccgcagtaca atgaccggcg gccggctcaa cgccctactc ctgctattcg 2580 tccacaggga taccgcagag aacctgagcc tcgacagggt ggtggacaga ttcgcaaacg 2640 cgaaaccaag acgtatgcta ctaagtaatg ttttgagc 2678 // ID Gypsy-51-I_NV repbase; DNA; NEM; 3964 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-51_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51-I_NV; KW Gypsy-51-LTR_NV; Gypsy-51_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3964 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3964 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-51_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 537-537 (2007). XX DR [2] (Consensus) XX SQ Sequence 3964 BP; 1219 A; 865 C; 944 G; 936 T; 0 other; ttggcgacga gctaaaaatg gcagcagttt atggaacaat gccgaaatac agcccacaga 60 cgcagtgttg ggaggattac acggaggtaa tgggacatta cttcgatgca aacggcatca 120 ccgaaataac aaagaaacgc gcgatcctgc tcgcctcggt cggggacagg acttactcgt 180 taaaaaaagt ctatgtcagc cgagaacaca gtaggataac tcattcgacg agttggtaaa 240 gttggtgcaa gaccatttta cgccgaaacc ctcagaaatc gttaaaagat tcaagttcca 300 cactcgtgtt cgtcaacccg gagaaacggt gcatcaattt gtcgctgccc tttgtaattt 360 gagcaaagac tgcaactttg gctctacact aaacaccatg ataagagaca gattggtggt 420 aggaatgatt gacgatcacg tccagcggaa actactacaa gaatctacat taaccttcga 480 caaagctttg gaaattgcag tggctatgga aacgaccaac agcaacttaa aagaaataaa 540 tagcagtgca aagtccacga aagaaaatgt gaataaagtg ttcaaaccca aatccaaagg 600 cgattctagt caaaacaaga agggtaagga taaaaaaaca cacaacagtt caagatcaga 660 aggtaagcca tctaaaaact gttttagatg tgggggaaga catgaccaga aaactggtaa 720 atacaaggaa gaaacctgtt tttcatgtca gaagaaaaat acaaacggtt tgcaaaagca 780 aaaacccgct tgcaatttag tgcaggatga tgaaaatgat gatagcgatg tcttgtccat 840 gtattctgca ttccacatgg tagtccaaaa caaaccccca ttgaagtgtc gattgagatt 900 aattctagac cattatgctt cgaggtcgac acagggtgcc cagtgaccct tattagcgaa 960 gagacattga acagtaaaat taccccagct tcagaagtgt acccacgccc tcaagtcctt 1020 cacgggacac aaagtagaga ttttgggaac tgttgaaaca caaattcagt accagaatca 1080 gactagggtt ttccccattt tagttgttaa aggaaagggc cctagcctct tggggaggga 1140 cttgatcaaa gagttttcag ttatgaacat tgctcaaggg gaaataagtc tcaaagatat 1200 tttaggcaag catcctcagg tcttcaagga agaacttggg actctaaagt tcaaagcaaa 1260 gatccatgta cctgaagggg tcacgcccag gtttttcaag ccccgtcctt tgtcctatgc 1320 catgaaagga agggttgaag aagagattga aaggctagtc agagagggga tcctgaggcc 1380 agtagaattt tcagattggg ccgcgctaat tgtccctgtc ctcaaaccag acaactccat 1440 tcgcttgttt ggggactaca aggtaacagt taatcaagtt tcgcatctaa aacaatatct 1500 cagcaaaact agcaacaggg agcaaattct cgaaacttga cctgagtcat gcttaccaac 1560 agttactact agatgaaaag tcagcgaagt atgtcacgat gaacgcccac atggggctgt 1620 ttacttactc tatactcccg cagagtttcc tctgcgcctg caatattcca gcggactatt 1680 gacagtattt tgcgagatat accaggtgta gcagtttaca tggatgacat tttagtcaca 1740 ggggaaacag acgtagaaca cttggaacga cttgacttgg tactgaccaa attagaagag 1800 tctggcctca gactaaagaa ctctaagtgc actttcatgg cagataaagt ggtgtactta 1860 gaacactgct ttggtgcaca aggcatacac caagtagaag acaaggttca agccctgttg 1920 gaaacccgag cacccgtaaa tgtgtcggag ctcatacttg ggtttactaa actactataa 1980 ccgatttctt cctaatctct caacatttat cgcaccccaa cacaggttgc tgaggaagga 2040 aactgcatgg cagtggggag atcctgaaca gcagtgcttt gacacaacaa agaagatgat 2100 tacgacagct ggtgtgctgg ttcattacaa tcctgagcaa cctctcctac tccagtgtga 2160 cgcttccccg tacggagttg gggcagtttt ttcacatgtt atggatgatg ggagtgacca 2220 gccaattgct ttcgcttcca ggacgctgaa cacttctgaa cagaagtatt cacagctaga 2280 caaagaaggc gcaagtgtga tgttcgggct gaaaaatttt cataagtacc tgtatggacg 2340 tcactttact atcgttactg accataaacc gcttgtttca cttttcagcg aaaagaaaca 2400 agtacctact actgcatcac caagggtgca gaggtgggcg gtgacattgc ggggttacga 2460 gtacgacatc gtttacaagt ctggcagtag ccatgggaac gccgatgtgt tgagtcgtct 2520 ccctctaccc atcaccacca aagtttcagc agaggaaacc gcatttctcc tgaatgaagt 2580 tgatgtttta cctgtcaccg cagcccagat ccgcaactgg acacaccggg atccagtcct 2640 tgcaaatgtt aaggagtatt tgctgcgtgg ttggccagat gttaaggacc ctgaattatt 2700 acagtataag tcaaagaggg aggagcttag cgttcaagat ggctgcatat tacggggagc 2760 aagggttgca agtcctcgaa gatcttcaag aggcacatcc cgggatatgc cggatgaagg 2820 cgttggcgcg gagctacgtc tggtgaccat tgagaaggag ataaagtcca tagtgaagac 2880 atgtgaagca tgccaggtcc accagaaatc tcctgcatca gcacctcttc acccctgggt 2940 atggtaagga tgctactcat aatcgtggac gcacactcca agtggagtga agctcatatc 3000 atggcgaaca ccacatcagg cagtaccatc aacaagctgc gtgaggtttt cgctgtccat 3060 ggtctcccag aggtagtggg tgtccgataa cggttttaac ttcaccagtg aggaatttgc 3120 aatgtttatg agacaaaatt gtatagtcca taagaccaca gctccttacc atcctgcttc 3180 aaatggtctt gccgaaaggg caggacagtt gattgaggat ggtctgttga aagagtctgg 3240 tgacacgatg gcaaaacttg cagcggttgt tattccgcta ccggatgacc cctcacacaa 3300 ctaccggaag gtcaccagca gaaatgctaa tggggaggaa attcaggtcg cgttttgatt 3360 tgctacaccc caacctacaa ggaaagatcc ggcagaaaca agagtgaatg aaaaggcaac 3420 aagacgccca tgcccaggat cgacaaatta agcctggtga tcatgtttat tttaagaact 3480 ttggctatgg tcccaagtgg tttgctggag ttatctaggt ggttacaggc ccagtctcct 3540 acaacgttgt cgcaatggac ggtcgcgaac attgtaggca tgtcggtcac cttcggcttc 3600 gttaccagaa acagaagaaa gcgttccaag gaccgacagt tagacgttga tactggggac 3660 cagtttcagt gggtgatact aatgcgagca gtgggttaac agaaggaagc agtagcgaat 3720 tagacatata atccacaagc gaaccaatct ctatatcaga agaaccacac tcatcagctg 3780 cagtcattac ccaacaagac actggacagc agaaaaagtc agaagttgag tcacctacac 3840 cagtacggag atcagagagg gcacggaaac agccttacag cactctgttg tatatgccta 3900 gaactacaga aactgacttc aatagtttat attgtatgtt acgtttagtt gaggaaggaa 3960 gtgt 3964 // ID Gypsy-29-I_NV repbase; DNA; NEM; 4069 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-29_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29-I_NV; KW Gypsy-29-LTR_NV; Gypsy-29_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4069 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4069 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-29_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 489-489 (2007). XX DR [2] (Consensus) XX SQ Sequence 4069 BP; 1222 A; 986 C; 974 G; 876 T; 11 other; tggtggcagt ggcttaaacc gaactatggg cgatacagat aaagacgaac gtgctcagct 60 acactttcct ctccctgaaa gtttcaactc cgcagtgaac ggcttgcagc aagctgacaa 120 ctggcgaaaa tggctgagac gtttcgaaag gtaccgcatt gcctctggcc tcaagtcaaa 180 acccgacaac gagcaagtga gcatactgct ctactccatg ggatcgtgtg ctgacgacat 240 tctcgcaaca ctaaagatcg acggagcgaa ggcaaccttc gaagagatga caacagcgct 300 gaatacctat tttggtgccc gaaaaaacgt catcgttgac agagctcgct tcaatcgtcg 360 cgtgcagaag cccggtgagt cctttgacca gtttttacaa gacctctacc ggctagcgga 420 cgattgtagt tatggttctc taagggaaga attaattaga gaccgaataa ttgtcggagt 480 cgaagatgaa accctatcag atcgtctcca aatcaaatct gacttgactc ttacacaagc 540 tattgaaatg tgcaggctta cggagatgag gaaggaaaat agagatgtgg ttagggggga 600 gacaagaagt cagaacgtag attttgtcaa gaaagttcat ccgaaaaccc ctaagcctaa 660 gaaatcccag cccaaggggg gtccccaggg gagtgcccag ggaaaatcca agtgcatgtt 720 ctgtggcaaa cagaagcatg accgtcagct ttgcccagca aagaatgaca cctgccataa 780 gtgtaataag aggggacatt ggcaaggcgt atgccagtca aaacaagcca agggaaatgt 840 caatgagctt gaagttgaat ctccattcct aggggaggtg agcaaatcca gcgtggagta 900 ctggaaggca gaaatagaag tcgatgggca acccataact tttaaattag acactggtgc 960 cgctgtgtcg gtgatcagcg accaggagcc attgctcaac tcctatgaac tactagtcaa 1020 gcctaaggag gttctgaggg gcccaggggg ttcaaggctc tcagttttag gaacccttga 1080 tgtatgcttg aaggcacagg ggaaagaaat gagagagacg gtgtacgtag tcaagaatca 1140 accccattca ctgcttagca ggaatgcctg tgtgaagtta ggcctagtag tgagggcaga 1200 caccaatgta gaggaagtta ttcccacccc tgattacaga gcagagtttc ccaagttgtt 1260 taagggactc ggcaagatga aaaccgagta ccacattact ttgaaacctg atactaaccc 1320 tgtttgtctg tttacaccaa ggaaagtacc tcacccttta cttcccaaag tgaagcagga 1380 gttggacaag atgattcagc agggagtcat ctctccagtc acagagccaa cccaatggtg 1440 ttctggtatg gtcccagtcc tcaagcctaa tggatctgtc cgtatttgtg tagacctcgt 1500 cgcactcaat agaaatgtcc agagggaagt ccacccgatg ttttcagtcg atgaaagtct 1560 ggccaagctc agcaaaagca gagtcttctc taaactggat gccaacagtg gattctggca 1620 actcccactc gacaaggagt cacgtctact gactaccttc atcaccccct atggcagatt 1680 ttgttttaat cgtgttccat ttggaatctg ctcagcacca gaggtctatc agcgtaccat 1740 gtccagcatc ctacaagggc tagatggagt gatatgtcat atcgacgaca cgctggttca 1800 tggagagacc caggagcaac atgacacaag gcttcgtgaa gtccttagac gcctacaaga 1860 ggcaggtgtg accctcaacg agaaatgtga gttctccaaa ccctctgtca agttcctcgg 1920 acacattatt gaccaaagtg gtgtgcgccc agaccccgct aagaccgaag caatcaagag 1980 tttcccaact cctcagacag tcaatgacct gcagcgattc atgggtatgg tcaaccagat 2040 gggaaagttc ctcccaagct tagctaacct caacgaacct ctaagacaac tcctgaagaa 2100 agagaatgag tgggcctggg gcgagtctca gcaacaatcc ttcacaagga tcaaggaaga 2160 gctgacgtca tcaagaagtc ttgcgcacta tgaccctaac cgcccaacca ttgtatccag 2220 tgatgcatcc aacctgggta taggggcagt cttacttcag ctacaagacg acggaactag 2280 aagaccagtc tcatatgcat ccagatcact ctcagagaca gagaagagat acgcagtgat 2340 agagaaggaa gcactggcag ttacctgggc atgtgagaag tttaccaact atgttcttgg 2400 catgcagttt acagtcgaga ccgatcacaa gccgctggtc cctctcctga gctacactga 2460 cctgtcaaga atgccgccta gaattctgag attccgcatg cgtctcctga agtacaatcc 2520 ccatgtagtt tacgtaccgg ggaagaacca agtcatagct gacacattgt cacgagctcc 2580 agcaagcaaa ccactcccag aagatgacac attggtagaa gaagttgaaa gcttcaccag 2640 tcagattatc accggtttac cagcaactcc taagcgactt caagaaatca gagaagcaca 2700 agatgctaat gaagaatgct cccagattaa gaagtactkt attgacggat ggtcgacata 2760 catgccgaat tcgctattac tgagaccgtw ctgggagaac aaaggtcatc ttgctgtcgt 2820 ggacggacta ctactgtatg acgagagaat agtcatccca cgaragatga gattggagat 2880 cctcaactck atccatcaag gacacctggg gattaccaag tgtcaagccc gagcacgrat 2940 gtctktatgg tggccwggta tcacctcggc tattacagat ctggtaacca agtgtttcac 3000 atgcgccaag catcgaccag agccgaaaga gcctctgatg ccctcttctt tcccgacccg 3060 tccctgggaa agagtggcag tagatctctt tgacctgaaa ggaaagtccc acatggtcat 3120 agtggactac tactcaaggt gggtagaagt caggaaactc acaagtgagt cctcggaaac 3180 cgcaatcagt gtcctaaaag agatattctc aactcatggc atycccgatc ttgycgtatc 3240 cgacaatggt ccccagtttg caagtaattt atatgaacag ttcgcaaagr actatgggtt 3300 wactcatgta acaagctccc cactctaccc aagagccaat ggtgaagtag aacgcgcggt 3360 tcgaacggtc aaggaaatcc tgaagaagaa cgaagaccca tacttagggc tccttagcta 3420 ccgaacgtca ccactacaga acggcttagc tccttgtgaa ctactaatga gccgacagtt 3480 acgcacacaa cttccaaccc taccggaaac tctacagccc aagctgaaga tgaacgaatt 3540 ggtaaagctg aaggcaaagg gggaagctta ccgcagtaat caacagctgt cacatgacac 3600 tcgttaccag gttaaagagc ttccgcaact ccagacaggg gataaggtgt ggattcggga 3660 tcaagatcgg atgggaaagg tactaacacc agcaaagtct ccaagatcct acattgtaga 3720 gactgagaaa ggaagccaga taagaagaaa cagaagtgcc ttggtctcag caacaccaaa 3780 gaaaccacaa gcaccaacaa gtgaagagaa gccaacaaca caacctgcgg tgctaccagc 3840 taagagcgac aacgttgcta cggctgcacc atcaccaatc actacccgca gtggcaggat 3900 tgtgaaaccc ccacaaagac ttacgaatga aacttgaaca ttatcgcata cgggacattg 3960 aaatttatag gttgttgctt actgacattc tcactgtctt tcgttgtagg agtcagcaga 4020 ttagcagatt gattgttaga ctccccagga gattagctta aaggggaga 4069 // ID Harbinger-N3_NV repbase; DNA; NEM; 275 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; Harbinger-N3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-275 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 161-161 (2007). XX DR [1] (Consensus) XX CC Harbinger-N3_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. This family is relatively CC old; its copies are ~7% divergent from the consensus sequence. CC The Harbinger-N3_NV transposon is characterized by the CC palindromic structure and TWA target site duplications. XX SQ Sequence 275 BP; 69 A; 71 C; 66 G; 69 T; 0 other; aggcctggct aaactaggcg acatgtcgag cgcgacatgt agcgtgcgac atgtctccta 60 aatgtttcct agtttagcca ccaccaaaaa catgtagtgc gcgacaaatt ttgtagagcg 120 cgacacgaaa atgtttctca actatccgag aaacatttct ttgtcgctgc tacaagattt 180 ggcgcgcgct acaatgtctc tctgggtggc taaactagga gacatgtcgc acgctacatg 240 tcgcgctcga catgtcgcct agtttagcca ggcct 275 // ID DNA-5-19_NV repbase; DNA; NEM; 152 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-5-19_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; HELITRON; KW 5-bp TSD; NVREP30; DNA-5-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-152 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-152 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-152 RA Kapitonov V. and Jurka J.; RT "A family of non-autonomous DNA transposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC The genome contains ~1000 copies of DNA-5-19_NV. They are 76-96% CC identical to the consensus. It was originally reported as the CC unclassified NVREP30 transposable element [1,2]. XX SQ Sequence 152 BP; 40 A; 45 C; 35 G; 32 T; 0 other; tgtgcagtag cggatctagg gggagggttt agggggttta aaccccccct ttgggctgcc 60 agaaagccat atgtaacaaa aaaaattacc ccctcccccc tttgtcactg agccaaaccc 120 ccctttagcg aaaagctaga tccgcccctg aa 152 // ID Gypsy-39-I_NV repbase; DNA; NEM; 4141 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-39_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39-I_NV; KW Gypsy-39-LTR_NV; Gypsy-39_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4141 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4141 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-39_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 509-509 (2007). XX DR [2] (Consensus) XX SQ Sequence 4141 BP; 1253 A; 862 C; 962 G; 1064 T; 0 other; attggcgacg agggaaaatg gaaggtgtgc aaaggaatat tggtgctttg gagcctttcg 60 atggtggtga ttttgcagat tatagcgagc atttgaactc gttcttcgta gcgaataata 120 ttggacagtt agcagcagga gcaacagaag ccgaacaact agcggctgac aagaaaaagg 180 tggcagttgc gatctcactc atcggaaaaa acaacataca gtacgttaaa agacctgtgc 240 ttaccagatt taccagcgga caagacattc catgaactga cgaccatttt aagctgtttt 300 tacaaaccga aggtcctgga ggtggccgaa acgtacagat tccaccacac agcacaaatg 360 gaaaccgaaa cagtgactga atatgcaaac aaactaaaac gcctcgcagt acattgtaat 420 tttggcgcct acttatccag agccctaaga gaccaatttg tggggggcat gaggagccaa 480 gctacacgga aaaaaactcc tttctgaaga tagaacattc gaccaagcgt tgaaggtagc 540 tcaagcagac gaactggccg aaaaggaatc acgacaccta gttgacaagc ctggtctcct 600 cgaacaggaa gttcgctttg taaaaaagaa gcctgttgga tctgatacag gcaagaagtc 660 tactttatgc ttcgggtgtg gctctgacaa gcatttggca gatgcttgta aacacaagga 720 taccatttgt ggttattgta gcaagcccgg acacctggtt cgagtttgtt tcaaaaagaa 780 aagagatgaa aagtctaggc aaacccacca gatcacgaca gaggaacact ccagggagcc 840 agacgttgtt tctgattctg agcttgcagc tgactcaatt tatacagtat acatgcatca 900 tgttggggga tcaggagagg gaaaccccct ttatacaagt tagccgtggt tatttagggc 960 aaggaagtca ccatggaagt cgatacgggc agtgcagtta cactcataaa tgttcaagat 1020 tttaagagca ttggaggcag catccaaaca ttgaaaccac ctacgattct acttaaaggg 1080 tacacgggaa ataccattaa gtgccttggg gagagtgaca tgtgcatcca agtaggagac 1140 caagttggtg atctgaagat tcgaatcgtt gaggggccct cccttctggg gagagaccta 1200 atgtccaagt ttacactacc ttggcagaac atttttagtg tagtaccgac tactacggag 1260 gatataatac atcaataccc agctcttttt gatactacta ctgttggaaa actccaggga 1320 gtacaagtct ccttgcaagt agataatagt aatccagtgt ttgtgaagcc tagaactgta 1380 cctttcgcgg tgcgcgacaa atatgaacag tccttagaaa agttggaggc tgaggatatt 1440 attgagagag ttgaacactc tgactgggcc tcaccgacag taccagtagt caaacccaat 1500 ggagatttac gcatctgtgg ggattactct gtcactatca acaagcactc tacacttgaa 1560 caatacccag tccctacact ggaagaattg ttgggtaagt tagcaggggg gaaaaagtac 1620 accaaactgg acttatctca ggcttaccat caactggacc tctacccaga gtcccgcaag 1680 tttactaccg tcaatactac taaaggattg taccagtaca aacggctaac ttatggaatt 1740 aacagcgctg tttctatttt tcagcgcacc attgagaatg tcttaaaggg tctacccggc 1800 tgctgcgttt acattgacat tttgatcacc ggagagacag atgaaatcca ccttgaaaat 1860 ttacaccgag ttctacagcg tctacaagaa tgtggtctga agcttaaaga aagcaagttt 1920 cattttatgc ttgatcagat tgtttacctt ggattttgca tttctgcagc agggatttcg 1980 ccaacacctg agaaagtgcg agctattaag gatgcggaac cccccagaaa tgttgcagaa 2040 ctacagtcgt tcatcggctc tgcaaatttc ttacggaagt ttgtacctgc ctttgctgag 2100 ctagcttccc cactatacaa gcttctacgc aaggatacac catggaaatg ggagaaagtt 2160 gaacaagagg cttttgagtg ccttaagtct gctatgtgtt ctgatacagt gttacaacat 2220 tatgatcctg cagctgaact agttctacac tgtgacgctt cctcggtcgg ggtaggggca 2280 actattttgc aacccgggcc tgatggaacc ttacagcctg tggcttatgc ttcgaggacc 2340 cttagctctg cagaacggaa ctattctcaa attgagcggg agtccttagc tattgttttt 2400 ggagtgacca aattcagaca atacctatta ggtagacatt ttaagttact aactgatcac 2460 aagcccttga ttacattgct gggagaacac aaacctgtat cccagttagc gtcggctcgc 2520 attaagcgat gggctttact cttagcggca tacaattaca ccatagagtt tatcccaggc 2580 aaggacaatg tttttgcaga tttcttatca cgaaaacctg tggagtgtga accctcttcc 2640 gaggaacaag tgacagtaaa tgttatgttt atcgaagagg aacaaattgt aaccgcttct 2700 atggttgcaa tggaaaccaa gaaagatcat gttttaagga aagtacttga ttacactagg 2760 aacgggtggc ctgataaacc agaaaaggaa ctcctccctt actactacaa gcggttagat 2820 ttatcctgtg aggatggagt attgttatgg gattctcgtg ttgttattcc agaatcatta 2880 caaggatttg tattaaatga cttgcatgca gaacattttg gaatagtgaa gatgaaacaa 2940 cttgctcgta aatatttatg gtggccaaaa ctggaccaac aaattgagga gactgtgaag 3000 gcttgcgtcg cctgtcagga agctgctaag gctccgcctt catcaaagca agctgcgtgg 3060 tcatggccag ggggtccctg gaaacgacta cacatagatt ttgcaggacc atatttagat 3120 aaaatgttct tagttgttgt agatgcctac tctaagtatg tagaaattgt acctatgact 3180 accgccaatt cagctaacac catttcagca ctgagacata tttttagtca ttttgggttg 3240 ccagaacacc tagtttctga caatggcagc caatttacaa gtgatgagtt tcagaaattt 3300 ttaaggagta atgacatttt acatacaacc acagcaaggg gacaccccac cacaaatggg 3360 ctggcagaac ggtatgtggg ggactttaaa gacaaaatag gtaaaattgg cagcactggt 3420 gaatcacttc agactaaatt agatagattc ttgttgacct atagggctac acccaatgct 3480 acaggaaaat caccctctga actgttacta aacagacagc cccggatacg gcttagtgct 3540 ttgcgaacaa gaaggatgaa acaggaagtt aagatttttc aagataattt gaacaacaaa 3600 cccaagtact ctcaagatca agctgtgttc gctaggaatt ttgggaaggg ggcaaagtgg 3660 ctaccaggtt taatagttgg gacattcagc ccccgaaatt ttgatgtaca agttggtgat 3720 gtaatatgga agagacatga ggaacaatta cgccctaggt atattccttc caatcagtta 3780 gctccaaagc cgttgtatca aacagcactg ggcaatactt accggaagcc caatggcttt 3840 cctacagaga ttagtcaaga aggtgaaagt acacctcagg tgcttttacc ggatttacct 3900 gagatggggt ctccattaac aatggatact gaaggagttg agactacaga agctacagag 3960 cctgtgccta ggccttgtgg gacacttgag acactaggga gtatgggttc agaagtcatg 4020 accccacctg ggattgcctc ccctgtcaag agatacccat ctagagaccg gaaaccccct 4080 gatagatttt attgaactgc gtagcctaga taagttacta tttaacttga gagagggcag 4140 t 4141 // ID Gypsy-68-I_NV repbase; DNA; NEM; 1755 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-68_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-68-I_NV; KW Gypsy-68-LTR_NV; Gypsy-68_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1755 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1755 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-68_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 565-565 (2007). XX DR [2] (Consensus) XX SQ Sequence 1755 BP; 604 A; 371 C; 368 G; 412 T; 0 other; cagcaagctc tcttgactac atttattaca ccgtttggga gactttgcta caacagactg 60 cccttcgaca ttacgtcagc cccaaaactt ttccaatgac aatgttatga tttattcagt 120 ggaaacttgt gtacagagat gattatttta atttgatcta cggaagaacc aagagaagca 180 cgatgagaga ttggatgcag cactagaaag aattggagca gctggtctaa cacttaacaa 240 agattagtga aaattctcac cgtcgcaata cctttctagg acaagtcatt gatgctgatg 300 ctgtacgtcc aggccctagt aaagtgaaag ccattatgaa cacggcagag ccaaaagaca 360 tgccagaact aagaagattt cttggtttca cgaaagagct aggaaaatct acagatacgt 420 ctgcgaacat aaccaagcaa ctgagaaaaa atctgagttt agggaaagat tggcattggg 480 gaccgccaca gcaacaagca tttccagagt ctgaagaaag agctcagcga ccctaacaaa 540 atcatagcac acgacgatat tacagcagaa tcagtcgtca gtgcagatgc atcatcttat 600 ggccttggtg ccgttgtaac gaagctacag gagaatggtg agtggtgaca aatacatagc 660 ataccaatca aaatccaagt ctgacgcaaa aaagcgctac cctcacatcg ataaggagtg 720 tcttgcagtc accttgactt gtgaaagatt tggtgatcta ctggtaggca agacgttcaa 780 acaaaccaca aacctctagt cgtgttgcta ggcaacaagg ccaccacgtg ttcaaagatt 840 tcgcatgctc ctgatgaggt ttagcttcaa catagtgtac gtcccaggaa aagaacacaa 900 ttctgccgat gccctatcca gagcccaggt aggaaaggag gaaaaagaac tacattaccc 960 aagatgagtg tttgtagacc aagaggtcaa agatttacca gtttcaaacc aacagctaga 1020 aagaattgct cgtcaccaga aaggagatga aacatatcat ctattttacc aatattgctc 1080 ccaaggatgg ctggagaaag tacaaggtat tgtaaagcat taccaaccag tagcagctga 1140 aattactgta caaaattgca tattgatgct aggatgcaga attctcaaac ctcttaccct 1200 gagaaagaag atgctttaaa actacatgct ggacatttct gattagtcaa gtatagacaa 1260 ctcgcgagac agtcagtgtg gtggccccgc ttaggaacaa ccaacttgaa gagctcataa 1320 ccaactgtag tacaagcaaa tggattatct gagaatgcag ttgtaactct aaaatcaatt 1380 ctaaataagt ccttggtctt ctagcgttat acaagacaag ctcataagag cacggttact 1440 cttctgccca tctcctgatg tcgcgacacc tccggacgac acttcctata gttcaagatc 1500 aactgaaagc atctgatatc aacctccatt gcttcaagga aaaggatgaa agcatcaaac 1560 taagacagaa aaatatttga tgttcatcat ggagcagaga aattgccacc actggatacg 1620 ggaggccagg tttggagacc agatcttcaa actaaaggaa ctgtacagaa agaagctgca 1680 acatagagtt actatgataa catagacaaa ggttctgaaa ttagaaggaa taggagacac 1740 cgtaatcatc tacct 1755 // ID Harbinger-N27_NV repbase; DNA; NEM; 542 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N27_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TwA TSD; NVREP381; Harbinger-N27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-542 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-542 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-542 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N27_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 542 BP; 162 A; 117 C; 130 G; 133 T; 0 other; gggccaatcc gcactagtac ttttagctgt ttgtacaggg atagttgttg acaggacctt 60 tcaggttatg accaaagaca agtgcggaca cgagtagaca gtggacaaaa gtttgtcctc 120 ggcgggccga agatcaaagg atgcgacggc ctgcaggctg agctggccgt ttcgaaacaa 180 aaacacaact ttgtttatcc ttgtcaatca ggccgttgcg aaatgaaata ttatcgcagg 240 caaactatag aatcgtacta gttgcagctt gctcgacaat ggacagcaat agatcccaga 300 cagatattat atacgagaga gttttaaccg tgtttgcaaa cactagacgc ttctacgtac 360 catgattcgg ttctcagaag tcacagttga ttgacatgta tgcattttgt gttcggcttg 420 aatgttcagt gcggattcac atataattgg ctaagtcctg tcccggagaa acaaaaacac 480 acgtaccgac agtggacaaa accagaaaca aaaacaagcc tccgtgtagt gcggattggc 540 cc 542 // ID Helitron-N10_NV repbase; DNA; NEM; 1567 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Helitron-N7_NV non-autonomous DNA transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1567 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1567 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1567 RA Kapitonov V. and Jurka J.; RT "A family of Helitron-N7_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC It shares common 124- and 240-bp termini with Helitron-N9_NV. XX SQ Sequence 1567 BP; 459 A; 306 C; 285 G; 517 T; 0 other; ttactgggat acctgtggta gcccagttat aaattgcaac tgtttttttt cccgtggtcc 60 cgggaaatct gcaatgtttc gcaatacccc aagagccttt gcgccatagt caatacttcg 120 ctcgttcact tcaagacagg agacgcgcca cgttggattt gagatttcat ccgagcatta 180 gcttatattt gtgcaggtaa aaaaggcaac tttggcaatt atattattgc aaatgcaatc 240 aaagcttttc tatctataat gctattgtgg aaattcatgt caatttgaat ttttaccgcg 300 tatttccttc gtcgattcat gatacgatta gtcgaagacc cgacccgtag ggccgtagag 360 aaagaaacaa gtgttcggga gctttcttca aggccaaaat ttgaggtgct ttagctttat 420 acactcagga atgaagtaaa gttaattaca tttatttctt atgtgcattt tgtattttgg 480 tgggaaaacg gctgatattg tcaacaagga atgctaggga atgctgttga gacccaaaat 540 aaattgtggc taataatcgc gggtttattg gaacaatttg gaacaatgaa ttaaacaatg 600 atatgtaagt acttatttat tacaatactt actgctacta aattaaaaaa aagagagttt 660 gtttttttgt aatatttctc attattattg ttcccccaat gctgctgctt cctaagtgat 720 gctctaaaat tcgccatgaa tatgctaata tcttaaaaca ttttttgctt agtattcaga 780 ttttattaca aacccttata gttagaaaat agcaaggtct ccagtgggag accggagttc 840 caagaaagga agaagcagct cccattcgtg tctatatatc tgtcttcaca tctgtttcta 900 tattttttta aatttcaaag caaatacacc caaggaatgt ttggccatag ccccccttgt 960 tacatccatg gtattctaga agttaaccag ataggcgtag tctttcctga aggagtaatt 1020 caaacagcac cagaaatata gggccagctc attgtctcac aagagtagct gttggaaaac 1080 aacttggtgg actaaatata tcttttgact ttccagatta tttgtttgaa aattgctata 1140 tcctaaaaac tgttttgacc ccccccccca aatgtgctat cacttataac aattttcaaa 1200 cacattttct atgacagtgc tctgctgtgg attatatctc tttctatgta gtttatgtgt 1260 atgtgtatgc tctctacact gctgtatgat agcatttggt agaaatttac actgtaaaag 1320 ataggacaat cagtcatgtc cactttcatg gtgagtcccc cccccccccc caatcaaacc 1380 tggagagttg gtgcttctta ccattcttgc cccaatcagt gttatgatat ggcatttata 1440 atataactca agattttaca aatgttttta gtatatccag gcggtattat tatggccaaa 1500 aatattgtca tacatataca caggtaaccc atcaggtatc ccagtcaacc ctgcgcgcag 1560 ggtcttg 1567 // ID Sola3-3_NV repbase; DNA; NEM; 3846 BP. XX AC . XX DT 18-FEB-2011 (Rel. 16.02, Created) DT 18-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone Sola3-3_NV DNA transposon DNA - consensus. XX KW Sola; DNA transposon; Transposable Element; Sola3; TTAA TSD; KW NVREP5; Sola3-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3846 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3846 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3846 RA Kapitonov V. and Jurka J.; RT "A family of Sola3-1_NV DNA transposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (18-FEB-2011). XX DR [3] (Consensus) XX CC This transposon codes for the Sola3 transposase (pos. 1800-2800). CC Consensus sequence is not a perfect approximation of the real CC autonomous transposon: it was derived automatically starting from CC a single copy of Sola3-3_NV identified as a putative transposable CC element inserted into some of other transposable elements [1,2]. CC Originally, it was reported as an unclassified DNA transposon CC under the NVREP5 name [1,2]. Copies of this transposon are CC usually flanked by the TTAA target site duplications. XX SQ Sequence 3846 BP; 1167 A; 819 C; 807 G; 1052 T; 1 other; gagtgcatcc aggagtgtac caggcagggg tgatacatgc catctcaccg atttcaatga 60 aacttggtca gattgaagta tccacccaac aactcaaact gccgaagtgg ttcagatttt 120 ggaataatcc gggggagtta tgaccacccc cctggttttt ggccatcaat tcgggaaaat 180 cgcctgaaat aagcatgaaa tgttgactcc actcctgatc acggattaca agggaattcc 240 atgatgtttt atgtgagtaa agatccatcc tttcttgatt cacaaccaag gtttcaaatc 300 atttggagtg acaggtgcca atcaagggct acacgtgtct accatgtcac gcatgatttc 360 actgatcgga tttcagtgtc aaatatctcc gatgcgcaac tttcttttca caaattgttt 420 ataccattac tcaaactcat cttcaaacct aacaaatccg taataaaatt ctcgggactt 480 ggtatttttt ccgacaaaaa ttattctaat caccttacta cttattgatt ctggtacata 540 aaaaaatcaa atttcacatt aaaaaatatg cagacaatta gcagcctata tgttttaaaa 600 tgatagaaga tataagttat gaagttctgt gttgactgaa ggtaatatcc gaataaatat 660 ccgtcacgaa ttatgtacgt tactgcaaca atgtcagttt caaatcgaca ttttagtaaa 720 aagcgcattt gtgccagtag tgccggtttt ttcgttcgag gctactgaac tatttacttc 780 aacgactgga cctaaatatc ttctttgtgc aaaatcgata aattgcacca tctttttgtt 840 aaacatcttg tttctgaaat acaagttcct cgtagtacat aatcaaatgt atggcttata 900 ataatttcaa aaagcagctt tctttataaa caataagtac taggtgagtc aacaccaggg 960 gtcaacacaa gaacgattca ctgatcattg cgtgacagca tgagccaaga tcttgttgac 1020 tttggtagac attcagtcac aaatggtgca cagccgcgcg cattcgcagt attttcattt 1080 ttttagccaa attcgttgtt gcgcgacctc tgcgaatcca aaatccttgt ctcgttgggg 1140 aatagcgcgt agtcagacac aagcttttgg gggcggtttg tcttgttttg attgtttggt 1200 ttgattgact aagttatcct atacacagga tgtagcaaag agcgatatca ttaacaacct 1260 aaccgcaaac caggttctcc tgaattgggc catgaaattt gtacctgcca gttcagagaa 1320 acacagcgag actcaggcgc gtacccagga ttggctgagg ggtgggtgcg cggtcatagg 1380 taacatggaa aaagcctagc gtttgaagat accttaataa gaaatgaccc acaggctacg 1440 cccctcgttg attagttact catagaaaac tcaactcatc gtgtaatgat aaggtatata 1500 cattttacct tgctaccatg acaacgccgc attaacgaag gaattctcag agcccgttgt 1560 acataaatct catttggttg ttatgatcgt atgtagcctg tcgttatatg gggggggcat 1620 attacacgca cagcacacca caaagagaaa catgacagaa accagctgta aacaaaatgt 1680 tctgtccata aattacagtg tgactaaagt atgtattatt tttactcttc tgtttcatac 1740 cacaacgtac atacgtgcat ttgaggaatg tacacaaaac tagtttgcgg ttgcttcaag 1800 aataaagcac acccttgaaa cccttgaagc tgccaaacca cacctcacca aagcgttcct 1860 cgggctgtta tcattctgcc taccttgtcc tgtccctgcc ctccattggg gagcgygcag 1920 gcataaacgt agccaggtat gattttagtg acccacaggc gggaaaggat gtatgcgaca 1980 agcgcaccgc tacagtcaag agccacattc gaaggttcat caacgaaggg aacgacatca 2040 aatgtgcaaa ggcatgaagg ttgcaatgga gtcgtatggt ggaataaaag gatgcctggc 2100 agcggttgct aaggtcaacg aggacagcca aaccatgaaa gcccataaaa tatccaggct 2160 cttaacaact tctgctttga gtctagagat ctccgagctt ggaaagccta caatgtaggg 2220 cctggtaaac gttttacgcc agagcagcta agacggttcg ggccaaccca gggtgcaaca 2280 cgtctaattg tctgtctgcc atttggtaga ctgcaacaaa ctggcattct aagatcaaca 2340 gtccacaggc aacctcgtca agaccaacca ctgcctactc tcctgtccag aagatggatg 2400 tataaagaca tacccgtctt ttgagagtct tcaaaaccac ctggacacag gaaagcatct 2460 gatacgacaa gaaagagagt ctacttacga cacactataa agaagaagtg ggcataaaac 2520 gacaagggag atgactggta gctacttgca tagggtagtg ccaagtggaa acgtcgccaa 2580 gattgcacca tctacgtcta gcagccctgt acgccaagct ggttgggcgc tcaagacaac 2640 ccataaggca acaagattct atagcgactg ctatagatgt ctgtgcaaag atgcaatcag 2700 ctcatgatgc aagcagcaag aaactgttca aaaaggaagg gagctttccg cagatcagat 2760 tgctcgatat ttcagcagat tgtccgttct ttataggagt gggcgactgg ccattgatca 2820 ggcaaatctg agtcccgacc aggacaaaga ggactttgtt caagacgctg aacaaatgca 2880 gacaagactc gagatccaga gagagctaga gctttaaaga tacacagcta tgtactgtct 2940 caaagacatt cactccttgc ctttttcttg tccattcttg ataatgtcac gaccccctgc 3000 agcgccctaa tatatgtaga tatgcgttgg cgtgtacgtc cgaaccgaag gttaaggtag 3060 ttattgccgt tattatatta atagaagaat aaggtcttga tccctggtaa ctgatatatc 3120 agatgttttg cttatataga acaaaatggg atttgacatt cccccattat tgttgtaacc 3180 atggcaaccc agttcttaac ttattcttaa cgtataattg tcaaacatat aagctgcgaa 3240 ttgttgccaa agaatcacaa ccgctttttt tataagaaat tcgaaatttt ctacatacca 3300 tcatcagtga gtagtaggat gattaaaata attactgttg gaaaaaaata tcaagtcccg 3360 agaattttat tacggatttg ttaagtttaa agataacttt gagtgatggt aaaaacagtt 3420 tgtgaaaaga aagttgcgca ttggagatat gtgacactga aatggagcta ttttgcccga 3480 ccagcgaaac catgcgtgac atggtagaca cgtgtagccc ttgattggca cctgtctctc 3540 caaatgattt gaaaccttgg ttgtgaacca agaaaggatg gatctttact cacataaaac 3600 attatggaat tcccttgtaa tccgtgacca ggagtggggt caacatttca tacttatttc 3660 aggcgatttt cccgaattta tggccaaaaa ccaggggggt ggtcataact ccccccggat 3720 tattccaaaa tctgaaccac ttcggcagtt tgagttgttg ggtggatact tcaatctgac 3780 caagtttcat tgaaatcggt gagatggcat gtatcaccct tgcctggtcc actcctggat 3840 acactc 3846 // ID Gypsy-74-I_NV repbase; DNA; NEM; 4343 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-74_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74-I_NV; KW Gypsy-74-LTR_NV; Gypsy-74_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4343 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4343 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-74_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 573-573 (2007). XX DR [2] (Consensus) XX SQ Sequence 4343 BP; 1362 A; 958 C; 889 G; 1134 T; 0 other; tctccccaca acttaaccca aacaaaagat tcgttagaag ttttgaaaga ggatcagttc 60 tccgcgcaaa agtcagacaa ggatttatag agggacatgg ctaaaccgaa ttttgagaat 120 agaaaaagat taaattgtaa agagatctca gaggacaatt tttatgtaga tgtccctcgc 180 atcagagaac gttctcttgt tagggaagtt attgatgaaa acttgagctc aagtggcact 240 tgtaatggga attcccttcg tgtactgaac gcacagttgg gaatattaag ttcagaaaga 300 gttaccaaaa gtacaagtgc gaaaccacat tgcgacactg atgtgcctgc tgtccctagc 360 ggtttagcgg gattgagtat ggacacgaag ggactttctt ttaactcaat tcaacattct 420 gacgcgggaa acaaatgtat tatacagttt atgggccaca caaacagtat gaaaattgaa 480 ggtcacattg atgacaagca tgctgtattt cttgttgaca cgggtgcaca cgtctcggca 540 attaataagt ctgtttggga tcagctaaca catcaacctt ttttggataa aacaaatcta 600 agagcgatta ctacggccag cggggagcct ttacaagtac atggcactgt ttcaattgat 660 attacgttag atgggcacaa ctttccatta actgctcatg ttattgaaga tttgacctac 720 caatgtattt taggaagaga ttttctatct cagcacaacg atgatttgaa ttttcaagag 780 agtaaactgg tcctcactct tccggagact ttccttttac tatatctaac aatgtagagg 840 aaaacgcaga cgaggcagat gtattttcag ttattgcaaa tcagtatttt gtcctgcctc 900 ctcaatcagg gaccttgatc ccaggaaaga ttaagggacc agaccataca cacactgtag 960 gtttgataga acggagagag gacctccctg acaaattttc aatagtaggg gcttcagaat 1020 tagtcacggt ttcagaagga aatatggtac ctattcgtct gcttaatcct acatcagaag 1080 gggttaaaat ctatgagaac actagacttg cctctttttc aaaactagac aaccacacta 1140 aaacaatcga gttcccaggg gaacaagata tgacctttca gtcaggacac acctctccag 1200 gttcaacatg tgacacgtca caccttccag acatttcaca tgctgctttt tcagatgcaa 1260 ataaggctaa gctacagcaa ttgctttatg attatcgaga tgttttgcat catcagttga 1320 acaattaggt agatgctcaa taattgaaca catcatagac acaggggatg cctcaccgat 1380 aagacagagg ccttatagga ccacacccga gaaaagagag gaaatcgata aacaggttac 1440 ggaaatgtta agaaacaaca tcatacaacc atcaactagt gcttgggcat cacctgtagt 1500 tttagttgct aaacctgatg gttccatgag attttgtgtt gactatcgca aacttaatgc 1560 agttactaga cgagactcgt tcccactccc cttaatctct gaggtgtttg acagtttatc 1620 aggggcacag gtatttacta gttgtgatat gaaggtgggt ttttggcaaa tccaagtttc 1680 agaggagtcc agagagaaaa ccgcttttat aacgggttgt gggaattcca ggtattgcct 1740 ttcgggctcg cctcgagccc tctgacattc taacgcttaa tgggtcacat tataagggga 1800 cttgaataca aatgtgctct gatctatatt gatgatctca tcatcttttc caaatcagaa 1860 gaagaacact tagagcattt ggctgagata tttgagcgct tacgagcagc caatcttaag 1920 cttaaccctg ccaaatgtga ctttgccaaa aagaaattgc agtacctagg ccatgtaatc 1980 acacctgagg gaataagtcc tagtggaagc aaagtaaagg cagtttcaga gtatccaccc 2040 ccacgaaacc tcaaagaact aagatgtttt ctgggtatga ttaacttcta ccgccggttc 2100 attaaggact ttgcagccat tgctagacct ctcaatgacc tcactaagaa atctgtgcaa 2160 tttgtttggt caccagaatg taaccaggct ttccagacac tgaaagactc cttgctctca 2220 gcaccaatcc tagttgtccc tgatttttct aaggcttttc atttgatcac cgatgcatct 2280 gccacaggga ttggcatgac attagcacaa caggatgaaa aaggcactga gcggccaatt 2340 gcttttaatg gacgcagtct caattctagt gagcgaaact actcggccac agatcatgaa 2400 ttgttagctg tcatagaagc aatcaaaaag ttttcaccat acatacatgg tagaaaagtg 2460 ttcattcaca cagaccatgc agccttacag ttcctagcta aggctaagga ttttcagggt 2520 agattggcac gctgggccct gttgctgcaa ccacaagact atgaaatagt ctacagacca 2580 gggaaatcta atgttgtcgc aggtgccttg agcagacggc ctaatgaaaa tttgcaactg 2640 tatgccttta atcaaggacc tagacaattt ctagacattt tccaccacca aaggaaagac 2700 aaggatcttg cagcaataat tgattttctg gagagtcatg tcttgccaaa agacaacaaa 2760 ctagctcgcc agctaatcct aacaaaggat aatttttatt tagataaaca cggactcttg 2820 tttcatttgg aacacaaaaa caacaggcga gaccaggttc caatttcaca actagtaatc 2880 cctaagtcta tgcgtcatga agtgctcaca catgcacatg accacatcac tagtggacat 2940 ttcggtacaa ataaaacata tcacaaactc agacttcggt attggtggaa gggcatgtat 3000 caagacactg accactggtg caaatcttgc accgactgtt ccatgaggaa atctcctaag 3060 aatcagctta aagcaacctt ggttcccatc ccagtagagg gaccctttga tcgggtggct 3120 atggatattt taggcccctt tcctacatcg tcacggggaa acaaatacat cctagtgatt 3180 agtgattacc tcacaaagtg gccagaagct atcgccctgc cagacacgac agcaagcaca 3240 atcgctgagg tttttgtgaa tgagatcatt gctcgttttg gttgccctcg caccttgttg 3300 agtgacaggg gtccaaattt tatgtcctct ctagttggcg aaatttgtag gatctttaaa 3360 atcagaaaga ttaacacttc tgggtataac cctaagtgtg atgggctagt agagcgtatt 3420 aattccaccc tacttcagag tctctctatg tatgttagct catcacaaaa agactgggac 3480 cgattcatcc cttgttgtct atttgcttat cgagtcacac cacatgaaag cacactcgaa 3540 acaccacact acttactaat gggtcgcgac gcacgattag ttattgatac gaagctactt 3600 ccacctgaga acctttcctc ctctgtatca gaacacagga agcgaattgt agaagcagtg 3660 gaatttagcc aaagcttagc atgagaaaat atcatgcgca ctcaacaaaa gatgaaattg 3720 ttttacgatc gcaatgctaa aatcagaaac tttgaagtag gggaactagt ttggattttc 3780 actccgagaa ctcctaaaaa caagtgtagg aaattgattt cgaagtggac aggtccctat 3840 cgtcttgtga aacgaggggc ctcgggtgtg catttctttg tacgaacgtt agacatcacc 3900 gtgctagatt cgcagtgaat gtgaaccgca tgaaacgagt tatcgacaaa aacgaaagac 3960 ctatagaccc ccctgacaat gacaacactg acgaacctta cctggatgaa gacgatctcc 4020 cttcacacag tttcacaaca gtagaaccac tcaaacaagc ggaggacgct cttaccaacc 4080 agtcgacatc cgtgccaagc acgagccaaa ctacacataa cagaactcca gacgagacat 4140 cagagaacaa atccaaatcc tcactaacac cgaccgctac agaacaatcc acagacaatg 4200 acgggatttt catagtgaaa aagctgttga attgtcgccg aagaagcaaa acaaccgaat 4260 acttagtctt gtggtcagac gattcacaaa cttgggaacc gcgccataac attttagata 4320 agcgactcat cacccactac aac 4343 // ID DIRS-12_NV repbase; DNA; NEM; 3589 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-12_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3589 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3589 RA Kapitonov V.V. and Jurka J.; RT "DIRS-12_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 406-406 (2007). XX DR [2] (Consensus) XX SQ Sequence 3589 BP; 1172 A; 752 C; 722 G; 943 T; 0 other; aaagacttgg cagaagcaag taaagttacc tcaaaggtga cctccaaaac attcaaccgg 60 aggcactcat ataataacca gaggccctcg tatagtaacc agagattgca gttcaaaaac 120 cagcgatctg agtacaagtc caagtttcat tttttaggaa gaggaagagg aaaggcacag 180 agcggataca gaaactgggg caacaaaaac aagcctcagt acccagctcg acgctgaccc 240 acccaccacc tgaatatata caggtgagtt gttaccgggg aaaaactact gagcaaaagc 300 agaatacact ggaaaaagat tactcaagcg ggtagattga aaaatcacat ttctcaatgg 360 gaagctatta cgtctgatgg gacagtttta aacagtacga agctatacca ttgagtttgc 420 ttccccacct atccaatcac aaatgccaaa acaacttaaa tgtgacaaaa cagaacaaaa 480 atcattaata ggcttgatcg aggagctttt acagaaagag gtcactgaga aatgtagcca 540 tgaagaggga gaatttatct cccctgtgtt cctgagacct aagaaaaatg ggaaatacag 600 gttgattcta aatttaaaaa agcttaatga aagcatccct caaattcatt tcaaaatgga 660 cacattacaa tcctgtatta accttatgac caaaaattgc tttatggcct ctctggacct 720 aactgatgcc tattactctg tgtcaattaa tgacaattca taaaatttga aatttaaagt 780 gggtaacaag ccatttaagt atgttactat ggcaaattgg cttagcccag cacccagggt 840 atttaccaag ctaatgaagc cattttattc tgttttgcga gataaaggct ttacctctag 900 tggataccta cagttttttg atgggcaaca catttaacga atgcaaaaac aatgtaaatg 960 ccacgtattc attgctctgt gaactagggt tttcagtctc agagaaaaaa tcggtcacac 1020 aaccaaccca gctgcttata catctaggat ttaaattaga ttctgtaaca atgactgtaa 1080 gcataccagc agaaaaggtt aacattatag tagccttggc agataaaatt ctaagcaagg 1140 atgtattcac tatcagagaa gctgcaaaat taattggcac ccttgtttcc agctcccaag 1200 gtgtggaata tgggccaatg ttctataaac aacttgaaat agacaaaatt gatgctctaa 1260 aagcactgca ggggtcatct gagggactaa tgcacttctc agaacttgca aggcaagaca 1320 tttgttggtg gaaaaatgag agttttaagc atgcaagaca gatttctcat ggtaccccga 1380 actccatact aagcactgac gcttgcatgg aggggtggga gacaacacgg aacccaccgg 1440 aggcaggtgg ctagaacagg aaataactga atacaaacat atcaactgtc tagagctaaa 1500 agcagcctat ttaggactac aagccttatg ttctcacgag accaaaattc acatccatct 1560 gcaactagat aacaccacag ctgtgcatta cattacaagc atggggggaa cacattctaa 1620 gctttgtaac aaaatcacac gtgaaatatg gttatggtgt aaagctagaa atatctggct 1680 aacagcgact tatatccccg aaattcaaaa tacaaccgct gaccgcctga gtcgcaaatt 1740 tcctgaccgc attgagttgc aactggatcc acaggtcttc aaatctttgt cagtgcgatg 1800 ggattgccag atattgacct ttttgccacg agacagaatt gtcagcttaa accctttgta 1860 tcatggcagg ctgaccctga agcttcggct gtagatgcaa tgtgtttaag ttggagtgac 1920 aaatattctt atatatttcc tcctttcagc acgttgacca agatgctaca aaaacttcaa 1980 gaggaccaag gacaagcact agtaattgca cctctatgga gaacacaggt ttggtttccc 2040 agaatgtcat ggatgttaat cagccagcca gtgctgccac ccaacaagaa gactctactg 2100 caacttcccc acaaccgtac tcaagttcat ccactttggc caaaaatgcg tctcatggcc 2160 tgcctcttgt cggggaaaaa ctcaaaatgt acagcctttc acaacaagct gaagacctca 2220 tcatggcttc ctggaggaaa gggacaacta agcataccga gtttatttgc ataaatggga 2280 aagatttgcc gagcaacgga ctgcgaatcc aattcgccct tctgtagcaa atgttcttga 2340 gttccttaca catctccatt caaatgacag caggtactca gcaataaaca ctgctagatc 2400 tgctttatca gcagcagtag actttgcaga cagttcgtac acagtagggg aacatccatt 2460 agttaagcgt ttggtcaagg caacatacca gttacgaccg ccaaaggcaa gataccaatc 2520 cacgtgagat gtgtcaaagg tgctggaact tttaaaacaa ttgagcccac ctgacaagtc 2580 gagcctttag ctattatcat acaaacttgt gatgctgtgc ctactggtga ctggaggtca 2640 gtccattcac ttaatggata cacaacatat gtcaaaatgt gaatctgctt ataagtttaa 2700 cataactgaa cagtctagac cagggcgtcc acagccagtg ttaacaattc ccagttttac 2760 agttgacaaa cgattgtgcg tggttcttca tttagaagag tatatcagta gaaccaatcc 2820 acttcggaca caaggagata caaaactgtt tattagttac accaagccac ataagccagt 2880 ggctagacca acgttatcac gttgggttaa acaagtcatg gacaaagcag gtattaacac 2940 tgaggaattt agacctcata gcacacgtgc agcctcaaca tgtgctgcat ctagacaggg 3000 aattccacta gagacaattt taacagcagc tggatggtca aacgagtgca catattacca 3060 gaaagttgtc acagacactg actttggaca tgcaacatta agttgtgctc agtagccaga 3120 tatattttga ttatattctg acgcttggaa gcaacagcac ttatttatgt aacccttttt 3180 tgctttattg tgatattaaa gcaacatgtt gttaaagttt gggttactgt ataattgggt 3240 tattggccca tgtgctttga agtctcatgg ggtctctgta tgcaaatgag gaggtagaat 3300 ttaaaaatta aacaagcctt acctgtaagg tgaagtttga tggagattct acctcctcat 3360 ttatgcatat agagatcaca tgccctccct atatatttgg cgatgggatt gagtgacatt 3420 taaactgttg ttatatggcc ctcccattaa aaataaaagg gccaatcttt aaaggaatga 3480 ctcttcgtgc gcatgcgcta tctcatgtga tctctatatg cataaatgag gaggtagaat 3540 ctcaatcaaa cttcacctta cgggtaaggc ttgtttaatt tttaaatta 3589 // ID DNA-5-7_NV repbase; DNA; NEM; 838 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-7_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-5-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-838 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-838 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-838 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 838 BP; 234 A; 194 C; 161 G; 249 T; 0 other; gggtcgtttc tcaaaagtcc cgataaaccc ggaaacccgg aaagtcaccc ggtaagcccc 60 cgataaactt tacgggtgtt tctcaaaacg cccgctattg tcgggcccgg aaaaaatccc 120 ggtaactcgc ccggtaactt acgggagctc aagagctccc gttaacttac cgggaattac 180 ttttaatgcg aaaattgata cccaaaacga tgtttttcct taatattttc agctgaattt 240 atagatcaac tattcatcta gaattggcca agttgaacta tccaatttgg tgcttttttt 300 ccgattaaat ctcgccattt tcaagttgtg tcgagttgta gtgaattttc atcacttgag 360 gaaaccatat cactgcccgg aaagaagtgg gccaatcacg gctaacatca ttttatggga 420 ttccctacca gccaatcagg tttcttttct gtcaaatgat ttgacattta gctgtcaccg 480 tgcgcctaaa aaaatgtaaa caactttgcg aaggtattgg aagttttgct acaaaatgag 540 actttatcta cttgttcttt gtcttttttt cgaaaagtgc cgatgccaca gcagtgtttg 600 gggtaccagt tgtctacaga catcgacaaa tctacgattt ttattgatat tcaataatta 660 tttagccaat ctattcatta actctgaaaa ttataatttg cttatcggga acccgtaaac 720 aaccgggacg ctaccgctag ctttgagaaa cgctcttcct cgcccggaaa agtatcccga 780 aaactctccc ggtaccctaa cgggcccggt tattaccggg agttttgaga aacgaccc 838 // ID Daphne-2_NV repbase; DNA; NEM; 4786 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Daphne-2_NV non-LTR retrotransposon - consensus. XX KW Daphne; Non-LTR Retrotransposon; Transposable Element; NVREP186; KW Daphne-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 4118-4786 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 4118-4786 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-4786 RA Kapitonov V. and Jurka J.; RT "A family of Daphne-2_NV non-LTR retrotransposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 96-99% identical to the consensus. Its 3'-terminal CC portion was originally reported as the unclassified NVREP186 CC transposable element [1,2]. XX FH Key Location/Qualifiers FT CDS 182..1021 FT /product="Daphne-2_NV_1p" FT /note="Similar ORF1 core is encoded by many FT elements from different clades, including CR1, FT Daphne/Crack, L2, L1 and Tx1." FT /translation="MASDLKAIEDLLDRKFDEKLRPMKSSLKDLSSQLAEA FT VNSLAFLHDQCDILTKKVKFLESRNTSLETENKLIKVELNKMAGDLNTTKK FT SLDDIEQYSRRDCLEIKGVPVTPTENTNDVVKEVGELMEVEILEEDISTSH FT RLPAPRPNPNQRPAKPGVHVNTPTASIIVKFARRDVRDRFYAGRKHLRDKS FT VRDIGLTRSDNKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFL FT RKNNDSQAVLISKSQDLLHLKQREDHDSQEVESANLTGT" FT CDS 1040..4351 FT /product="Daphne-2_NV_2p" FT /note="Contains the PHD, APE and RT domains." FT /translation="MSNLNEDSCRTCRQSLKKGDRAIECDQCICWFHLKCT FT CLSVKEFRYISKTNEFWLCESCRSEAFPFNSLTKPELLDLSYNSNSSCLCS FT KSLSIDYLKELRRFEILSKLGNKTNNFPTPSNEDSSDSLPCGVNFKYYSAH FT DFHSSTEISQSICHNTFSVMHCNIRSLSANFDSFHSLLAELKHPFNVIGLS FT EIKYNKDRVYSTLNTELEGYDFIFEPSNTEAGGVGFYIQNNLSYNIRSDLS FT SSSNFHEIIWIEIENKKNQNTLCGVAYRHPNSEIENFTNTLNETIDKINKE FT NKFCILMGDMNINALNCSSDKATDDFINTMASYSFQQHILQPTRITNHSAT FT LIDHIFFNSFQHHTISGNIVYDLTDHLPNFLIINKFTELPRRFKLFRRDYS FT HYDESAVVHDMQAINWEHCFSHCKDVNDYFDSFYASVERIIDKHAPLKKLS FT RKEIKFLSKPWITTGIKHSIAIKNKLYKQFLNTQNSFIHNQFKLYRNKLKR FT LLMASKEKYYEDYFSAHLKNVKEIWKGIKQIITLKASPVSIPSKIITSDSV FT LTDPTAISNAFNNYFTNIGKNLANDIPDTAKSFSYYLKKRQPNSFCLFPIL FT PNEIESEICKLNSNKSTGPFSIPTRVLKSASSILSKPLAMLYNFSIESGIV FT PDKFKIAKVIPVFKKGSALTLSNYRPISLLPIFNQIFEKLICQRLNHYLQT FT HNILYSNQFGFRPKHSTTHAVLSVVDKIQKAIELGQFSCGLFLDLSKAFDT FT VDHSILLRKLEHYGIRGIAYDWFSSYLTNRKQFTQIGSSKSSLSSISYGVP FT QGSVLGPVLFLLYINDFNNSSQTLDFNIFADDSNLFYSNKNLTNLESTVNY FT ELKHIYTWLCANKLSLNIDKTNFVLFHPPQKKVTHPIKLKINNKPIKSEKY FT IKYLGIMIDSHLNWKCHITELCKKLKRNLGALSKIRYFVNINILKQLYYSL FT VFPHITYGILVWGNTYSTTLKPLFLMQKRAIRIMTFSKFDAPSSPIFKQLG FT LLKVKDIVYFHTALFMYQHHSGTLPTTFDSFFHIISHKYNTRLSAKSSYTL FT PKARTNYGKFNIRFRGVQIWNELTQNDKDLNMKSFKKKLSDDLVATY" XX SQ Sequence 4786 BP; 1552 A; 1072 C; 782 G; 1380 T; 0 other; tgaccgtcgt catggtcggt tgtccttgga gctctggagg gaaaatttgt taagccgtca 60 agctttcttc ccttcctgct cgtctatttg ctcttcaatg tcgtatatgt attgtctgta 120 atagtgtgtt cattgaagga agtgaatatt caatttataa aagtgctttg gcactgttag 180 tatggctagc gacctcaagg cgatcgagga cctcctcgat agaaagttcg acgagaagct 240 acggcccatg aaatcaagcc tcaaagatct atcctcacaa ctggcggagg ctgtgaactc 300 gcttgctttt ctgcacgacc aatgtgatat actaaccaaa aaagtgaagt ttcttgagtc 360 aaggaacaca agtctcgaaa cggagaacaa gctaattaaa gtggaactca acaaaatggc 420 gggagatttg aatactacga agaagtccct cgacgacata gaacagtact cgaggaggga 480 ttgtttagag attaaaggcg ttccggtaac acctacggag aacacgaacg acgtagtaaa 540 agaggtagga gagcttatgg aagtcgaaat cttagaagaa gacataagca caagccacag 600 gctaccggct ccgagaccga atcccaacca gcgcccagct aagccaggag tacatgttaa 660 cacgccgact gcatcaatta ttgtcaaatt tgcacgcaga gatgttcgag accgatttta 720 tgccggtcgg aaacatctcc gagataaatc cgtacgggac attggtctca cacggtccga 780 taacaagatc tacatttcgg aaagtttgag tccaggcaac agggagctgt tcaaggcggc 840 gttaagcgcc aggcatgatc tgaagttcaa gtacatttgg acgcagaatg gaaaagtgtt 900 cctgaggaaa aataacgaca gccaagctgt gctgatcagt aaatcacagg atttactcca 960 cctcaagcaa cgagaagacc acgattcaca agaggtagag tcagcaaatt taacaggcac 1020 gtaagtcaag tacgtattga tgtctaattt aaatgaagat tcctgtcgaa cctgtcgaca 1080 gtcactcaag aagggcgata gagctattga atgtgaccag tgcatatgtt ggtttcacct 1140 aaaatgcaca tgcttatcgg tcaaagaatt tagatatata tcgaaaacaa atgaattttg 1200 gttatgtgaa tcgtgccgct cagaagcttt tccattcaat agcttaacta agcctgaact 1260 tcttgattta tcatacaatt cgaattctag ctgtctctgc tctaagagct tatcaattga 1320 ctatttaaaa gaactacgga gatttgagat cttgtcaaaa ttgggcaaca aaactaataa 1380 tttccctact ccttccaacg aagactcctc agacagttta ccctgtggag taaactttaa 1440 atactattca gcccatgatt ttcatagtag taccgaaatt agtcaatcaa tttgccacaa 1500 tacattttcg gttatgcatt gtaacatcag aagcctatct gctaattttg atagctttca 1560 ctcattgtta gccgagctga agcacccgtt taatgtcatt gggctctccg aaatcaagta 1620 taataaggac cgtgtttaca gtacattaaa tacggagcta gaaggctatg attttatttt 1680 tgaaccaagt aatacggagg caggcggagt aggtttctat atacaaaata acctctccta 1740 caacattcgc tcagaccttt cctcctcgag caatttccat gagataatct ggatagaaat 1800 cgaaaacaaa aaaaatcaaa acactttatg tggtgttgct taccgacacc ccaattcaga 1860 aatagaaaac tttacaaaca cgcttaacga aaccatcgat aagataaata aggaaaataa 1920 gttttgcata ctcatggggg acatgaatat taacgcattg aattgtagct cagataaggc 1980 cacggatgat tttataaata caatggcatc ctactcattc caacaacaca ttctccaacc 2040 tacccgcatc actaatcact ctgcaacgct tattgatcac attttcttta actcttttca 2100 acatcacacc attagcggga atattgttta tgatttgacg gatcatctac cgaatttttt 2160 gataattaac aaatttactg aactccctcg tagattcaaa ttattccgcc gggattactc 2220 tcattatgac gagtccgcgg tagtgcatga tatgcaggcc ataaactggg agcattgttt 2280 ttcgcactgt aaagacgtaa acgactactt tgactctttc tacgcttcag tagaaaggat 2340 tattgacaaa cacgcccccc tgaaaaaact ttctagaaag gaaatcaaat tcctttccaa 2400 accatggatc acaacaggca tcaaacactc aattgctatt aaaaataaac tctataaaca 2460 gtttctcaat actcagaatt cctttataca taatcagttt aaactataca gaaataaact 2520 taaacgtcta ttaatggcca gcaaggaaaa atattatgaa gactattttt cagcacatct 2580 taagaacgtt aaagaaatat ggaaaggtat aaaacaaata atcactctta aagcatctcc 2640 ggtttccatt ccgagtaaaa ttataactag tgactcggtg cttacggatc caacagccat 2700 ttctaatgcc tttaacaact acttcacaaa cattggaaaa aatctagcaa atgatattcc 2760 agacactgcg aaatccttct cttactattt gaaaaaacgg cagccaaaca gtttttgcct 2820 tttcccgatt ctacccaacg aaatcgagtc tgaaatttgt aaactcaact caaacaagtc 2880 aacggggccc ttcagtattc ccacgcgagt tctaaaatct gcaagctcca ttttatctaa 2940 gcccttggca atgctgtaca atttttcaat cgagtcaggc atagtcccag acaagttcaa 3000 gatcgctaag gtgatccctg tatttaaaaa gggttccgcc cttacccttt ctaactatcg 3060 tcctatctcc ttgctcccaa ttttcaacca aatatttgaa aaactaattt gccaacgctt 3120 aaatcattac ttacaaactc ataatatatt atacagcaat cagtttggat tccgccctaa 3180 acactcaaca actcatgctg tactaagcgt tgttgacaaa atacagaaag ccatagaatt 3240 gggccaattt tcgtgcggac ttttccttga ccttagtaaa gcttttgata ctgtagacca 3300 ctcgattctt ttacgcaaac tcgaacatta tggaattcgt ggcatcgcgt atgactggtt 3360 ttcttcctac cttacaaatc gaaaacagtt cacacaaatt ggaagcagca aatcttcact 3420 gagctccatc tcctacggag ttccccaagg gtctgtgctt ggtccggttc tttttctact 3480 atacattaac gactttaaca actcctccca aaccctagac tttaacatat ttgcagatga 3540 ttccaatttg ttctattcaa acaaaaacct aaccaattta gaatctaccg tgaattacga 3600 actaaaacat atatatacgt ggctctgtgc caataaactc tctctaaata tagataaaac 3660 taactttgtg ttattccatc ctcctcagaa aaaagtaact catcctataa aactgaagat 3720 aaacaataaa ccaatcaaat cagaaaaata cataaaatat ttaggaataa tgattgattc 3780 acatcttaac tggaaatgcc acataacgga gctttgcaaa aaacttaaac gtaatctagg 3840 agcactctca aagatacgtt actttgtcaa tattaacatt ttgaaacaac tatattattc 3900 acttgttttc ccccatataa cttacggaat tttagtatgg ggcaacacct atagtacaac 3960 actaaaacct ctctttttaa tgcaaaaacg tgcgatacga attatgactt tttctaaatt 4020 cgatgcccca tcttccccca tcttcaaaca actaggactt ctcaaggtta aagatatagt 4080 ttacttccac acagcgctat ttatgtacca acaccactct ggaactctcc ccacaacttt 4140 tgactctttc tttcatataa tttcccacaa atacaacacc cgactttctg ccaaatctag 4200 ttacacccta cctaaagcac gaaccaacta cgggaaattc aacatccgat ttagaggtgt 4260 acaaatttgg aacgaactca cccaaaatga caaagaccta aatatgaaat ccttcaaaaa 4320 aaaattatca gacgacctgg tcgccaccta ttaacccacc cacatcttca cctgtaaccc 4380 atactatcac ctaattcttg gccatatatt ccttcctttt gtttttgttt ccgctctgct 4440 tgtaccagct tgtattcttg tcgtatcctt gttgtatcct tgtcgtgtct ctatatctgt 4500 gtttttctcg tacattcttg cttatgcaca cagcctccag atctccaaac taggattttt 4560 ccctaacatt taagtgcacc ctagcccgtt tagctctcaa gctattctag ggtgcccgca 4620 ccgaagtatt gtcccccctt ggtatgcaac tctaggtttt tttttttctt tttttctctc 4680 ctctccctat caataaatat atgaatataa aaaaaaaaaa aaaaaaaaaa acaacctatg 4740 taacacttaa ttttgtgtgc aaataaaaga tgttgttgtt gttgtt 4786 // ID DNA-TA-22_NV repbase; DNA; NEM; 246 BP. XX AC . XX DT 18-FEB-2011 (Rel. 16.02, Created) DT 18-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone DNA-TA-22_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP72; KW TTAA target site; TA TSD; DNA-TA-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-246 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-246 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-246 RA Kapitonov V. and Jurka J.; RT "An old family of DNA-TA-22_NV non-autonomous DNA transposons in RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-FEB-2011). XX DR [3] (Consensus) XX CC This is an old family of non-autonomous DNA transposons: the CC genome conatains a few hundred copies of DNA-TA-22_NV that are CC ~86% identical to their consensus sequence. This transposon is CC target-site specific: TTAA target sites, with the TA TSDs. The CC genome is populated also by its young subfamily: DNA-TA-22A_NV CC (>100 copies that ~95% identical to the DNA-TA-22A_NV consensus CC sequence). Originally, these two transposons were reported as CC unclassified DNA transposons under the NVREP72 and NVREP130 names CC [1,2]. XX SQ Sequence 246 BP; 66 A; 58 C; 59 G; 63 T; 0 other; tagccgaatt cgttgttgcg cgaccgccga gaattcaaat ccatttctcg tctgggaata 60 gcgcgtagtc aatcatacca ccgtgaccaa tcaattccct tgctgtgtgc agtcaaatgg 120 tttatgacgc gacagtgaaa acatgaaagc catcgattgg tttagacggt tgattgacta 180 cgcgctattc ccaaacgaga caaggatttt ggattcgccg aggtcgcgca acaacgaatt 240 tggcta 246 // ID Gypsy-46-I_NV repbase; DNA; NEM; 3945 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-46_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46-I_NV; KW Gypsy-46-LTR_NV; Gypsy-46_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3945 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3945 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-46_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 525-525 (2007). XX DR [2] (Consensus) XX SQ Sequence 3945 BP; 1342 A; 844 C; 887 G; 872 T; 0 other; caaagctcgg aacattacat ggtgtcagaa agtgctcaaa atggaacaca tgaaaccaat 60 gggacccctg aagttggaag gaaatatcgc agaaaattgg cgaaagtgga gtcagagatg 120 gaacctctac gcaaaggcga gtggagcgga gtcgaagcct gaggctacta ggtgcgccat 180 attcctgcac acgattgggg aagacgcact agaagtgtac gacactttca cttttgcaga 240 tagtgaaacg gacaaacttg aaccgataat cagcaagttt gaggcatact gcacgccaaa 300 gaagaatgtg acgtacgagc gatacatttt caactcgtgc gcacaaaatg gtcggtctat 360 cgacgtattt gtaacagatc taaggtccaa agccaagacc tgtgaatttg gaacactcca 420 agacagtctt attaaagaca ggattgtttg tggaatcgat agtgatagta tcagggagcg 480 actactcaga aacaccgaac tgacccttga cactgccatc aatgctgtta gagccgccga 540 gacgagtaaa acgcagatag aaaatctgaa agatggtgca agtctcgaag cagccgccct 600 aaacaaaaga ggaacagcta ggagaaacca aaaacagcat aaccagcgta atcctaagag 660 agaggacagg aaaacgtgtg gacgttgcgg ttcctcccac aagccaaaag aatgtaaagc 720 atttggtaaa gaatgtttca aatgcaacgg aaaaaatcat ttttcatcta tgtgcaagtc 780 gaaggaagtc ccgcccaaga aagttcacga cttggaaaag gacagcgtct cagagagcga 840 cgactcaatt gacgagttat ttcttggcga gatcgactca acaaaaagcg acgccaatga 900 actctttgtt acccttaacg tggaaaacaa agatatcaaa ttcaaggttg atactggagc 960 tcaatgcaat gttattccag aagaaatcta caactcactg ccgcaaaaac caaggctaca 1020 agatgcaaat atcaggctga gtgcctatgg tggaatgaaa ataccgctgt tgggaaaatg 1080 ctctctcgct gtgagacgcg acggaaatga gttaaccgcg gaattctatg ttgtcagagc 1140 taacaaagca aaacccctta tcggtctaga gacatgccgg atattagaac tgataagaat 1200 cggcagaaac gtgagcgaaa taagcaaagg agatgcagaa attctcaacg aattcaatga 1260 tgtttttgaa ggacttggac tcgtggatgg cgagtaccat atcactttga gtaatgaggc 1320 tcaacctaca atccatccgc cacgcaaggt accccttagt ctgatgccca agttaaagga 1380 aaccctggag aagttgacca aaatgggtgt cataagcaaa gtggaaaaag cgactgactg 1440 ggttagcagt ttagttatcg tagaaaagaa aaacggaacc ttgcgtctgt gtttagatcc 1500 aaaggaactg aacaatgcaa tcaagcgcga gcactacaag ccgccaaccg cagagacatt 1560 gtcaagtaaa ctgagcggga aaagggtttt caccgtgatt gacatgtcca attgttattg 1620 gcacaagaaa ctcgacgagg aatcttcgta cttgtgcaca ttcaacacgc ctttcggaag 1680 acacaagttc gatagaatgc cttttggaat ttctgtagct gctgatgtag cacagaaatt 1740 ggttgatgat aatttcagtg acattcctgg agttttagcg gtacacgatg acatcatcat 1800 cgcagggagc gacaaggcgg agcacgacga agctctgagc cgtgtgttac tacgcgcaag 1860 ggaacgtaac atcaggttta accgtgacaa gatccaacta cgcgtgaatc aagtcaaata 1920 tcttggaaat attgtcacag ccgacggatt taaacctgac ccagagaaaa taaaggcaat 1980 taaggaaatg ccacaaccgg aaaccaaaca agatctacaa cgattacttg gcatggtcaa 2040 ttacctgtca caatacattc cgaatatgtc ggaaatcacg gcacctttga ggtcacttct 2100 aaagaagaac gcacaatggg tttggtatga cgaacacaaa caagcagtgg ataagataaa 2160 ggaagcgcta acaaatagcc cagtactacg ctattttgac atcaatgaag aaatagttat 2220 ccaatgtgac gcctcacaaa acggaatggg aggatgtttg attcaggagg gacaccctgt 2280 aatttacgct tcacgatcac tcacggatgc tgagagaaac tacgcccaga tcgaaaagga 2340 actgttggcg atcgtcttca cgtgcgagcg atttcaccag tttatctacg gaaatgacat 2400 aatcgtgcac agcgatcaca agccactcga ggcgataatg gctaaaccat tatctcaagc 2460 accttgtcgc attcaacgcc tacttatcag attacagaaa tacaacatca cggtacgctt 2520 tgtacccgga aaagaaatgt ttattgcgga tacgctgtca agggcatttc tgattgaaga 2580 cacggacgaa caacaggatc tcaatgagga cattgaagtt tgtgtccaca gttttgtcaa 2640 ggaaatcccg gcgacaactg acaggctctt agagctaaaa cacgcatccg aaaatgacgt 2700 gaccctacaa gagttacgaa aacaactaat taagggatgg cccagccaca agagagaggt 2760 caaaccaatc attgcacctt actggacaat tagagacgaa cttagtgagg ctgaaggcct 2820 actttttaag ggaaatcaac taattattcc tacatctatg agggaaacga tgttaaacct 2880 cattcacgaa agccatctcg gcatagaaaa atgcaaagcg cgtgccagag ctattattta 2940 ttggcctggt atgtcgcgtg acatctgcga aaaagtcagc aaatgtaaag tctgcatgga 3000 acaccagcat aagaacatca aagagccaat gctaccacat gaacgaccgg aacgaccctg 3060 gcaaaaagtt ggatctgacc taatggaact taagggaaag gactatttag ttgtagttga 3120 ttactactct aaatttattg aagtttgtct attgcgtgac aagacagccg ctacagtaaa 3180 atcacacatg aaatcgatct ttgcaaggca cggaattcct gaagaactcg tggcagacaa 3240 cgtgccatac aactcaaagg aatttaagga tttcgccaaa gactggaact tcaaacttac 3300 aacatgtagt ccccgatttc cacagtccaa tggacgcagc gagaaggctg tacagataat 3360 aaagcgcatc ctgaagaaat ctgacggtcc gtacattgca ctactggagt atcgcaacac 3420 cccagtaaca ggaatgagct actctcctgc ccaacttctt atgagccgca ctacaagatc 3480 taagcttcct gtcaacaagg aattactagt tcctagtgtc cctactggcg ttagggaaga 3540 gctaaaggca tgtcaagaca aacaagccaa atacttcaat agaggtgcaa aaccactagc 3600 accccttaca cctaacgagg gagtgagagt ctatgacaag aagaaatgga taccagcaac 3660 tgtcaaacaa gaagctggaa ctcctcgctc atacatcata cagacagaga caggtcagga 3720 gctaagacga aatcgacgac accttcttaa gaccaacgaa caagctcccg ccgatcaaag 3780 agatctcgca aggcacctac tagatatgga tacgacgaat agatttgatt tttgatatag 3840 actatgaaca ctataataat tttatttcag cttttggaat atagcgtgta aattttatta 3900 atttgtttta aatgcctttt aaatcaaact ctttaagaag ggaga 3945 // ID DIRS-40_NV repbase; DNA; NEM; 935 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-40_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-40_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-935 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-935 RA Kapitonov V.V. and Jurka J.; RT "DIRS-40_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 437-437 (2007). XX DR [2] (Consensus) XX SQ Sequence 935 BP; 236 A; 235 C; 183 G; 280 T; 1 other; ttatacagca ggaaacagag gcttcgcaat acctgggcct ctaacgctgc atcaacttag 60 cagtcctccg atgaaaagac atattttgaa ttctgctcac tgttcagagc acacgttgta 120 caccaatttc cagcagataa ggaaaccctt actcactttg tcgcatatct tgctaaaaca 180 ttaaaatatt cctcaattaa gagctactta gctgccgtta gacatctgca catacgcaat 240 ggccacgact tggacctnta aaaggttcct acgtctccag ttgttttgta ggggcatcga 300 gagatcccag ggtgcgtcta ccagaactcg ccttcccatt actgttaatc acttaaaact 360 gttcttttag cttcttgcca ttccaacttc agataactat gattccatta tggtgtgggc 420 cgccatgact ttagccttct ttcacttggg agaaatgaat tgcagttcca cttatccgcc 480 cgaagtgcat ctctcacccc agaagatata tacttccttc ctagtgattc catgtctgta 540 cgggtaaagg tgtccaagac tgacccattt cgcacttggc agaagacaat catcgtaggc 600 aaaacaaaat ctttgccctg taaatgccct gcagacttat ctatctctta ggcactactc 660 ttaccaaagt tgcgttttct gagactaggc agctgctttc catgtcttga atcatcaaac 720 tatgccggcc gcagctatag gattggagct gtaaccacag ctgcatcagt tggcctttct 780 ccctggttaa taaaactcct aggacgttgg tcctctgatt gttatgagcg ctacattcgg 840 tgcccacatt ccctccagtc gtcagcttag tttgcttgat gtagtactat gattttcttg 900 gtgaggaggc gtttgtctat gggtaataca cgtat 935 // ID L2-24_NV repbase; DNA; NEM; 3593 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 21-JUL-2009 (Rel. 14.08, Last updated, Version 2) XX DE Starlet sea anemone L2-24_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW L2A; Non-LTR Retrotransposon; Transposable Element; CR1; L2; KW NVREP444; L2-24_NV. XX NM L2-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3593 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3593 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 719-719 (2009). XX RN [3] RP 1-3593 RA Kapitonov V.V. and Jurka J.; RT "L2A clade of non-LTR retrotransposons in the starlet anemone RT genome."; RL Direct Submission to Repbase Update (21-JUL-2009). XX DR [2] (Consensus) XX CC This is a very young family (99% identity between the consensus CC and L2-24_NV copies). This family was classified originally as a CC member of the L2 clade [1-2]. Later, it was reclassified as a CC member of the L2A clade of CR1-like non-LTR retrotransposons [3]. XX FH Key Location/Qualifiers FT CDS 130..3270 FT /product="L2-24_NV_1p" FT /note="endonuclease and reverse transcriptase." FT /translation="MDLPKVPSLGVAFPWVPQLDSSDMTEIAADGSFDAPC FT CADVTPTVNNSLTSELANLPPYVLPDLIEENKHLETLRKCNTKDILLCHIN FT INSIQNKFEELSRLIKKLNVHIMFVSVTKIDSSYTNNCFALPGYSIHRDDR FT KKGGGGVIAIVSACLTYKLLNITKKYKTIEPIAIQTKIKSETVTMLCPYRP FT PKPLTGNYQILLENELSDICNWASLQSNNVILVGDLNLNRLRPDKPEGKLL FT PDLETEQGFLCTITKPTRIEMRANKLTLSLIDVLLVNKPETIKHSGNYYPS FT LSDHALVYGILNDRVNPNKPKVISFRSYKFFDCDDFKMQLNVAPWHVGDIF FT DDVDDKVYFWSSLFQSITEEAAPMERMKVRDKDVPFMTSEWKQAIRAKRKA FT TSKFLKNKTPENWENKRAARNEATRQRRIAIKHYWRKQCEHLKEKPREFFK FT TFKPFLSSKNTTRDNEIHLNDVDGTLVKDQSRVAEILVDYFSTIADGIGGD FT KAKLSSPDDFMDHPSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK FT AAGCDAIPPKLLKIGETELAKPLTSLFNSCIKSKVWPGSWKLGDWTPVFKK FT DEKYSKENYRPMTVLPCVDKVFEKLICSQVAEGFERHFFTNSSAYRKSHSC FT ETTLINLIEGWKKARDNKLSVSILSTDMSKAFDSLHPPLLLSKLKAYGFQE FT NLIALLGSYLSERNNRVRLGRHVSSYKNINRGCPQGSALGPLLWNIFQNDL FT CYHIDGSLSMYADDHQIYHTGSDLSTVISDLRVSADHASQWYDSNLLAGNL FT KKYQVLHLTGNRRKNADANAALYVHGEIINDTNELKLLGVTIDDQLNFSTH FT INEICKRASQRAGVLMRLRNLIPTNAKLQLFKSAVLPHLTYCHLVWHFCRS FT SDKRKLERVQERGLRAVFKDKSSSYANLLERAKLPTLLNRRLQDIAILMYK FT VHNNLCPPNICGIFNRHSANYNLRQADFSLPRYNTTTYGKHSLRYLGPKLW FT GKLSVTIRSSPSLNTFKRKIREIDISLLIDDGTKCCSLCKN" XX SQ Sequence 3593 BP; 1126 A; 792 C; 681 G; 994 T; 0 other; tgatgagtgt gaaaaaccag ttattaaaaa tcacaaacgg tgtatatgca caacatgcgt 60 agctttcacg cacgcaaagt gttctagaat atttgacgtc aaactgatca aggctgccac 120 acctaaggaa tggacctgcc caaggtgcct tctctcggag ttgcctttcc atgggtgccc 180 caactcgata gctctgatat gacagaaatc gctgccgatg gttcatttga tgcaccatgt 240 tgcgccgatg tcactcctac ggtcaacaac agccttacct ctgagcttgc taacctacct 300 ccctatgttc tgcctgatct tatcgaagag aacaaacatc tagagactct aagaaagtgt 360 aacacaaaag acatactttt gtgccacata aatattaaca gcattcaaaa caaattcgag 420 gagctatcca gattaataaa aaaactgaat gtgcatataa tgttcgtaag tgtaacaaag 480 atagattctt cctatacaaa caactgtttc gcacttcccg gttattctat ccaccgtgat 540 gaccgaaaga agggcggagg aggggtgata gcaattgtct cagcttgtct gacatacaag 600 ctgcttaata ttacgaaaaa atataaaact atcgaaccta tagccataca gacgaaaata 660 aaatcggaga cggtaacaat gctttgcccc tatcgccctc cgaagccgct cactggtaac 720 tatcaaatcc ttttagaaaa tgaactaagt gatatttgta actgggctag cttacaaagc 780 aacaatgtca tcctagtagg tgacctcaac cttaatagac tcagaccaga caaaccggag 840 gggaaattgc ttcccgatct agaaaccgag caaggttttc tttgcactat tacaaagcca 900 acaagaattg aaatgcgtgc caacaaactt acactgtctt tgattgatgt actccttgtc 960 aacaagccag agacaataaa acacagtggt aactactatc catcgctcag tgaccacgcg 1020 cttgtttatg ggatcttgaa tgaccgagtt aaccctaaca aacctaaagt tatctctttc 1080 agaagttata aattctttga ctgtgatgac tttaaaatgc agttgaatgt tgcgccctgg 1140 cacgttggcg atatctttga cgatgttgac gacaaggtct atttctggag ttccctcttc 1200 caaagcatca cagaagaggc tgctccaatg gagcgaatga aagtgcgtga taaagacgtc 1260 cctttcatga cgtccgaatg gaagcaggcc attcgagcca aacgcaaggc aacatctaaa 1320 ttcttaaaaa acaaaacccc tgagaactgg gaaaacaaaa gagcagcccg caatgaggcc 1380 actcgacaaa gaagaatagc cataaagcac tactggagga aacaatgtga gcatcttaaa 1440 gagaaaccta gggagttttt caaaacgttc aaaccttttc tcagctctaa aaatacgact 1500 cgagacaatg aaattcatct caacgatgtc gatggaacac ttgttaaaga ccaaagtcgc 1560 gtagctgaga tactggtaga ttacttttcc accattgcag acggtatcgg tggcgacaag 1620 gctaaattgt cttcacctga cgatttcatg gatcatccca gcacaatacg catcttggat 1680 gtgtgttcta acaccactcc ttgccgtgag ctgcgacctg tcacggaagg ccaggttttg 1740 aaggaacttc actcccttaa acctggaaaa gcggctgggt gtgatgccat tccccctaaa 1800 cttctaaaaa taggtgaaac ggagcttgct aaacctctta cttctctttt taattcatgc 1860 atcaagtcaa aggtgtggcc tggctcatgg aagctcggtg attggacccc ggtatttaag 1920 aaagacgaga aatattcaaa ggagaactat agacccatga ctgttttgcc ttgtgtagat 1980 aaggtctttg aaaagcttat atgctcacaa gttgcagagg gttttgaaag acactttttc 2040 actaactcct cggcatacag aaaatcacac agctgtgaga cgaccctaat caatctaata 2100 gaaggctgga aaaaagcaag ggataataaa ctgtcagtta gcatcctttc aacagatatg 2160 tctaaagcct ttgattcact tcatccacca ctgcttctga gtaagcttaa agcttacggc 2220 ttccaagaga acttgatagc actactgggt agctaccttt ctgaaaggaa taaccgggtg 2280 cgcctaggcc gccatgtcag ctcatacaag aatatcaatc ggggatgtcc acagggttct 2340 gctctaggtc cactattatg gaatattttc cagaacgacc tatgctatca cattgatgga 2400 agtttatcca tgtatgctga tgatcatcag atttatcaca ctggaagcga tcttagcacc 2460 gtgatttcag atctcagagt gagtgcagac catgcttctc agtggtacga ttcaaacctc 2520 ctagccggca atctaaaaaa gtatcaggtt ttacatctta ctggtaatcg ccgaaaaaac 2580 gccgacgcta acgcagctct ttatgtgcat ggtgaaataa taaatgacac taatgaactc 2640 aaactactag gtgtcacgat tgacgaccag ttaaatttta gcacccatat caatgaaatc 2700 tgtaaaagag ccagtcaaag agctggtgtt ctaatgcgcc tcaggaatct tatccccacc 2760 aacgccaaac tacaactatt taaatcggca gttctgcctc acctcaccta ctgtcacctt 2820 gtgtggcact tttgccgatc aagtgacaag cgcaagctcg aaagggtaca agaaagagga 2880 ctcagggctg ttttcaaaga caaaagctct agttacgcta acctcctcga acgggctaag 2940 ctacctaccc tcttaaacag acggctgcag gacattgcta tactaatgta caaggtgcac 3000 aataacttgt gccctcctaa tatctgcggc atttttaaca gacacagtgc caactataat 3060 ctaaggcaag cagatttctc ccttccaagg tacaacacca ctacttatgg aaagcactct 3120 ttaaggtacc ttgggccaaa gctttggggg aaactgtcgg tcactataag atcgtcaccg 3180 agtttaaata cttttaaacg caaaataaga gaaatcgaca tttccctcct aattgatgat 3240 gggacaaaat gctgctcttt gtgcaaaaat taataactat tttaaaattc tacatttata 3300 cgatttttta ttttttttat ttattattat tattattttt tattattttt ttattctatt 3360 aatatatttt cttttattta tatcttatat taattaaatt agttataaag tagtagtagt 3420 atcaatataa agtatcagta tatatagctc ttaattttag tatttacaga tatatatata 3480 tttttcctct catttcgatg ttttggttgt ggccccatat tagtccggac ttcgtttcct 3540 gagctagacg gtctccgaca ctttaataaa gtttatcatc atcatcatca tca 3593 // ID Helitron-N3_NV repbase; DNA; NEM; 921 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N3_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N3_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-921 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-921 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N3_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 599-599 (2007). XX DR [2] (Consensus) XX SQ Sequence 921 BP; 199 A; 165 C; 161 G; 230 T; 166 other; ctcgggctac ctgtggtagc acgagtctag gtttaccttt cctataagtc tatctatcta 60 tccatgtcga aaacgtgtaa gcctgcgatg ctcagaggtc tgcggtatac tctgcctgaa 120 agcgaggcgg cttttgtgga agactctttt cgttcgcgaa attcggaggg acgctcacta 180 ctcacacaaa tgtacacgcc gtctgcgata gacccacact aaaagatgtg tataaccgta 240 tattttggcc agggttgttt caaggactgt ctagcatgtt ctataaccag atatttgata 300 aagtttgaat tgttttgcta taaagacacg ctccgcctcg gccttctttc tctgcagctc 360 gtaatgcaaa tatttcttag ttctaacaac ttccgatgga cacatgtgat tccgaaagaa 420 gaagagaatc aataacagcg aagataagtt tggataagtt ttgtgtttat tgttttgtat 480 gcaattttga acagtgtctc aagcatttta tcgctcgtta atcgctcgct atcagtagcg 540 agcgtgtctt atcccaataa agagtcaaat ttattacaag aatgccggtc tcgttatgct 600 aaatcccata ctcttcagta tgtctagcac cgtattacgg cgtaannnnn nnnnnnnnnn 660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 720 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 780 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nttttagtgt acgagccccc gagaaaacag 840 ctcaccagca ggtacaaaat gcagactaca tttttcggtg attccttttg tagcccgagt 900 taacgctggt gcagcgtcta g 921 // ID DIRS-31_NV repbase; DNA; NEM; 5678 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 2) XX DE Starlet sea anemone DIRS-31_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-31_NV. XX NM DIRS-31_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1693-5678 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1693-5678 RA Kapitonov V.V. and Jurka J.; RT "DIRS-31_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 427-427 (2007). XX RN [3] RP 1-5678 RA Kapitonov V.V. and Jurka J.; RT "Update of the DIRS-31_NV consensus sequence."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 5678 BP; 1396 A; 1221 C; 1311 G; 1750 T; 0 other; ggaaatattt gtttgcaaat agaaatttta tgctttattt cgagcactgt ttagtagcat 60 gtatgttatg taatattatt tgtggtcgcg tgtcagcacc atgtctgtta ggaggacaaa 120 gaggggggtc aattaattgt gcattatcac atacacgtga ccgcttagca aggatcactt 180 gtcttctgta actcgttgag aacagaagtg ttttttgagt gtgccaccat attcggaggt 240 aagttgacct tgtattatca ttctctgttc gaattgctat caagttatag gtgattcgaa 300 ctttcatatt tctgatttgt cagaaatttc gtttgttgtc gtaaatctcg ggctgtttag 360 gcattactcg cggcgcatct cagcacgcac gtggcggctg agtattgttt agtcatggca 420 ggtagtgccc ctaaggtcct tattttaggt cattccttcg ttcggcgttt aaaaagtgat 480 atttctttgc gttttgatca tcgggtaagc aaggatttta aactacgtgg caccgcgacg 540 gtttgcttgc acggcgttgg cgggcggacc gtgagcaaac ttcgcagcta cgatctgcat 600 gtagtcagga gtttcagtcc tgatgtggtc atattggaaa tcggaaccaa tgaccttact 660 tttttaagtc ccgaggggtg ggctcagcta tagaagagct cgtgcgggta cttttggatg 720 aatatgaagt gcgggtcgtt tgtgtgtgtc atgtcattcc gcgtggcctg tcacaccgcg 780 accatggtat tttctttcag cgcgctcaaa ttctaagcca ttatgtcgct gtggtactgg 840 gattatttcc taatgttttt tttgctggtt tcatcgccca ttttcacatc cttcgaagga 900 tttttacgcg gctgatggcg tgcatgtaaa tcacgccggg cagtatttgc tttaccgcag 960 ttacagaggc gccattttga aagcattgtc tttcctttaa gcttatattt ccggtaccgc 1020 tttagcgtat actcaaagta atattttact agtcctggac aagttttcgg ttaattgccg 1080 ataggcagtc accaaacctt tattaaccgt tgtgtgcatg gagcgtttgt tttgcttcat 1140 ttttgttcac gggatgatcc ggcgggccgt taggccattt cgcgggcgct agcccgctgg 1200 tttttgagga ggtgtttctt tgtttgatat agactcacct tccgtttgtt tggtgtttta 1260 tccaccttgt ttatacggat tcgtccccgt gcaacacatt tcttatgtgg caatttaggg 1320 gagtcaatgc gtcgaccttg cgtctgacag actttctctt tgccaaattt tctgttacag 1380 ttgttggtcc aggactggta aaatatgctt tgtggaattg agtaacaatt ttcctttgag 1440 ttgtttcatt attatttgtt tttcactcca cattaattgc attttctttc tttttatttg 1500 gatttattgc aatgagttct gcggccccta agcgttccag gcgtttagca gccagacagg 1560 ttgggggacc caaacgtggt agaactaacc gaaacgctgc agcagatgct ccagtcaggg 1620 agacgaacat cacccctcag gaggacagaa caccccagtt cagggggcgg aaacgggcca 1680 ggaccagaat tacccagacc aacgactcca atgtatcaga catccagtca aacaacaccc 1740 ctcaggagaa ggactcgtcg aatgctcaag atgagataca ccagacctct ccatcccagg 1800 ttcagatccc tgagagtgtg attcaagaag tggtgcagcg ggtaactgca gagttgtcca 1860 agcagctcct accctgtcca tcaacatcaa ctcaacacca ggtgaagtga ttgtggagga 1920 ggctattgcc gcagcacgag cagctcacac cggccaacct gcgatgcaag gtacaggtcc 1980 tgctgccatg ccaggtaacc tcttctcctc ccccagtttg ccggtggatg ccagggtatc 2040 tgacaagttg ccaaaatttg gcaaaatgag tttgtcgagt ttgggctgct gctggccaat 2100 cccatcctat aagggaaata ccagcttact ctctcagcct cccaaaacgg ggccatgcca 2160 gcgttaaacg ttgagccagt cagtaaaacc aaaaaatatt taagcataga gaattggata 2220 tcatgtttcc atatttttgt gggtgtctat acccaaaagt attgtcatga ggcccctgct 2280 ctcatgaaat acggtgagac cattcaggac cttgccagcc ggggacatga ttggaggtac 2340 tacgatgaga attttaggtt tttgcgccag ggtcagccaa gtgcttaccc ctggcaaaac 2400 acacactggg agctctggct ccggtcacag cgaccttctt cagccaaacc gcagaatgag 2460 agccggaatt tgaggggtaa cagtcttgtc aggggatatt gctatcgatt tagtaggggt 2520 aacccttgtt caggtgactg tggttacaaa cacaagtgcc ataagtgtga tggcgaccac 2580 aggccagggg cctgtacttt tcgtgcccct aagagaacct ccaatcattc cccggctgca 2640 agcccccagg ctaaaccaca acaaccaagg tcttgagcta cccactcctg tcagtgctga 2700 taggttggcc tcattattag taggttatga tgcggttaag gtttctattc ttttcaacgg 2760 ttttcagttt ggttttgctt tgcattacga gggcagtcgt gaggccgtag ataaaaaact 2820 tataacagaa ttgcaagctg ggcgtttagc cggacctttc gtcactccac ccttggtccc 2880 tttcagggtt tcgcccctag gtttggtacc caagaagttg cctggggact tcagattaat 2940 tcatcacctg tcatacccca agggcttgtc tgtgaatgat ggcatttcat tggaacattc 3000 cacagtgcgc tatgccacga ttggggatgc catttccaag attagggctg cagggcgggg 3060 gtgttttttg actaaaaccg acatcaaaaa tgcctttagg attattcctg tccgacctca 3120 ggattataat ttacttggca tgcaatggaa agggtttact atcatgatcg ttgcatgccc 3180 atgggctgct ctagctcttg caaaacattt gagttattca gcactgcctt ggagtggata 3240 gctttggaga aattgcgaat accacaggta gtccacctac tagacgattt tctttttatt 3300 tcgccaagtc aacacttagg tgtcatgcat ttgaatttat ttttggatgt ttgtaattat 3360 ttgggagtcc caatagcccc tgaaaagaca ctagggcctt ccactacatt atcctttgct 3420 ggaattgaac tagatactat actgtttgaa gcacggctgc ctgtagacaa gattcagaag 3480 tgtttagata ccatctctaa atttctgact agaaagaaag tcacattgag ggagctacag 3540 tctttgaatg gcctactgaa ctttgcatgt tcagtggttg tcccaggccg tgcatttctt 3600 aggagactta tcgatttgac aataggcatc aatgcgcctt tgcattacat taggttatca 3660 agggaggtca aggcagattt aagggtttgg cagtgtttcc ttgaagattt caatggtaaa 3720 tcattctttt tggaggatac ctggcacagt tctgataacc ttaagttata cacagatgca 3780 tctggagcta taggttttgg ggctgttttc ggaaataagt ggtgctatgg tacatggcca 3840 gacaactgga agcatcgtaa cattgcgata ttggagtttt atcccatagt tctcagtctc 3900 ttactctggg gcaatcacat gagcaatagg tgtatcctat tcttgactga taatgaagca 3960 ttagtacatg tgataaataa gcagtcctgt aaggataagg aattgatgtt ttttgtgcgg 4020 caattagttt cgaaacacat tcctggtgtt cggaacagct tagcagactc cttatctcgt 4080 ttacagcttc agagattcag attaatggct cctcccacag tggatcagct gccagcggag 4140 attccagccc atctgcagcc tcagaacttg caactgttgt aactaaacta ttgcagtcta 4200 gcttacagcc atcttctatg ccaatttata ggagagcttg gaaccttttt tctcagttta 4260 tttatgctac caacattgcc ttttcagcaa cccttcctat ttcaccttcc acattagctt 4320 tgttcatagc atatcttttt gacaagaatt atgctcccgc aacagtgaat acctatgttt 4380 cagccttagg ctatctacat aggctttcag atttgccaga cccttctaaa gcctttttca 4440 ttttgcagat gcttaagggt tacggaaaaa taggtttccg tttagattcg cgccttccaa 4500 taaccctccc aattcttcat aaactcatag aggctgcaaa taatttctca ttgagtagtt 4560 ttcttattgc gcggttccaa gctatgtgtc ttttagcttt tcatgccttc ttacgagttg 4620 gtgagataac cacctcctcg ggtaacaaag gtaatccccc tcttgctatc tatcaaatta 4680 ccaaaatggt caatgaacaa aaggaaattg tagctcttaa gcttaccttt ggtaatttta 4740 agcatagtta caatcagcac ccattttcaa tcgaagtatc gcgtaggaat gatgtttgtc 4800 cggtacaaca tattatgaag tatttatctc tccggggtag tgggccagga cctattttta 4860 tttctgcgga tggttcccct gtacctagat cagaatttac ggacaggctt tcagttgcca 4920 ttaaatcatg tgggttagac ccctccagat acaagggcca tagtttcaga ataggtgctg 4980 cttctaatgc tgcagatgct ggcatgtccg atgcgcagat tagggcctta ggccgctgga 5040 aatcaaatgc atttcttaaa tatattcgca tccaatcagt gtccacatct gtttagaacc 5100 agaaggcaac ttgcaggggg agttgtcctt cactcttggc cctgaactga ttctttgtct 5160 agcaagggca gcggagattt cgtttcgggg tcaagagtac attagcattt gcaacttggt 5220 atctggctag caaaggcggc aggtttaatg ctgcatactt tttacgcaac ttgcaagggc 5280 agttgccact cattcttggc tctgaagtgg ggccttgtct agcaagggca gcggggttct 5340 ctatttcaga gccaatgatt tgtcaataac agttggatta tagttatcaa taaggttgtt 5400 tttcctaagt atgtgctgtt tttctttggg tggggctagc atcatgtttg tgatgctttt 5460 ggcgttttgt tgccctcacc tttactgggc taagataatt gaaaatattg taaatataaa 5520 gtgaaaaaat aattatatta aatacggctt tgggcgtggc ccatagccaa ttaagtccat 5580 acaatggtgt ggtctacatt gatcggggtt gggcccagta aactagcttc aggaaaagca 5640 gcattttacc ttgtaattgc gagagagaaa agcataaa 5678 // ID RTE-7_NV repbase; DNA; NEM; 3335 BP. XX AC . XX DT 17-FEB-2011 (Rel. 16.02, Created) DT 17-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone RTE-7_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3335 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3335 RA Kapitonov V.V. and Jurka J.; RT "RTE-7_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Direct Submission to RU (17-FEB-2011). XX DR [2] (Consensus) XX CC Its 3' terminus is comosed of (AGGTAAC)2. XX FH Key Location/Qualifiers FT CDS 280..3324 FT /product="RTE-7_NV_1p" FT /note="AP endonuclease and RT domains." FT /translation="MTRRGQSHPDAPGLTKPLVHPKHAMRIGNWNVRTLYS FT SGNVAQAAREMGKRDIDIMGISETHWTGQGKMQLRDGETMVYSGREDNIHR FT EGVGILMSKNAAACLIEWTPWNERMIQARFYSRHIQLTIIHIYAPTEDADE FT HLKDEFYTRLQEVLDSRNQHDMLIITGDMNAKVGDQNWDYERVMGKHGLGV FT RNDNGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVLVN FT KRFRNSVKDTRVFRSADVGSDHYLVCATVKLRLRKDPKRKGNIRVKYDTSK FT LTEKEVRNTFNIKLRNRFQALEQEDEEERGEEVVDAKEEVERDFTIMKKAL FT LEVAETVLGKPRKKNKPWISGESWSLIDERQQMNEKILSTRSERVKGQLRK FT KYREKDREVKRSLKADKKKWLEEIASEAEKAARSQHMKTLYGLTKKLCNER FT PRHSTAVLDKDGNLLSKKEEIQRRWTEHFREVLNREQPDNPIEPEDEVEFE FT FGELIEEISVNEPTFGEVKDTITTLKNGKSPGIDNITAELLKADPEFSAER FT VHKLLVKVWRHETIPNDWKKGLIIKLPKKGNLKECKNSRGITLLSIVGKIL FT GRIVIDRIRNGVDKKLRKEQAGYRRGRGTTEQVFILRNIIEQVNEWQATLY FT VNFIDFEKAFDSVHRESLWVIMEKYGVPEKIIRIVRLFYEDFQCAVEDQGE FT TGEWFNIKTGVKQGCNMSGFMFLLVMDWILRRSVGKGENGIRWKFTSKLDD FT LDFADDIALLSSTKHHIQEKTAKLDGEARRAGLKINLEKTKMLRINAKQHG FT NIVINGKEIEDVSEFTYLGAKVCREGGGMKDLRNRLSKARSVYTRLKRIWN FT SKKIMRRTKIKIYKSLVLSVLLYGCETWKMNKKDDKLLDVFQQKCLRRILK FT ISWEDHVTNEEVQRRAGVHQLSSEVKRRRWKMIGHVLRQGRENDCSVALTW FT TPEGRRKQGRPKTTWRRTVERERGEAGWRNWDEVRSKAADREKWKSTVKAL FT CATRHEEDR" XX SQ Sequence 3335 BP; 1200 A; 526 C; 932 G; 677 T; 0 other; tcctcgatgg gatcgccacc ttatcgtggt gagggtgttt gtgtgtccca atgacctcta 60 gagctatgtc ggcgggagta ttttactcct ggcagggaca cccatgccga acaggtcgaa 120 aggtaggggc cagacgaaga gtgatccact ggtcctccag gttgggggtt gggcaaaggg 180 ttgataaccc tctcccataa aaaatagctt atcacagaaa ccagaagcag agcaaattca 240 cttgggaaga ccgtggctgc atctcatgaa agagattgta tgacgcgcag aggccaaagc 300 catccggacg cccctgggct gactaaacca ttggtccacc caaaacatgc aatgagaata 360 ggtaattgga atgtcaggac attatatagt agcggcaatg ttgcccaagc agcgagggaa 420 atgggcaaga gagacatcga catcatggga atcagtgaaa ctcactggac aggccaaggg 480 aaaatgcagc tgagagatgg cgagacgatg gtttattctg gaagggaaga taacatccat 540 agagagggag tagggatcct catgtccaaa aatgcggcgg cttgtttaat agaatggact 600 ccttggaacg agagaatgat tcaagcaaga ttctactcca ggcacattca attgaccatc 660 attcacatat acgcgcctac agaggatgca gacgaacatt taaaagatga gttctataca 720 cggctgcagg aggtactaga tagcagaaat caacacgaca tgttaatcat cactggtgat 780 atgaatgcaa aggttggcga ccaaaactgg gactatgaaa gagtcatggg gaagcatgga 840 ttgggagttc gaaatgacaa tggagaaaga ttatgtgaat tgtgtgacct taacgaactt 900 gtcataactg ggacgctgtt cccacataga accattcaca aggcaacttg gatttcacca 960 gatggaaaga caaagaacca gatagaccat gttttggtaa ataagaggtt taggaattca 1020 gtaaaagaca caagggtttt tagatcagcg gacgtaggaa gtgatcacta cttggtgtgt 1080 gcaactgtaa agctaaggtt aaggaaagat ccaaaacgga agggtaacat cagagtgaaa 1140 tatgatacat ctaaattgac ggagaaagag gtaaggaaca catttaacat caaattaagg 1200 aatcggttcc aagcattgga gcaagaggac gaagaagaga gaggggaaga agtagtagat 1260 gcaaaggaag aagtggaaag ggactttact ataatgaaaa aggcactctt ggaagttgca 1320 gagacagttt taggtaagcc acgaaagaag aacaaaccat ggattagcgg agagtcttgg 1380 agtctgatag atgaaagaca acagatgaat gagaaaatat tgagtacacg atcggagaga 1440 gttaaggggc aattgaggaa aaagtacaga gaaaaagaca gagaagtgaa gcgaagtttg 1500 aaggcagaca aaaagaaatg gttagaggag atagcatctg aagctgaaaa ggcggcgcga 1560 agccaacata tgaagacctt atatggattg acgaagaaac tatgtaacga gagacctagg 1620 cacagcaccg cagtgttgga taaggacggt aaccttctca gtaaaaaaga ggaaatacag 1680 aggagatgga cagaacattt tagggaagta ttaaatagag agcaaccaga taaccccata 1740 gaaccggagg atgaagttga atttgaattc ggagaattga tagaggaaat atccgtcaat 1800 gaaccaactt tcggagaagt aaaagataca atcacaacac taaagaatgg aaaatcgccg 1860 ggcatagata atatcacagc tgagttgctg aaggcagacc cagaattctc ggccgagcga 1920 gtgcataagc tacttgtaaa agtgtggagg catgaaacca tcccaaatga ctggaagaaa 1980 gggcttataa taaagctacc aaagaaagga aatttgaaag aatgtaagaa ctcacgagga 2040 atcaccttat tgtccatcgt agggaagata cttggaagaa ttgttattga caggatacga 2100 aacggagttg acaaaaagtt gagaaaagag caggctggct atagaagagg gagaggaact 2160 acggagcaag tatttatact gagaaacatc atagagcaag tgaatgagtg gcaggcaact 2220 ttgtatgtta atttcataga ctttgagaaa gccttcgatt cagtccatcg tgagagtttg 2280 tgggtaatta tggaaaagta tggagttcca gagaagatta tacgcattgt gaggctgttt 2340 tatgaagatt tccagtgtgc ggtcgaagat cagggtgaaa caggagaatg gttcaacata 2400 aagacggggg taaagcaagg ctgcaatatg tcgggcttta tgtttctatt ggtcatggac 2460 tggatattgc gaaggtcagt tggaaaagga gaaaatggaa tacgatggaa atttacatct 2520 aaactggacg atctagactt tgcggacgac atagcattgc tttcctcaac aaaacaccat 2580 attcaggaga agacagcaaa gctggacggc gaggctaggc gagcgggatt gaaaataaac 2640 ttagagaaga cgaagatgct aaggataaat gccaaacagc atggaaatat tgtgatcaat 2700 ggaaaagaaa tcgaagacgt cagcgagttt acgtacctag gagcaaaagt ttgcagagag 2760 ggtggtggaa tgaaagatct cagaaataga ttatcaaaag caaggagtgt gtacacaagg 2820 ctgaaacgta tatggaactc aaagaagatc atgagacgga caaagataaa gatttacaag 2880 tcgttggtac tttcggtttt attgtacggt tgcgagacgt ggaagatgaa caagaaagat 2940 gataaattgc tagatgtatt ccaacagaag tgtttgagaa ggatattgaa gattagttgg 3000 gaagaccatg taacgaatga agaggtacag agaagagctg gagtacatca attgagcagt 3060 gaagtgaaga gacggcgatg gaaaatgatc ggacacgtgt tgagacaagg aagagaaaat 3120 gactgcagcg tagcattaac ttggacacca gaaggcagaa ggaaacaggg aagacccaaa 3180 acaacatggc gaaggactgt ggaaagggag agaggcgagg cggggtggag gaactgggac 3240 gaggtgcggt caaaagcagc agacagggaa aagtggaaaa gcactgtgaa ggccctatgt 3300 gccacacggc acgaggagga caggtaacag gtaac 3335 // ID DNA-9-3_NV repbase; DNA; NEM; 228 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-228 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-228 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-228 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 228 BP; 52 A; 61 C; 72 G; 43 T; 0 other; tagcctgctt gcaggcggta ctcggtgtta tcatcgcgga aaaccctctc cgttcggtga 60 tcgggcgcca tcttgtattt taagccgcgt ggttcctggg ggcgagcgca aaaacggacg 120 cagggcaggg ggggaaccac gcggcttaaa atacaagatg gcgcccgatc accgaacgga 180 gagggttttc cgcgataata acaccgagta ccgcctgcaa gcaggcta 228 // ID MuDR-N4_NV repbase; DNA; NEM; 1016 BP. XX AC . XX DT 11-MAR-2011 (Rel. 16.03, Created) DT 11-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE MuDR-N4_NV non-autonomous DNA transposon - consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW 9-10 bp TSD; NVREP22; MuDR-N4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1016 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1016 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1016 RA Kapitonov V. and Jurka J.; RT "A family of MuDR-N4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (11-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~95% identical to the consensus. It was reported CC originally as the unclassified NVREP22 transposable element CC [1,2]. The genome contains only one copy of the corresponding CC autonomous MuDR transposon (scaffold_214, pos. 227984-237567) CC that preserved remnant of the MuDR transposase. XX SQ Sequence 1016 BP; 327 A; 181 C; 216 G; 292 T; 0 other; gggaagcaat ttcccacgga cgtagattgt ggtcgagtcc gcggactccc agcggtcata 60 cccaacctca cagtcggaat tttccgatca ccatctccgg aaagtgcgag attgtcggag 120 aaatccaaga tggcgatccg acttttgtgt gtggtgacag accatataaa tatctagtct 180 tagtctactc aatttagtta gtgtttatta atttatatgt cgtcaggcag attaaaaaat 240 taaatgagca agaacggacg agtgagtcag ccaattagtt tcctaatctc gacttaggaa 300 cgcgcgggtt cgttgttttg cgttttatct ctggtaatca taacaagaac gtaaacgttt 360 agcaggcgcg tattcagaat tagctgaggg gggagtggag gggttgcgca gccataggta 420 tcatataata cctatctgaa aaaaaagcca attcatgatg taatttctgt agactcttct 480 gtgagtttta attgaaaatt ttaaagtact tataataagt tacttatgat gacgagtata 540 tatccatgta atccatgtaa accctcaaaa ttaattgata tagaaaagca ggtatcaaag 600 acatgttgca ttgtgaataa aacttcatat gctaagaggt acccattaaa gtaagtaaaa 660 taagtactca attaagctta cgctaataac tttagtaaaa tagaacaaag gaaaaaaaag 720 taaaagcacc cgccagctgt catggttcaa agttatataa gatacattat cagaaaattt 780 aaatgaaaat ggttggaaaa tttcattcag catacaacaa aggcaggaat tgtctctctt 840 actcgtatgg gtacataaga gagagacgta actcttttgt catatggccg ccatcttctt 900 ttatgatgct cgattccgaa gatgtttatt cggaagtttc cgattgagag gttgggtatg 960 accgctgcaa ggccgcggac tcgaccacaa tctacgtccg tgggaaattg cttccc 1016 // ID CR1-14_NV repbase; DNA; NEM; 4298 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-14_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4298 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4298 RA Kapitonov V.V. and Jurka J.; RT "CR1-14_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 391-391 (2007). XX DR [2] (Consensus) XX SQ Sequence 4298 BP; 1327 A; 765 C; 822 G; 1384 T; 0 other; ttttctttat gtgtcatggc ggatggtcat gaaatttcga gctccaagta aaagtttaca 60 tgggagctct gtgatttaca cagcacttta tatttatcag tgtttattgt taagttaaaa 120 tgggaagaca ttcagataaa aagaagtcag cgtcaaagtc gtgtgaagcc gaaccgacag 180 aatctacttc aacggtcggc gacgaagatg tagtgacaat ggcggctgtg cgtggcctac 240 tcaaagttca agagtcaatg ttgcgtagcc tcttcgagtc aactgtgtcg agcattaacg 300 cccgggttga cgagcttgtc ggcacaattg ctgggataaa agctagcctc gagttttctc 360 aaaaagatat aaacgaacta aagccgttaa gctcaaagct tgagacagca gaagacggta 420 tcggccaggt aaaaaactcc ctggaatatt tcgagaacca gtcccgccga aataatatcc 480 gggtttcagg aatagaggag tccgaaggcg aaacatggta tgacgcagag gtaaaggtaa 540 aagaggccat caaaaccaaa ttgggttttg aaaacgtgga aatagaacga gctcacaggg 600 ttgagagcag aaagaaagcc cgtggcggcg agcagaccaa gccaaggacc atcgtttgca 660 agctccgtga ttggaaacaa cgcgaggccg tgatacggga ggcgaggaaa gtcaagcctg 720 aaggcctgta catagcggaa gacctggcga gggctactct gatgaaacgt gaaggccaaa 780 tccccaagat gaaggaagca aggaaagcgg gcaagttggc atattttgtc ttggatcgct 840 tggttataaa agaaaggaag aacgctgaat ctccagccgg cgaatagtga gctaagtagc 900 agcacttgta gtttcattcc tctttgcgag gttttgcctt tttgtcatct tacagatgat 960 gattttcaac tagcgctcta tgagcaacaa aatggttcaa ttaactttga tccggacaga 1020 ttggcttgcc taaaatttaa cccattactt tctgaaagta ccaatcgatt aagcctaaat 1080 gataatgatc ccgatgctaa tttctatgag tccttcaact gcgagtatta tattgaagac 1140 aaatttaatg atctcgtagc tgactgttac acagataaga acttttctct tctgcactta 1200 acacgcgcag tctgtctggc aattttgatg aggtcaccaa cttaatttca gcgataaaat 1260 tgaatttttc aattatcgga ataagtgaga cgtggttgaa ggactcaaat catttctgcg 1320 atattcctgg ttataattat gtacatgagc atcgcatgga tcggataggg ggtggagtgg 1380 gattatattt aaaacaggac tttgatttca aactccggcc agatttgtgt ttttccagtc 1440 agtctgcaga atctttgttt gttgaaatta tgcgaaaaga cgagaagaat ttaattgtgg 1500 gtgtaattta caggccacct gatctaaacg ctcgcgaatt ttgcgacgaa ttagatcaac 1560 ttcttcaaaa tatttctaga aataacaaaa tttgtgcatt gttaggtgat tataattttg 1620 atgtgatgaa acatcattgt catagaacaa cggcggaatt tctagacata atgtattcta 1680 aaatgttttt tcccttgatt acgcgaccaa caagaattac ttctcatacc gcaactttgc 1740 ttgacaacat ctttataaac gatttgaata gctattgtga tagcgggcta ttgttctctg 1800 acatttctga tcaccttcct gttttttcta ttctttctga caagcttgat tgtagtgcta 1860 aaaatacatg gatcacttac cgtgaaaaat cggcatccaa tatggagagg tttagaacag 1920 agttacagca gtgtatttgg gttaatatat ccctaacaaa tgatccctgt tatgcttatg 1980 ggattttctt agataaattt acatcacttt ataataagtg ttttccagtc aagaaaacta 2040 gaacgaagaa aggcgttaga aaaaagcctt ggttaacaaa aggacttttc aaatcaatta 2100 ggaaaaaaaa tgtgttatat aagcgatatc tctgtatgcc aacgccttcg cgtgagcgtc 2160 attacaagag ttttaggaac aagcttaatc atttattaag aattgcaaaa cgtgattact 2220 atgaaagaaa gctcaatgat tataaatcca atgtgaaata tacctggcga atcttaaatg 2280 aagtaattaa aaatcgcaaa agtaaaacaa attcgttgcc ttccacattc aaggtagctg 2340 attctgaaat cagtgatcca gttaaaattg caaatgattt ttgtgactat tttaccagcc 2400 tgggccctac tctttcagct aaaatccctt cttcgactaa gccattcgct agtttcttac 2460 aaaatgaggt agtgaattct gtattttttg agagcactga tgaccaagaa gttattaaaa 2520 tttgtgaaag cctgcgtcca ggcactgctg ctggatatga caatatccat atggacgtcg 2580 taaaaaatat tattgactta atttcgaagc caatagctaa tattatcaat ttgtccattt 2640 catcgggcgt tgtccctaaa gagctaaaaa tagctcgtgt tatacctctt tttaaatctg 2700 gtgatcaggc tctctatgtt aactataggc ctgtgtcggt cttgccaatt ttctcaaaat 2760 ttctagagaa aattatgtat gatcgtctat ataaattctt aatcaaatat aatttattgt 2820 tcgataatca atatggcttt agaaaacacc actcaaccgc ccttgcactt attcacttat 2880 atgataagct ttcatctgcc atagacaata aggaatttac gatgggcgtg tttattgatc 2940 tttctaaggc gtttgacacg gtcaatcatg aaatattatt aaccaaacta caatattatg 3000 gcgtgcgtgg aacttcattg aaatggtttg agagctatct ctcagaaagg atgcagttcg 3060 ttaactttaa tggccattgt tcctctagga aggtggtcaa gtgtggtgta ccacagagct 3120 ccgttcttgg ccctctactt tttttaatat atattaatga tctttgtacc gtttcgagcg 3180 ccttagatct attactattt gctgatgaca ctagcatatt tttctctcat agttatcttg 3240 ctgctttatc agaaatagtt aataacgagt tggagaaaat ggcagactgg ttttcagcta 3300 acaaattatc tattaatata aaaaagtcga attatatgat atttagacca cggcaaaaaa 3360 ggcaaacact tgaagttgat gtatgtattg gccatcatta tctttcgcag gttgaagaaa 3420 cagtttttct aggtgtcgtt ttagacgaac atttgacgtg gattccacat atttctaatg 3480 ttactaggaa agtctccaaa gcagtgggca tcatgtacaa agcaagtttt tgccttccta 3540 agcgttctct tatgactctc tactattctc taatatatcc gtacttacaa tattgtatct 3600 gtgtttgggg ttcaacatac ccttcaaatc tcaatcgtct ttttttgctc cagaaaagag 3660 ctgtacgcat tatttcaaat aagccatatg atgctcatac tgagccaata tttaaagatc 3720 taaacatttt gaaatttcac tgcatttatt tatttcatat tggtaagcta atgtttcaat 3780 ttaagactaa aatacttcct cgatactttg acaatatatt ttttctcaat tctcaaattc 3840 ataattacaa tacaagacgt gctaagctat ttcacattcc taaatgcaga acaaacatac 3900 gcaaatttgc acttagatat caagggcctg cattttataa ttccctagac actgatactc 3960 agtctgcaac tactttagct tcttttttga ctagccttaa aactgttctt ctcaactagt 4020 atattgaatt ttttcccttt tttgactttt tgtatgtgtg tatgtgttgt tgttttttat 4080 ataaaatcat agttcaggta tattagtatg taatctcctt atttatattt agccatgact 4140 taatattatg tatttttttt cttataaatg gggaggactg tctcgtataa gccttgtggt 4200 ttttatggtc ctcctcgcca tgtattcgtc taattaatta tatatttaat gtacttattg 4260 taaatatgtg gcaaataaaa aaaacttgaa aacttgaa 4298 // ID Penelope-4_NV repbase; DNA; NEM; 3143 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-4_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-4_NV. XX NM Penelope-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3143 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3143 RA Kapitonov V.V. and Jurka J.; RT "Penelope-4_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 634-634 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 26..2899 FT /product="Penelope-4_NV_1p" FT /note="contain the RT and GIY-YIG nuclease FT domains." FT /translation="MEEGFYKLINLKKKRSRYLHHYHFLADCQLLGVVTKG FT LIIKKTANIGHISDGFRDLWDSTLYECSSRLQVLLLQETSKVLDGVTEKIE FT RLESQLDEGHMSYYQNFCLDILPNFEDGLNKKHEQKLDALLSFYRREIVDV FT METTVDHKDIAFDASHEVIAMNSEEQDYMVDGGAEHEAHSMDNIIGTLSGS FT IPETINTNTVTSTVGESTMGLNVVVNLSSRELSRGEVALLSKGLKFCPTPN FT ELDVFALRKDINDFVRRIRLREFFYDPDAVDADFSETPAFRKKSSWCPEKG FT REIAIEAYAKALEEEILSSTKQGKIYSNLTQDERRALKDLRYAKDIVIKEA FT DKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSA FT DGFIDDKTLDYLIINGKPRAGRFYLLPKIHKKGNPGRPVISGCNTCTEKIS FT EFVDYHIKDLVPSIPSHIKDTKHFLNIVRDMGTLPQGAILVTADVVGLYPH FT IPHDEGLEALKAALDKRGKLTGNYIPTEDLVDLARIVLENNNLVFNKKHYL FT QVLGTAIGTRMAPSYANLFMAKVEKEIIDSSPVKPYLWRRYIDDIFMIWTE FT GEDALREFMAHMNSIHRTIKFTFEWSTSQVNFLDVSLTLRDGFISTDLYSK FT PTDKHQYLFHTSCHPSACKKGIPFGQALRIRRICSEDSSFEKRVLELQGYL FT VDRGYDSRFVGREVDRVRRIPRDDTLKDRRKGKNDRVPFVVTFHPALPNLP FT GILRNLQPVLESSSRCRGAIGRVPMVAYRKPRSLKDMLVHSSLKEDSTQVR FT GCGKCGGKRCRVCNFLKTGREFRSTVTNKKYVINFDLDCNSDFVVYLITCS FT MCSKQYVGSTINSFRKRFNNHKSRLNKHPSLPVSERVKDDLIYQHFHCDNH FT LGLNNVMVQLIDKCNSEAQLREREGQWAYRLKSIYPRGLNSDDFFCSRNPR FT RDV" XX SQ Sequence 3143 BP; 903 A; 486 C; 755 G; 999 T; 0 other; ttcgtattga ttttcccgag gactgatgga ggaaggattc tacaagctca tcaacttaaa 60 gaaaaaaaga tcaagatatt tacatcatta ccattttttg gccgattgtc agcttttagg 120 cgtggttacg aaaggactca ttattaagaa gacggcaaat atagggcata tttcggatgg 180 ttttcgggac ttgtgggact cgaccttgta tgagtgttcg tctcgcctac aagttctatt 240 actacaagaa acttcaaaag tcttggatgg tgttacagaa aagattgaga ggctggagtc 300 tcagttggat gagggacata tgagttatta tcagaatttt tgtttagaca ttcttccgaa 360 ttttgaggat ggccttaaca agaaacatga gcagaaattg gatgcgcttc taagttttta 420 tagaagagag atagtagatg ttatggaaac gacagtggat cataaagata tcgcgtttga 480 tgcttcgcat gaggtgattg cgatgaatag tgaggagcaa gactacatgg ttgatggagg 540 agcggagcac gaggctcaca gtatggacaa tattattgga acattatctg ggtctattcc 600 agaaactatt aatactaata cggttactag tacagtgggg gagtctacta tgggtcttaa 660 cgtagttgtt aatttatcta gccgggaact tagccgtggg gaggttgctc ttctttctaa 720 gggtcttaaa ttttgtccta ctcctaatga gttggatgtt tttgctttac gtaaggatat 780 taatgatttc gttaggcgta taaggttaag ggaatttttt tatgatccgg atgccgtaga 840 tgcagatttt tcggaaaccc cagcttttag aaaaaaatca tcttggtgtc cggaaaaagg 900 tcgcgaaatt gctatagagg cgtacgctaa agccttggag gaagagatct tatcttcaac 960 caaacaaggt aagatttata gtaatttgac acaggatgaa cgccgagctc ttaaggattt 1020 aaggtatgct aaggatatag ttataaaaga ggcggataag gggtctgggg tagtggtcat 1080 ggataaggat aagtatattc aagaggcact aagacagctc agtgacaagg aggtatataa 1140 ggaaaccaag gatctcacgc agtatattac ggagctagta aatagaaggg tacgtaagtt 1200 gtctgctgat ggatttatag atgataagac tctagattat cttatcatca atggtaagcc 1260 tagggcaggt cgattttatc tccttcctaa aatacataag aagggtaacc caggtaggcc 1320 agtcatatcg gggtgtaata cttgcactga aaagatatct gagtttgtag attatcatat 1380 taaggatttg gtgccatcta taccatccca tattaaggat actaaacatt ttcttaatat 1440 agtgagggat atgggaactt tacctcaggg ggctatctta gtcacagcag atgtggttgg 1500 gctttacccc cacatacccc atgatgaggg gttggaggct cttaaagccg ctttggacaa 1560 acgtggtaag ttaacaggta attatattcc tactgaggac cttgtggact tagctcgcat 1620 tgtcctggag aataataact tagtatttaa taagaagcat tatttacagg tattaggtac 1680 ggctataggt actagaatgg caccatcata tgctaatctt tttatggcta aagtggaaaa 1740 ggaaatcata gactcttctc cagttaagcc ttatttatgg cgtaggtata tcgatgacat 1800 tttcatgatc tggactgaag gtgaggacgc tctgagagag tttatggctc acatgaactc 1860 tatacataga actataaaat ttacgtttga gtggtctact agtcaggtaa attttttgga 1920 tgtttcactt actcttaggg atgggtttat atctacagat ctgtatagta agcctactga 1980 taagcatcaa tatctttttc atacgtcctg tcatccgtct gcttgtaaga aaggcattcc 2040 ttttgggcag gcactacgta ttcgtaggat atgttcggaa gactcttctt tcgaaaagag 2100 ggtattagag ttacaaggtt atttagttga taggggttat gacagcaggt ttgtggggag 2160 ggaagttgac cgggttagac gtattcctag ggacgacaca ttgaaagaca ggcgtaaagg 2220 taagaatgat cgtgtacctt ttgtagtcac ttttcatcca gctttaccta atttacctgg 2280 tattcttcgt aatttacagc cagttctaga atcttctagt agatgtaggg gtgctattgg 2340 tagggtacct atggtggctt ataggaaacc taggagttta aaggatatgt tggtgcactc 2400 ctctcttaaa gaggatagta ctcaggttag aggttgtggt aagtgtggcg gtaaaaggtg 2460 tagggtgtgt aactttctta agacagggcg ggagtttcgc agtacagtta ctaataagaa 2520 atatgtcatt aattttgact tggactgtaa ctcagatttt gttgtttatc taattacttg 2580 ctctatgtgt agcaagcaat acgtagggtc tactatcaat agttttagga agcgttttaa 2640 taatcataaa agtaggttaa ataagcaccc tagtttaccg gttagtgaaa gagttaagga 2700 tgaccttatc tatcaacatt ttcattgcga caatcattta ggtcttaata atgttatggt 2760 acaacttata gataagtgta actctgaggc tcagcttagg gaaagggaag gccagtgggc 2820 ttatcggctt aagtctatct acccgcgggg tcttaatagt gatgactttt tttgtagtag 2880 gaacccacgt agagatgtgt aaattctttt tatccatagc gcgcgctatt ctagaaaatg 2940 cgcgtttttg tcagttgtaa tgtttttgcg tctcgcgcca ctattctgat gtaaataagc 3000 ttgtaacgat tcaccttctt cagtctgccc tgaagaagtc ttattaaaga cgaaaatttg 3060 gcagagtcga tttccagttt ttggtgtatt gtattcattg ttctggtacg agatcgcgac 3120 agtttgggct tttttattct att 3143 // ID Cre-1_NV repbase; DNA; NEM; 3549 BP. XX AC . XX DT 14-OCT-2009 (Rel. 14.1, Created) DT 14-OCT-2009 (Rel. 14.1, Last updated, Version 1) XX DE Cre-1_NV non-LTR retrotransposon - consensus. XX KW CRE; Non-LTR Retrotransposon; Transposable Element; Cre-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3549 RA Kapitonov V.V. and Jurka J.; RT "First examples of CRE non-LTR retrotransposons in animals."; RL Repbase Reports 9(10), 2159-2159 (2009). XX DR [1] (Consensus) XX CC Cre-1_NV belongs to the CRE clade of non-LTR retrotransposons. CC The nematostella genome contains >10 copies of Cre-1_NV that are CC ~98% identical to the consensus sequence. Usually Cre-1_NV CC elements are inserted into (ATT)n microsatellites. The CC nematostella genome contains several families of Cre non-LTR CC retrotransposons. XX FH Key Location/Qualifiers FT CDS 45..3389 FT /product="Cre-1_NV_1p" FT /note="RT and REL domains." FT /translation="MSRGTKKVKWTDQMNKDLLECKRNALDLVASDNAPRK FT RNGRRKGYIEVMAELWEAKGYAHLAIKNQNLRDQAARLEKFDGHTSARNID FT ENSSNIDTDELLSSGSSQTPTSAEYNQNNENERSQNANLPPTFRLDLHTPT FT PPQASREPIEEESDEMNETISMEVPGSLPDYIPVYSPETIVWGQSSGAPIS FT INSSVIVNAYNEITTWRKNTFLDPYGKIGRDFIDQLTKHLNDWNNRSECQH FT IALKTFFVLLAIGLQKPSKTSKSKDHQECLGKRLALWKNGNIEELIREGRT FT IQRRLVQFHRKKDAPQNTAKVFAKLVMEEQINSALRYLTESDCGGVLSLTD FT DVMRQLQEKHPNAQPAKLGSLLFGPAEDVHESIYSEITGGMIREAALRTKG FT AGGPSNVDAHGFQRILASKSFKKSSSDLCDALALLTRRLCTEYTDPMTIEP FT ILASRLIPLDKGKSEVRPIGVGEVLRRIIGKCVTKVLKQDIVESSGSLQVC FT AGQKSGSEAAVHAVYNLFQHEQTDAVMLVDASNAFNSVNRAAALHNIRVLC FT PTLAPFVINTYRLPARLFVAGGKELVSAEGTTQGDPLAMSMYALSLQPLIS FT RLQAATQVNQCWFADDATGCGSLDDVRQWWDTLQSSGPDLGYFPNAVKCWL FT VTKPEKEESARKIFEGTGINITTEGRKHLGAALGSRPHLEQYVDSKVDEWV FT GQVTKLAEFAVSQPQASYAAYTFGLKHRWTYFLRTLPDIEDLLLPLERAIS FT DTLIPSLTGRTCTQAERDLLALPVRFGGLGITNPADEASLEFTASTKVCGP FT LAEQIKQQTHELPCDDAVQEAQQEARREKNEYLKSRCAEVKSSLPVNMLRA FT VDLATQKGASSWLTVLPLREMSFDLNKREFRDALGLRYDWEIPETPSICVC FT GDTFDADHAMICKRGGFVIQRHNELRDLEAELLSLVCKDVQTEPVLQDITG FT EELNRGANTARDARLDIVARGFWERQRQAFFDVRVCHANAESYRDMNIDQI FT FRQHETEKKRQYATRVLEVEQATFTPLVFGSTGGMASECQQFHSRLAELIA FT EKKGELYSTTVSWIRAKVSFAILRSALLCLRGSRSPRRAHVNIYDNDFEIQ FT KQRANIF" XX SQ Sequence 3549 BP; 1083 A; 760 C; 884 G; 822 T; 0 other; gagccaagca tggtggacgc gtgagctcta gctctcaagc aaaaatgtca agagggacca 60 aaaaggtcaa atggacagac caaatgaaca aggacctcct agaatgtaag cggaatgctt 120 tggatttggt tgcgtcggat aatgctccaa gaaaaaggaa tggaaggaga aaaggataca 180 ttgaggtaat ggccgagtta tgggaagcaa aaggctacgc acatcttgct atcaaaaacc 240 agaacttaag ggatcaagcg gcgaggcttg agaaattcga cggtcatact tctgcaagaa 300 atatcgatga aaacagctct aacattgata ctgacgaact ccttagttct ggtagctctc 360 aaacaccaac aagtgccgaa tataaccaaa acaacgagaa cgaaagaagc caaaacgcta 420 atttaccacc gacttttagg ctggatctgc atacgcctac tccaccacaa gcctccaggg 480 aaccaattga agaagagagt gatgagatga atgagaccat ttctatggag gtgccaggct 540 ctttgccaga ttatataccc gtgtactcgc cggaaactat tgtctggggt caatcgtcag 600 gagcaccaat atcaataaac tcctcagtaa ttgttaatgc gtataacgag atcactacat 660 ggcgaaaaaa cactttctta gatccctacg ggaaaattgg cagagacttt attgatcaac 720 taacaaaaca tctaaacgac tggaacaata ggtcggaatg ccaacacata gcactgaaaa 780 ctttctttgt tctcctggcg ataggtctcc aaaaacctag taaaacatcg aagtctaagg 840 atcaccaaga atgccttgga aaaaggctag ccctttggaa aaacgggaac attgaggagc 900 ttattcgaga gggcaggact atacaaaggc gtcttgtgca gttccaccga aaaaaggatg 960 ctccccagaa cacagcaaaa gtgtttgcga agctcgttat ggaagagcaa ataaactccg 1020 ccttgcgtta tctcactgaa agtgattgcg gaggtgtctt atccttgacg gacgacgtaa 1080 tgaggcagct acaggagaaa catcctaatg cacaacctgc taagttggga tccctgttgt 1140 ttggcccagc agaagatgta cacgagtcaa tctatagtga gatcacaggg ggaatgataa 1200 gagaggcagc attgagaact aagggcgctg gaggaccatc taatgtagac gcgcacggtt 1260 ttcaaagaat cctcgccagc aaatcattca agaaatcaag ctcggacctg tgcgacgcac 1320 tcgccttgct tacccgtcgt ttatgcacag agtacaccga tcctatgact atcgaaccga 1380 tactagcgag tcgccttatc ccactagata aaggcaaaag tgaggtccga ccaataggtg 1440 taggagaagt gttgagaaga atcattggca agtgcgtaac gaaggtgctc aagcaagaca 1500 tagtggagtc gagtggctcg cttcaggtgt gcgccgggca aaaatcgggg agtgaggctg 1560 cggtccatgc agtatataat ctattccaac atgaacagac agatgctgtg atgttagtag 1620 atgcttcaaa cgcctttaac tcggtcaacc gagctgccgc ccttcataat attcgggtcc 1680 tgtgcccaac gctggcccct tttgtaatta acacctaccg cctaccagca cggctgtttg 1740 tagcgggagg caaggagctt gtatcagctg agggcacaac tcaaggtgat ccgctcgcaa 1800 tgagcatgta tgccctcagc ttacaaccac tcatatctcg cctacaagca gcaactcaag 1860 tcaaccaatg ctggttcgca gatgatgcga caggatgtgg gtcactggat gacgtcaggc 1920 agtggtggga tacccttcaa agttcgggac cggatttagg atattttcct aatgctgtga 1980 agtgttggct cgtaactaag cccgagaaag aggaatctgc aaggaaaatc tttgaaggaa 2040 ctggaatcaa tatcactacg gaaggtcgca agcatcttgg agcggcgctc ggttccaggc 2100 cccatcttga acagtacgtg gatagcaaag ttgatgagtg ggtggggcag gtgacaaaac 2160 tcgctgaatt tgcagtttcg caacctcaag cctcctacgc agcgtatacg tttggcttga 2220 agcaccgttg gacgtatttt ctgagaactc tgccggatat agaggatcta ttgttgcctc 2280 tagaacgtgc catatcagac accttgatac cctctctaac agggcgcacg tgtactcagg 2340 cagaacgtga tctcctcgct ttgccagtga ggtttggagg cctgggtata acaaatcccg 2400 ctgatgaggc ttctctcgaa tttacagctt caacgaaggt ctgtggtccg cttgcagaac 2460 agataaaaca gcaaacgcat gagctgccgt gtgacgatgc cgtacaagaa gcacagcaag 2520 aggcgcgcag agagaagaac gagtacctga agtctagatg cgcggaggtg aaaagctctc 2580 tacctgttaa tatgctaaga gcagtggacc ttgctactca gaaaggggct tcaagctggc 2640 ttaccgttct gccattaaga gagatgagct ttgatctcaa caaacgagaa ttcagagacg 2700 ctctaggatt gagatacgac tgggagatcc ccgagacacc atctatctgc gtttgcgggg 2760 acacattcga cgcagatcac gcaatgattt gcaagagagg cgggtttgta atccaacgcc 2820 acaacgagct gagggatttg gaggcggaat tgctgagtct ggtgtgtaaa gatgtgcaaa 2880 cggagcctgt tctacaggac atcacgggag aagagcttaa caggggagct aacaccgctc 2940 gagacgcacg actggacatt gtagcaagag gtttctggga gaggcagagg caggcatttt 3000 ttgatgtacg agtttgccat gctaatgctg aatcctatag agacatgaac attgaccaga 3060 tatttaggca acatgaaaca gaaaagaagc gtcagtacgc tactagagtg ttagaagtag 3120 agcaggccac tttcacacca ttagtgtttg gctcgacagg gggaatggca agcgaatgcc 3180 aacagtttca ctccaggcta gcggagctca ttgccgagaa gaagggagaa ttatactcaa 3240 caaccgtgtc ctggatccgt gcaaaagttt cgttcgccat tttaagatct gcccttctgt 3300 gtctacgtgg ttcaaggagc ccaaggcgag cacatgtaaa tatatatgac aatgactttg 3360 aaattcagaa acagagagca aatatttttt aaatgtattt ttgtagtttt ttttaatcac 3420 gatttttaat agtatagctc aattttgtaa ataatcaaat tctaatgaat caagaaaaat 3480 catttataaa agaaatattt agtaattcta aaattgtaaa ttgagttgtt taagtaagtt 3540 acaataaag 3549 // ID CR1-19_NV repbase; DNA; NEM; 3550 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 30-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone CR1-19_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; NVREP358; KW CR1-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3550 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3550 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 716-716 (2009). XX DR [2] (Consensus) XX CC This family can be still active (S>99%). XX FH Key Location/Qualifiers FT CDS 5..3349 FT /product="CR1-19_NV_1p" FT /note="endonuclease and reverse transcriptase." FT /translation="MADRRTGACSSAFAALFILLAISSKIYAHTITPKCDL FT HGKRPVEGLTNFTWNMFKPLGQFTIRRKPSKGTMITSAFRKHRTFVSIIPG FT LLLLCGDIISQPGPAANAGLRHSSIKCLGINARSIKSTHKVGSAIVCNSER FT VQDLAYSENADIVFINETWLNSSISDEEVFHSGYTIYRRDRNDREGGGVLI FT AAKSDSFKAIKEWKPDMTLFQDLEVVSAELTTSCNRKVLFSSFYWPDPDSD FT PYVWLEKFNNYLDYACDSFDTMLISGDFNMSKISWASEEQSLGARERSFTE FT ILNDHYLSQMNHFPTRGDKILDLVITNASDQVCVNEVLSPNEAGVFSDHGV FT VCFEFSAFVKAPSKFHRSVYNYTKADFDGLRASLSALELTMSSNENSDIDT FT DWQNWKDLFLAAVADHVPSKKLRGRNPVPWMNGTILDLIKKKETTRRRLKK FT TPAKASLREKFKALRAEVKQALRESRENFFQSLERDYKNNTKRFWSVLKQK FT SKSRGLPSQVSMATVNPPTGSQDPTPLRTTADDPEAIANLFNKYFASVFLK FT DSLQDLNTDPEHCAPPVPELSNISFDINDILSVIRGLDASKASGPDNIPVR FT LLKETAAVIAPSLCQIFNKSIKLGKFPSEWKIAHIVPVYKKDSAQQVENYR FT PISLLSVVSKIMERCVFNKIRERVHCLIQRCQHGFIAGRSCVTQLVEVLDT FT IGSHLDNGNQIDVVYLDMSKAFDRVSHRMLTRKLVQYGFGGNLLKWFTSYI FT TNRSQRVAIPGGVSTCQPVTSGVPQGSILGPILFVLFANDLPDSVCSCSVA FT TFADDTKVFNVINSADDTDVLQSDLNSLNGWAASTGMTFNQTKSKVMRVSR FT KRKPVLKTYSLGGLPLACTETEKDLGVWMSDDLSWTKQVDEACSKANRTLG FT FVRRHSRSIKKTNIRRSMYLALVRPHLGYATQLWAPQTKDLIRRVERIQRR FT ASKYMLGLPFRCSQTYKERLIQLKLLPLSYWHEYLDMSYFYKIINGLVNIN FT PSIVPKVRSVRPTRSSTNSSAPQFFARKCKTSAFQKSYLNRCTRIWNTLTN FT LLNSSSYSDHASFKRALLNYYLNALSITYDPEDPRSWKSVCLTCNRARVLT FT HQISCCF" XX SQ Sequence 3550 BP; 1044 A; 791 C; 722 G; 993 T; 0 other; catcatggcg gacagacgca ctggcgcgtg ctcctccgct tttgctgctt tatttatact 60 gttagcaatc tcctcaaaga tctatgctca cacaatcact ccaaaatgtg atctacatgg 120 aaagagacct gttgaaggat taacaaactt cacatggaac atgttcaagc cattaggaca 180 atttacgatc cggcggaaac caagcaaagg aactatgata acatcagcat ttcggaagca 240 cagaaccttt gtcagcatta ttcctggact cctactccta tgtggtgata ttattagtca 300 acctggccca gcagctaatg caggtcttcg acacagctcc atcaaatgcc ttggtattaa 360 tgccaggagt attaaaagca cacataaagt aggatcggcc attgtctgta actcagagcg 420 cgttcaagac ctagcgtatt cagagaacgc cgatattgtc tttattaacg aaacatggct 480 taacagcagt attagtgatg aagaggtatt tcattctggc tacaccatct atagaagaga 540 tcgcaacgat cgagaaggcg ggggtgtgct tattgcagcg aaatcagaca gttttaaggc 600 gataaaggaa tggaaaccgg acatgacttt atttcaagat cttgaagttg tatcagcaga 660 actcactaca agttgcaatc ggaaagtcct gttctcgtcg ttttactggc ctgatccaga 720 ctccgaccct tatgtatggc ttgaaaaatt taataactat cttgattatg cctgtgactc 780 atttgatact atgctaattt ccggagactt caacatgtca aaaatctctt gggcctcaga 840 agaacaatca ttaggtgcca gagagcgttc tttcactgag attcttaatg accactatct 900 atcacaaatg aaccattttc caacacgggg tgataaaata cttgacttgg ttattactaa 960 tgcctccgat caagtatgtg tgaatgaggt attgtctcct aatgaagcag gagtgttttc 1020 cgatcatggt gtggtctgtt ttgagttctc tgcgtttgtt aaagcaccgt ccaaattcca 1080 ccgttcagtc tacaactata caaaagccga ttttgatggc ttgcgcgcct ctctcagtgc 1140 attagaattg acaatgagct ctaacgaaaa cagcgatatt gacacggact ggcaaaattg 1200 gaaagatcta tttttggctg ccgtagcaga tcacgttcca tccaaaaagc ttaggggtcg 1260 caatccagta ccttggatga atggaactat tcttgaccta attaagaaga aagaaacgac 1320 tcgaaggcgt ctaaaaaaga cccctgctaa agcgtctctg agggaaaaat tcaaagcgct 1380 gcgtgcggaa gtcaaacaag cactgcggga aagtcgtgaa aactttttcc agtctctcga 1440 acgggactat aaaaacaaca ccaaacgctt ttggtctgtt ctaaaacaga aatccaaatc 1500 acgtgggctc ccatctcagg tctctatggc aaccgtaaat ccacccactg gttcccagga 1560 ccccacgcca ctaagaacca cagctgatga tccggaagca attgcaaatt tattcaataa 1620 atactttgct tcagtgtttt taaaagattc tcttcaagac ctaaacactg acccggaaca 1680 ttgtgcaccc cctgtacccg agctatctaa tatttcattc gatataaatg atatattatc 1740 ggttatcagg gggctggacg ccagtaaagc ttctggacca gataacatcc ccgtcagatt 1800 actaaaagag accgcggctg tgattgctcc ctctctttgt cagattttca ataagtctat 1860 caagcttggc aaatttcctt ctgaatggaa aattgctcat atcgttcctg tttacaagaa 1920 agactctgct caacaagttg aaaattacag accgatatca ctcttgtctg ttgtgtcgaa 1980 aattatggaa cgttgtgtat ttaataagat aagagagagg gtgcactgcc tcatccagag 2040 gtgtcaacat gggtttattg caggccgctc ttgtgtcacc cagctggtgg aagtccttga 2100 cactattggc tctcacttag acaatgggaa ccaaattgat gttgtatacc ttgatatgtc 2160 aaaggctttc gatagagtaa gccaccgtat gctaacacgg aaactagtcc aatatggttt 2220 tggcggaaat ctgttgaagt ggtttacatc atatatcacc aatcggagcc aacgcgtagc 2280 tattccaggg ggggtctcaa catgtcaacc tgtgacttcc ggcgtcccgc aagggtcaat 2340 tctcggtcct atactgttcg tcctcttcgc aaatgacttg ccagattcag tttgctcatg 2400 cagtgttgcg acatttgcag acgacactaa ggtctttaat gttatcaact cggcggacga 2460 cacggatgtg ttacaatctg acctgaacag tctaaatggc tgggcggcat cgacaggcat 2520 gacatttaat caaacaaaga gcaaagtcat gcgggtttcg cgaaagcgta aaccagttct 2580 caaaacatat tcgcttggcg gtttgccttt agcctgcact gagacggaga aggatctcgg 2640 cgtctggatg tcagacgacc tctcttggac taagcaagtt gacgaggcat gtagtaaggc 2700 caacaggacg ctggggttcg ttagaagaca ctcaagatcc ataaagaaaa ccaacataag 2760 aagatcgatg tatctcgccc tagtacgtcc tcacctagga tacgcaacac aactgtgggc 2820 accgcagaca aaggacctga ttagacgagt tgaaagaatc caaagacgag ctagcaagta 2880 catgttagga ctcccattta gatgcagcca aacatacaaa gaaagactta ttcaacttaa 2940 attattgcca ctatcgtatt ggcacgaata tttggacatg tcatactttt ataaaatcat 3000 aaatgggctt gtcaatatta atccatcaat tgttcccaaa gttcgctcag tccgtcctac 3060 tagatcatct acaaactcaa gcgcaccaca attcttcgct cgcaaatgca aaacttctgc 3120 ttttcaaaaa tcatatttaa accgttgtac aagaatatgg aacactctca ctaatttgtt 3180 aaatagttct agctactctg accatgcttc tttcaagcgc gctttattaa attactactt 3240 aaatgctctt tcgataactt acgatccaga ggatccgcgc tcatggaaat ctgtctgcct 3300 cacctgcaat cgggccaggg tgctaacgca ccaaatttca tgttgtttct aatttagttt 3360 ttgtgacctt gtaactttta cacattttaa actcgggtcc gccgtaattg gcctagctgt 3420 ggcggatacc ctgccctttc gttattgtat gtatttatgt tctgtttctc atgtataacg 3480 tattatgtat gtgtattttt tttttctccg tgggcaaagt caattaaaat taaaattaaa 3540 aataaataaa 3550 // ID DNA-TA-25_NV repbase; DNA; NEM; 281 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-TA-25_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW NVREP378; DNA-TA-25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-281 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-281 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-281 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-25_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 281 BP; 66 A; 66 C; 64 G; 85 T; 0 other; caatgctgga caaaactgtt gtcgcctttt ttgatttttc actgcatagg gggttcaatg 60 ttacccactc ctcctgcgcg cttctccccc ctccccccag tacaatgttg ttcaattcgg 120 gctgtctttc tcagaatttg agcacggtta catccaacat tgaaaggggg gaaggggggt 180 ttcaatgaca ttgtcttggg aagaaagcta gttgactaac gatagatatc gagaaatccg 240 ccttttttta aggacgcgac aactagtttt gtccagcatt g 281 // ID DNA-X-4_NV repbase; DNA; NEM; 950 BP. XX AC . XX DT 23-FEB-2011 (Rel. 16.02, Created) DT 23-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-X-4_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP50; KW DNA-X-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-950 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-950 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-950 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Target site duplications are not clear: their size varies from 3- CC to 8-bp .Copies of this transposon contains minisatellites. XX SQ Sequence 950 BP; 306 A; 147 C; 183 G; 314 T; 0 other; tgttacgccg caaaatgtaa taactaacgc aaaatgtaat cttaacgcga aatgtaataa 60 ctttcaacgc aaaatgtaat aaatgtttaa cgcgaaatgt aataactttt caacgcaaaa 120 tgtaataaaa tatttaacgc gaaatgtaat aacgcaaaat gtaataactt tatctattga 180 ctaatagtta aaagttctac taatattagg aaaaagatga aatgttaaca cgtagagaca 240 aacggaagga tcgtttagtg aaagaaaggc agtgcgactt gaaagtgcat tgttcttgcc 300 ttggcttcca ggggtttttg ttggtatggt gtgacattat tcccgattta gtttgagaag 360 tgacaaagtc cagggtgcat ataaatttgg aacaggccta ttgtagtctt aatacgaagg 420 gaattttgaa aaatatggga aagcaataaa aaaacatgat ataaaatttt accactgagt 480 tataatggtt tggcagtcat attgcgcgtt gtgtctagaa attgcctaat tcaatgatag 540 cgacctcgtc tgcagttggc atttgctctc tctttgcatt tattactact agtatacaat 600 caaaaccgca cagtatcgca gctttataga ccatgattta gggaggattc gccatctcag 660 gttgctgaca gaaccactgc caagtgtttg gagagaccga gaccaaccgt cgattcgaga 720 tggactacta caactgttgg tcactacatg ctagcgtttt gtctattttc ttagttacag 780 cttttagtta tagtttatag gtttatagtc attatttgat gttattacat tttgcgttat 840 tacatttcgc gttaaataat ttattacatt ttgcgttgaa aagttattac atttcgcgtt 900 aagcatttat tacattttgc gttgaagtta ttacatttcg cggcgtaaca 950 // ID DNA-9-10_NV repbase; DNA; NEM; 659 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-10_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-659 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-659 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-659 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 659 BP; 195 A; 154 C; 145 G; 165 T; 0 other; tagtccagac ctgggactct ctttgcgctc gacattctgg ctcgcgtgaa agagggtcca 60 gtatttattg catgcgcatg cgcgaacatg taccaatcag cgatcttcac ggcaaaagtt 120 gaaatacgag cgcgcgcaat aacggacgtg cctaaggagg gtcgattccc gctagacctt 180 gtcgagtgca gagctccgaa aatcgatcat cgctaagttg aaaagaatgt tttgtacatg 240 tgaaggaata tcagcgaact gcttgggatt tgttttctat aaaaacgcga taaaatgtga 300 ttgaaaatca aattccaaaa aagcgcgcgc tcgtttgaaa tgacgctatt gcctaaagcg 360 cgcgcgtgaa aataacgaaa acggaaaagc tctttgattg atatattttc cagactctaa 420 ttatcatctg tcctgttctc agaaaagatt gacaatcaag tatttaccca cgaccaaaat 480 cagcgtatta tttctgaaat aaaccctcgc tcgtcccttt cgcagccatc ttgaactaag 540 caaccaggcc acaccgcata tatgcggtgt attttcgcgc atgcgcatgc aataaatact 600 ggaccctctt tcacgcgagc cagaatgtcg agcgcaaaga gagtcccagg tctggacta 659 // ID Kolobok-N19_NV repbase; DNA; NEM; 940 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP156; Kolobok-N19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-940 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 350-350 (2007). XX DR [1] (Consensus) XX CC Kolobok-N19_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N19_NV transposon CC is characterized by 15-bp TIRs and TTAA target site duplications. CC This family is composed of ~100 elements that are ~8% divergent CC from the consensus sequence. XX SQ Sequence 940 BP; 266 A; 192 C; 187 G; 295 T; 0 other; aggaggagcg tcacgccttc tctagccttc cgaaacggat agcccggatc gatctctgag 60 aagggggaaa agtgccgttg ataaatcttc aaaattctct ctgttttact gcccatccga 120 aagctaaatc caagtttctg ttacgaacaa tgtttttttc ttattagcta gcgttttatt 180 ttcaaggata atcgttttct gattaaaaaa tcagtgagat gaaatttgga gtcgttcgtg 240 aggtttagca agcgagcgga ggtccagcga tcactattgg aagtcaaatc aggcacgaat 300 ttggatcgaa gcgagtactc agtatcttta ttagaagggt aatcgaatat tcaatgctga 360 caagaataat atcattggta agacttttag tgcaaggttt atttattgca tatgtaaaca 420 caacttgacg tatatatatg tcattctctc cgttcgagta ttgctttttc tatctctctc 480 ttatctcctc tttatctcgg atatttttgc tactggtggt ctctgcttat tcctagtcac 540 agtcacagtc atcaccttgg aagaataacc ggcaaagtta gacatatttt gttagtagag 600 ggaagtgtaa tttatttgtt cagccacgca aagctccgaa gcgtaactcc ggaatttaca 660 acgaaataaa catcgaatac gaaccacaac attgccttag agtcttcgat atggcctcca 720 gggacctctc caagcgctga aaacatatag acgcttattt catcaagaaa taagagattt 780 ctcagggggt ttgagtcata acaaacagta cgattaacta gcgcgattct cttgcaatct 840 ttgttacccg atactctcgt ataatggaca tctctgattg gctattttga aaaatagtac 900 acaggcttcc cgtcttgcga gttaccgtga cgctcctcct 940 // ID DIRS-33_NV repbase; DNA; NEM; 2131 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-33_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-33_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2131 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2131 RA Kapitonov V.V. and Jurka J.; RT "DIRS-33_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 429-429 (2007). XX DR [2] (Consensus) XX SQ Sequence 2131 BP; 508 A; 474 C; 479 G; 670 T; 0 other; ataatattgt ccatgggacc gggggttttt cttgcaaaaa ccgacattaa atctgcattt 60 ggaatagtcc ccataaactc ggaggatttt catttattag gcatgaagtg gcacggcaag 120 ttttatttcg atagaacgct acctatgggc ctccgcttgt cttgtaaatt gtttgagact 180 ttctcgacgg catatggata tatagtgaaa agctacaagc atccggtgtt ttgcatatct 240 tagacgattt tttgtttttg gcgcctacca aggccaagtg tcaaaacgat cttgataagt 300 ttctcactct ttgtacggcg ataggggtgc ctatcgctgg ctaaaaaact ttgggccctg 360 tcactgaact ccagtttgcg ggtatcacgc ttgacacggt ccggatggaa gcgcgtttac 420 ccccagataa actggcgcga tgcattgaag gactgaccaa tttccttagt agaaaccgcg 480 tcacattaca ggagttgcaa tcgttaattg gtttattgag tttttgcaat tgattgtgcc 540 agcacgtgtt ttctaagaag gttatatgat ttaactattg gagtgcgtag atcttatcat 600 catatacgtt tgactaaagg ctgcaaagag gatatgctcg tttggttaac ctttttgcga 660 gactttaacg ggcgctcgtt ctttctgtcc tcaagatggc ttacgtctcg cactctaaaa 720 ttacatacgg atgctgccgg gtcgcttggc tttgcggggt ttttttggta aacactggtt 780 ctttggcgaa tggcctgtta gctggagaga ttttaacatt acattttggg aattattccc 840 tattgttctt gctgtcgaga tttgtgggtc tgcgatgcgg aaccgctgcg ttgttttctt 900 ttctgataac caggctgtag tagaaatcct aaataagcaa acctcccgcg agccgaaggt 960 tatggtattg gtccgtcacc tggtcctaac ctgcttgaag cacaatattt tgtttcgctc 1020 aaagcatatt gctggaatcc ttaacacaaa aagtgactat tatcgcgctt acaggtcgag 1080 aagttccgag agattttacc cgtggcggac cttctagcca cggaaatccc ccgtcaattt 1140 ctgccagaga gtctcgtttg agcgctttgt tgacagccgc tttgacaatg gcttctagaa 1200 aaacctatca gcgggcatgg cagaaatatt tggaattttc acgcctgttt tgtaatacat 1260 cttttttatc gctaccgatc agcgtgagta atatagcact ttttgtggca tatttatcag 1320 cgcaacaatt tgctccctct actatctcta cctatatgtc gtgtttaagt taagttcaca 1380 aactcgccaa tgatcctact aaaacattct tagtcaataa gataatttcg gcccacagaa 1440 ggctctgctc tcggcctgat gtgcgtttcc caattacgcg agatgtgctg catcgtttgg 1500 tccaagcgct cggccatacc atttcctcgc ctcattgccg ggtgatgttt cagacaatgt 1560 ttttgaccgc tttttatggt ttctctcgcg tgggtgagct atcggccaag gccccgaatc 1620 gggaatccgc tatactacgt taccaatcgg tcacctttct taaaaatgct aaggatattt 1680 aggctgtcaa gctggtcata accgattaca tacataacac cgagcgtaga ccatttcccg 1740 taattattca aaaaggggat gttccgctct tttgtccggt agattttctg cttaaattct 1800 tccgtttaca agacgatcgg cccggccctc tattttgcaa cgtagatagg tctgccgtac 1860 ggaccgattc atttacgcga gaattgaagc gtgctcttgt tttttgtggt ctggactgtt 1920 ctaggtataa atcccatagc tttagaatcg gagcagccac atgggcagct gaaaaaggta 1980 tgaccgatac acaaattcgg agtcttggtc gctggcgttc cgacgcattt aagatctgta 2040 ttcgccctac gtctatcagt tcgggtctgt ctcactaggc tactattgta aagtgtatgt 2100 cagacaagcg gctgctctcc actatagcct a 2131 // ID hAT6-N6_NV repbase; DNA; NEM; 194 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A family of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW NVREP275; hAT6-N6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-194 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-194 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1199-1199 (2007). XX DR [2] (Consensus) XX CC It is a family of non-autonomous hAT DNA transposons that belong CC to the hAT6 group, characterized by 6-bp target site CC duplications. hAT6-N6_NV contains 15-bp TIRs (1 mismatch) and CC shares common termini with the non-autonomous hAT6-5_NV. XX SQ Sequence 194 BP; 51 A; 46 C; 44 G; 53 T; 0 other; cagggtggta aagggtattt tcgtgaaacg agatttggcc atttttcacc ctacgagaaa 60 cgtgaaatcg tccatttcga cgtccgtgaa acgtgattta acgatttaaa aggccatttt 120 tcggtccgtg aaacgtgaaa aagccatttt gcccggtccg tgaaacgtga tccatacccc 180 cctttaccag cctg 194 // ID DNA-5-4_NV repbase; DNA; NEM; 2874 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-4_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2874 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2874 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2874 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 2874 BP; 941 A; 532 C; 551 G; 850 T; 0 other; cagctcagaa tatttccttt tctggaaaca cttttttgtt ttgacattcg aggcatcaaa 60 acattgaaac aaccaatcac agatcaaatt gtaagatgac gtcataacac tcgctggacc 120 taagtaaaaa aaaacatggc ggccatagag agacgagaat aagagcataa aacagtatct 180 ttctgctttt tggtagggtt ttagacgtat caaaacttga aagacttgta gaaaagcctt 240 tgggcgcaaa gatgtggtaa aaatttatat ttcgaatggc tatgttcggt gggaaagtcc 300 gattcgctat agtcaataga tgacggcgag gatgatggtc atcacgattg aattacagct 360 tggaagcgta attatactgg aattcgaagg cacacttaac ggtggacaag caggcatgga 420 ttcttgaccc tggagttgac tactcagtac tgcaaatggt tttcgttgcg tcctccgaag 480 ctcataatgc atgcataaat acatgcctta cggtgtgttg tgtttagtct caataagtta 540 tatatgcagc ccgtccgagt ttgtcggtcg atcatgaaca ttcagtattc aaattgcctt 600 gtgcaggcgc tgttaaaagc tgaatggggg tctagaattt ttcaaaggtg gttcaattta 660 tgaaaactat tacaatagct ttgtgcttaa aaaggattgg accattggac cacagaacca 720 cacctggatc agccactgca gaaaatgact tgacacatac agtatttcat atttgtttta 780 atgacttaat agtggtataa gcttaaatca tctcatctcc tacacacaaa aagcatgtgg 840 tacacagaat atcaaataaa acaaatagaa gacacagttt gaattttttt ttgcttggct 900 tgtaccaacc agcccatctt ttgtataact cttaaattta aatatttgac aatgtcccta 960 gagcatgaat gggctatgac ttgatagccg aaaggctgaa tgggcttagg atttatatgc 1020 cttgaaggtt agagggataa ttgcccaggg gtgggttgga aggggggggg gcagtattca 1080 gttataaaca ttatggaatg gtccaacaga gctcaaaatg tcatacaccc aaaaaggatg 1140 gaaacttgcc acccccaaaa tacacaagcc tgttggtaaa atgttcaatc ccaaagaaat 1200 gcagtggaca catgttatgt tgtaaatgtt tttacagcat atgtataatg caatatgtct 1260 agaaaacaaa tcattttcat gagcttatca ttcttctcct aaacaatttt actccaacag 1320 aattctaatg atttgaattc tttctggtag aaaattttca gtcagagtaa atgggagaaa 1380 agtggaaaca atttgtccaa tcatacaatt tttacaatca agcaccatac ataaaagtga 1440 tgtgaaataa tcatagatcc cctctcattt caaaagccca ttgcaccttt tgaatgcaca 1500 atatgctgtg tcttatatta tgttttagtg cgaattaaaa aacccagaag tataatactg 1560 tgttagctct ggggatttaa tacatagaaa ctttttaacc aaccttcatc catgctcttg 1620 gtttatactc ggatcatact agaagtagaa aacccttccc tcgctagaaa acatgttatt 1680 actagaaaac ctattttcaa caaggggtcc atggaccagg ggcagggccg tagcagaggc 1740 tggggtgcaa atctccatta acgttgaaag ccatataatc tcataccatt tttccaccaa 1800 gcagcgttct ttaagcattg tctttgtaaa tacgaagggg gtccccccta ttttcttgac 1860 agtgctacag aactgggggg tcagtttgta accatacttt caaaaagtgt aatagtcaat 1920 aacacatagc ttgaacaaat aaaacaaata ttcaaaaaaa agaatagtat aagttttttt 1980 atcactaaga gtggaataca aaggagaaaa ttcaatgatc tctctgtcca tccttatata 2040 tttacttatc ttcatcttct ttgccatggt caatatctga aataaattgt aacaattata 2100 tttagaaaag aggaaggggt ttcttttcaa tttgatttat agagtacagt agcttattat 2160 ttatgatggc cttattgcag aggagccaac tgaaactaca gcctcacaca ctaattttat 2220 tttattttta ctcaatttag ctatttaata ataaactttg gcagcgctgt ataagatttc 2280 tggttttaaa atcagccaga aaaagcaaaa aaaatgatag caataaatac ggctaggcta 2340 gctatcaaac gaagcagtcc acttgacagt gtagggaggg cccttgtttc ctatacttat 2400 gtcggtgatg tgcagagctc aacacgatat tgtttaaaga aaccaaacgt cccagcaact 2460 ggcgtcgcgt cccatataga gacataccga tttcgaaagc tacataaccc cttattctca 2520 gaataatttt ttctaagccc agaaaaatta ttgtagagag atcttggcaa atttctacat 2580 gtgtttgggt tcgaaatcgg tcaaacatgg cgctgcagag ctccaattcc cttcgaataa 2640 atactcacca tcttccatat ttttactcca tcgcttcgaa gccttgcacg agatatcttg 2700 gaaagatgac ctaacacact ggctgctcta aaattgcaaa aatcgacggg aaaaagcttt 2760 taaagcgaaa aatatatctt cccggcggta aaaggcgagg ggcttgaatg atgacgtcat 2820 aatccattta ggccgccata tttgtgtttc cagaaaagga aatattctga gctg 2874 // ID LTR-8_NV repbase; DNA; NEM; 840 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR-8_NV solo LTR of an unknown LTR retrotransposon - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR; nonautonomous; KW 4-bp TSD; NVREP125; LTR-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-840 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-840 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-840 RA Kapitonov V. and Jurka J.; RT "A sufamily of LTR-8_NV solo LTRs from the starlet sea anemone RT genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus. It was reported CC originally as the unclassified NVREP125 transposable element CC [1,2]. XX SQ Sequence 840 BP; 204 A; 142 C; 177 G; 317 T; 0 other; tgtgaccggg tggtattttg ggttatttta gattttgcaa agattttaag taagcgattt 60 ttggattgcg attataattg ttttacgtat tttacggatt gtttctcaaa cgtgattcta 120 attcgatccg tacacgttta ggaatttact ttcaacatgt ttcaaattcc tttagattag 180 tatcaatagc ttgatagtga taattgaatc aagttaagcg tccttttacc atttcccagg 240 aagattagtt tctaaatttg acaggacaat ggacgctgag taatttgaac ggtagtaaat 300 gttagcgtcc ctagaaaaat gcgcgtcccc aagcgagtat aaaagcggct gtttttacag 360 tatctgttag ttttttttag tttagtaccg ttgagcaaag gagacgcatt gcttgcgcgg 420 cgtgatgcgg gagcgagata tgcagttgct cagggaagac agtcagcaga gataagctac 480 aagcttagag cgctgtccgt acgggcctgt catgccagtt gtgttcagtt tgatttaccg 540 gttgtaagta ctttgttttt aaaactagcc tttggtttag gttacctttt ctcgggattt 600 gactatgttt gttatcactt aaaatttatt atttaatttg ttaataaatc cttataagtc 660 catgccttgc atcatgtatt cgttctcacg ttgcctttcg ctcgatcgtt ttcgtttcat 720 tccatttatt tttgcctact ttttggctgg tgtcagaacc tgatagtttt gctttcagta 780 ttgcatttgt ttctacattt ttcgtaaccg cacggtaaat gtcaagttcc gacggttaca 840 // ID TE-19_NV repbase; DNA; NEM; 1317 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-19_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; TE-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1317 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1317 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1317 RA Kapitonov V. and Jurka J.; RT "A family of TE-19_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1317 BP; 369 A; 295 C; 221 G; 432 T; 0 other; ttattacatg attgacacgg tttccattgt tttctgtagg gctttatttc acgtacaaac 60 ctcattaata ggcaagtagc taagagcccg gggagggttt tgatattcag cagggaagag 120 cggggctgat gaattgaatt gaattgctca ttataaatgc aagggatgta tatagataca 180 tcccggggaa gctcgtatac atcccttgca tttataatga gcaattaaat caattcacta 240 cctgcactct tccatgctga atatcaaaac ccaaccatat ggcacttaac tttacaattt 300 tccaaaatct attggaccat aaacatgaca aacttcaaat attattattt cttacatctg 360 caggtctttt taggggttta ttgccacttt cgccctcgct ctttatgact ttatcaacct 420 tacaaacatc ctctctcatt acttcatcaa ccctacaatc gaacaccttt gatactatcg 480 aaacttacga aactatccga tcctgccaca gctctggttc taattcctct cttctgccca 540 ctcttgccag gtacgaacag cccacaccgt gttggttttc gtgttctccg gaatcctgtc 600 gtcctttctc ttctcaactt attcttcact tagaactcgt aatattacgg cttgttgttc 660 caaggatcgt tccgacaaga tcaaaatccg gaagaaacta ttcggcttgc gaaaacgtat 720 tctgtgtcag ttcggacatg tcttcgtcgc tctccatctc agaaaaatac gagcgttatg 780 caaactaaag ggtgcaacaa atctcattca aacgctcctt ttgtaaagga aatcacttgc 840 ttattgcatg attgttattt cctacaaata aagaacacct atagactacc ccctattttg 900 tatataacat tgtgaaatgc cataaactgg ccgcgcaggg aatactcttc tttgtatttg 960 gtacaattaa gataccaagg cctttgtttt caaggatgaa atagttttcg tgactattaa 1020 gcacataccg atgtggttga ttgttaatag ttttcctttt tgattgccgt agaaattgca 1080 gaagaaataa cttttcgata tatatgctaa tgtcgtttga atcctccaca ccactctttg 1140 ttcaatcagg gttcaatttc aaagattaag attctgaaaa acatttttgc gtggaaacct 1200 ttgtcaatct gtaataagtc agttaattac ctcgagcctt cggcaataag cttatacatc 1260 ctgcggcctc gggatgtata tcgcttattg cctcggctct cggtaattaa ctcttac 1317 // ID DNA-9-11_NV repbase; DNA; NEM; 198 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-11_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-198 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-198 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-198 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-11_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 198 BP; 49 A; 44 C; 57 G; 48 T; 0 other; tagcctgcta gccggctctc attcggggtt attcggaaat gttttgtttt cgaatattgg 60 gaattctgtg gcgcgcgcga aggccgaggt gcgctggggc gagggtgcga agaaatttct 120 tcgcgatcca cagaattccc aatattcgaa aacaaaacat ttccgaataa gcccgaatga 180 gagccggcta gcaggcta 198 // ID DNA-8-3_NV repbase; DNA; NEM; 148 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-8-3_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 8-bp TSD; KW NVREP40; DNA-8-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-148 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-148 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-148 RA Kapitonov V. and Jurka J.; RT "A family of DNA-8-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 92-99% identical to the consensus. It was reported CC originally as the unclassified NVREP40 transposable element CC [1,2]. XX SQ Sequence 148 BP; 28 A; 32 C; 31 G; 57 T; 0 other; gagtaagtac gcagctgctt tgtctcctat tatctttgtt ctacaaagga gttcttttgt 60 ctctattctt ctcgttcttt gtgtcgaggt gcggatattg ttcatttgcc caatcaaatt 120 gcagcttgta agagctgcgt actgaccc 148 // ID CR1-12_NV repbase; DNA; NEM; 2716 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-12_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2716 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2716 RA Kapitonov V.V. and Jurka J.; RT "CR1-12_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 389-389 (2007). XX DR [2] (Consensus) XX SQ Sequence 2716 BP; 716 A; 664 C; 602 G; 728 T; 6 other; tgagcttcaa actgttgtta atctcaatag accccaaatc gtctgcatca ctgagtcttg 60 gctgcaccct gacatcccgg atgctgcagt taacctcccc gggttttcgt gcttcaggcg 120 cgatagaaca cacacgtctg gtggtggtgt atgcgtttac gtcgactcta acatctcgtg 180 cacaagactg tctgactacg aatcacagga catcgaatcg atatggattg atgctagacc 240 acgcaggctc cctcgcaaaa tctccaggat attacttgga tctgtatacc actccactag 300 ttgtggygag gttgagaact gtakgctcct agaacatctg cagtctaata ctgagagctt 360 cctacgtaat catccagagg gacttgttct tatctgcggt gatttcaatc ccacaagtac 420 tcggttcagt gwagtcgcta caaagcgtgc tacgggtctc tctcagatcg tcaaagtact 480 gacccgtgat accggcatcc tcgwctggtg ccttaccaac atgcccaact ccttcgctcc 540 tgtgtgccag ctgccaaaga ttggaagatc cgaccactac acgttgctta tagcgcctat 600 tctgaggtct ctcaaaccta gggctaagay aactatttgg aaacgtgacc tccggcccag 660 taagatccgg gactttggct gttggataac gcagcagcgc tggaccgaag tatttgacaa 720 acagctggtc tctgaaaaat tccaggcatt ttcggatgtt wtgtatatgg ctgtcgataa 780 gtatctccct ctcaggaaga tatcgatttg cagtagtgat aaaccgtggg tatccaataa 840 gctcaagtac cttgtttcca aacgccaaaa ggcattacat caatttggaa atgactcacc 900 gcaattcaaa atgtacagaa actctgttca ggaagagtgc aaaaaaagca aagcctctta 960 ctataagacc aaagtcgcca aactcaagaa taccaatgtg aaaaggtggt ggaaagaagt 1020 caagggtcta tctggggaca gcgggtcttc acgtgactgg tctcaacaga tgttgtgtga 1080 cgacattcca acaacctctg acctagctac tagatttaac aattttctcg gtagtttaac 1140 tgcgcacttt gaaccactcc cgcctcaagc acctgggtca ttctaccagg tccctgatga 1200 tctgttgatc gataataggc gtgcgtacca ggccctccgc caggtgaaaa ccaacaagtc 1260 atctggtcct gatccaattc cagctaggat ctggaacacc tttgcaatcg aactcgctcc 1320 tgtggtttgc gatctataca atgcgtcgct cattcaagga tacgtccctg ctccactaaa 1380 gcagtctgag atctcgccca tccccaagtg cccccgccct aaagtagtcg aagatgacct 1440 acggccgatc gccttgacat cacaactcgc caaagtactg gaagggttta cgcttcagcc 1500 actattccat caagtgctac atcaactgga ctggttacag tttgcagtcg ctgggaagtc 1560 tactactgaa gcgctggtct atgtgatgca cataattttc gaggccctcg acaaagggga 1620 ctgctgggtc agactgtttt tttctgactt cagtaaaggc tttgatttag tggaccataa 1680 cgttctaata gcagaaatga gtcacctagg tgtccatgaa tgtatcattc gatgggtgtc 1740 gtcatttgta tccaacagga gtcagtatgt taagataagg gattcacgct cccatgtaat 1800 atcacctaag ggaggaatcc cacagggcac caggctagct ccgttactat ttgcaatatt 1860 ggtgaatagg ttagcgcgcg actggcagta tcgcatcaag tatgtagatg acgctacagt 1920 ttttgaaatt gttccaagaa attctcctag ctaccttccg tttgttgcga atgacataaa 1980 tagctatgcc cttgcacgca atatgcgcct taatgccaag aaatgcaaag aaatggccat 2040 gtgcttcctt acttataatt ctactgagct tgctcctatg ctcataaatg gttgtgttat 2100 tgagcgcgtg gattgctata agttgcttgg tgtccacatc accagtgact tctcgtggaa 2160 tactcactgt gatgctatcg tgaagaaggc caccaagcgt ttgtatgcaa tccgtgcgct 2220 caagaaaagc ggtctatcat caaacgacct tattcaagta tactgtagca caatgagacc 2280 tgtgcttgaa tatgcctcgc ctgtctggtc ggcattgcca gagtacttgg tagagttagt 2340 ggaatcggtc caaaaaaaag tgctgcgcat agtgtttcca aacctctctt accatgaggc 2400 attatcacac gctaaattgg aaacactatg ccagcgtaga gaaacggcat gcatcgctct 2460 cgtggcaaag gccaaacgcg gaggccccct taaacgctta attcctattc ctgtagcaac 2520 gcaccatggg tatggtttac ggtccggtac ggcgtctgtt gtccccatct gcggccgtac 2580 gaataggctc aacaatttct gtacttatcg ttatcaacaa gttatgtaaa tgtaaggatg 2640 tattatatat atactggctg ccctgtaatt cagctttcgc tgcaataggg ttaataaaca 2700 cattatctat ctatct 2716 // ID hAT1-1_NV repbase; DNA; NEM; 2438 BP. XX AC . XX DT 06-APR-2008 (Rel. 13.04, Created) DT 06-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE hAT-type autonomous DNA transposon, hAT1 subgroup - consensus. XX KW hAT; DNA transposon; Transposable Element; hAT1 subgroup; KW NVREP396; hAT1-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2438 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2438 RA Kapitonov V.V. and Jurka J.; RT "A family of hAT elements from starlet sea anemone genome."; RL Repbase Reports 8(4), 380-380 (2008). XX DR [2] (Consensus) XX CC hAT1 subgroup is highly diverged from the other hAT elements in CC starlet sea anemone. XX FH Key Location/Qualifiers FT CDS 161..2155 FT /product="hAT1-1_NV_1p" FT /translation="MSSKAAICIHFRQRSRGGWGICLIGQRLPSRTRSFSS FT VLLVTRSKMASFTSNTGSQPSKAEIARERTLPSISGKNKTRGNCDVKNISI FT HDRIQQYPGEELTIKDGKLFCLACREIVSSKKSILTTHLASKKHGNGKEKL FT KKSKLKDQTIMEAFRAADMTQKDSTLPISERAYRLEVVEEFLKAGIPLGKI FT DKLRSLLEKNGQRLTASAHLGQYISIVLKQEVERIKNELTLPGQTGMTRDV FT SMIFDGSTRQGEAIAVILRFLDENWSIIQRLVKIDICSKSVNADDLAQVLN FT QCLSVDYGVKANSLLAAMRDGASVNQAALDRIAFIFPKLLNVVCFSHTLDN FT VGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWKDLTGQRPRSYSETRWWSKW FT EVYKQMLLQFGDIEGFLIEAEAANIGPQLLPQLQAILSDPERVINLKLELA FT ITIDVGEHFVKATYFLEGDGPLVFSCYEKLHAVAQACQAPHFPNVRAVAAA FT IAEENPAQNVAALEQQAKACVQPAIDWFLRKFNVQLYNTVLAFKAARYMCP FT VSVQWLKPTQHSVEALRIFPFLNDDCIINGLKAELPAYLAATADVVINTEE FT RKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQEHA FT LVDYLQASVMTQYNKR" XX SQ Sequence 2438 BP; 711 A; 522 C; 556 G; 649 T; 0 other; taggctctta ccgaaagtgc tagcactttt tttggcatta tttggcttcg cgagcacttt 60 tttttacatt ttttcccaaa aagcactgct agcatttttt cttattatcg actgattatt 120 tatataattt cgcgttaatc agcacactct gacttcacat atgtcgtcca aagccgcaat 180 ttgcattcat tttcgtcaaa ggagccgagg aggctgggga atatgtttga taggtcagcg 240 gttgccttct agaacccggt ccttctcgtc agtcctcctc gtgactcgtt ccaagatggc 300 gtcattcact agcaatactg gaagtcagcc aagcaaggca gagatagctc gagagcgtac 360 tctgccatca atcagtggaa aaaacaaaac tagggggaac tgtgatgtaa agaacataag 420 catacatgat cggattcagc aatatccagg agaggaacta acaatcaaag acgggaagtt 480 gttttgtctg gcatgccgcg aaatagtgtc ttcgaagaag agtattctaa ctacacactt 540 ggcttcaaag aaacatggaa atggtaaaga gaaactgaag aagtctaagt tgaaggatca 600 gactattatg gaggctttta gagcggcgga catgacgcag aaagacagca ctctaccaat 660 atctgaacgg gcctaccgac tcgaagtggt cgaagagttt ctgaaggctg gcatcccact 720 tgggaaaatc gataagctac gctccctctt agaaaagaat ggccaacgtc tcacagcaag 780 tgctcatctt ggtcagtaca tttcaattgt tctcaagcag gaagtcgaaa ggataaaaaa 840 tgaactgact ttgcctggcc agactggcat gacaagagat gtttcgatga tctttgacgg 900 aagtacacga caaggagaag caattgctgt catcctgcgt ttccttgacg agaattggtc 960 gattattcaa cgtctcgtca aaattgatat atgttccaag tcagtgaatg cggatgatct 1020 tgcacaagtt cttaatcagt gcctatcagt tgattatggt gtcaaggcca attcgttact 1080 cgcagccatg agagatgggg caagtgtgaa ccaggcagcg ttggatagga ttgcatttat 1140 ctttcctaag ctgctcaacg ttgtgtgttt ctcacacacg cttgacaatg ttgggaatca 1200 tcttgtcatt ccaactcttc tagagttcgg tagcgtgtgg cttcgcctgt tccgccatag 1260 ttacaaggca aagctgttgt ggaaagatct gactgggcaa agaccgagat catacagtga 1320 gaccagatgg tggtcaaagt gggaagtcta caaacaaatg ttactgcagt ttggagatat 1380 tgagggattc ttgatagaag cagaagccgc taatattggt ccacagttac tccctcaact 1440 ccaggcaata ctttccgatc ctgagcgagt gatcaacctg aagctcgagc tcgccatcac 1500 catcgatgtt ggggagcact ttgtaaaagc gacctatttc ttggaaggtg atggccctct 1560 cgtgttctcg tgttatgaga aactccatgc tgttgcccaa gcctgccaag cccctcactt 1620 tccaaacgtg cgtgcagtcg cagcagcaat cgctgaagaa aatcctgccc aaaacgtagc 1680 agccctcgaa cagcaggcaa aggcatgtgt tcaaccagcc atagattggt ttctgagaaa 1740 gttcaatgtc caactataca acacagtgtt agcgttcaag gctgcgaggt atatgtgtcc 1800 ggtcagcgtc cagtggctga agccaactca gcactcagta gaggccttgc gaatcttccc 1860 ttttctcaat gatgattgca ttatcaacgg cctaaaagct gaactacctg cttacttagc 1920 tgccactgca gatgtggtaa tcaacacaga agagcgaaag gtaaaatggt ggcacgacca 1980 caaggaacag ctccctcact gggcttctgc agtgaagaaa gtgctgttgg tgcagccatc 2040 ctcggctgca gcagaaaggg tattctctgt tctcaattcc gcattcaacg accaacagga 2100 gcatgcctta gttgactatc tgcaagcaag tgtgatgacc cagtacaaca agcgatgact 2160 aacttctaaa atgggtaatg atgacccaat gacaagcgtg tgttggactt aaatggaaaa 2220 aacattgatc gttaaatttt gatgttaaaa catgtgagcg aaaatctgaa aatgtaatgt 2280 tctatatgat taaaaaaagt ctgaaaaaat gagcattttt tttaatccac aagcattttt 2340 taaaaaaaat agcattattt tagcactttt ttggcaaaaa acaagcactg cttttagcat 2400 ttaatgcttt tttaacgagc actttcggta agagccta 2438 // ID DNA-7-11_NV repbase; DNA; NEM; 1101 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-11_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1101 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1101 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1101 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-11_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1101 BP; 366 A; 214 C; 201 G; 320 T; 0 other; caagagacca tgatgtaaga gaacgaatcc cccgtattag ggtatgttcc aatgatgacg 60 tccgtaaaaa ctatttttag aacaagcagt tatttttaga tacgtctctg attggttagc 120 gctcacgttt cctagcaaca tgagtcttac gcgcgatcac atcttgagca atgtgatccg 180 gcaaaggatg tttcggaaat ctttttgacc gaaaatacct tcctttttta cgaacgctgt 240 aaaaatgatc ttccatagag tacgctggag ccaatcaacc gtttctggga cattgaaatg 300 cataaagtgc gtgattttag gctctgggat caacttcccc agtaaaagtt ttcactgctg 360 attcgcaaat tacttataac acaacaatca atcataaatc tgtgtttaca aaacacaatt 420 ctcttccaat tcccttttaa tgaaaaagat acatccagaa cttaatacca ttatattcac 480 accgatatta caaataaaag atttcaagtc tttataatga agtagatctt attccagtga 540 caagggtttc ttgagtgaca tgatttctga acatttgcgt gaaaaattga agttcattca 600 tctaaaaatg ttataaatca aagaaaaata aaggccttct tgtattaaaa tacataacat 660 agactctgag aatgcctagg tattctatct caccgaattg cagagaaaaa gaacttttta 720 ggagtctgca cgatgcatct tgaatgaact ccaaattcac cgtctccccg acgtcttccc 780 gttcaattat ttatataaca tttagataac tgaacattag ataacttaac agataacagg 840 acaccacccc atgagtagca ttgtgatcat gagccttgaa gagcagctaa aaggataaaa 900 acaggtagcg aacgaagtaa agaagtgcag agggaaaaaa tttggtgtga aattgtacta 960 gctcgtggtg cccataacca aatatggcgc gacgaaccat gtatggatgc tatgattgac 1020 aagctcgcgc aatctaaaaa tagctttctt ggacgttatc atgggccacg gggattcgtt 1080 ctcttatatc atggtctctt g 1101 // ID DNA-X-9_NV repbase; DNA; NEM; 1530 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-X-9_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP259; KW DNA-X-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 158-1482 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 158-1482 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1530 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~90% identical to the consensus. It was reported CC originally as the unclassified NVREP259 transposable element CC [1,2]. Target site duplications are not clear. XX SQ Sequence 1530 BP; 457 A; 289 C; 359 G; 419 T; 6 other; ggctagattg cagaataccc cccactcaaa gattacccct tactgtcaac gcgtcaacgc 60 catttccaat attcagcgaa gagtgtcaac gcgtcaccgt gtcaactcct ccgtttataa 120 cagagcgtca acgcgtcacc gtgtcaactc ctcgtttaat atataacgtc acagatccac 180 tccaaataaa atatataccc tgttctaggg ctcatcacct aacatccctt tagacaaatg 240 catcaatggc tatccttaat ttaccatttg ccaaaaaaaa tgagcatttc agcttaaatt 300 aggggtgtta tcgcaattct tgtaggggag gtttgcctct aagtttgacg acaacaattg 360 caaggaaacc cttattatta cgagattgta aatgctctac aacgcttaat ttwgatccaa 420 tcatcacaca tcttggtcag aagttgcgtt gagacatgtg gtacctattc cactagttgg 480 tgtatgaata tcatatgtaa aaaaacattt taccccattc tcttttattt taattgtttc 540 tgttattggg gctattttcc cagaactaag taatttcctt ttacaacatt tatatttgca 600 acattgattg tactcaaatt gtactcatat cttcgattta caatccctaa aagtgctaaa 660 actgttttga attgtactcg ttcgacaatc cctcaaaatc ccttaaaata ctaagttctt 720 tttagttttg aatcataacg ccgttcgaca atcctaaaaa aataataagt ttctttcaat 780 tgtacttata acttcgttct acaatacctt gagatactaa gctcctttta attgtaatca 840 taactccgtt ctacaatcaa gttgacgtgg ggacgcgttg acaagtcgac gacgaaggca 900 agttgacgtg aggacgtgtt gacaagttga cgaggggacg cgttgacaag ttgacaagag 960 gacgcgttga caagttacga aggacgcgtt gacaagttga cgagaggacg cgttgacaag 1020 ttgacaacag gacgmgttga caagtacgag aggacgcgtt gacaagttga cgagaggacg 1080 cgttgacaag ttgacgagag gacgcgttga catggggacg tgttgacaag ttgacgagag 1140 gatggttgac aagttgatga gaggacgcgt tgacaagttg atgasaggac gtgttgacaa 1200 gttgacaaga tggcaagttg aggtgaggac ctggggacaa attgacgaga gggcgcgttg 1260 amaagttgat gagaggasgt gttgacaatt tgacacgagg acgasttgac aggttcacaa 1320 gaggatgtgt tgacaagttg acaagaggac gtgttgacaa gttgacaaga ggacgcgttg 1380 acaagttgac gatagtacgc attgaaaagt tgacgagagg acgcattgac agaggtacta 1440 gtgacatggg agcatgggga cacgtggacg tggggacgag ttttttagaa aacacatagc 1500 ttggggtggg gggtattctg caattgctcc 1530 // ID DNA-9-14_NV repbase; DNA; NEM; 258 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-14_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-258 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-258 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-258 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-14_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 258 BP; 57 A; 66 C; 78 G; 57 T; 0 other; tagcctgctt gcaggcgttt acccggtgtt tttttcgcta tgtttactcg gtgttttcgc 60 tatgcgccga gtcgtggccg ccatcttgtt ttgttctggc cgcgcgaaag ctggaacgag 120 cgcaaagcgc gggggagggg gagggatcgt cacgttttgt cactcgcgcc aagctagcgc 180 ggccaaaaac aagatggcga ccacgactta gcgcatagcg aaaaaaaaaa caccgggtaa 240 acgcctgcaa gcaggcta 258 // ID DNA-9-38_NV repbase; DNA; NEM; 1058 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-38_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP321; DNA-9-38_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-149 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-149 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1058 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-38_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1058 BP; 286 A; 268 C; 229 G; 274 T; 1 other; tagcctgcgt agcaagcgtt tctgtggagt ttcagcagga atagagagcg agcgaggaat 60 atggccgcgc gaagaatggg gcgagcgcaa aaaaaagggg gagggggagg gggaagaagg 120 aaacgcttgc cagcactcat tgtctttttg gcaaacgcct cctgggatca cccgtcagac 180 catgtcacgc ttgaacggtt tcgcctccaa gtgacaaacc ttgacaagcg tgtataattc 240 aaaacagctg tcaaacttag ttccccccaa aacctccctc cgatctcatt ttgggttcat 300 tgcagggttt gcagattgta gatgggcgaa atgtaaattg tttttctttt aatcaaacta 360 agaattacaa agtttgcaaa tgcgactttc aacatcacat tgggcgtgat ttgggttgtc 420 atgttttgtt tatagaagcc aatttcgaag cgaacacaca catgcagagt ttactaggcg 480 atctcaacat cattctatat gcacgcggct cggaaaccta ccgtaaattt acatagacaa 540 ggaaagagcm aaactgcaag ctgtaaaaaa gttccaatcc aactcaaacg tcacgattcc 600 accttgacgg cgtgaacgac taacacgcgc atgttgtctt cctttgaatt cgcctcaagt 660 tggaatatat ccttgctagg accaatcgac aaaacggcta acgaatttcc tccacccaat 720 agctgtttgt ataacgcacc cctgtctcag tcactaaaac atctttcagt ggatccttgt 780 gcaatgctat tttgagaaat tgtgagtgtg aatctgcgaa atgtcactca gccttagccg 840 cgccgcgcca atcagaagcc tcaaattctg cgatcagaaa atgatcgcag actcttcgct 900 gtgagccaaa aagacaatga gtgctggcaa gcgtttcctt cttccccctc cccctcctcc 960 tctttttttt gcgctcgccc catttttcgc gcggccatat tcctcgctcg ctctctattc 1020 ctgctgaaac tccacagaaa cgcttgctac gcaggcta 1058 // ID BEL-2-LTR_NV repbase; DNA; NEM; 219 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the starlet sea anemone BEL-2-LTR_NV autonomous LTR DE Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-2_NV; KW BEL-2-I_NV; BEL-2-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-219 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-219 RA Kapitonov V.V. and Jurka J.; RT "BEL-2_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 368-368 (2007). XX DR [2] (Consensus) XX CC This is a long terminal repeat of the BEL-2_NV LTR CC retrotransposon. XX SQ Sequence 219 BP; 68 A; 27 C; 53 G; 71 T; 0 other; tgtccggaag tagaaaaccc gcaagattgc gttactttat aatactgtat tacgttacat 60 atttagtttt gttatgtgat catgttgtaa ttcgagatag gtaaaaaagg gggttgtgcc 120 cctagagttg agatgcgagt gtactattac tacggagagt ttgtgatcaa gaaataaagt 180 aaagagaata taagtgagtt tatttggttg tccccgaca 219 // ID TE-28_NV repbase; DNA; NEM; 325 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-28_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP377; TE-28_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-325 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-325 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-325 RA Kapitonov V. and Jurka J.; RT "A family of TE-28_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 325 BP; 90 A; 56 C; 47 G; 131 T; 1 other; tagaaatgaa tttattttcg gtattaatga gattgttgtt gtttcttttg ttctcttttt 60 ggtcacatga ctttagtatg tccttattat acattttttg gcgtcgcgtt attcacttga 120 cgccttccag ctctactaat aactctctct agaatcgatg gtatattttc accaattata 180 ttataatgtt taatcgctta tactgtaatt actcaataaa cttaaccagc tggatggcta 240 tcctcctaca cgttgtctct cttatttyat aatatagaca ataaatattt tctattcggc 300 tgaacgcagt gaaagagaat agaaa 325 // ID hAT-3_NV repbase; DNA; NEM; 4091 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-3_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; 8-bp TSDs; hAT-3N1_NV; KW hAT-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4091 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4091 RA Kapitonov V.V. and Jurka J.; RT "hAT-3_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 589-589 (2007). XX DR [2] (Consensus) XX CC The genome contains only two copies of hAT-3_NV (only 2% CC divergent from each other). The transposase-encoding portion of CC the consensus sequence is corrupted by stop-codons. hAT-3N1_NV is CC a family if non-autonomous transposons derived from hAT-3_NV. XX SQ Sequence 4091 BP; 1198 A; 856 C; 909 G; 1128 T; 0 other; caggggcgta cgcagcctaa agaactgcag tcactggact gcagaaaaaa attgacggtt 60 ttatttgcat aacgaaggga aaaaataaat gtttacgcat tcaattttat cttcgtagtt 120 ttatatatga tgacgagaaa agctttaatt ttcttgatcg tggtagtcca gtgtaaatga 180 atgataaact tccgatcgat gtaactattt ccaatccctg gcaaaagagt acaacgtcat 240 cacgtgtcgc aaccgcatag tccggtccca gcgctcggac accctgtgga tatgactttg 300 gcgggaatct gctggtggcg tgtggcgtga tagatcgaca ttctttacta ttttcgagca 360 acagcctgct gttcgaaatg gctggtacaa gtagaagaat tgataatttc tttttcaaaa 420 ggcaaaggta agaatttaat tataaaactg aagtcttatt ttgtcagcat cttttctcaa 480 actcccgttt tttcgcaagg tcttttattg ctaatggaat cactcctcgt gaattaaccg 540 ggcgcttgat aaactgtcgt tcaatctcta taaactttcc cataaattct cccgaaaggg 600 cccgtcctgg ggagtttcta agttacagcc gttactgagg aatttctttc tgtagatcac 660 aaccgtccct atccgaagaa ttgacagaag acgaagtaga accttcgaaa cgggcgcgag 720 gtaaataagt tatatccatg gatatatatt aaacaattgt cccaggcaag attttgtcaa 780 aggcaaaata atccaccccg gccccctgtt tggattttcc ggacaagcca acaatttgta 840 catcaatttc attgtttata tatattaatt acattttgtt tgcttgaaag ggggagaaaa 900 tgatgcagga tgttctgacg agaggtctgt tgaagctaat aagccgtgtc caggtatttt 960 ttttttagta ataattaaaa tcagaatcag tataagcata aaaaagtata acaaaaatcc 1020 gcttacccca atgaagccaa atctcggacc tcgctatttt ctcattttta aatctttcct 1080 tgataaaggc gatgactatt tgggaaccga tgtcgatgta agccacccac ctgttcaagc 1140 agcagcagag ggtcatcctc ccctactaca ggtgaagaat gtctcatatg gatacaatcg 1200 tttagtattt accaaaacag tggataatgc attttgcgcg atttgattgg ctgagaactg 1260 tttccaaaac agtgaatatc aaatgctatt cactgttttg agccggcgag cgctatttat 1320 atcttgtcgc ggagataaag tttttttgct gaaatttgta aataacatga ttttctatcc 1380 tactcggtag atatcgtatg ctattcacct ccccttcgcg gaatagttgt ataacatttc 1440 atccattttc agtagctgtg acacattagt tttgcgatat gagacgagac gttggttggc 1500 atggttttac aaagattcgg tcacgacctt aactaaaata cttctttttt gtttgatttt 1560 tagttgctag tgccaaggac tctgctatta gaataattga aaaagtaccg tttcctgggt 1620 atgtggatat cgccaacact gatttcagac actctaccga cgatgtcaag atgaagatac 1680 tccgccaaag cccagaatct gctagctggc gcgcatttga gtttccctcc aagcagataa 1740 gtggcaggca aagaaaaatg acatctagca tgcgagaaaa acacagttgg atgaggtatt 1800 ctgttagcaa agatgctgta tattgtgctt tctgtagtat gtttcgaaaa ggaaacagtc 1860 tcttttgtaa tgatgaaggg gtttccgatt gaaaaaacct atccagttat gtaactcgct 1920 acttgacaac tgcacactat gactgtgaag ctgacggatt caatttcatt agttcaatgg 1980 aagagggcgt taacatctta agccatctga acagcgcaga gaaatagtca tatactaaag 2040 gagatcatcg aggttatcat tctctgtggg aagcagaata ttccgttgcg tgggcatact 2100 gaagaagaca gtaatttcaa gatcatattg gagcgcattg cagcgtctga tagaacatta 2160 ggtgaccacc ttgccaacgc ccggaagaat gctacttata taagcccacg tattcagaac 2220 gagttaattg aactctgtgg caagaacatc cggaatacat tggtgaaaga aatcaacaaa 2280 gcccaatgtt tcgccatctt ggccgatgag gcaaccgaca gcgcgaccct ggaacagcta 2340 tctatatctg ttcgatatgt caagaatgcc gataccggta ctggcgtgga ggtaaaagag 2400 gtgttcctag ggtttgagga cgttgaagga caaactacag cagatgtcct agcgaaggca 2460 atacttgagt caatagaagc gtacaacatc aacgcagatg gcctgagagg tcaagggtac 2520 gacggagctt ccaatatggc gggtattagg aatggcgtcc aggccagaat taaagaggta 2580 cacccgaacg ctgagtacgt gcactgtctg gctcacgccc ttaacctgtc aattgtccat 2640 aggtgtgatg attcaataat aaggaacatg atgtcaacag tgcaagaaat tgcttttgcg 2700 ttttcatata gagggctaca ggaatgtcgt gaggagatgg gcaaaagaga aaagctgcta 2760 actctgtgcg agacccgttg ggtgcaagag ctgatgcctt gtcaactttc aagcgctcct 2820 tgatgtgata gttaaggcct tcgatatcct tgagacgcta aatgacaaga aagcgcgatc 2880 cttcgtcaat gcgatgctcc agtcttcatt cattgtggcc cttgtagtct gtgaatatct 2940 gttacagttt accgtaaact tgaccacata cttacagagt gtgaatattg atcttctaca 3000 agcacaccaa caagccaaag tagtagttga tgcactaaag aatgaacgaa atgacgcttc 3060 gtgggacaaa ttgtttcaac aggcgacttc cattgcgact gctcgtgata ccaccatctc 3120 aagacctagg gtaggtggaa gccgacagaa ccaccgaaat aatgtgccat ccgattctgc 3180 caaggaatat tataagagag cactatactt cccatttctg gatcatatcg tggcagaaat 3240 acaagctcgt attcttaagc caagcccttt gttcaagata agcaaattgc ccccctgtaa 3300 tgttagagac tggtcaccgg aagcaatgcc cgcatctgaa ttgctagaag catatgagtc 3360 tgacataccg gaggatgttc ggggaatgca agagacggaa tgcttgcgat ggaaagcgcg 3420 atgggagaga gtggatgagc ctccaacaac tgttgttgag actctccctc attgccgacg 3480 acacgagtat cctaacctgt tacgagcatt cacagtcatc ctaactctgc aaataacgac 3540 ctcaacacca gagaggacgt tcagtgccat gcgacgactg aagtcctatc tcagatcgac 3600 gatgacaaag gatcgtctca gcggattggc cctaatgcac gtccacaagc actccatttc 3660 ccttgatgcc aatgacatag taaacgagtt tgctgcatct ggaaacaggc gactggaatt 3720 attgttttaa atgaatacct cgggaacacg tacaacgcta atcgcgagaa cagcgattaa 3780 aagaaatcgc tcggcatcgt tgccaactcg ttttcagcaa cgtgcaagat cacagttact 3840 tcgcttgtaa tgtctatggg aatcccgcct ggtggatgat atctattaag caagttttgt 3900 agtctggtgc taataaaacg ttactcaaac cgtattacgc tttttgtttg taatattctc 3960 tgatgcattg ccgccaattt ccaaaagcgc gagttgcgag attttcgcgg gatgcgggat 4020 taggagccac gccctcttcc agattctgaa tgctgtgact gcaacttgtt aaaatcctgc 4080 gtccgcccct g 4091 // ID BEL-9_NV-LTR repbase; DNA; NEM; 272 BP. XX AC scaffold_430; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: long terminal DE repeat. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-9_NV_; KW BEL-9_NV-I; BEL-9_NV-LTR. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-272 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-272 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_430; Positions 135276 135005. XX SQ Sequence 272 BP; 81 A; 54 C; 76 G; 61 T; 0 other; tgtagcgtcg atacaccaca ggcggcccaa atgccgccaa aagggtcacg tgttgttgtt 60 gttgagtgtg tgtgaatgag aatggcgaag agtcaccaag gaatgtgtgt cgccaagaat 120 gaaggctcaa gagtctttta atgatacatg cgaacgcgta tcacgaagaa taaaagcggc 180 gaaaggtgcc gagctggatt gcacgtgaac gagttgtcgt actattagaa actcttgcgg 240 acgttgattt agagaactca cacaccacta ca 272 // ID DNA-TTAA-4_NV repbase; DNA; NEM; 1554 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-4_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP152; KW DNA-TTAA-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1151 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1151 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1554 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-4_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~92% identical to the consensus. It was reported CC originally as the unclassified NVREP152 transposable element CC [1,2]. DNA-TTAA-4_NV can belong to either Academ or Sola3 CC superfamilies. As with all "TTAA" target site duplications, the CC real size of the target size duplication is not clear: it can be CC 4-bp (TTAA), 2-bp (TA) or 0-bp (TT|AA). XX SQ Sequence 1554 BP; 459 A; 283 C; 253 G; 559 T; 0 other; agtgcccgta gcatcaaact cttaatttcc gggtttatac caatatatca gtagtttagg 60 acttgaaaac aaaccatacc aagttttatt gccatacgac gggttttcgt ggggttttgc 120 cggcttttaa atgtaaataa tatcgcactc tcgagcgaaa agtgacccca cttttcgaaa 180 gcgccaggcg ttcctcgttg attcaggaat cctgaagggc acattttcta ttattttagg 240 gccttgtttt accctgttac cagagcaata tcattatttt tcttattcaa tatgatcatc 300 tgtataatta taaataaaat atttccgaga taggtgtcaa attgtgtgtg ttttttaatt 360 acggcatttc cccttatttc taaggaaaaa tgtgcttacg aaaaaaattg tcgatagaat 420 ttttttaaac attagttttt gtcagttttt gagttaacaa aagcagggac gcagttctaa 480 ttggattgaa tcattatgag gcctcgaatc aatttcttca agttggggta tcaattatcg 540 tatgatcaaa gaaaagcctg aaaattctaa atcttttaag ttttatatta ccaattctta 600 actgtaatca accgcaaaca ttaatctatc taatttgaaa tttagagttc ctatgctcaa 660 cgctataaaa aatgaccccc ttccaaaaat gagcaatcta ttttgtcctc gtcgaatcaa 720 atacttttat cgctagagga aaaatttgtc gatagaattt ttttatagtt atttgagaaa 780 aagcttattt agaacttaat actgtgtcaa aattgtaaat tcattgaatc attctaaggt 840 ctctaatttt tcaaatgagt tccgtctttt cacgaatttt cgacgcgatg cttcgattac 900 aacaggtacc agataaatac cttatttttt tcgttgaagt ttcccgtttg cctcgatggc 960 ccaacgggta gcgcgcatga atacgaatcc ctcgatccgc ggttcgagtc ttacccgcat 1020 gttttacaat ttttttttgt ttttcttttc ttttttcttt ttccttttcc ttttctagtc 1080 cttttctttc acaacgaagg gttgttcgaa taatttttaa ttgctaacat cccctaaaaa 1140 gcgtttattt atttaaaaaa atgcaaagcg ttattttcac ttcttgaaaa aatagcgaca 1200 acagtttttc catgtattat tttagcggca aaaaacgatg caaaaaggaa tagcgtttta 1260 aacttaacat cccagacctc ttcaaagtga aattagtcat tcaaaagcta ctcgattaga 1320 aaatttcttg cacattttag cttgatgcaa gcacccgctg ttctcactgc gcgcgggctc 1380 gttttatggg gtcaacttgt gaaaaggaag agctgttttt aaacgcttgt atctttgccc 1440 gtggtcaaat ttcgagattt tttctgatat catatgaaaa ctctttacct attcttcatc 1500 tcaggataag taaatattaa aaacaagtta ctggaatttg atgctagggg cact 1554 // ID Kolobok-N18_NV repbase; DNA; NEM; 201 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP337; Kolobok-N18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-201 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 351-351 (2007). XX DR [1] (Consensus) XX CC Kolobok-N18_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N18_NV transposon CC is characterized by 46-bp TIRs and TTAA target site duplications. CC This family is composed of ~200 elements that are >15% divergent CC from the consensus sequence. XX SQ Sequence 201 BP; 45 A; 54 C; 53 G; 49 T; 0 other; agcctacgac acactaggcg attttgtacg ctcgtacgag cgaatttcaa tcgccggctg 60 aaaatcgcca ggtctgtctg ctgccgcggc ggcgaattcg ccgatatcta gacgtctgat 120 tcgtccgata ctggcgatca aattcgctgg cgattgaatt cgctcatacg agcgtacaaa 180 atcgcctagt gtgtcgtagg c 201 // ID DNA-X-1_NV repbase; DNA; NEM; 195 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-X-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-X-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-195 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-195 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-195 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 195 BP; 78 A; 56 C; 42 G; 19 T; 0 other; aggggggcgt aaggggggtg cgaaaaccgc acagaaaaac gcacagaaaa acgccaaaaa 60 ccgcaaaacc gtcaaaataa gtcaataacc gtaaaccgcg cagtctagag aaaccgcaat 120 accgcggaat aaaatacgaa aaaccgcgcc agatttaagg caaaaccgca tcaccgcaaa 180 cccttacgcc cccct 195 // ID TE-29_NV repbase; DNA; NEM; 288 BP. XX AC . XX DT 24-MAR-2011 (Rel. 16.03, Created) DT 24-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-29_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP534; TE-29_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-288 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-288 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-288 RA Kapitonov V. and Jurka J.; RT "A family of TE-29_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 288 BP; 92 A; 46 C; 51 G; 99 T; 0 other; aaatatattt tatcacgttt cggaatgtac acaaatacct cccatgggag tttaagagag 60 tcggtattta aagagtcgta agatatgcaa ggtcattcga agcgtctctt tcacaaattt 120 agatctcgtt gatttaaact tctgtagtta catactttac aattatttct attgtataca 180 tgccaccacg agctatcaat aaagagatgc ccgcccttaa ctggtttgtg ttattaatgt 240 agaatagaga taaaatgttt tatactcggt cagtatgtta gagtataa 288 // ID Harbinger-N10_NV repbase; DNA; NEM; 204 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP126; Harbinger-N10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-204 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 169-169 (2007). XX DR [1] (Consensus) XX CC Harbinger-N10_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N10_NV CC transposon is characterized by 17-bp TIRs and 3-bp target site CC duplications. XX SQ Sequence 204 BP; 52 A; 42 C; 53 G; 57 T; 0 other; gggcgcgttt ttttcctatc attctggaat gggaatggtt ggtagagaat gttcagaatg 60 gcattcgagt cattctgcta caggtagcag aatgggtgga atggccttca ttccattccg 120 gaatgggaac gcgggataaa cgaacgcgcg ctttttctat tctaatcatt ctcattccgg 180 aatcacgagt aaaaaaacgc gccc 204 // ID Gypsy-65-I_NV repbase; DNA; NEM; 1218 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-65_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65-I_NV; KW Gypsy-65-LTR_NV; Gypsy-65_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1218 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1218 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-65_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 562-562 (2007). XX DR [2] (Consensus) XX SQ Sequence 1218 BP; 348 A; 263 C; 308 G; 299 T; 0 other; cccatacttg gacgatgtcg ttgtattcag aaaaacattt gacgaacatt tgatcgatct 60 gaggaaagta caacaaagac ttcgagagca tggaatcaaa cttaaaccaa gtaaatgtaa 120 ggttttccat agagaagtga cgttcctggg tcacattgta tcgggagagg gttatcggat 180 gagagtatca aggaagttac agatttaaag aatccaccac ctaggacagt gggggatgtc 240 cgcaggctaa tgagactgtt aagttattcc cgtagatatg tacataactt tgcaacaatc 300 gcagcgccca tttactacct actaaaagag cctgagggag ctaccaaatc atctgcgttt 360 aagagtcgta aggggcccag gcgagtaagt cgttttcacg acagccagtg tcttggtccg 420 aggatcacca gcgtatagtc gagacactca ttggtatcat cacaacacct cccgtaatgg 480 cttactccga ttaaaaacaa ccatttattc tccacacaga cgcttcggag cggggactgg 540 gggctgtatt ataccaacgc cagaacggaa ccctggggta attggttacg ggtcacgggt 600 tgttgaccca agcagagcgc aataaccacc tgcatcctcg aatttttagc gctcaaatgg 660 gctatcacaa gtttaggaat tatttgtttt acgcccctaa attcaccgtc tatacggacg 720 acatcggtgg gtgtcggagt tagtcgacta caactttgtt attaattacc gacccggaaa 780 ggcaaatgga gacgcagacg ggtatgaagt acatggagga atgtgaccat ttgccaggat 840 gatatcatgg cttctgttga ttttgtgaag tcccaagtac atcgtgatga tattccaatg 900 atctcaatgt taagacgcct ggagaattct cctgacgatg atgtcatggt agaatgagga 960 cattgcggga ctgcagcgtg aggttggttg gtaaggtgat tcatttcatg cttagcaagt 1020 ctgcagcaag tgtcaaggaa cgacagaagg aaaccgcggc aacaaaggcc ccgttacatc 1080 aatggaaaag gttggaacta ggtaaggata acatcctacg tcggcgactc gggctgcgtc 1140 ttcaacttgt cctcccccgg aaacctcacc cgatcgtgtt taaggaatta cccgaggaga 1200 tgggacaact cggtgctg 1218 // ID MuDR-N3_NV repbase; DNA; NEM; 4105 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone MuDR-N3_NV non-autonomous DNA transposon - DE consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW MuDR-N3_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4105 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4105 RA Kapitonov V.V. and Jurka J.; RT "MuDR-N3_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 626-626 (2007). XX DR [2] (Consensus) XX SQ Sequence 4105 BP; 1351 A; 690 C; 695 G; 1362 T; 7 other; accagagtga agttagttcc ttattcgcag ttcctttttc gtctgtttcc ttattcgctc 60 agttccttat tcaaatccgg gggggggggt acttacatga taccttttaa ttcgagttga 120 aacagtattt aggcataaca gtttattcag aacaagtcca acagcatttt cgtcgggtaa 180 atttcgatgc tttaacgtgc tcgctgctaa gcggagctgt gaacatgaga ctctatctgc 240 tacaaaaggt caaattacga aatgcgtgca atcgctttca caaatgaatc tagcaaaaga 300 gaggaaatct acctctcatc taataaatgt atttgtatct tgggctttat ttccaaacgc 360 attaatatat ttagaggaga aatattcacg ctttacttga ctacgtacgc gtgtagaagg 420 aatttgacct tgctaacaaa accacaattt gacagatagt gcttgttgtc aattaacacc 480 ttggctacta cataaggctc tgacaaaaca aatagattag tgcagtgaca cgaataggga 540 actgctcctt attcaagtta gttttcgcga ataaggaaat ggaatctccc aacgtccgat 600 ttcgttttac gactttatcc gaataaggaa tagactatga agagggttgt cagtgtttgc 660 tcatcatttc tcaataaagg aaatgaaatt tcataacgcc cgatttcgct ttaacgactc 720 ctttcgaaag agttctcgaa aaaggaaatg gtatttcata actcccgatc tcgttttaac 780 tacttatccg aataaggaat agactaaaaa gagggtcgtt wgtgttttct aaacatttct 840 cgaataagga aatggtattt cataacgcct gatttcgttt taactactta tccgaataag 900 gaatagacta aagagagggt tctttagtat tttctaaaca tttctcgaat aaggaaatgg 960 tatttcataa cgcctgattt cgttttaact acttatccga ataaggaata gactaaaaag 1020 agggttgttt agtattttct aaacatttct cgaataagga aatggtattt cataacgcct 1080 gatttcgttt taactactta tccgaataag gaatagacta aaaagagggt tctttagtat 1140 tttctaaaca tttctcgaat aaggaaatgg tatttcataa cgcctgattt cgttttacct 1200 acttatccga ataaggaata gactaaaaag agggttcttt agtgttttct aaacatttct 1260 cgaataagga aatggtattt cataacgcct gatttcgttt taactactta tccgaataag 1320 gaatagacta taaagaggat tgttagtgtt ttctcacatt tctytaagga gtaaatgcac 1380 tttatttcac aacgccgkat ttcgtttaat ttgaccttct aacaaaacag aattgactag 1440 aaaggttgtt gttaattaac accttggcta ctacataagg ctctgaaaaa aatagatatg 1500 cataagaata gaagtttatt agttatttcc gaataaggaa atggaatctc ccaacgtccg 1560 atttcgtttt acgactttat ccgaataagg aatagactat raggacatag gacacattat 1620 tcattctaca tcaattgaaa ttttgaatct aggagaaaat ctcttcaatg gtatgcgcgt 1680 ttctgaaata atttacttct attcttataa aggttacgtt taaacatttc gaaatagatc 1740 aaacttttta actggtaatg agataccaat ctcacacagg ctgcatagct gttttaatct 1800 ttattggggg gtatctgagt tcgtttcagc ttatattcat tttcatattt atttatatat 1860 gtatccgtaa tgttttcggg cctacctaac cacgaattaa attaaggcag gccgctaata 1920 tctattaaag gatatactaa aaacaaacat tcataatagt tttatttact tttgagaaag 1980 aaagaacagg acctatcagg ttgctcattt ctatatacag gcatcaaata aaagcataga 2040 attattcctt atcaagttac aaaccataat acatatcctt gttagatatg cagtatcatt 2100 tcaagattgt agaaattaac actcagtttt ttattataac attaaacaga tcatagcaaa 2160 ctctttaaat ttaaaataca ttcctaccaa acaagcgtcg tttaagcgaa atcaggcgtt 2220 atgaaattcc atttccttta ttgagaaatg atgagcaaac actgacaatc cttttagtct 2280 attccttatt ggatagtagt tgttggttag gttccgtgag atttgcaaac cgtataaaat 2340 aacatgttaa gatatattta ttcgtatcta gaatgaataa agttatttga tttaatgatt 2400 gcatgaatca aattatttac attattcaaa ctcacaaatt aacttattca atgcgtatcc 2460 tatcgtgttt tgatcaaatc ctgttgctgt agngttttgt aagtactggt tagctgtatt 2520 tcaagttgat tgttgtgata agatacgtgg ttgaaagata ttaacgaaac tgtacttgtc 2580 ttattaatag atttatccga aacagtagtt aaaacgaaat caggcgttat gaaataccat 2640 ttccttttcg agaaatgttt agaaatacta aagaaccctc tctttagtct attccttatt 2700 cggataagta gtaaaacgaa atcggcgtta tgaaatacca tttccttatt cgagaaatgt 2760 tagaaaaact aaaaaccctc ttttagtcta ttcttattcg gataagtagt taaaacgaaa 2820 tcggggttat gaaataccat ttcctttttc gagaaatgtt tagaaaaact aaagaaccct 2880 ctttttagtc tattccttat tcggataagt agttaaaacg aaatcaggcg ttatgaaata 2940 ccatttcctt attcgagaaa tgtttagaaa atactaaaga accctctctt tagtctattc 3000 ttattcggat aagtaggtaa aacgaaatca ggcgttatga aataccattt ccttattcga 3060 gaaatgttta gaaaatacta aaaaccctct ttttagtcta ttccttattc ggataagtag 3120 ttaaaacgaa atcaggcgtt atgaaatacc atttccttat tcgagaaatg tttagaaaat 3180 actaaagaac cctctcttta gtctattcct tattcggata agtagttaaa acgaaatcag 3240 gcgttatgaa ataccatttc cttwttcgag aaatgtttag aaaacactaa aaaccctctt 3300 tttagtctat tccttattcg gataagtagt taaaacgaga tcgggagtta tgaaatacca 3360 tttccttttt cgagaactct ttagaaagga gtcgttaaag cgaaatcggg cgttatgaaa 3420 tttcatgtcc tttattgaga aatgatgagc aaacactgac aaccctcttc atagtctatt 3480 ccttattcgg ataaagtcgt aaaacgaaat cggacgttgg gagattccat ttccttattc 3540 gcgaaaacta acttgaataa ggagcagttc cctattcgtg tcactgcact aatctatttg 3600 ttttgtcaga gccttatcta gtagccaagg tgttaattga caacaagcac tatctgtcaa 3660 attgtggttt tgttagcaag gtcaaattcc ttckacacgc gtacgtagtc aagtaaagcg 3720 tgaatatttc tcctctaaat atattaatgc gtttggaaat aaagcccaag atacaaatac 3780 atttattaga tgagaggtag atttcctctc ttttgctaga ttcatttgtg aaagcgattg 3840 cacgcatttc gtaatttgac cttttgtagc agatagagtc tcatgttcac agctccgctt 3900 agcagcgagc acgttaaagc atcgaaattt acccgacgaa aatgctgttg gacttgttct 3960 gaataaactg ttatgcctaa atactgtttc aactcgaatt aaaaggtatc atgtaagtac 4020 cccccccgga tttgaataag gaactgagcg aataaggaaa cagacgaaaa aggaactgcg 4080 aataaggaac taacttcact ctggt 4105 // ID hAT5-2_NV repbase; DNA; NEM; 3454 BP. XX AC . XX DT 30-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE Starlet sea anemone hAT5-2_NV autonomous hAT DNA transposon - a DE conceptual consensus sequence. XX KW hAT; DNA transposon; Transposable Element; 5-bp TSDs; hAT5 group; KW hAT5-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3454 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3454 RA Kapitonov V.V. and Jurka J.; RT "hAT5 - a novel group of autonomous hAT DNA transposons RT characterized by 5-bp target site duplications."; RL Repbase Reports 7(12), 1189-1189 (2007). XX DR [2] (Consensus) XX CC hAT5-2_NV is a young family of hAT DNA transposons and it belongs CC to a novel group of hAT transposons, called hAT5, generating 5-bp CC target site duplications upon their insertions into chromosomal CC DNA. The hAT5 transposase is similar to the standard hAT CC transposase (they share conserved catalytic motifs and converge CC with each other after a few rounds of PSI-BLAST); identified hAT5 CC transposase sequences form a distinctive phylogenetic cluster and CC they are also present in different species, e.g. sea urchin. CC hAT5-2_NV is flanked by 13-bp TIRs (3 mismatches) and encodes a CC 781-aa transposase (3 exons). The transposase contains the C2H2 CC motif present in diverse hAT transposase sequences encoded by CC different hAT transposons. XX FH Key Location/Qualifiers FT CDS join(487..1069,1446..3106) FT /product="hAT5-2_NVp" FT /note="incomplete transposase." FT /translation="MGESALKSHAKGAKHINYLRLKNDTSLLDFGFVSAAK FT PSTSNEKQGEVTAKCTTETPAGAEVRKPDTIQSFLTKDDVLRAEILWVLKL FT ITSHQSFNSSKDMSELLPKMFPDSKIARQFKCGERKASYVCIFGLAEHFKM FT ELQESIKGPFVVLFDESLNKKMQAKQMDIHVRFIVEVIVEGTNEVRTRYFG FT STFLGHGTAADLMDHFTKCVLESGLSVKDMIQVSMDGPNVNWKFFNDLKKK FT IFDDYGIILINIGSCGLHIVHNSFKRGISATGWKVESFLSSLYYLFKDAPA FT RKEDYCTITSSTLMPLKFVKHRWLENVPVCQRALDIWDNIVKFVKAADEGK FT ITKPQNKSYEVIRECVKDKCFVAKLHFFKCIANQLQPFLTKYQTEKPMVPF FT LSDELCMLIRALMRRFIKHDVMEQCSDEKLVKLDLTDKKLYINHKRIDIGY FT ASEKLKAAKPSEGEVLQFRMECRACLIDLLTKLQEKCPASYSLVRHLSCLN FT PVNMAKDKESCSIKFKKVLTLVLNSGRISEKDCDSLLQEYNLFLDNIPVFG FT SLHFTSFNSANDRLDTLFHEFMSGDDYKLLFKFVKLVLVLSHGQAAVERGF FT SVNKELEVENMKEQTLVARRVVCDYVKTVDGLANVEISKPLLLSVKQSRKR FT YELYLEQERAKTKSAVEQEKRKSTLEEIEEIKRKKRRLDSDTETLNDTADQ FT LLQKAEDEGNLRHLTQANSFRRTAKDKMDELVQVDISLNEKLKQLKE*" XX SQ Sequence 3454 BP; 1115 A; 612 C; 725 G; 1002 T; 0 other; cagggttcgc acaaaccttg aaaagtcctt gaaaatgcag tgagtccttg aaaactcttc 60 gaatttgaac attttgaatt tagtccttga aaagtcctaa aaattttttt aagattgcct 120 tgaaaatgtg tcaaactcct tgatttttca ttttgtgtca tcttttatcc atattttaag 180 ctagaaaata ttattaaaag aataatttca agaaaataat agtataaata gcgttagggt 240 tatgggtcat ttccaagatg gcggttgggg atcaattatt cgcaatgctt acacccccct 300 ctagcgattt acgaaccttt gctcaccaat gcagcatggc ggcctttcaa caacaatgaa 360 aggtcattgc atttacaatg caaagtggga gcgtgaccct ctttacaaaa aatggattag 420 tcctttcaaa ggaaacaaaa agaaggctct gtgtagaata tgtgatcgct catttgataa 480 tctagcatgg gagagagtgc cttaaaatcg catgcaaaag gtgcaaagca cataaactat 540 cttcggctga aaaacgatac atctctgttg gactttggct ttgtttcggc ggccaaacca 600 agcacaagta atgaaaagca aggcgaagtt actgcaaagt gtaccactga gactccagcc 660 ggtgcagaag ttcgcaaacc cgatacaatc cagagtttct tgacaaaaga tgatgtctta 720 cgagctgaaa tattatgggt tttgaaactc attacaagcc accagtcctt caattcttct 780 aaagatatgt cggagttgtt accgaaaatg ttcccagata gcaaaattgc taggcagttc 840 aagtgtggtg agcgaaaagc atcctatgtt tgtatctttg gtctagctga acactttaag 900 atggagcttc aagagagcat caaggggcca tttgttgtcc tttttgacga aagcttgaac 960 aagaaaatgc aagcaaagca aatggatatc catgtgaggt ttatagtgga ggtgatagtg 1020 gaaggcacta atgaagtacg gaccaggtat tttggcagca catttctagg taagtaaaat 1080 cattttataa ctcatccaag ctgttcaagt atatatcatt ttattataat tataatatca 1140 tttaaattca taattaaggt tcattatcct aacaattata aacaccacat cagtgtattg 1200 ttttgctgtt ttttgttctt tttgcctatc cgattgtttt ttcgttttct tttcaagttt 1260 ttttttttag ttttctgtct atgatgctgc attaatcatt gtgtgcactc tgttggttgt 1320 aatgtgctgc aagatattga agacaaacac atgagtgatt ggacttgtga taggtctctg 1380 actgtgcgtc aagagctttc aaatgaatat acagtgctgt aacttggttc tttgtctatt 1440 taaagggcac ggcactgctg ctgacctaat ggatcatttc actaagtgtg tacttgaaag 1500 tggcctgtct gtcaaggata tgattcaagt cagcatggat ggccccaatg tgaactggaa 1560 gttcttcaat gatttaaaga agaagatctt tgatgattat gggatcatac tcatcaacat 1620 tggttcatgt ggcctgcaca ttgtacataa cagcttcaag aggggaataa gtgcaacagg 1680 ctggaaagtc gagtcattcc tttccagttt gtattattta ttcaaagatg caccagctag 1740 gaaagaagat tactgcacaa taaccagttc gacattgatg cccctcaagt ttgtcaagca 1800 caggtggcta gagaatgtcc ctgtatgcca gagagctttg gacatctggg acaacattgt 1860 caagtttgtc aaagctgctg atgaaggcaa gataacaaag ccacagaata agtcttatga 1920 agtcataaga gaatgtgtta aagataaatg ctttgttgca aaacttcact tcttcaagtg 1980 cattgcaaat cagctacagc catttctcac caagtaccag acagaaaagc ccatggtgcc 2040 tttccttagt gatgagttgt gcatgcttat cagagcactc atgcgacgtt ttattaagca 2100 tgatgtgatg gaacaatgca gtgatgaaaa gcttgttaaa ctagatttaa ctgacaagaa 2160 actctacatc aaccacaaga ggatagatat aggctatgca agtgagaaat tgaaagctgc 2220 aaaaccaagt gaaggtgaag tgctacagtt tagaatggag tgcagagcct gcctcattga 2280 tctgcttaca aagttgcaag aaaagtgccc agcctcatac tcacttgtgc gacatttgtc 2340 ctgcttgaat cctgtgaata tggccaaaga caaggaatcc tgttccatca agttcaagaa 2400 ggtcttgaca ttggttctga attctggaag aatctctgag aaagactgtg acagtctgct 2460 acaggagtac aacttgttcc ttgacaacat cccagtgttt ggctccctac atttcaccag 2520 ctttaactca gctaatgaca ggctagacac cctcttccat gaattcatga gtggcgatga 2580 ctacaagctg ctattcaagt ttgtgaagct agtgttagtc ctatctcatg gccaggctgc 2640 tgtagaaagg ggcttcagtg tgaacaaaga gttggaagtg gagaacatga aggaacaaac 2700 acttgttgcc aggagagtcg tttgtgatta tgtcaagact gtagatggat tggctaatgt 2760 ggaaatcagt aagccattgt tactttctgt caagcagtcc agaaaaaggt atgagctcta 2820 tctagaacaa gaaagggcca agacaaagtc tgctgtagaa caggaaaagc gaaagtccac 2880 cctagaggaa atagaagaga tcaagaggaa gaaacggagg ctggattctg acactgagac 2940 cctgaatgac acagcagacc agctcctgca aaaggcagaa gatgaaggca atttaaggca 3000 cttaactcag gccaactctt tcagaaggac tgccaaagac aaaatggatg aacttgttca 3060 agtggatatt tctctcaatg agaaactgaa acaactgaaa gaataataga ggcgtccaaa 3120 gtaaagtgaa caattaagaa tctactcaat gacatgtttt tgttttcaca ctgataagca 3180 ttgtttgtaa ataggttgaa agtgaagaga tcagtttgaa cattaagaag taaatagtta 3240 cagaaatatg tagtaaaaag tagctgagaa cagtcaatac tactaaacta caaaaaaata 3300 aagatttttg gttgaagtcc aaatattatt tactctttct gtagtataga ttacttttga 3360 tgacgtcata ctgtaaaaaa atagtccttg aaaattcaaa tattatcctt gaaaagtcct 3420 tgaatttttt tctgaaaaac ctgtatgaac catg 3454 // ID hAT-1_NV repbase; DNA; NEM; 3088 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-1_NV autonomous DNA transposon - DE conceptual consensus. XX KW hAT; DNA transposon; Transposable Element; 8-bp TSDs; hAT-1N_NV; KW hAT-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3088 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3088 RA Kapitonov V.V. and Jurka J.; RT "hAT-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 586-586 (2007). XX DR [2] (Consensus) XX CC hAT-1_NV is flanked by 16-bp TIRs (2 mismatches) and encodes a CC ~700-aa transposase. The transposase contains the ZnF_TTF zinc CC finger domain (aa pos. 50-125). hAT-1N_NV is a family of CC non-autonomous transposons derived from hAT-1_NV. XX SQ Sequence 3088 BP; 1008 A; 619 C; 616 G; 845 T; 0 other; taaggttcgg caatatatcg aatttatacc gaaatcgcga tatcaaattt tgcgatatcc 60 atatcgcagt accttgcgat ataaataaat taattaatag gctatacaat gcatcaaatt 120 gccgactttt ggctcttttc tctggtttta cgccactaat ttcaatcaaa tatacctcaa 180 aattgtccac agaacgtcca cacaattccg ccatcataat ctagagttgt tatggcaatt 240 ttacttagtt tggtggcact ttccttgccg aaaattgcat ttaacttctc ctgggctgcc 300 atgttggctg ttggacttga tgtgacttga acagccaatt actgtgaggc ttacaaaatg 360 gtggcctact ctggcctgag ctgacttctg attggttgag agagccagac agatgttgtc 420 tgctaaaaag gaacttctgt ctgctggatt ggctgagaaa atggacgaac ttagagattt 480 tgtaccgaaa aaacaaagca ggtccattgt atgggactat tttgggtttg aaatcaatga 540 cacagctcaa gacaaagtca tgtgcaagaa atgctttgct gtggtggcta cttcaagggg 600 taacacttca aatttgattg ctcacctcag aaaccaccat ccagatctgt atgaagaatt 660 caatacaaag aactctaaga agagccaaaa caaaaggcaa ggtgatattc caaaggcccc 720 atcacagaaa aaacaagtgc agtgtacaat tcaagaaagt atccaagcag tgactccata 780 tgaaaaatca tctctgcgat acaaagctat taccaaggca ataacatggt tcttagccaa 840 ggacatggta cccatttata ctgttgaaaa accaggtttc aaggcactga tcagcacact 900 cgacaaaagg tacattttgc cttcaagcac ttacgtctac aatactgcaa ttccggatct 960 atacagagag tgcaggagat ctgtggagct tcaactgatt caggaggtgg aatattttgc 1020 tattacaact gacttgtggt caagtagaac gacataaccc tatctaagtg taactataca 1080 ctatattaca agaattcgat ctgaaatcca aatgtttgga aaccatatat ttgccggaca 1140 gccacaaagg ggagaacata gcttctggac tatgtgatgt gttaatgacc tggagcctta 1200 aggaagaatt cctggtggcc ctcacaaccg acaatgcaag caacatggta aaggcggcag 1260 aactcaattc ccggtcacgc cttcagtgct ttgggcatcg tctccatctt gctattggta 1320 agattcttga tagaaaatat aaatttaaat gtatactatg caagttaatc aatattcaac 1380 aaagcggaat attgtaaata ctaaatagtc cactgtgttt gtaaatatat gacatatggt 1440 atagtagcag tcagtgtaaa ctcactgtaa gaagaagaat ctgtacatgc aatcatgata 1500 caatagaaaa aaacacagcc agtcaaccac ataattaatt tgacacatta gcaagtaaag 1560 taattttcta attacagaaa attcggttag gaatgacaga agaattgacc gggcgacagg 1620 tcagtgcaag aagattgttt cccacttctc gcatagctgg aaaaaaaagg aagcgctcaa 1680 aacggttcaa caggatctgc atctgaaaca gcgcagcctt atcactgaat gtccaacccg 1740 ctggggctcc agacaagcta tgatcgaaag gatactggag caacaaaatg cagtgtcaaa 1800 agttcttggt actgataaag gaacaaggca cattgtacct acatggcaag acattgaagt 1860 actggaatct ataaatacag aattggcgcc cttgaaggaa ttcaccgatg ctatgtcaag 1920 agagagctac gtgagtgttt cctctgtcaa gccagtactt gaacttctgc gcactgtgac 1980 tctcgcctcc gcaccagagg acaccgaact aaccaaaagc ataaaaaact gaagttttgc 2040 aataccttca agacaagtat gccacacaag atctacttga tatggcatca ttcctggatc 2100 cccgctacaa ggcaacctat gttccagctg atgatcttga tgacttgaag aaaaaagttt 2160 tagcagaact ggatgaactg atggataagg tatgcaatag tagtgcaagg tagtaatgca 2220 tttctgttcg tttcatagaa tcctgataac ataaaaacaa aagaacctga gcattttgaa 2280 ctctgacatg gattgaatcg atttttacac tttgttttgt aggagaaaga aagtcatcct 2340 ggtgttccag cggatgcagg ttcttcagga tcagtagtgg agcctgagga gaaaagagaa 2400 aaactcttgg cagcctccta aaggcaacag tcccaagccc gagtgacatc cagccaaaat 2460 ccagcagtga gatggaaatg tacatgacat taccaacact cgatactgag gaagatcctt 2520 tgtcctggtg gaaaatgaac aaaaacttat ttcctaaatt aagcaaactt gcaaggaaat 2580 atctgtgcat acctgccacc agttagccct cagaaagggt ttttagtgct tcggggaatg 2640 tggttactta cactcgcgct tgtcttaagc cagaaaaagt taacatgctt gtttttctgt 2700 caaaaaatct gtaggatcag tgtagactgg ccctacagat tttttgacag aaaaacaagc 2760 atgtgtggaa ttccacacat gttcttgtta attcaccgtt tcttccttgt tcagtggtta 2820 gtctcttaaa tatgacactg tttgtgtcac aaactttgtg aactgtttct ggaatttgaa 2880 tttaattgca tgaccaggcc taatttgtaa acagaatagg caataaaatt ttttgatgcc 2940 ttcaagtttg attttacttc acatccatta tcagtctctg ggatcccatg atatattatg 3000 aaacgttcaa tatcgcacaa tatcgcaata tcgcaaaatc aaagtgcata tcgcatatcg 3060 cacatttttc caatatcgcc gaacttta 3088 // ID DNA-6-2A_NV repbase; DNA; NEM; 266 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-6-2A_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-6-2A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-266 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-266 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-266 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-2A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 266 BP; 47 A; 63 C; 57 G; 99 T; 0 other; tcgccccatg acaggttctc caatagggtt ctggattccg gatcctagtg tgtggattcc 60 ggattccatg tgggtttttt ctcgtggatt ccggattcca gcagcatgga ttccggattc 120 catatctcat tttttcatgg attccggatt ccatatctca ttttttcatg gattccggat 180 tccatatctc attttttcat ggattccgga tcccatatct cattttttca tggattccgg 240 attccggatt acctgtcatg gggcga 266 // ID Rex1-24_NV repbase; DNA; NEM; 2082 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Rex1-24_NV non-LTR retrotransposon - incomplete consensus. XX KW Rex1; Non-LTR Retrotransposon; Transposable Element; NVREP421; KW Rex1-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1430-2082 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1430-2082 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1430-2082 RA Kapitonov V. and Jurka J.; RT "A family of Rex1-24_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus, which represents a CC 5'-truncated active retrotransposon. Its ~600-bp 3'-terminus was CC reported originally as the unclassified NVREP421 transposable CC element [1,2]. XX FH Key Location/Qualifiers FT CDS 3..1892 FT /product="Rex1-24_NV_1p" FT /note="inclomplete ORF2; contains the RT domain." FT /translation="EVVHVGLDTIMPAKPVRSCSTDVPWMTDKLKTLIMKR FT QNAFNIYGADSVQFKYFRNIVNRERKGCRVKYYESRMQHLKGEKPQTWWSE FT VKRLCGLKTTNSDLASQINIEGISNMPPSEQANVINSTLLEPLEEYKLPIP FT LERVSLEFDSPLFLTVSEQRVQKALERLNPRKACGPDRIPNWLLKEYSDLV FT SYPITDILNTSYAEQRLPSIWKMADVTPLPKKKPVVDLQKDLRPISLTPVV FT SKVAEGFVVDDFVKPAVMKILDDSQYGAIPQSSTTMALVNMLHHWSTSTDG FT NGAAVRTLLLDYRKAFDLIDHSILVRKLRSQCNLPASIVNWIIDFLSNRSQ FT RTKFASDCYSEWGPVPAGVPQGTKLGPWLFVLMINDLDISALQWKYVDDTT FT VSEVIAKGSDSHVQELVDKVVEWSCDNRVQLNADKCKELRISFARQERDFT FT PISIEGKEIEVVTSVKLLGLTLTNNLTWNDHVTEVTKKASKRLYFLTQLKR FT AGVPQHELVLFYTSCVRSLMDYAAPVFYNSLPQYLKNEFVHLEKRAVSIIT FT SGRCKLAKDIDINPIFDHHNLLCSKLFNDTINNPNHKLSTLLPPVNDHSRY FT ALRHQRRFNVPRLRTKRASNTFIFSMIKQLRL" XX SQ Sequence 2082 BP; 633 A; 438 C; 430 G; 581 T; 0 other; aagaagtcgt acacgtagga ctagacacca tcatgcctgc aaaacctgtc cggtcttgct 60 cgaccgatgt cccatggatg actgataaat tgaaaaccct tatcatgaaa agacaaaatg 120 cgttcaacat ctatggagct gactcggtcc agttcaaata cttcaggaac attgttaacc 180 gagaaaggaa gggctgtcgg gtgaagtact atgagtcaag aatgcagcac ctaaaaggtg 240 aaaaacccca aacgtggtgg agtgaagtaa aacgcttgtg tggtctgaag actaccaaca 300 gcgatctggc tagccagatc aacatcgaag gaatatcgaa catgcctccc agtgaacaag 360 caaatgtcat caattcaacc ctgctcgagc cattggaaga gtacaagtta cccattcctc 420 ttgagcgcgt gtcactggag ttcgactctc ccctgtttct gacagtgtct gagcaacgtg 480 tgcagaaggc gttagaaaga ctgaacccaa gaaaggcctg cggtccggat agaataccca 540 actggctgct taaggaatac tctgatcttg tgtcgtatcc catcaccgat atcctgaaca 600 cctcttatgc agagcagcgc cttccctcca tttggaagat ggccgacgta actcctctac 660 ccaaaaagaa accagtagtt gacctccaga aagacctaag gccaatatca ctgacgcctg 720 tagtttctaa agtggctgag ggtttcgtcg tagatgattt tgtgaagcct gcagtaatga 780 aaattcttga tgatagtcag tatggtgcta tcccacaatc atcaactacg atggcgctgg 840 tcaacatgtt acatcactgg tcgacaagta ctgatgggaa tggagccgct gtgagaactc 900 tattattgga ctatcgtaaa gcctttgatc ttatagatca tagtatactt gttagaaagt 960 tacgtagcca gtgcaatctt ccagctagta ttgttaactg gataatagat ttcctatcta 1020 acagatctca gcgcactaaa tttgcatcag attgttactc tgagtggggc ccagtccccg 1080 ccggcgttcc tcagggtacg aaattaggcc cttggctttt cgtattaatg atcaatgacc 1140 tagatataag cgcgcttcag tggaaatatg tggacgacac cacggtgtca gaggtaattg 1200 cgaaaggcag tgacagtcac gtgcaggagc tagttgataa agtggtagaa tggtcttgtg 1260 ataatagagt ccagctaaac gcagacaagt gtaaagaact ccgaatttct ttcgccagac 1320 aggagagaga tttcactccg ataagtatag aaggtaaaga gatagaggtg gtcaccagtg 1380 taaaactgct gggtcttacg ttaacgaaca acttaacttg gaacgaccat gttactgagg 1440 tcacgaaaaa ggctagtaaa aggctctatt ttctaacaca actaaaaaga gctggagttc 1500 cccaacatga gctagtatta ttttacacgt catgcgttag atcccttatg gactacgccg 1560 cgccagtatt ttataatagc cttcctcaat acttgaaaaa tgagtttgtg caccttgaaa 1620 aaagggcggt atcaataata acatcaggaa ggtgtaaatt agcgaaggat attgacatca 1680 atccgatctt tgaccatcat aatttactgt gcagcaagct ttttaatgac actattaata 1740 atcctaacca caagttaagt actcttctgc cgcctgtaaa tgatcactcc cgatatgctc 1800 tgcgacacca gcgccgtttt aatgttccaa gacttcgcac aaaaagggct agtaatactt 1860 tcatattctc catgatcaaa caacttaggc tgtagttata tacattttta tcatatattt 1920 ttataggaag taattatatt ttatcataat aatatttata actattgtcg tatttaaatt 1980 tttcatatta tttttatttt ttttgtacat aatgcgtaat tcagcctttt ggctgcaatg 2040 catattttta ataaactatc tatctatcta tctatctatc ta 2082 // ID TE-4_NV repbase; DNA; NEM; 540 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE TE-4_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP201; TE-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-540 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-540 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-540 RA Kapitonov V. and Jurka J.; RT "A family of TE-4_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (24-FEB-2011). XX DR [3] (Consensus) XX CC Target site duplications are not clear. Originally, this family CC was reported as the NVREP201 unclassified DNA transposon [1,2]. CC The 189-bp 3' terminus forms a palindrome. XX SQ Sequence 540 BP; 155 A; 111 C; 102 G; 169 T; 3 other; ttctacaaca cttgcgcgta atctcgcttt ctgattggtt gttagctatg gtaaatcaga 60 ggacatacca crggattcgt cattcacaca atccttgcag gttcacttga agcgaaagag 120 acaaaaaacc ttgattcaaa ttcgagaaat ttggttctca atcttttcta gtaaatgtat 180 tttccatcct tacaaaagga cactaaaagt aacgaagact gcagggtttt gaagctaagt 240 tttcaatttt cgtttatctg cgcgcgctgc aaacaccaaa catgccattt caaacgagcg 300 cgcgctgttt tgattttgta aaatactgtt ttcgttgttt gtgttgtaga aaacaaattt 360 cccatagttt tccgtggtat gtactcttat acaccacgat attcgtcacc tcatgatcaa 420 aatttactgc ggartcactm ggcgctacgc gcctcgtgac tccacaacat tttgatcatg 480 aggtgacgaa tatcgtggtg tataagagta cataccacgg aaaactatgg gaaatttgtt 540 // ID Harbinger-N6_NV repbase; DNA; NEM; 877 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP10; Harbinger-N6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-877 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 165-165 (2007). XX DR [1] (Consensus) XX CC Harbinger-N6_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N6_NV CC transposon is characterized by 30-bp TIRs and 3-bp target site CC duplications. XX SQ Sequence 877 BP; 296 A; 191 C; 191 G; 199 T; 0 other; gggaaagttc atttattatc ccgagggggg ggcgtgagga ttttgataaa agtaagggat 60 aaaattagtt gaccccccct tcaggaggaa caaaattttc catgcccccc ccttacgctt 120 cccccatatt ttcggtgccc ccccccctcc cgaaaaccga agaaagaagg agcaaaggaa 180 ggaacggcaa tgacaatgtc aaaggaacgc gagcaagaga ttagctgcaa gctggacaga 240 aagtggaggg gaaggaattg gctgaaaaca ttaattcaga aaaagtgaag gcactcaatt 300 tctcaaagat gcgactaact ccaggttgca acctgataat ggttgatgct atagatgacg 360 taaaagaagc aaaaaggctt ttcgatcttc tccttgcaag aaaagcgcag catgagaaaa 420 gagaaaagaa agagagcgag gaagacagcg aatcagatat gagcgaggat tttgatgatg 480 gagaatgagc gcttatagca ttaaaacgtt ttgtttatat tttagatatg gaacataagc 540 actttataat attatatagc ggaaaccata aaaagatgta tttagggtgt atacaggttt 600 gcattgcata gataaaatgt ggcttaatac gtatcctgga ctcctggatt gtgcatgcca 660 aataactgcc cccaaaccga gacaagttaa accaagaagt ctgatttgac acttcgtcaa 720 attatatagt agagacaaca cccaaaggaa tcagtgaccc ccccttttaa aatccaaaca 780 ctttcgacgc ccccccttta gacctcagaa atttctcgag gcccccccac agtatcctca 840 cgcccccccc ccctcgggat aataaatgaa ctttccc 877 // ID DNA-9-5_NV repbase; DNA; NEM; 371 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-5_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-371 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-371 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-371 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 371 BP; 119 A; 70 C; 69 G; 113 T; 0 other; gacatgacgg aaaaacctgg aaaacgcgca attccagata gagagagaag acacaatttc 60 ttacaatggc tataggttcc ttgtattacg gactgatttt caaaacacaa ataacgtgag 120 gccgaagtgc acataaccag attttggctt tttaagataa tttttccttg atcatcattg 180 ccctgtgtat cagttcaggg acgaaaagct caaatttcaa tgacacttta caaaaagtcg 240 catcaattta aaaaaagtcg cacttgatat tttgtttgct ataagttact aagtactcag 300 agaaattctc cgccttattc gatgtgaaat gggcttattt gaagcgtcac gtcatgtttt 360 tccgtcatgt c 371 // ID Chapaev-1N1_NV repbase; DNA; NEM; 2584 BP. XX AC . XX DT 01-APR-2011 (Rel. 16.04, Created) DT 01-APR-2011 (Rel. 16.04, Last updated, Version 1) XX DE Chapaev-1N1_NV non-autonomous DNA transposon - consensus. XX KW Chapaev; DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; 4-bp TSD; Chapaev-1_NV; Chapaev-1N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1672 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1672 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2584 RA Kapitonov V. and Jurka J.; RT "A family of Chapaev-1N1_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (1-APR-2011). XX DR [3] (Consensus) XX CC Copies are ~98% identical to the consensus. They are flanked by CC 4-bp target-site duplications. This transposon differs from its CC autonomous counterpart, Chapaev-1_NV, by an internal deletion in CC the autonomous transposon (pos. 1571-4001). XX SQ Sequence 2584 BP; 749 A; 599 C; 568 G; 668 T; 0 other; cacgccactt tcaaacagcc ctagacgcga catttagttg gtaaccgcgc tttttgaatt 60 tgcgaccgcg ctttgaggta gttagttatt aactgacctg acaggatcgc gagtcacgaa 120 ggccgcagcc aagctaccga ataaaaccct tgttttaaaa gaagtgttga tagatatacg 180 tatcctattg cgacatttgg atacctaaaa tgcttacgtg attaaatttt acaaagaaac 240 gatcaaacac gcaattgagc aagaatgtat agcgtcactg taaacggtcc tattgagtga 300 tggcggaagc gcggcgaact acctacatga cttccgatta aaattttagt ctcgtggaag 360 ttttcctggt ttattgcgta gctaatccat aacgtatata taattgtctc ttagaatctg 420 tgttcatagt tttgggagat tgcgaatttt cgaagtagta gctcgtttta atatcgccca 480 tgagcgcaaa gaaatggcta ccgcgaaggc tgaagcaaaa cactttgaga ttttaaaagg 540 tctctgtcgt gtttgcggaa aacggttgaa gaaggcaaaa agcctctatg cccaaagctt 600 tgcctgcggc agtttcaaaa cattgctcga gggcaaattt ggcatcaatg tcgagaagga 660 tgacccctat attcatccga tgcgcttttg taagttgtgt cgtctcgcaa caactgacaa 720 ggctcccata atctgggaga ttcaccggga agaggactgc ccaacgtgcg ccttagaaga 780 gcaaattcaa aaaggcggta ggccgaaaaa agcaaagcga ggcggtgcga gagggcaggc 840 taaaaactcc gcttgggaag agacgacaaa cgcgggttta aaagcacaac taatcgcgcg 900 cgtcaccgag cttagtgcct ctatgaacac actaagggac caccgattca ccgagcgctt 960 tgactttttc gaaacgaaaa aagaagagtt tcattgcgct atttgcctag acgtcctcga 1020 aaagcctctg tcatcaaagt gccagcacag ttgctgctcg gactgctgga aatctgcgtt 1080 cgagttgggg gaaaaacatc cagcatgccc aatatgtcaa gagacgctgg cggaccctaa 1140 tgacctccag cgcgcaccgc ttgttttaat ccagctttta gaggggtacc tggttaaatg 1200 tagggcatgt ggtacccgat tgccttatca cctgtgcaac agccatccct gtcccccgag 1260 aaagcgccag cgtgcgaata gccccgtccc tgccgctgct gttgtgctag atcctcagac 1320 ccgaaccctc gagcagatgt taaacgaggt ccgcactggc ctcgtttccc ctgatgttgc 1380 gcgacttggg aatttgattg tgaacacaat ctgcaagaat tcggaggatg ggataacagc 1440 ccgattgcct ggatctggaa aggtattttg ttctaactat attttttatt cttttttgca 1500 atattataaa ttacattatt attctctttc agccaaccgt ggtcatgaaa atacctcagg 1560 cacagacttc agatttcatc cgggaacgga agtttccttc aggctttttc ggcgagcagg 1620 gtggtgaatc aattcatcat gaactcaacc agttgaaccg tgaattcagc tcgatccacc 1680 ctgcgtcgcg tcggctacga aaaataatag aagagcatag cattagagtt gcacctctaa 1740 accgctcaaa atatccagag aaaaaaaatc gaaaacgaag agctcacacc gctacaacct 1800 gattaagccg agtcagtctc gtttcttaat aatccgagtc gtgtatcaat tgtaaaacta 1860 ttgcaaagcc aggaggacgc gggagcgaca agtattactc cttcgatgtt caaatcagta 1920 ttaatattct atcgaaaata aacttaaacc aactaaaaaa aagaactcaa tcttggtttt 1980 acttcaaatt tatctcaagt caccttgaaa ctagatttat ttttcatatt ttgaatttga 2040 atacgaatca acattccctt tgtgctccct tggtgtttta ttaatggcgg cggaccgaag 2100 aatttagccc ttatccgctt tgacgtagca ctttataatc gcaatctccc aaaacactca 2160 ccgtgccagg cgttcataca gccatccaac tcgtagaatt aggcaccctc taccacggga 2220 aaacttccaa aaatccacaa atcgaactag agtacaagta gtacaacgat atctttaact 2280 tctgcacgag ttaggctccc aaaaatcaaa ctcgcgtagc gcgaatttgt aaaggaattg 2340 aagccatcct tcgctctgtg tcggttccgc catcttgtct gcttggactc tgataaaata 2400 agcactctaa acctcaaaga acacgggatt tcattggttt aaaaacaaag gacgcgatcg 2460 gcttagctgt aagacaaaga cgacgcgagc gttgctaact gatcgttgct atgcaatggg 2520 caactccgca ggacactgtg atcgcaggcg tttttaacta aatgtcgcgc tcgacggcgg 2580 cgtg 2584 // ID DNA-9-15_NV repbase; DNA; NEM; 1272 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-15_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1272 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1272 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1272 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-15_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1272 BP; 375 A; 317 C; 272 G; 307 T; 1 other; tagcctgcgt gcagccggaa atagttccat tattaccgtc tgcgaattac ctacagaaag 60 cttgtttaga ccccccgcgc acctaccgcc ggagtgaagc gatttctgat tggctgtcat 120 ctggttcaaa tgtaacgagc cacgcgattg gtcaatagct ccatgtaccc tgcawatata 180 atttttcgaa tgttatgatt tcgcacgtga gtttgacagc gaagggcgaa gcgtgcaaac 240 caatatatgg caattccttc gtgtaatttg tgcctcacgg atgtagctaa tagcgaccaa 300 agatttgtca tcgggggtaa agggaagttc aatatagctt ttgagctgaa aagtctctct 360 tccacaagag taagcgagta tatttgccgt ctgcgcttta ggaaacttaa gcgacgaaga 420 caattgcttc aagaactgaa aaccatcgaa gacctctttc aaaataaata tagggataat 480 cagaacaccg agcaagaaac ttataagaca ccaacaaaat cacagggaaa gtcatcatcc 540 tcaagaccag aagaactcgc ttctactcct gtgcgcaatg gtccagcgac acaaccgaaa 600 tggccagtca gccctgtaaa tccagctccc gctgcaactc cagctcctgt tgcaactaca 660 gctctgctac aaatgcagct accgctgctg caaatcctcc gaatcctcca aacccacatg 720 tggctgtaac tgttcgagtt aaatggccct cgttggacaa agagagaaaa cttccagagg 780 acctcgaatc attaggcaag atgctcgtcc gcggaacgta tacacaaatc gctacgccca 840 gacggcaaat atactcgctt attcaatcgc taaagaacca gagggcaaat ataatcgctt 900 actcttgtgg aagaaagact tttcagctca aaagctatat cgaacttccc tttacccccg 960 atgacaaatc tttggtcgct attagctaca tccgtgaggc acaaattaca cgaaggaatt 1020 gccatatatt ggtttgcacg cttcgcgcct tcgctgtcaa actcacgtgc gaaatcataa 1080 cattcgaaaa attatatatg cagggtacat ggagctattg accaatcgcg tggctcgtta 1140 catttgaacc agacgacagc caatcagaaa tcgcttcact ccggcggttg gtgcgcgggg 1200 ggtctaaaca agctttctgt cggtaattcg cagacggtaa taatggaact atttccggct 1260 gcacgcaggc ta 1272 // ID Gypsy-23-LTR_NV repbase; DNA; NEM; 121 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-23_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23-I_NV; KW Gypsy-23-LTR_NV; Gypsy-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-121 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-121 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-23_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 478-478 (2007). XX DR [2] (Consensus) XX SQ Sequence 121 BP; 41 A; 26 C; 22 G; 32 T; 0 other; tgtcatggta tccctgtggt atccattaat tagcataaac acatgtgcta gaacccgcca 60 tcttgaatgg tacacacaaa gctagaagct ctattaaaag gttgagttac cagaaccata 120 a 121 // ID DNA-3-10_NV repbase; DNA; NEM; 440 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-3-10_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 3-bp TSD; KW NVREP284; DNA-3-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-440 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-440 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-440 RA Kapitonov V. and Jurka J.; RT "A family of DNA-3-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 89-97% identical to the consensus. It was reported CC originally as the unclassified NVREP284 tranpsosable element CC [1,2]. XX SQ Sequence 440 BP; 106 A; 106 C; 91 G; 137 T; 0 other; agagacattt agcaccgcgt ttttttctcg gaaacggcaa acgtcaaacc tctgggtgtc 60 acgtgacaag gccttgcggt caagtttgca gtctgcggtt cgcgttttga cctcaggagc 120 accgtctagc ggtaagtgat ttacctcagc agttttcccc tcaaattttc tatgagctca 180 cgtttgagac catgaattag tgttcttaat catttgactc ttgaaataat atattttcat 240 tgacaatttg cacaattact aatacttttg gctcggttga agtcgagcac atgttttgca 300 ctttttcccg ccaaatgcca catttcccgc caaatgtgct aaactacgtt ttcgccagta 360 cgtcaaaccg caaaccggta acggctaacc gcggtttgcc gtttgcggtt gattctgaaa 420 acgcgatgct aaatgtctct 440 // ID DIRS-25_NV repbase; DNA; NEM; 4822 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-25_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4822 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4822 RA Kapitonov V.V. and Jurka J.; RT "DIRS-25_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 420-420 (2007). XX DR [2] (Consensus) XX SQ Sequence 4822 BP; 943 A; 1254 C; 1359 G; 1265 T; 1 other; ttttatgagg ctaaatgctc gcatttaggc aaggttagac tcacaacaca gggcagcgtc 60 tcagagatct agaggttatc cgtacgtgac ctgcgccggc gcgcgtggtg cagcggtatg 120 ctttcgaagg gtagctttgc accgagcggc aaatcctctc tgatcaaacg tcgtttcgtg 180 ctaagacgta ggaagcgatt tagctatttt ttcgtcacat ttctggtttt tcttcggcgg 240 tatggcggac aggccttcga gcgagttcat ggaagctatc cgggaggtga tgaaggagga 300 gattcgctct tttgcccaat ttccggcggc gagcagtgaa aaaccaataa catcgagtcc 360 aggacgagac gaaaacgggg tcggcgggga ttttccggcg tcaggtacca gggcgactcc 420 cgtaacgcca ggtatgttgc cagataccgt caacactttc tctatcgcgt cggcgccgtc 480 cggtgtggcg ggtttgagtg ctgctctccc gttatcggtc gcctcgggca gcgttgactt 540 gacggccatg gcgcccatga tgatgcattc tccggcggtc ggcgagccat ttattgtatc 600 caggtttctc gccagtccct gccaaactgt tatcatcaat tgtgggtggg cggttcgtgg 660 agcttagcga gcttttgact tcaaacctgc gagaggcaaa cttggagccg cagctcttta 720 tgaacggcaa tcttgtactt acgacggcaa ataagagacc tcggcgggtc atcgaggata 780 ttggggcgtg gtgtgaggcg ttttcgatct atgccctgat cctttgctct cagttccctc 840 agaggaatcg ggatttactg ctgtacaagt tagggatttt gcgcacttat cgccagttcg 900 ccggtcgcgt atggctgaat tacgatagag cgtttcgcga gcacgcggcc gcggccaagc 960 tgaccgattg gtcccaactt cacccgcaga tatttaacgt ttgcgcagcg ggagcgttag 1020 cccgcccgga agccggtagg ggtcgcccta caagttcgga agcatgtcgc tcgtggaatt 1080 tcgccaggtg ttacttcccg gggtgccgct acacccacca gtgcgcttac tgcgacggga 1140 accatccggc gcgcgagtgc ccgtcgagcg cagggcgaaa gcgcaaggcg tcgtctccag 1200 agccactacc tggaaaggag tcgcgcacgc ggtgggcctg agatggccca gggcggcagc 1260 aggatcgtca aacccttgtg gggtttgttg actgttttag agacagtagt ctaactagtt 1320 atggtacttt tacttaatat cttatgcgcc tattcttgca cctcagcagg ttgttgtatg 1380 gcagttgtgt atacgagggt tcttgtaagc ttataaacta gagtacttgt catagttgct 1440 gtttgttatg tctccccccc tccccttcct aggcagacgc ctgacccctc tactttcttc 1500 gttctttata cagattacgt acatatagtg cctatacttg ggggatggta gcttaggttg 1560 ttctttctat tcacagcgtt gcatggtctc cctcccgtgt cccaggtatc ccctttaagc 1620 ccagaggcct tcgctcggga actggcgtat cacccacaac cggaatgcgt cgagtacgtc 1680 atgacaggga tccgcgaggg ctttaaactg ggatttgagg gtactacccc gctcaaatcg 1740 gcgcgcgaca acaagctttc cgcgcgcaaa aatcctcagg ttatcgacga ctatttggcc 1800 aatgaggtca gattaggtag ggtggcaggc cctttccggt gcgcgccgtt accgcgcctc 1860 cataccagcg gattcggagt gattccaaag gcgggtcagc cggggaagtg gagattaata 1920 gttgacttgt ccgccccggc gggttgtagc gttaacgatg gtatcgatgc agcagcgttt 1980 tccttgcaat atgtgcgcat ggacgagatc attcaaatgg tcgcgcagtt cgggcccgga 2040 gctcagatcg caaaattcga tgtggaggcg gcttatcgca acattccggt tcacccttcc 2100 gatcggtatc tgctaggtat gaaatggcga ggcgattttt atgttgattt gactttggcg 2160 ttcggtcttc ggtcagcgcc ttatattttc aactgcgtcg cgaacatggt cgagtggatt 2220 ctcatcaata atcataatgt gcgccccctg gtacattacc tcgacgattt tattctagcc 2280 ggcccagcta actctcagta ttgcgccgcg gccctatcgc gctgtcgggt agtgtgtcag 2340 tcgcttggtg tgccactgca cccaggtaag tgtgtcgggc ccgccaccac gatcactgta 2400 ctaggcatag agctagattc atcttcccaa attgcacgcc taccggccga taagttgtcg 2460 gctctccgcg gtctcgtctc gacatggcgg gaatgcaagt gggccacccg caaccaactc 2520 gagtcgctga taggccacct tcaccatgcg gctaaggtag tatggccggg ccgtactttt 2580 catcggcgta tcatcgacct cttatgctgc ttccgccatc gggatcaccc aattcgtttg 2640 agcgcggaat ttcggcttga cttagcgtgg tggcataatt tcctttccgt gtggaatggt 2700 gtgagtttct ggttatttcc tggattacag gtggaggcga atatcgtcgt gacctcggat 2760 gccgcggggg cgattggtta tggggcgcat tatcgcgggg catggttcaa cggtcggtgg 2820 gaacagaatc agatagcgcg ttctattgca tacaaggagc tgttcccggt ggtcgtggcc 2880 gcgcacgtgt ggggtcacgg atggcttcga ggtcatgtac tgttccaatg cgataacgag 2940 gcggtggtcg cgttactcaa ctcccgcaca tcgaaagtac ctgagttgat gcatctgttg 3000 cgcagtctcc tatttgcagc ggcaaggttc aatttcttct tttcctccgt tcatatcccg 3060 gggcgccaca atcagattgc tgacgcattg tcccgttttc gttaccagga gttcaggcga 3120 gcggccccgt acgcggagtg ccatccgact ccaattccac cccaactgct tcgcgagctg 3180 acccctcgtc actagaacta cgctgcagaa cgtacctgtt ggaaggctta gcaccgtcca 3240 cgcggcgtac ttacgcgtcc gcgcaacgca agtttgtgac attttgtcag caactcggaa 3300 ggcttcactc gacaggttcc ccgtgcccag tagatgagtg gacactctgc ctattcgtaa 3360 ctcatttggc agcgtcgatt cggtacccat cctttaaagt gtatctatct gcggtgcgct 3420 cgctacacat cgaatctgga catgcggacc ctcattctaa ttgcgagcgg cttcagcgtg 3480 tagtgcgggg gattaagcgc tcgcagggtc cctctggctc accacagcgc ttgccggtat 3540 cctacgacat catgttagtg atctttcgtt ccttagacct ggctctcctt gatcatgcca 3600 tgttctgggc ggcgtgtaat ctggcttact ttggttttct aagatcggct gagttcacgg 3660 tccccaatgc gaaaagcttt agtccggcgc tccatcttca gttgtccgac ttggctttcg 3720 acgaacgctc taacccctct tgtgtgaggg tgtggattaa agcttctaag acggatccct 3780 tccgcaaggg ctgttatatc cacatcggcc ggggtactta cccgctgtgt gctgtcgacg 3840 ctctctcgac ttatataatc cgtagtgggg atattcaggg ccctctcttt cagttccagg 3900 atggccgacc gttaacacgt gcaaagctga cgacatggct gcgctcgata gtcgcggcag 3960 ctggtatccc agraaacttc tccagccata gtttccgaat aggtgcggcc tcagtagcgg 4020 cccagaatgg gattccagat catttgatcc agactttggg acggtggaga agtggggcgt 4080 atcaattgta tattcgcact ccggccagtg ctctagttgg ggcgtcacgc cgtttagcgt 4140 ctgcggtgta gcggcagtac tttagcttgc acagctttgt aaccgtatag ggctattaaa 4200 ccgttagtga gctcttaact tattcgatct ggtattttgg gttggtaggg tgtgtgtgtg 4260 tgtgtgtggg ggggggggta gatacgtagt agtggtgggt gcttgggtca ttttggtggg 4320 agggtccatg tctcccatgt ctcctctctc caagcacctt ggagaacagt tgggacggtg 4380 acatggttgc catggttacc gagcgcagca atctccattg ggcacccacc cgccaactca 4440 tctagtgttg atgagtttaa atgaggctaa atgctcgcat ttaggcaagg ttagactcac 4500 aacacagggc agcgtctcag agatctagag gttatgcgta cgtgacctgc gccggcgcgc 4560 gtggtgcagc ggtatgcttt cgaagggtag ctttgcaccg agcggcaaat cctctctgat 4620 caaacgtcgt ttcgtgctaa gacgtaggaa gcgatttccc tcccctccca tccctgatag 4680 gtatatagtt acttagtatt ccactgctta tcagtgtgac gggtgcccag tgtgggacgg 4740 tgacatggtt gccatggtta ccgagcgcag caatctccat tgggcaccca cccgccaact 4800 catctagtgt tgatgagttt aa 4822 // ID Mariner-N3_NV repbase; DNA; NEM; 1511 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-N3_NV non-autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Mariner-N3_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1511 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1511 RA Kapitonov V.V. and Jurka J.; RT "Mariner-N3_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 619-619 (2007). XX DR [2] (Consensus) XX SQ Sequence 1511 BP; 516 A; 291 C; 262 G; 442 T; 0 other; caccttttgc tgttcaataa cgggaaaggg acattcattt gtgccaaacg ttgtatcgtt 60 aacgtgcatt gtacgttcat caacatcgca cgaaacatcc ttagcgtgac tcgactttca 120 ataacaatga ttgaatatgc gcgaacattc aatagcatca acggacaatc aataacgcaa 180 ttgggcattc attcgggatg gaatgaacat tcttttgcat gcaatcgaaa attcaattac 240 acgtttggac aatcagtagc gtttattgac aatcagttat aaaaaataga aaattcatta 300 gtgctattaa cataaacaaa gacaatcaat aagccttttc agacaatcat gttcatcaat 360 gtgacattca tcaatgtggt ttgacaacca tttatccgat ttaaaccaaa caacaaggaa 420 aaataaaatt tcattagagt tactattttt ctcttttctt taaacagtgg gctcctaaaa 480 ttaagagaaa tatagaacta taaataattt ttaacaaaaa acaagacaaa caaacaacac 540 tttttgtgga gggtttataa aagcaaaaaa tatatactca ctcgttcgct atagaaaaac 600 agaaaacgtt tgtatgagaa atgccgccaa gaaacccctc gaacacaggg aagagctaga 660 agaggggaga gagagcgtac cgccaagtat gtggtcaaat tggaagaaat atcacagtca 720 ctttggctat ttcgcccact aacggtctta tcttccactt ttctatcatc gggggaatga 780 atgcacaaag attcaacgac ttcacaaaca cgactgaatc tttaccccaa cgaaaacgtc 840 atttttattt acgacggtgc accagcgcac cataacccac tagataccgg cccaaacact 900 gagctaaaaa gttaccgccc tacagcccat ttctcaacat cggaggctac aacataggaa 960 cagtcacggg agcgaaatgt gggcaatggt ttcgttttat gcaaacctat atacctcgct 1020 gtgttaatag agatcaattt caggtataaa tgtcacttca aaaatcgaaa taaaactaat 1080 gatattttct tttcttataa tgtttgtttg aatcgaacaa atgattgtca aaccacattc 1140 atgaatgtca ccttgatgaa catgattgtc tgaaaaggct tgttgattgt ccttgtttat 1200 gttaatagca ctaatgaatt ttctatttcg tataactgat tgtcattaaa cgctactgat 1260 tgtccaaacg tgcaattgaa ttttcattgc gcgcaaaaga atgttcgttc caatcgaatt 1320 gaatgtccaa gtgcgttatt gtttctccgt tgatgctaat gaatgttcac gaatattcaa 1380 ttattgttat tgaaagtcga gtcacgctaa atgatgtttc gtgcgatgtt gatgaacgta 1440 caatacacgc tatcgatgta acttttggca caaatgaatg tccctttccc gttaatgaac 1500 agcaaaaggt g 1511 // ID RTE-2_NV repbase; DNA; NEM; 3456 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone RTE-2_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3456 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3456 RA Kapitonov V.V. and Jurka J.; RT "RTE-2_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 656-656 (2007). XX DR [2] (Consensus) XX SQ Sequence 3456 BP; 963 A; 887 C; 800 G; 756 T; 50 other; cagtgggcag tggctaggcc tagcttggag caggtctaga atggagaagt aggacgcctc 60 cttccctcca ctagtctgtg ggagatcctt gggcaagatc gagtacccac ttagcccccc 120 gtgccagggt ttcggtgaag tcatggagac tgcatggcat aagctccctg ttgccttgca 180 ggtaggtctt ggttggccaa aggctaaggg agtaaacccc gacagaaaat ctggagtgga 240 gccccactgt cggtttgaag gcgtacttcg tccctctccg gcagctcctg caccctcggt 300 gagtctccaa ccgtcttgac cttgtcttgc cgttgggtca ggctcatcag ggcgagagag 360 tgaggctggt gctgcgcaag cctccttcac tttaatccaa attcagcgca tgtcatagct 420 ttaccaccat cgacaaccct caaccttcaa agccctgtgg cgatggggga gcggcgaagc 480 agcaggtgcg gaaacactgg aagctgtagc tgcaatcttg cacacaggcg gcttaggcta 540 tagggtcgtt cttctctgat tgggacagca gagaagtccg gcagccccct aagcgaccag 600 gcagccctat tcaggatagc tctgcctgcc tccatagcct gaggacggag ctagaaaaga 660 tgctctaaac atagcctgtt ccacaacaca cctggccagc ataccgcagt tggcgggttc 720 ccattttgcg gtcgaaataa caagaaaata ctcaagaaaa ctctcaaact cacccttgcg 780 tcatggaacg ttagatctct tctcgactcg tccacctcta agtcaaggag accagaaaga 840 cgaacggccc tcgtagcgag agaacttgcc cgctataacg tcgatattgc agccctcagc 900 gaaacacgct tcccagacaa aggccagctc agtgagatcg gaggcggcta cactttcttc 960 tggagtggcc gcagcagtga agagcgacgt gagtctggtg tcggctttgc aatcaaagac 1020 catctcatac ggaaacttga cagtatacca gaaggcataa atgatcgtct catgaaattc 1080 aagctccccc ttggcagagg gagatccgct acccttatta gcgcctacgc acccaccatg 1140 acaaacccgg aagatgctaa ggagaagttc tatgaagaac tggatgcgct tatttccact 1200 attccacagt cagaaaagct cctacttctt ggcgacttta atgctcgtgt aggtcaagac 1260 caccaggctt gggaaggtgt catcggacac catggagtag gaaaatgcaa cagtaacggt 1320 ctcctcctgc ttagaatgtg cgccactcac ggcttagcta tcactaacac catgttccgc 1380 cttccaactc gaaagaaaac atcttggatg caccctcgat ctaagcattg gcatctcatt 1440 gactacgtca ttgtcagagc aaaggatata cgggatgttt gtgtgactaa ggcaatgtgt 1500 ggtgctgact gttggacgga ccatcgcctc atcatttcta agaccaattt gcatattcag 1560 cccaaaagaa gaccacaggg ccagacagtt gtgaaaaagc tcaatgtcaa caagcttaag 1620 ctcccttcca ttcaagagaa actagtagaa agcttagaaa atcaactgac tgaggatatt 1680 ggaaacgact ggaactcctt aaagacaaca attcattctg ctgcccttga ggtgctcgga 1740 tcagttacca ggaaccatca ggactggttt gatgaaaatg atgccaaaat cacagctctt 1800 ttggaagaaa aacggcaact cttcagagct catcaaaatg atcccaactc agtctcgaag 1860 aaagacgcct acgtcagcaa acgcagacag gtacaattaa aactccgtga cattcaagac 1920 acatggctga gtgacaaagc tgatgaaatt caaggctttg cagacagaca cgacacgaaa 1980 cgattctacg attcgctcag atgtatattt ggaccaccnn nnnnnnnnnn nnnnnnnnnn 2040 nnnnnnnnnn nnnnnnnnnn nnnnnnnnct ctataccact tttgtagatt taacaaaagc 2100 gttcgacact gtgagcagag agggactgtg gaaaatcatg gcgaagttcg gctgccccga 2160 gaggttcata aagattgtta gacaatttca cgatgggatg atggcccgtg ttcttgataa 2220 tggaaatacc tctgcccctt ttcaagtgtc aaatggagtc aagcaaggtt gtgtccttgc 2280 acctacactg tttagtttga tgttctctgc aatgctgact gatgccttca gggagatacc 2340 cctaggcatc cccatcaggt ataggtgtga tggaaagctg ttcaacctac gacgtctgaa 2400 ggccgtcact agagtcaaag agactgtgat tcgtgacctg ctttttgctg atgactgtgc 2460 cctcaacgcc gtcaatgagc atgacatgca acaggaaatg gacgctttct catccgcctg 2520 tgacaacttt ggcctcacca tcagtatcaa gaagactgaa gtgatgtatc agcccgcccc 2580 aggaaaacca tatcaggaac caaacatcac agttaagggg cagcgacttc aagatgtaga 2640 aaacttcacc tacctcggca gcactctctc ccgcaacgcc aacatcgatg cagaaatcaa 2700 caaccgcatc gcgaaggcaa gcagtgcctt tgggagattg aggaagtcag tctgggaacg 2760 cagaggcatc tcacaatgca ccaagatcaa agtgtacaga gcagtcgtct taacaacact 2820 tctctatggc tgcgaaactt ggaccatcta cagaagacat gagaaacttc tccagcagtt 2880 ccatctccgc tgtctcagaa acatcctaaa tatccgctgg caggatagaa tcacaaacac 2940 tgaggttctg gagagagcaa acctccccag cgtcattacc accatgcgca aagctcagac 3000 acgatgggca ggacacgtct gccgtatgtc agactccaga atacccaaac agctgttgta 3060 cggtgaacta agccgtggaa gcaggaaagt tggaggccag cgcaaacgct ataaagactg 3120 catcaaatca catctgaaag acttcaatat cgacgtttca acgtgggaaa ctgcagcatc 3180 tgacagaccg atttggcgta atctgattca caaaggtgcc atccactcag aaaataaacg 3240 ctccaacgca gccaaaaaca aacgccaaaa acgcaaggct agagctgacc aacctaccaa 3300 tatgaccccc tcttactggt gtccgacttg tggaaggggt tttcttgcac gaattggcct 3360 tataagccac ctgcggattc atccctccgc cccttagaca ttgttatact gtcagtattg 3420 ctatggtcat actcgactac gagttgacga acaaca 3456 // ID Gypsy-58-LTR_NV repbase; DNA; NEM; 195 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-58_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58-I_NV; KW Gypsy-58-LTR_NV; Gypsy-58_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-195 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-195 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-58_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 552-552 (2007). XX DR [2] (Consensus) XX SQ Sequence 195 BP; 61 A; 37 C; 38 G; 59 T; 0 other; tgtgacgtta atttaatact actcccattg attgcgtgat taattgtgtg attaagctga 60 gacaatcata ttgtaatagg acccgcagtt cggggtgtag gagcacacag attaaaacag 120 taaaaggagc tcagaaataa cctaaacctt tagttctctt tcttgccttg taaagtctcc 180 tacgacaacg ttaca 195 // ID Gypsy-8-I_NV repbase; DNA; NEM; 4133 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-8_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8-I_NV; KW Gypsy-8-LTR_NV; Gypsy-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4133 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4133 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-8_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 580-580 (2007). XX DR [2] (Consensus) XX SQ Sequence 4133 BP; 1204 A; 1140 C; 928 G; 861 T; 0 other; actggcgacg agctggtgaa ggactcaacg accaaaggat cgtaagtaaa cactgcaatt 60 cctgcattta ctcctcgatc aaatcttacg gaattcaaga tggctgccag tcatacgata 120 ggcaacatgc agccgtttga cgaagccaca gaaacattca cttgttacgt tgaacggtta 180 gagctattct ttgatgctaa caacataaat gaagacaaaa agacagcctc gctacttagt 240 ttaatcggtc ccaaaaccta caatctgtta cgaggtctga cctcacccag aaaacccaag 300 gacaaaacat accaagagat catagaaata cttgagggtc atttatcacc acccccgctc 360 gaaattgcag agcgttacaa attccaccaa agaaatcaag cgcttggcga agatatcaac 420 gcatttgtgg cctcattgaa acaaatgact gaacattgta attttgggga atttcttccc 480 caggccctcc gcgatcgatt tgtttgtggt ttagcaaatg aatctatttc taagaaattg 540 ctgtgcgagc gcgatttaac cctagaaaaa gcagtcacca tcgccaaagc aatggaacag 600 gcagggaaag gtgccaatgc attccaccaa gcacacacaa tccctgagac tggagcccag 660 acccccgaat ctgcccggcc acatcagtcc cgcgttttca aaatggagca aaccccacag 720 aaatgtatga gctgtggcaa aaacacacac gcgcgcaggg actgtaagtt ctacaatgcc 780 atttgccgca tatgcaacaa gcgcgggcat atttctgata tctgcatgtc cagtatcaat 840 cgcaaaaaga gcaccccaag caagaccaaa cccacccact gcgtagagca ggaaatctca 900 gagggggagg aagatgagat ccagtgctta cacattttca aatgtgatac aaccagtccc 960 cctattctag tacaagtcaa cattgaaggg tccccggtta gcatggaact ggacacgggt 1020 tcgtcagtgt caatcatccc gcgcaatgtt tacgagagta catgcaaaca cctagagctc 1080 aaacccgcta aagtaaagct tcgcacgtat ggtaatgaga taatagtccc tatgggtgtg 1140 gtcagcgcga acattagtta taacgaccaa tgctgtgagg caaagatgta tgtcgtggat 1200 ggacctagag ttgcactctt tggtcgctct tggctgcgcc tattcaaact cgattggcca 1260 tcaatcaagt tggttcaagg caagaacact gcactgtcag acctcacaga gaagtatcaa 1320 gatgttttca gcgacgaact aggctgtctc aagggatatg ctgcgcagct acacgtccgt 1380 gatggggcaa ctccagtaca ccaaaagcac cgcacagttc cttttgccat ccggcaccag 1440 gtggaaacag aactagagaa cttagaaaaa caggggataa tctctcctat ccccaatagc 1500 gaatgggcaa cacctgttgt cccggtggtg aagaaatctg gtggtatacg cctatgcggg 1560 gatttcaagg tcacgttaaa ccctgagcta gtggccgatt cctatcccct tccaacccta 1620 gatgatctgc aagaaaaaat gaacggtggg tctttctttt ctaagttaga ccttaccaaa 1680 gcatactccc agataccact cgacgactct gctaaacagt tcacaaccct gaccactcac 1740 aaaggattgt acgcctacaa tcgacttcca tttggcgtag cgtcctcagc ggcgattttc 1800 cagcgacaga tggacagaat tttcaaggac cttccacaag tactgtgtta ccaagacgac 1860 atcctggtga caggaagaga cagcgaagaa caccttacaa acctggaaga agttttgcga 1920 cgcctacacg ccaacggtct cacagcacaa cgagagaagt gcgaattcat gcagccatcg 1980 ctgaaatacc tcggccacgt catcgacaaa gacggaatcc accccacgag tgacaaggta 2040 gaagccatca agacggcacc atcacctcag gatgtaaccc agctccgtgc gttcttaggc 2100 ctggtaaact actaccagaa gttcctaccc aacctatcac aggtcttaca acctcttcat 2160 caactgctga agaaggacac caagtggtgc tggagtgcca aatgccagaa agcgttcacc 2220 aatgtcaaat caatgatcac agttgacaac gtgctggtac cctataaccc agatctccca 2280 atcatactcg actgtgatgc gtcggcatac ggcctgggtg ctgttctgtc gcaccaaatc 2340 cccgatggga cagagcgtcc catcgcgttt gcctcgcgaa caatgaacag cagcgagaag 2400 aactacgcac agatcgacaa agaagccctc tccatagtct ttggcgttac cagattccat 2460 atctatctct acggacgcaa cttcaccctc agaacggacc accagccgct catggccata 2520 ctgggcccca agagaggaat ccctcccata gcagccatgc gcatgcaacg atgggccacc 2580 aagttatcgg catactcgta tgatatccaa tacaggtcat ctaatgacca ctccaacgca 2640 gatgctcttt ctcgcctccc ccaacacaag gctcccaagg atgggtattt tgacctcgcc 2700 gatttatacc aagtggaaca gatggatcgt cttcccgtca cagcagatga cataagagag 2760 cacacggcag ctgacccctt gcttcacgaa gtacacgatt atgtgctgaa cggattccct 2820 cgcacgaccc cgagcgacaa tatgaagccg ttcctgacgt gtgcacccga actatctctt 2880 cacgagggat gtgtcatgcg aggccatcgc gttgtcattc cgagcgcact gagagcacgc 2940 actctcgacg agctgcacga gagtcattta ggaattgtca agatgaagga gcttgcccgt 3000 ggccacatat ggtggccagg aatagataaa gacattgagg acctggcaaa gagttgtgga 3060 ccgtgcaaca ccacacggaa tgcaccccca tcgcagtacc acccatgggc ctacccacaa 3120 gcaccatggg agaggataca cattgacttt gccggacccg tggatgggat acattttcta 3180 gttgttgttg acgcttactc caaatggctg gaaatagttc ccatgcgcac gactacagct 3240 ccggcaacca tcaaggttct tcatgatctt tttgctcgtt tcgggctacc cattcacgta 3300 gtcagtgaca atggctcaca attcacttca gaagctttcg acaagttcat gaagcagaat 3360 ggcgttaaac acaccactac agcaccgtac cacccaaaga gcaacggcca ggctgaaaga 3420 ttcgtccaaa ccttcaagtt ggcatacgaa gccgggcagg gtcctccatc gcagatcatt 3480 gccgacttcc tcttgaaaca gcgcaacacc tctaatgcaa ctacccagca aacaccggcc 3540 aaactgatgt tgggaagaaa cctgcgcaca cgtttagatt tgttgtcgcc atacagacca 3600 gcatctccta agacggcacc tgcactatca caaccgtcac gatgctttac cattggccac 3660 aaggtatggt atcgagactt cagcgtctct ggtgggaaat ggtccccagg gtgcgtaaca 3720 acaaagatcg ggaatgtgat gtacgaagta cagccagaca agttccccca acaacacgtt 3780 cgacgtcatg cagaccagct ctgcgaaaga accgcacctc cttatcaaga tagcatgtct 3840 caccgagatc accagctact tccgatgacc acgccagcag ctgagccact cagctgcaca 3900 gagggagatg gcgacgctac agaaacatta aatccccctc aaacaacaag acagcaaaat 3960 ccaccgacga tcagtgagga agttcccgag gatgcgggag agccggacat gcctaggagg 4020 tcgtcacgcg cgaacaaggg catagcgcca gacaggctga acttataatc ggacacgtta 4080 cttcgttagt taggctaccc ccgaccccac agcttcctta gaagaggggg aaa 4133 // ID DNA-5-17_NV repbase; DNA; NEM; 175 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-17_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-175 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-175 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-175 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-17_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 175 BP; 39 A; 42 C; 53 G; 41 T; 0 other; caggggcgga tccagaagtt ccaaaaaggg ggggccgaag caagggtttc aagaaagggg 60 gggccggatt cattgttctt ccgtggattt ccttatattt cttgttattt ttaagccaaa 120 tatctgaaaa taggggggcc ggggcccgct cggcccaccc ctagatccgc ccctg 175 // ID BEL-10-I_NV repbase; DNA; NEM; 5516 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Internal portion of the BEL-10_NV autonomous LTR Retrotransposon DE - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP460; KW BEL-10_NV; BEL-10-LTR_NV; BEL-10-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 4786-5516 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 4786-5516 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5516 RA Kapitonov V. and Jurka J.; RT "A family of BEL-10_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 97-99% identical to the consensus. XX FH Key Location/Qualifiers FT CDS 18..5513 FT /product="BEL-10-I_NV_1p" FT /note="Contains the aspartic protease, reverse FT transcriptase and integrase domains." FT /translation="MEELQRLIASRRGHRSHLTKLMKKSEEIFTKDGGFTE FT LELASAKNTTQQLEAKAGKLRDLDEIIAPKIEKPEDLEEEIMETEEIQEGI FT TDMIAKLSVIINNDNVPSVNTPSPVVPPSVASTSSPQSASSMSQNPTNIDP FT TQVVPPSNTTQVVPPPNITHPSNQPFIPQASNFNSYSTRLPKLNLPVFSGD FT PLEWMTFWDSFNVAVHSKPGLPDVDKFNYLKAQVSGEAEQAIGGYLISGDN FT YVKALATLKERFGQTHRVTNAHMTALLDLQYPTSNLESLRPFCDALETNIR FT ALEALGKSQDSFGELLIPVILGKLPNETKRNLARTQQGGDWTIQGLREALK FT HELKVLEAGSPLLSESTPTASFFTGVKGPHPQGKGKPKVIQCVYCKGKHST FT HNCATVSDPKARKDIVVKLRLCYNCLSSSHISSKCTSKFRCRQCGGKHHTT FT ICERDKGQGPHPGNKEPPPQAEPSQSVHTTLAPAHPYGITHEYPILLKTAV FT SHVRVGNTSREVNILLDEGAQRSFITKKLADELGAKPISRENISMSAFGAT FT EHSLRRLEVTNVEVISEQGDRIPLRVLVVPHIATPLQCKHHTDVSNMPHLK FT GLKLAHPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAMQSKLGYLLS FT GPVRARGVQGNVTNIFHISAHQEDEFDLQQFWSLESMGISPNADPPEKNFL FT TNYQATSITRDEDGTYIAGFQWKEEHAPLPTNFSICERRTRATARRLHQTP FT DLMKSYDDIIKEQEARGFIEKVSNPDPSDHAHYIPHHHVKKESSTTPIRIV FT FDCSCHQAPSTPSLNDCLEVGSPYLADMGSILVRFRAHPIGISTDIEKAFL FT HVRLSEADRDMTRFLWLSDPGDPESEFQTYRFKSVLFGSASSPFMLNAVLQ FT THLDNHKTPVTQDMRDNLYVDNIITGCETHQEALSYYDESRSVMTEAKFNL FT RSWASNSQPLLHRAALDGVNDANCDSVNVLGLRWDTSTDTLTLACKELLAP FT DDTLVTKREILRESSKIYDPLGLITPISIRAKILIQDLWKLNVDWDEPLNG FT EIRTRWLSIAQEIRQSTNLTIPRCYLSNRSANETTQLHVFVDASPKAYGAV FT AYIRQANQTSFVMAKSRVAPVKELSLPRLELMAALAGANLAEYLLNSLQKN FT FPDLQAFFWSDSQIVLNWLHSNKQLQQFVGNRVREIKRLSQPSSWRYCPTR FT DNPADLLTRGLTTAELQASTAWLHGPSWITSECDWPTWESSTTLLVEIPEE FT EPKVTPEPDVLGEQTNSEADATSVENPSISTIMDPTRHSTLRKLLRVTALV FT LRFVHNLRNPTDRRNGPLMVTELTKAERTWIHDRQRHSYAKEIANLSAHDK FT SGTPLTRQLRLFMDDDGLLRCGGRIHNAPVSETAKFPVLLPKKDYVTTLII FT CDTHERQLHAGVSSTLTALRQKFWVPSGRFQVKRVLNKCVTCQKVNGAPYR FT APDAPPLTSLRLRESRPFAVTGVDFTGELYIRNGKTDSKAYICLFTCAATR FT AVHLEVVSDLSVKTFILAVRRFASRQSIPDVIISDNASTFQSAAAELEHLF FT NSPTLKQELGKQGIDWKFIPKRAPWYGGFWERLIGLTKTTLKKVLGRASIN FT LVTLQTVVMEIEAILNDRPLTYVSPDINDEDPLTPSHLLYGRRITSLPHPD FT TDADELTDPSYGNDDHLRRDATRVALVIQHFWQRWKQEYLTSLRCFHGATG FT GSGETRVKIGDVVQIHSEKKRLKWKLGVVEDLIRGADGCVRAVTLKTAKGH FT TNRPISKLYPLEITTDVVETADAQTGGQLQSNQPIRRSMRITAATRDRIAD FT WARQLRAPPG" XX SQ Sequence 5516 BP; 1551 A; 1485 C; 1265 G; 1215 T; 0 other; ttggtgccgt gaccaggatg gaggagctgc aacgtctaat tgcctctcgg cgaggccaca 60 ggagccatct tacgaagtta atgaagaaat ccgaggagat ttttaccaaa gatggcgggt 120 ttaccgaact cgaactcgca tcggcgaaaa acacaacgca acaactcgaa gcaaaggctg 180 ggaaactccg agacttagat gagatcatag ccccgaaaat tgagaagcct gaagatttgg 240 aggaggaaat aatggaaacg gaggaaatcc aggaagggat cacagatatg attgcaaagc 300 taagtgtaat cattaacaat gacaatgtac cgagtgttaa tactccctcc cccgtcgttc 360 cgccgtctgt cgcttcaaca tcctctcccc aaagcgcttc ttccatgtct caaaatccaa 420 ccaatataga tccaacccaa gtcgtgccac cctcaaacac aactcaagtt gtcccgcccc 480 caaacattac tcaccccagc aatcagcctt tcattcccca agcaagtaac ttcaactcct 540 atagcacacg tctcccaaag ctgaacttgc ccgtttttag tggggacccg ttggagtgga 600 tgaccttctg ggattccttt aatgtagctg ttcacagcaa gccaggcttg cctgatgtag 660 acaagtttaa ttacctaaag gcccaggttt caggggaggc agagcaagca attgggggct 720 acctaatttc aggggataat tatgtgaagg cactggccac tctcaaggaa cgttttgggc 780 aaacacacag agtgacgaat gctcatatga ctgccctatt agatctgcaa tatcccacaa 840 gcaatcttga gagcttgcgc cccttttgtg atgcattgga aaccaatata agagcactag 900 aagccctcgg caagtcccaa gactcctttg gggaactcct tattcctgtt attttaggaa 960 agctccctaa tgaaaccaag cgcaacctag ccaggacaca acaagggggg gactggacca 1020 tacaaggtct gagggaagct cttaagcatg agcttaaggt tttagaagca ggatcccccc 1080 tcctgtcgga atctacaccc acagcctcat tctttaccgg ggtaaagggg cctcatcccc 1140 aggggaaagg caaacccaag gtcattcagt gcgtttactg taaagggaag cacagtacac 1200 ataactgcgc caccgtttct gaccctaagg caaggaagga cattgttgtc aagctgaggc 1260 tctgttataa ttgcctttca tcctcccata tcagctccaa atgcacctcg aagtttcgct 1320 gccgtcaatg cggaggtaaa catcacacca caatttgtga gagagacaaa gggcaaggtc 1380 ctcaccctgg gaacaaggag cccccacccc aagcagagcc atcccagtcg gttcatacca 1440 cattagcacc agcacacccc tatggcatca cccatgagta tccaatactt ctaaaaactg 1500 ccgtaagcca tgtcagggtt gggaatacta gcagggaggt gaacatactt ctcgatgagg 1560 gcgcgcaacg ctccttcatt actaagaaac tcgctgacga actcggcgca aagcctattt 1620 caagggagaa tatctccatg tctgccttcg gggcaacaga acattccctt aggagactag 1680 aagttacaaa tgttgaagta atcagtgagc aaggggatag gattcctctc cgggtgcttg 1740 ttgttccaca tatagccacc cccctgcaat gcaaacatca cacagatgtc agtaacatgc 1800 cccacctgaa aggattgaaa ttagcacacc cagtgtccag tggtaatttc gagatcaact 1860 tgttaattgg tgctgaccat tactgggaca ttgtacaaga taagattatc cgaggggaag 1920 aggggcccac agctatgcag tccaaattgg gctatctact atctggtcct gtaagggcca 1980 ggggggtgca gggcaatgtg actaacatat ttcacatttc agcccaccaa gaagatgaat 2040 ttgatctaca gcaattttgg tccctagagt caatgggcat atcacccaat gctgaccccc 2100 ctgagaagaa cttcttgact aattaccagg ccacctcgat cactagagac gaagacggca 2160 catacattgc tgggtttcaa tggaaggaag agcacgcccc tctcccaact aacttcagta 2220 tctgcgagag acgcacaagg gctaccgcac gacgacttca ccagacacca gatttgatga 2280 agagttatga cgacatcatc aaggaacaag aggccagagg gttcattgag aaggttagca 2340 accctgaccc gtctgaccac gcccactaca taccccacca ccatgtaaaa aaggagtcat 2400 cgaccacgcc cattcgtatt gtcttcgatt gtagttgtca ccaggccccc tcgaccccaa 2460 gtctgaacga ctgcctagag gtcggttcac cttacctagc cgacatgggc tcgattttag 2520 tgcggtttcg cgcccaccct attggaattt ctactgatat agaaaaagct ttcctccatg 2580 tacgtctcag cgaagctgac cgcgacatga cccggttcct atggctctcc gatcccggtg 2640 accccgaaag tgagttccag acctaccgtt tcaagtcggt cctttttggc tctgcgagct 2700 ccccctttat gctgaatgct gtccttcaaa cacaccttga taatcataag acaccagtca 2760 cacaggacat gagggacaat ctctatgttg acaacatcat caccggctgt gaaacacacc 2820 aagaggccct gagttactat gacgaatcaa gaagtgtcat gactgaagcc aagttcaact 2880 tacggtcttg ggcatccaat agccaacccc ttctccatcg tgctgccctt gatggagtga 2940 atgatgccaa ctgcgacagt gtcaatgttc taggcttacg gtgggacacc tcaaccgaca 3000 cgctaacact tgcatgtaaa gaattactag cacctgacga cactcttgtc acaaagcgag 3060 agatcttaag ggagtcatct aagatctatg acccactagg cctcatcacc cccatctcaa 3120 tccgcgctaa gatccttatc caggacctct ggaagttaaa cgtagattgg gatgaacccc 3180 tgaatgggga gatacgaact cgctggctca gcattgcgca agaaatccga caatcaacca 3240 atcttactat tcctagatgc tatctcagca atcggtcagc caacgagacg acccagctgc 3300 atgtgttcgt ggatgctagc ccgaaagcct acggagctgt ggcatacata cggcaggcca 3360 atcagacttc ctttgtgatg gcgaagtcac gtgtcgctcc agtaaaggaa ctgtcactcc 3420 ccagactaga attgatggca gcactggctg gtgcaaacct tgcagagtac ttgcttaact 3480 ctttgcagaa gaattttcct gatctacaag cattcttctg gtcggacagc cagattgtgc 3540 tcaattggct tcacagtaat aagcagcttc agcagtttgt aggtaaccga gtcagagaaa 3600 tcaagcgtct ctctcagcca tctagttggc gttactgccc cacacgcgat aatccagcag 3660 acctactaac gaggggtcta accacagcag agctccaagc atcaacagca tggctgcatg 3720 gtccatcctg gataacttca gaatgcgact ggccaacgtg ggaatcaagc accacccttc 3780 ttgttgagat cccagaggaa gaacctaaag ttaccccaga acctgatgtg ttaggagagc 3840 aaaccaactc tgaagcagac gcgacttcag tcgagaatcc aagcatcagc acgatcatgg 3900 atcccactag acacagcaca ctgaggaaac ttctacgtgt aaccgctctt gtactgaggt 3960 tcgtccataa cctcaggaac cccactgacc gcagaaacgg acctctgatg gtcactgagc 4020 tgacgaaagc agaaaggaca tggatccacg atcgccaacg ccactcttac gccaaagaaa 4080 tagcaaacct ttccgcccat gacaagtctg ggaccccttt gacacgccag ctgcgcctgt 4140 tcatggatga cgatggctta cttcgctgtg gcgggaggat tcacaacgcc cctgtttctg 4200 aaaccgccaa gtttccagtt cttcttccga agaaagacta cgtgacgacc ctcattatct 4260 gtgacacgca tgaacgccaa ttacatgctg gcgttagctc gacactaact gcattacgcc 4320 agaaattctg ggtgccttcg ggaagattcc aagtaaaaag ggtcttgaac aaatgcgtaa 4380 cgtgccaaaa agtgaacggt gctccatacc gagctccaga cgctccgcca ctaacaagcc 4440 tcagactccg ggagtcccga ccctttgcgg ttacaggagt ggactttacg ggagaactat 4500 atatacgaaa cgggaaaact gactcgaagg cctatatctg tttgtttaca tgcgcagcta 4560 ctagagctgt acatcttgaa gtcgtttcag atttatcagt caaaacattc attctcgccg 4620 tacgtagatt cgcaagccgc cagtccattc cagacgttat catttctgat aatgccagta 4680 ccttccaatc ggcggctgct gaactcgagc acctgtttaa ttcaccaacg ctcaaacagg 4740 agctcggcaa acaagggata gattggaagt tcatcccgaa aagagctcca tggtatggag 4800 ggttttggga gaggctgatc ggcctcacga agacgacgct gaagaaagtc cttggccgag 4860 catccatcaa cttagtcact ctccagacgg ttgtcatgga aattgaggct atccttaatg 4920 accgcccact aacatatgtc tctcctgaca taaatgatga agaccctctc acaccatccc 4980 atctactgta tggaaggagg attaccagtc tcccacatcc tgacactgat gcggacgaac 5040 taactgaccc gagctatgga aacgatgatc atctccgaag ggatgctact cgtgtagcac 5100 tagttataca acacttctgg cagcgctgga agcaggagta cctcacttcg ctgcggtgct 5160 tccatggcgc aacaggtggc agcggtgaaa cacgcgtcaa gataggagac gttgtccaga 5220 tccacagcga gaagaagagg ttgaagtgga aactaggcgt agtggaagat ctgattagag 5280 gtgccgacgg atgtgtacgg gctgtaacct taaaaacagc taagggtcac acgaacagac 5340 ctatctccaa gctatatccc cttgagatta ctactgatgt tgtggaaact gcagacgcgc 5400 agacaggagg tcagctccag tccaaccaac ctatcaggag aagcatgcga attacagctg 5460 ccacaaggga ccgcatcgca gactgggccc ggcaactacg cgcccccccc ggagga 5516 // ID hAT6-1_NV repbase; DNA; NEM; 4554 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 31-DEC-2007 (Rel. 12.12, Last updated, Version 1) XX DE Starlet sea anemone hAT6-1_NV autonomous DNA transposon - a DE consensus sequence. XX KW hAT; DNA transposon; Transposable Element; 6-bp TSDs; hAT6 group; KW hAT6-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4554 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4554 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1192-1192 (2007). XX DR [2] (Consensus) XX CC hAT6-1_NV is a young family of hAT DNA transposons and it belongs CC to a novel group of hAT transposons, called hAT6, generating 6-bp CC target site duplications upon their insertions into chromosomal CC DNA. The hAT6 transposase is remotely similar to the standard hAT CC transposase; identified hAT6 transposase sequences form a CC distinctive phylogenetic cluster and they are also present in CC different species, e.g. sea urchin. hAT6-1_NV is flanked by 14-bp CC TIRs (3 mismatches) and encodes a 714-aa transposase (2 exons). CC The transposase contains the C2H2 zinc finger motif present in CC diverse hAT transposase sequences encoded by different hAT CC transposons. The hAT6-1_NV family is younger than ~1 million CC years (copies are less than 1% divergent from the consensus CC sequence). XX FH Key Location/Qualifiers FT CDS join(485..733,1802..3694) FT /product="hAT6-1_NVp" FT /note="transposase." FT /translation="MSDRIKEGSSRSSVSSECDRDVDFEVIDSDIAEIEDN FT DYADPSKSPPKKKKRLHSKTVFNREWSRLFPCIQSVKGQPHKAHCTVCDAS FT FSVCHQGKRDVDRHLAGTEHKRASKTTSEHKSVKSFFVADKQKDAVTNAEV FT LYTGYILEHNLPFESTAHAGELFRKMFPDSEIAKKYGCAPTKTAAIVNYAL FT APEMLDPVVQYIKTQPFSLAIDGSSDTGTASMYPLVVRIYDVNRGEVASQF FT WHMCLISDCTAQGIFNSVSDVFRDYEVPWENVIGLSLDNASVNMGKHNGLY FT RHFERKNASVYTFGCPCHIVHNTASYGAKAYAEAAGFDLGDFLVDIYYYFD FT NSTKRQASLKDFCDFCDQDYRKILKYGATRWLSRELCVSRVLKQYPSLQSY FT FASQPELRSDKRLCRLREYFADPKTEIHLMFFQSILPVFSELNKQLQGEEP FT QIHCLRQGLSDFLQKLLGRCMLATSYKDKDLDDRASMNFENEDLFLSPKDV FT MIGFTTRTTMQKHNLLPEEEKKLAQDCRKFMTASLQYACKNFPLKDPLLKH FT AEFLNFHERANQTFDSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGND FT SQLSDLSRIDHIWMYLGKMEGKNGLRFGLLAQVAQYVLVLPHSNAAEERIF FT STVEKNKTKYRGSLSNTTTLPSILTCKTNYFNHTHCYMFKPTKSVLQKAKK FT AATTYNADHSSTSK" XX SQ Sequence 4554 BP; 1445 A; 830 C; 864 G; 1415 T; 0 other; cagacctccc aagtgacccg catctggcgg gtcagacccg caaattaacc accaaacccg 60 cggacccgcc agcataataa aaaacccgct tatgtgaaaa attttttgat gaaatctttt 120 tccctccgtg acacggtgtt accgtgtata tcaatcgaac gaaaccgcaa acagctgttc 180 cagaataatt ttagcaaaac gaaaacgtca ctgagaccct cttgtatcaa gccgtttgat 240 tggctaatgt cagaaggact gtcgctaaga ggcactgtgg ctaatgaaga gtcagagcca 300 accaggaaag cttttttaaa tgctgtattt ggcggaaaca cattgctttg taacttgttt 360 acgctagttt cacacatgtg tttagtctct taatatttgc aggtattttg acgttttttc 420 ccaattttcc acaacttcat aagtctagaa tctgttaata taaagttgat aactaaagtt 480 gacaatgtct gatagaataa aagaagggtc aagtagatcc agtgtcagta gtgagtgcga 540 tcgtgatgta gactttgagg ttattgactc cgacattgct gaaattgaag ataatgatta 600 tgctgaccct agtaaatcac caccgaagaa gaaaaaaagg ttgcattcca aaacggtttt 660 taatcgcgaa tggtcacggc tgtttccttg tatccagagt gtgaaaggcc agccacataa 720 agcacactgc acggttagta taataacata caggcggcag tagtaaacat agaatctact 780 atttactcta gatctattac aatgtcaatt atggtcaggt ctgttatagg cctgtcagag 840 tgtcaaagca tatatctaca tgtagatcta tatatatctt aaatttataa tttataaata 900 aacatttatg tttatagacc tgcaaaagta gatctaatat tatacagaaa tatacaacat 960 gtaaaataaa aaatccagta caatattcct atagacaggt cttttgaagt gaaataattg 1020 ctatatgtct ttacataata tttatgcaaa tcagtgataa aactctgaat ctacactgaa 1080 gatgcaagct ctttcattat gaacattaag tgtaaaagtg atattataat atgtggaata 1140 tatttttcaa acagggacat tcacaggtag aaagaaaggt tatttttttt tttgctattt 1200 ctgtgtcaag aatttctttc tgtatttttc tcattttata aatatataat aatatgtacc 1260 taatatggga gtaagtattg gtccagcagg atattcattg taaatatgtg gttattgggt 1320 tatttacaat tacatatatt ctttcatctt attttttcta taaattgctt ataaaggtga 1380 tgggaaaact ggttttaatg tagaaggtgt gagatagtag aatccttaga gcttatttat 1440 ttctctcatc tgaacttatt cagaaactgt caggcattta gatatatatg gtgtttgtca 1500 gacgattttt aaaagtgttg atattgaaag taactgaata ttttttgaca atacataaat 1560 atgataaata gtaatttatt acaataaatt aattcataca ctttatgatt atacattcag 1620 ttatagtttt aataattaca cagactgagt aactataagt tgcatgaaaa atatatatgt 1680 acatgtatac taggcgtata taaaatttta tataatatta aaaacataat tttataactg 1740 aatcacttca ggtgattatc atatatagca tgtcttttac tcatacatat tattattaca 1800 ggtgtgtgat gcaagtttct ctgtctgcca ccagggaaag agggatgtgg atcgccatct 1860 tgcagggaca gagcataagc gtgcttcaaa aacaacctca gaacacaagt cagtaaagtc 1920 attctttgtg gccgacaagc aaaaagatgc tgtaacaaac gcagaggtac tctacacagg 1980 gtacatacta gagcacaatc tgccatttga gtcaactgca catgctggag agttgtttag 2040 aaagatgttt ccagacagtg aaattgccaa aaagtatggt tgtgctccaa cgaaaacagc 2100 tgccattgta aactatgccc tggctcctga aatgttggac cctgtggtac agtacatcaa 2160 gacacagcca ttcagcttgg ctattgatgg cagcagtgac acaggaacag caagcatgta 2220 tcctcttgtg gtgcgcatat atgatgtaaa tcgaggtgaa gtggcatctc agttctggca 2280 tatgtgcctg atatctgact gtactgctca aggtattttc aattctgtca gtgatgtatt 2340 tcgagattat gaggttccat gggaaaatgt gattggactt agtcttgaca atgcctctgt 2400 caacatgggc aagcacaatg gcctgtacag acattttgaa agaaaaaatg caagtgttta 2460 cacttttgga tgcccatgcc acattgtgca caacacagcc agctatggag ccaaggcata 2520 tgcggaggct gcagggtttg accttggtga tttcttggtg gacatctact attacttcga 2580 caacagcacc aagcgtcagg cctccctgaa agatttttgt gacttctgtg accaagatta 2640 caggaagatc ctgaaatatg gggccacacg gtggttaagc agggagttgt gcgtatcccg 2700 ggtgctaaaa cagtacccta gcctgcagag ttattttgct agtcagcccg aattaagatc 2760 agacaagcga ttgtgtaggc tgagggaata ctttgctgac cctaaaacag agattcatct 2820 catgtttttt cagtcaattc tgccagtctt cagtgagctc aacaagcagt tgcaggggga 2880 agaacctcag attcactgct tgcggcaagg cttatccgat ttcctgcaaa agctccttgg 2940 aaggtgcatg ctggcaacat cgtacaagga caaggacctg gatgatagag ctagcatgaa 3000 cttcgagaat gaagacttat tcctatcacc aaaagatgtc atgattggct tcaccacaag 3060 gactaccatg cagaagcata atcttttgcc agaagaggag aagaaacttg cacaagattg 3120 tcgaaaattc atgacagctt cattacagta tgcatgcaaa aattttccat tgaaagatcc 3180 tttgctcaaa catgctgagt ttctgaactt tcatgaacgt gcaaaccaaa catttgacag 3240 tgttcaattt ttcatttcta aatttcccac actggaagct gccatggaag gaaaaatgga 3300 tgctctgtat gatgagtttt gtgcgtatca ggctctgggc aatgacagtc agctttctga 3360 tctttcacgt atcgatcaca tatggatgta tctgggaaaa atggagggca aaaatggcct 3420 caggtttggt ctgctggcac aagtggcaca gtatgtcctt gttctgcctc acagcaatgc 3480 tgctgaagag cgtatttttt caactgttga gaaaaataaa actaaatata gaggcagctt 3540 gtcaaataca acaacactgc cctccatcct tacttgcaag accaattatt tcaaccacac 3600 ccattgctat atgtttaagc caactaaatc tgtgcttcag aaggcaaaaa aagctgccac 3660 aacctacaat gctgaccata gcagtacttc taagtgaaat tttatgagaa ctggtttatt 3720 tgttaatttg actgttcatc taggtctata aactgcatat ttttaggtat tcatctatta 3780 caaaactgta cagtcatgta tatatgtatg tgtaaaatac tatataatta taatattatg 3840 agtcaattca gtacctttaa caatctctag attaaatgct cagaacaaga attagtttga 3900 catctacatg taattttata taaaataaat gtattatata tcctggcaga tgtagacttg 3960 agattacagt acacaaattt gtacacaaat ttgtgtactt attattgtgt tgaagtagac 4020 tgctgaaata atgattttgt gaaattttca aaagtaatat attttattat aattcagtta 4080 ttatagataa aatattgatt ttaagtatta tcagttcaaa taactactgt tatatatata 4140 taaatatata tatctttaaa attcatataa atattctaaa gaatctaaat atttcatgga 4200 cgctttaatt tttttgtttt ttaaaattac atatcatata tggatctatt gtaaacttgt 4260 taataaactg tattttggca catatgacat cttatgattt tgcctttcag aatgcatcag 4320 aagtcatgtt ttcacaacta tttttcaaaa attttctggg ggggatcccc cagacccccc 4380 ctgtgggagg gggatacccc ctcccacacc ctccccgcgc tccgcgcacc tctgcaaagc 4440 gccagaggtg ctgctccgcg cctcgccggc tacgccgtcg agctcggctg cttcgcagcc 4500 cagctaccgc tccgatgtga ccagcacagc cttttataaa acttgggacc tatg 4554 // ID Gypsy-12-LTR_NV repbase; DNA; NEM; 176 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-12_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12-I_NV; KW Gypsy-12-LTR_NV; Gypsy-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-176 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-176 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-12_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 456-456 (2007). XX DR [2] (Consensus) XX SQ Sequence 176 BP; 41 A; 32 C; 33 G; 70 T; 0 other; tgttataata ttatttgttt tgggccccct gtggcccctt atttatctta tgggcccccc 60 gaggataggg ctcctcgttg tcttatgttg tagttttttc actcggtaga tttgattttg 120 tagagcttta ttgtaaaaaa aacaaccgaa ttttgaagta aacacctttt attaca 176 // ID BEL-11-I_NV repbase; DNA; NEM; 5353 BP. XX AC . XX DT 21-MAR-2011 (Rel. 16.03, Created) DT 21-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Internal portion of the BEL-10_NV autonomous LTR Retrotransposon DE - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP254; KW BEL-11_NV; BEL-11-LTR_NV; BEL-11-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-212 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-212 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5353 RA Kapitonov V. and Jurka J.; RT "A family of BEL-11_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (21-MAR-2011). XX DR [3] (Consensus) XX FH Key Location/Qualifiers FT CDS 28..5331 FT /product="BEL-11-I_NV_1p" FT /note="protease, reverse transcriptase, RNase H, FT and integrase domains." FT /translation="MATIASKRKTRAGHRAFVTRFMAEGCEEKSAVEVLRD FT RLQILKTLDDEVLELMSRDDVFTEEDVEEETVNAGKIETTIREKILALEAA FT EETSRRNSVASEIQSEAAASSAQDQETRARLPKLRLKNFAGSVGEWQEFWD FT GFESSIHSNPRLATVDKFNYLRSLLVGPARGAVAGFALTAANYQSAIDLLK FT RRYGQTEKIKRAHINEMMKVRGVTSEKDAAGLRRFYDAVETKHRGLQALGV FT EAAQYESILVPALLEKIPEAVRLSITRGKSHENWVMEEMLAELLEEVELRE FT RCQPDERPAPQEQNRGKQGPNSASALTTAGTRKRCAFCLGEHQEDECSKVK FT LPKDRINILRKFGRCFICLKKGHRSNECFNKDGCSDCRGRHHVSICYERER FT VNENVTNGASVTETSVHVCTGGLVALQTAQGIIRGERSVKARVLFDAGSHK FT SFITSKTVKAAGLKGVRKEWLEISAFGQKGKDSGLRDVFSFEIHPIRGGES FT VKIEAYEVPSITQIRNVHVEQRKLEYAHLQNLWFSDVNRKDEVLEIEILVG FT SDSLWQFQNGRTIRGARDEPVAIQTTLGWVLSGPLQGDEGGVSNVNLIGRD FT LSSSNVESEVVKLWDYETLGIREENEVHESLKDGIVFTGERYRVKLPWKEG FT IECLPSNYGNSXTRLRGQLARLQKEPDIRAEYDAIIKQQVESGIIERVYEL FT ESANKVHYLPHHAVVRKEAKTTKVRIVYDASSKERKRGVCLNDCLHVGPAL FT TPLLYEILIRFRQRKIALVGDIEKAFLNIEVDEADRDCLRFLWVNDVEAKE FT AAPIIYRFCRVVFGVNCSPFLLNATLRYHLESFAKEEPEFVRVMKDSFYVD FT DLVTGAESADKALELFEKARARMATGGFKLRKWLSNDEKVTAEIRERENDV FT TLCDRETNVTVRDSVDTDSDEATYAKAMLGVKDEMSVVDKVLGHEWNCKND FT EFRFDLERLADKAAGVNVTKRNTLKVMASMYDPLGIVSPIMVSMKVLFQEL FT CVEKLDWDEELTGERKKRWLSWLDDLKRVKEVRIARCVYGGSGAEVTYSLH FT GFGDASKKAYCAVIYCVTELYGAYHVELLTSKTRVAPLKEQTIPRLELMSG FT RVLAQLMAPVVNAISGEVELSGRRCWLDSKTALCWINNLGGWKQFVKQRVN FT EILRLTTKADWGHCPGIENPADIGSRGALASELVNNQLWSKGPQWLARPES FT EWPVTEKIVETPEKCSEECKRGTAALTNVTKQSVASVVDIERYSSLTRLLR FT VTAWVGRFVNNLRLGLKGETIVTGALTIDELTSAELLWVKAAQSELRSAKH FT YKDLVKDLGVQECDGVLRCAGRLGNSQLENDTKNPILLPRGHKFTRLVMDS FT CHARVCHSGVRATLAELRARFWVPKGRQAVKKSVSECVVCKRVQGRPYDKP FT PIAALPEFRVSEAPPFSKTGVDFAGPVYIKGHEGMKKMYIALFTCSVTRAL FT HLELTEDLSTRSFLNCLRRFCARRGTPALIVSDNAKTFKSAAKFLNELYDQ FT PDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKRCLKKVLGNARLNCD FT EMQTTLVELEGTLNSRPLTYEYDEVGAEMLTPSHLLFGRRLLNLPDELRDD FT EDEEVNGMMKRFRYLAKKRRHFWNRWFKEYLVDLREQHKAVNSGRKVAEVG FT DVVLLFDETLKRSEWKMAVVEELIQGPDGQVRGAVIRVLSRGKPIRMKRPV FT QRLYPLEVKCAEGAGVSKTVEGIEVPNERPKRAAALDAQWRTRSMIDS" XX SQ Sequence 5353 BP; 1507 A; 913 C; 1701 G; 1231 T; 1 other; tttggtccga tcgagccgga taggagaatg gcgactatag catcaaagag gaaaaccaga 60 gcgggacaca gagccttcgt gacgaggttt atggctgaag ggtgcgagga aaagagtgcg 120 gtcgaagtac tgagagaccg gctacagatc ctcaagaccc tcgacgatga agtgcttgag 180 ttgatgtcca gagatgatgt attcaccgaa gaagatgtag aagaagagac ggtgaacgca 240 ggaaagatag aaacgaccat aagagaaaag atattggcgc tcgaggcagc cgaagagacg 300 agccgccgaa acagcgtagc aagtgagatt cagagtgaag ccgccgcgag cagtgcgcaa 360 gaccaagaga caagagcccg attgcctaag ctgaggctaa agaactttgc tgggagtgtc 420 ggtgagtggc aggagttttg ggatggattc gagagtagta tccattccaa tcctcgcctg 480 gccaccgtcg ataagttcaa ttatttgaga agtctgctcg tgggaccggc gcggggagcg 540 gtggcaggat tcgccctgac ggcggcaaat taccagtcgg ctatcgatct cctgaagagg 600 cgttacggcc aaacagaaaa gataaagagg gcacacataa atgagatgat gaaggtgcgg 660 ggagtcacga gcgagaaaga cgcggctggt cttcgccgat tttacgacgc ggtggagacc 720 aagcaccgag ggctgcaggc gctgggagtg gaggcggccc agtatgaaag catactagtg 780 ccggccttgt tagaaaaaat cccagaggcg gtgcggctct cgataacgag aggaaagagc 840 cacgagaact gggtgatgga agagatgcta gcggagctac tcgaggaggt cgagctacgg 900 gagcgatgcc agccagacga gagacccgca ccccaagagc agaaccgagg gaagcaaggc 960 ccaaactcag cgagcgcctt gacgacggca gggaccagaa aaagatgcgc cttctgcctc 1020 ggggaacacc aagaggacga atgctccaaa gtaaagctgc caaaggatag aataaatata 1080 ttgcgtaagt ttggaagatg ttttatttgc ctaaaaaagg gacataggtc caacgaatgt 1140 tttaataagg atgggtgtag cgattgtcgt gggaggcacc acgtttcgat ttgttacgag 1200 agagagagag ttaatgagaa cgtgacgaat ggggctagcg tgacggaaac tagcgtccat 1260 gtatgtactg gggggctggt cgcgttacag accgcccagg gaattatacg gggggagaga 1320 agcgtaaaag cgagagtact ttttgatgca ggtagccata aatcctttat tactagcaaa 1380 acggtgaaag cagcagggtt aaaaggggtt aggaaggaat ggctagaaat aagtgctttt 1440 gggcaaaagg gaaaagatag tggattacgt gacgtgtttt cctttgaaat ccatcccata 1500 agaggtggcg aaagtgtcaa gatagaagcg tatgaagttc ccagtatcac gcaaattaga 1560 aacgtgcatg tcgaacaaag aaagcttgaa tacgcacatc tccaaaattt gtggttttcg 1620 gatgtgaata gaaaggacga agtccttgaa atcgaaattc tcgtggggag cgatagtttg 1680 tggcaatttc agaacggcag aaccattcga ggggcaaggg atgagccggt tgctattcag 1740 acaacactgg gctgggtttt gtcgggtccc ctgcaaggag atgaaggagg tgtcagcaat 1800 gttaatttga tcggtcgtga tttgtcgagt tcgaatgttg aaagtgaggt tgtaaaattg 1860 tgggactacg agactttggg tattcgcgaa gagaatgaag ttcacgaatc attgaaagac 1920 ggaattgttt ttacgggtga gcggtatcga gtaaaattgc cttggaagga aggcatagag 1980 tgtttaccga gtaattacgg taatagtktc acgcgattaa gaggtcaatt ggccaggctt 2040 caaaaggagc cagatattcg tgccgaatat gatgcgatca taaagcaaca agtcgagtca 2100 ggaataatag agagagttta cgagctcgag agcgcgaata aggtccatta tttgccgcat 2160 catgctgtag ttcgcaagga agcaaaaact actaaagtga gaattgtgta tgacgcgtca 2220 tcgaaagagc gaaagagagg cgtttgttta aacgactgtt tgcacgtagg acctgctttg 2280 actccgctat tatatgaaat tctaatccgt tttcgccaaa gaaagatcgc gcttgtcggc 2340 gacattgaaa aggcgtttct gaatatcgaa gtagatgaag ccgacagaga ttgtttgaga 2400 tttctttggg taaatgacgt tgaggcaaaa gaagccgcgc caataattta cagattttgc 2460 cgagttgttt ttggagtaaa ttgttcgcct tttctgttga atgccacttt gcgttatcat 2520 ttagaaagtt ttgccaagga agagccggaa ttcgtgcgag taatgaagga tagtttttac 2580 gttgatgatt tggtgacagg cgcagagtcg gcagataagg cacttgagtt atttgagaaa 2640 gcacgtgcgc ggatggcgac aggggggttt aaactgcgga agtggctaag caatgacgag 2700 aaagtgacag cggaaatacg agagcgtgag aatgacgtga cgttgtgtga cagagagacc 2760 aacgtgacag ttcgtgacag tgtagatact gatagtgacg aagcgacgta cgcaaaggcg 2820 atgcttggag ttaaggatga aatgtcggtt gtagacaagg tactagggca cgagtggaat 2880 tgtaagaatg acgagtttag gttcgactta gagaggcttg cggataaggc cgcaggtgtg 2940 aatgtgacaa agcggaacac cttgaaagtg atggcgagta tgtatgatcc attgggtatt 3000 gttagtccca tcatggtaag tatgaaagtg ctttttcagg aattgtgtgt cgagaagtta 3060 gattgggacg aagagttgac tggagaaagg aagaagcgtt ggttaagttg gttggatgat 3120 ttgaaacgcg tgaaggaagt tagaatagcg cgttgtgtgt atggcgggag tggagcggaa 3180 gtgacgtatt cgcttcatgg gtttggtgac gccagtaaga aggcttactg cgcggtgatt 3240 tattgcgtta ccgagttgta tggggcctat cacgttgaac tgcttacatc caaaacacga 3300 gttgctccgt tgaaggaaca gacaataccg cgcctagagt tgatgtccgg gagagtgttg 3360 gcgcagttaa tggcgccggt ggtgaatgcg attagtggtg aggttgagct gagtgggaga 3420 cgttgttggc ttgacagtaa aactgcgctg tgctggataa ataatctggg cggatggaag 3480 cagtttgtga aacagagagt gaatgagatt cttaggctga cgaccaaggc ggactggggc 3540 cattgtccag ggatagagaa ccctgctgat atcggttcgc gcggtgcgtt ggcatcagaa 3600 ctggtgaata atcagctgtg gagcaagggc ccacagtggt tggctagacc agagagtgag 3660 tggccggtga ctgaaaagat tgtagagaca ccggagaagt gttctgaaga gtgcaagcga 3720 gggacagccg cgcttactaa cgtgacgaaa cagagtgttg cgagtgtggt agacatagag 3780 cgctacagta gtttgacccg acttttacga gtgacagcgt gggtaggacg atttgtgaac 3840 aaccttaggt taggactgaa gggtgagact attgtgactg gagcgctgac aattgacgag 3900 ttgacgagtg ccgagttact gtgggtgaag gctgctcaga gtgaattgag atcggcaaaa 3960 cactacaagg atttggtaaa agatcttgga gtccaggagt gtgatggggt tcttaggtgc 4020 gcagggaggc tcgggaactc ccaactagag aacgatacaa agaatccgat tcttttgccc 4080 aggggtcata agttcactag gcttgtcatg gatagttgtc atgcgagagt ttgtcatagc 4140 ggtgttcgag ctaccttggc agaactcaga gcgcgatttt gggtgcctaa gggaaggcag 4200 gctgtaaaga agagtgttag tgagtgtgtg gtgtgcaaac gggttcaagg gaggccgtac 4260 gacaaacctc cgatagctgc gttacctgag tttcgagttt cggaagcacc gccgttttct 4320 aagacgggcg tagattttgc gggaccagtg tacatcaaag gccacgaggg catgaagaag 4380 atgtatattg ccttgtttac gtgttcggtt acgcgagcgt tacatttaga gctgacggaa 4440 gatttatcga ctagatcgtt tttgaattgt ttacgtagat tttgtgcaag acgcgggacg 4500 cccgcattga tagtttcaga taacgcaaag acattcaaat ccgcagcaaa gtttttgaat 4560 gaattgtacg atcaaccgga tattagaacg tattgtgagg agaatcgaat ccagtggaag 4620 ttcaatctcg agagagctcc ctggtgggga ggtttctttg agagaatggt tggaacagtg 4680 aagcgttgtt tgaagaaggt gttgggcaat gcaaggttga attgtgacga gatgcagacg 4740 accttggtag agttggaagg gactttgaat tcgcggccat tgacgtatga atatgatgag 4800 gtcggtgcag agatgctgac accgtcgcat ttgttgttcg gacggagatt gttaaatttg 4860 cctgacgagt tacgagatga cgaggacgag gaagtgaatg ggatgatgaa aaggttcagg 4920 tacctagcga agaaacggag acatttctgg aaccggtggt tcaaggaata cctggtagat 4980 ttgcgcgagc agcataaggc tgtgaatagt ggacgtaagg ttgcagaggt cggtgatgtt 5040 gtgttgttgt ttgatgagac attgaagcga agtgagtgga agatggccgt tgtagaggag 5100 ttgattcaag gcccggacgg gcaggttaga ggtgctgtaa tcagagtgtt gtcccggggg 5160 aagcccatta ggatgaagcg accagttcaa cgcttgtacc ccttagaagt gaaatgtgcc 5220 gagggtgcgg gggtaagcaa aactgtggag ggaatagagg ttcctaacga aaggcctaaa 5280 cgcgctgcag cgttagacgc gcagtggcga actcgttcga tgattgactc gtagacgagt 5340 caagggggga gtg 5353 // ID Mariner-N4_NV repbase; DNA; NEM; 1340 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-N4_NV non-autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Mariner-N4_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1340 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1340 RA Kapitonov V.V. and Jurka J.; RT "Mariner-N4_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 620-620 (2007). XX DR [2] (Consensus) XX SQ Sequence 1340 BP; 458 A; 229 C; 227 G; 426 T; 0 other; caccttttgc ttttcattac cgagaaatac gcattcattt tagccaaaat tacaaacatt 60 tacgccgatg tactgtcatt taagcgaaag taaaatcatt tgaactaaaa ggaaatacat 120 taacgaactt tacataattg agtgcacaca attgcatttt cttaacattc atttacacta 180 ttcgacaacc aggaatgaaa aatctatttt catttgcgcg ttgatacata acaatagcac 240 aaataaaata tcaataatac gagaactcgc aatcaataca gtgaacgaaa tattcattaa 300 catttttatt acagcaagtg caaacaatag tattttgtga aagtcatttg cgtgcttctt 360 ataaacgtta gcgcctccgt acaaacaata agccctttat gacaaacaat atcctaaaat 420 aattattcaa ttacttctcg tttatttgtg cccttataat gcacatacat tcaaaataaa 480 tgatactagc actaaaaatt aatattcgat catttcgccg ttttaacccg ggcccaaata 540 cagaaacaaa aatgttgccg ccctacagtc cgtttcttaa ccctgtagag caggcaataa 600 gttgtttgaa agcagcgata aaggcagata tttcacggcc tcaaatacag gcagaaatga 660 acaacaggga tgaagcaagg aacagaggag taccattagg tatttatcgc acaaatttgt 720 tgctggaagc gcttcaacga aacatcaaca ccatcacaca gccaaaatgt gccgaatggt 780 ataggttcat gcaaacctat ctaccacgct gcctcaacgg cgaaatgatc gaagggtgat 840 ttttgagtac tagtatcatt tattttgcat gtatgtgcat tattagggca caaataaacg 900 ataagtaatt gaataattat tttaggatat tgtttgtcat aaagggctta ttgtttgtac 960 ggaggcgcta acgtttgtaa gaagcacgca aatgactttc acaaaatact attgtttgca 1020 cttgctgtaa taaaaatgtt aatgaatatt tcgttcactg tattgattgc gagttctcgt 1080 attattgata ttttgtttgt gttattgtta tgtatcaacg cgcaaatgaa aatagatttt 1140 ttattcctgg ttgtcgaata gtgtaaatga atgtgaagaa aatgcaattg tgtgcactca 1200 attatgtaaa gttcgttaat gtatttcctt ttagttcgaa tgattttact ttcgcttaaa 1260 tgacagtaca tcggcgtaaa tgtttgtaat tttggctaaa atgaatgcgt atttctcggt 1320 aatgaaaagc aaaaggtgtc 1340 // ID DNA-TA-13_NV repbase; DNA; NEM; 2624 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-13_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2624 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2624 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2624 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-13_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 2624 BP; 806 A; 531 C; 497 G; 785 T; 5 other; cagtaccgct ctcgaacatg tggacatatg ttcgcgaaat tgttcgcgaa attcgcgaac 60 accgttcgcg aaattcgcga acaacgttcg cgaacagacc gggacaaacc gattgacaaa 120 cgggaactcg taccgtgtaa ccgaagactt acagtactga tactcactta aaatacatac 180 aggagttctg caagcgattc aaataaattg ttcgtgtaaa agtcagctga gagctatggt 240 tatcgttaaa atcagaaaca acaaattcag ttatagtctg atatgccttc agttcaatta 300 tttgtagacg atcaagacaa gacactttca agtttgagaa ataaagacga taaagatggc 360 ggatgaaagc caaagcatgc gaaggattcg atcgtggatt tacgagggca gacacaggca 420 aaaaagttag ttagtttatt ctcaaaagct tgcctcgaag agggaaggaa tgtcgatcgc 480 ttgatattct tcgaagattg tcgaatgtga caactgctag cgaatacttt tgaacagcgg 540 gaagccattt atttaacaaa tacttgtatt acacacggga taattaattt ggggaaggaa 600 tgccgatcgc ttgatattct tcgatgattt tcgaatgtgt gaaaactgct agcgaagaat 660 tttgaaattc tataattgac aaatacttgt aataaacacg ggagaaggaa tgccgatcgc 720 ttgatatcct tcgaagattt tcgaatgtgt gaaaactgct agcgaagaat tttgaaattc 780 tatttgacaa atacttgtaa taaacacggg agaaggaatg ccgatcgctt gatatccttc 840 gaagattttc gaatgtgtga aaactgctag cgaagaattt tgaaattcta tttgacaaat 900 acttataata aacacgggag aaggaatgcc gatcgcttga tatccttcga agattttcga 960 atgtgtgaaa actgctagcg aagaattttg aaattctata aatacttgta ataaacacgg 1020 gagaaggaat accgattgct tgatatcctt cgaagatttt cgaatgtgtg aaaactgcta 1080 gcgaagaatt ttgaaattct atttgacaaa tacttgtaat ataaacggga gaaggaatgc 1140 tgatcgcttg atatgaagat tttcgaatga aaactggcaa gtttgacatc ggaaagccat 1200 ctctttaaca aagacttgta ttagacacgg gagaataagt ttgaggtggg aatgccgatc 1260 gcttgatatt ctacaaaacc cgaaaagaag acatttatag tagagcatgt tgtcgctgac 1320 tcatgtattc aacacaaacg actactacta acagttttca cacattcgra aatcttcgaa 1380 gaatatcaag cgatcggcat tccttcctca aactaattct ccygtgtcta atacaagtyt 1440 ttgtcaaata aatggcttcc cactgttcaa aaggattcgc tagcagtttt cacacattcg 1500 aaaatcttcg aataatatca agcgatcgat cggcattcct tcctcaaact aattctcctg 1560 tgtttattrc atgtctttgt caaataaatg gcttcccgct gttattaagt ctacgctagc 1620 agttttcaca catttcgaaa atcttcgaag aatatcaagc gatcggcatt ccctcctcaa 1680 actaattctc ccgtgtttag tacaagtctt tgctttgtca aataaatggc ttcccgcttt 1740 tcaaaagtat tcgctagcag ttttcacaca ttcgacaatc ttcgaagaat atcaagagat 1800 cggcattccc tcctcaaact aattctcatg tgtttattac atgtctttgt caaataaatg 1860 gcttcccgct gttattaagt cttcgctagc agttttcaca catttcgaaa atcttcgaat 1920 aatatcaagc gatcgatcgg cattccttcc tcaaactaat tctcctgtgt ttattgcatg 1980 tctttgtcaa ataaatggct tcccgctgtt attaagtcta cgctagcagt tttcacacat 2040 ttcgaaaatc ttcgaagaaa atcaagcgat cggcattccc tcctcaaact aattctcccg 2100 tgtttagtac aagtctttgc tttgtcaaat aaatggcttc ccgcttttca aagtattcgc 2160 tagcagttaa cacacattcg acaatcttcg aagaatatca agcgatcggc attccctcct 2220 caaactaatt ctcccgtgtt tagtacaagt ctttgctttg tcaaataaat ggcttcccgc 2280 tgtttaaaag tattcgctag cagttaacac acattcgaaa atcttcaagg aatatcaagc 2340 gatcgggcat tcattcccca aactaattct cctgtgtcta atacaagtct ttgtcaaata 2400 aatggcttct cgctgttcca gctgttatta agccctggat cacacgttac cgttcgtcaa 2460 accgtttatt ttgcatctgt tcgcgaacag cgtgttcgcg aacagtctat atgttcgcga 2520 atttcgcgaa cgttgttcgc gaatttcgca aacgttcgcg aatttcgcga acgytgttcg 2580 cgaaagtttc gcgaacagtg tccctatgtt cgtgagcggt actg 2624 // ID Harbinger-N4_NV repbase; DNA; NEM; 822 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP11; Harbinger-N4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-822 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 162-162 (2007). XX DR [1] (Consensus) XX CC Harbinger-N4_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. This family is relatively CC old; its copies are ~7% divergent from the consensus sequence. CC The Harbinger-N4_NV transposon is characterized by 30-bp CC imperfect TIRs and TWA target site duplications. XX SQ Sequence 822 BP; 200 A; 176 C; 175 G; 270 T; 1 other; gggaagggtc attatttaac gggggggagg gctgctatgt ttggggggag ggttgctatt 60 ttttgagcgt cgatttgggg gagggcctca atttttgata cagggtttag gggagggcct 120 tattttttga acaggtattc tgatcaattt ccgagcctcc taaaagtctg gaatttcaaa 180 atttttttgg ggggagaacc ccagaccccc tacaaaatag ataaatgaat gtgatgcgcc 240 ttctgcttgc actttcatga ctttcgtttg gctggcgttg aaaatcatta tcccctaaag 300 tgtggcctct actattttta tcttttgcag ttttggtttt attaacttcc atcaatgaat 360 ttacgaattt cgattcatgt caaagtcccc ccctactaac ttttcagatt ggtggtatga 420 aaacatattt aaataagatt tcagttggga aggagctaat gatgctgttt tctatttagg 480 ttttaacaat aattagcatt tcatatattt gaaaatggca aaattttcac gggggagcat 540 gcccccagac ccccctatac aatattattt acacccctga aatcaacttt tctcctggct 600 tggtggtgtt taaggccagc tttgccgccc ctttatgggc atgtctaagt cagtgccccc 660 cccccctccc cacacacaca cacacaataa ttttagttct tttttgttct gggggagggc 720 ctaatttttg gtcgcctttt tkggggaggg tcgcaatttt tgaaccagaa aaaaattcaa 780 cttagcagcc ctcccccccc ccgataaata atgacctttc cc 822 // ID DIRS-36_NV repbase; DNA; NEM; 2487 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-36_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-36_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2487 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2487 RA Kapitonov V.V. and Jurka J.; RT "DIRS-36_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 432-432 (2007). XX DR [2] (Consensus) XX SQ Sequence 2487 BP; 640 A; 540 C; 524 G; 783 T; 0 other; gtgcctagag gctcttgttt taagccaaaa taatctcatg cagggcgcaa tgcctcttcc 60 cacaccggta aagctagttt aagaatatgg ctttctggtt atgatgcaga gaaggcccgg 120 tttttgtttg acggttttcg tatccactca aacatgggga atgagagttt acactcccct 180 aatcttttgt cagccaagca aattcatcac attgtccgag agaaactgaa tcaagaggta 240 aaagctcaaa gaatagcagg cccctttgat agtccacctt tcggcaattt acaggtttac 300 ctttaggact tgtctccggg ggaatataga atgattcacc acctttcata ccccaaaggg 360 gggttcggta aatgatggga ttgaaccaca attttttaca gtctcttatg ctattattga 420 tgcaatctgg ggctggatcg tttatggcca agacggatgt aaaacatgcc tttcgcatca 480 tccccattca ccccgaagac tatcattttc ttggtatgca atgggaaggg tccttttatt 540 atgacaaatg tattccaatg gggttgtcaa gttcctgtag aaccttcgag gctctcagca 600 ctatttgagt ggatagtcag aaataagctc catattgaac acattataca tctccttgat 660 gacttttgta tttgtgcatc tacaagggaa atttgtgagc atagtcttaa atgctcctta 720 gaactctgta gtcacccggg catccctatg gcaccaaact gttggtccag cttctgtttt 780 gacttttgat tgaattagat acagtgaact cggaagcgcg tttgcccttg ataaactaca 840 aaattgtctg gaattggttg gggcttatca acgccgaaaa aagcttacct tacttgagtt 900 gaaatcgttg attaaatttt gcttgttcag ttgttgtaac tggtaggact ttccttcgcc 960 gcctgatcga cctgacctca ggtgaaactg ggccatcaca ttttgtccgc attacgatgg 1020 agacaaaaaa ggatctatct gcatggggtc attttttgca acaatttaat ggtaggtcat 1080 tttgttctgg atgatcgttg ggaagataac caatcccttc agctttttac tgattcagct 1140 ggggctctgg gttatggagc catttttgaa agtcactggt gttatgggga gtggccaagt 1200 tcctggaagg gtaaaaatat tgctctttta gaattttatc ctatagtttc aagtctaggt 1260 atttgggggg aatatatgcg taataagtgt attacatttt acacagacaa tgcatcttta 1320 atctctgtaa tcaatccgtg cacctgcaag gataagttcc tgatggtttt tgtacggaaa 1380 ttggttctta tttgccttca gaacaacatt atgtttaaga ccatatccca ggggttaaaa 1440 attaccttgc cgatgcattg tatcgcttac agattcagaa gtttagagca ctggcccaga 1500 cacactacga ttccaggcaa actcgggggc cggatggact cctgccgcag atttgggccg 1560 tatagttcat agtcttttgt cagcgagtct ggaaaaatct acagtaccca cataccaaag 1620 agcttggcgt ttgttgcgcc aattctcagt tgaggttttc tccatacttc tgtgacactt 1680 ccagttgacc cagcaaccat tgcccttttc atagcctatt tagttgaccg tacttatgca 1740 ccggccacgg ttgccactta cacggcagct atcgggtatt accatcgtct cgcaggacta 1800 actgatccta ctaaggttcc tttcattatc gaaatgttaa agggttatac caagctcggt 1860 gggaggctag atgctcgcct atccatcacg cttccagttt gaacgagaat tacacaatct 1920 gttactacca tatgtagttc acagtacact gttagacttt ttactgccat gtgctcactg 1980 gcattctttg ccctcttgag agtcggtgaa atgacttcat ccaccgggcc ctctcagcat 2040 attctcacgc tgaatcaaat tgagccgatt tctgagaatg atggtcaggc taaggcactt 2100 aaagttacct tttatgactt caagcatcat tacaatagta gtccacattc ctttcttgtt 2160 cagcgacagc ctgaaagttg tcccgtccag ttgttgaatt acttatcagt tcggggttcc 2220 agtccaattc agttcgttca taatgacaac actatattct ctgacctcct tacccagtgt 2280 atcaaggctt gtaatcttaa tccttgcagg tataaaggac acagttttcg catcggagga 2340 gcaacatttg ctgcccagca gggcctatca aatacccaaa tccggttgtt gggtcgctgg 2400 aaatcggatg cttttaagaa gtccatccgt ttatgttata tatcctcagt ttaattatta 2460 agttaatttc tgtcattttg atcactg 2487 // ID DNA-8-2_NV repbase; DNA; NEM; 434 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-8-2_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 8-bp TSD; KW NVREP286; DNA-8-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-434 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-434 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-434 RA Kapitonov V. and Jurka J.; RT "A family of DNA-8-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 92-96% identical to the consensus. It was reported CC originally as the unclassified NVREP286 DNA transposon [1,2]. The CC lengths of the subterminal poly-G and poly-C at the 5'- and CC 3'-ends, respectively, are highly variable (from 4 to 25 bp). It CC is possible that this transposon, together with unknown CC autonomous relatives, belongs to a novel superfamily of CC cut-and-paste DNA transposons. XX SQ Sequence 434 BP; 98 A; 112 C; 107 G; 117 T; 0 other; cccggggggg gtactccctt atatgggcta tacggggacg tgccgctgga cagggtatgg 60 tttttgacct ctctgtccta aacagggtat acatttcagg cctctctgtc ctgaacaggg 120 tatatatttc aggcctctct gtcctgaaca gggtacataa ttttaagcaa ggctgtccta 180 aacagggtac cgatttggtt gccttgctaa aactcgtaac cgctgatccc gccgccgatc 240 tgattgcctt gcttgctctc acgtgctaac agggtcctaa aattgagggt gttgtcctaa 300 acagggtcct aaaatcaagg gtgttgtcct aaacagggta tggtttttca gaatttttgt 360 cctaaacagg gtcaggtttc aaaaccccca gcggcacccc tatacccaaa cataggctga 420 gtaccccccc cggg 434 // ID Helitron-N4A_NV repbase; DNA; NEM; 3341 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N4A_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N4A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3341 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3341 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3341 RA Kapitonov V. and Jurka J.; RT "A family of Helitron-N4A_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 3341 BP; 1045 A; 567 C; 576 G; 1153 T; 0 other; tagcggagcc agcgcggccg caggccgcgc gcggagctcc ataggtatag aaatatggta 60 tagctatgcg acttggtttt ggtggtcatc gcgcggttac cctgtggtgt cacaatccat 120 ccatccatcc agtcaatcgt gcaactccca ggccccactc gatcttacgc tgttgtgtgt 180 tttttaccgc ctcgctttgt gctgcaaagt tcgtatgttc acagaagaaa ggcagcttga 240 aaatagtatt taatgagaaa ataagcggat tcaaatgggc tgaagttttt gaggaaacat 300 tttgtctgaa gtacgagccg atgtaaaatc ccgcccgtgg cagcagcagc agctaaaaag 360 aagacgaaga ggagaggctc tacactacca ttctatattc attcacgtct atatctatgt 420 aaggagatcc tgagaggaaa aggccttgga ttgatgtctg ttttcagcta taaaaatcat 480 tcacttgtgt tgacgaattc cttgctagca gaaagatcac ggtttacaac aaaaagcgaa 540 cacaaccact aggcgacaaa cataaagcga caaaaaaaac acactgccaa ggtgagtttt 600 tgacgatgat ttgtattgag aatatgacat tttttttcat ttattgttgt gcttttataa 660 tgctcgtttg ttcgcttttt tcccaaaacc aatcgctcaa actaaaacac cgtaccagct 720 ttagtatgac gtcaagatga catatcaatg tcatctatcc ttgttttgat tggctaaaat 780 accatctact tgaattccga ttggcttata attttggcac ttgaatggct tttattcaac 840 tgacaatcgc catgaaaatg ttaaattcgt aaatacttac ttacaagttc tataaattca 900 ggcgtatatt cctcacggta agtaagaatt taacgacaga aatacgtagt agtctagcta 960 ctgtatcaat gacacttagc ttgttcgatt tatacatatg tttttagagt acagatgttt 1020 acaagttttc atttttcccc aacactattc cagattggaa cagccttccg gcacacaccg 1080 ctagtgccag ttcattactt tcatttaaga ccttagtttc gaaatagagc tgtataaatt 1140 attataatgt actgttttag tcttatttat ttatgtacat ttatttatct tggtataatg 1200 caactcagct tacagtaacc gagcattaaa actgagaatt cgtggtctaa caaacaattt 1260 gagcataaca acatcctttg atattcttcg ttctctcttt actttattga cagcgttgag 1320 atatttaatc aaggctgaca aatatcatcc tgtcatatat tgctaaagaa gacctttctt 1380 gtctttatat cctgtgtatt tagtcttttt gaagatacag caactttttc aacattatca 1440 taaatacttt acagttacaa gataattttt tcatcgaaaa taaaaaccaa aaatgcaacc 1500 tatatatttt tttgctcaag cttatattgt ctgcatcttg catactatct aatgtgttta 1560 tttatttttt aattcaaata gttatagaaa attagtaagg ttatataatg ggatgatgaa 1620 aatattaatt tgaaagaaaa acaaataccc aagttaattg ttttcacttt tatttaggta 1680 aaaccaacca aggactacct gagggtcatg attgatgcta aaggctggaa ggcataagaa 1740 taggcaaatg tagccgggat ttcttacttt gatacagcag tataagtgta atagggtttt 1800 tagtgcaaga tgctttgtgt caatgatact gtaaatctgt aaaacatttt ttatcaacct 1860 gaagataatg agaaaagggg aaatgttagg agagtgctca atcaagttgt tgcattactg 1920 ttaaagtttt tatcaaaaat atagtcccag tttatttttt ctctctctat ttgactattt 1980 ttatatgcaa ttgataatta tttgctgttt cccctctgca ccctgaaaaa attaaagtag 2040 gttaggtttg aaactagaca ttttcattta gcactaatca gtaatatcaa gattttttct 2100 tttaatttgc ttcccaagtc aatttgttct cctccatttg attgcattta attttgtagt 2160 agcattagca tgtgtggatc cagctgcagg gtttctataa aaataaaaaa aaaaaacagc 2220 aggccaccat gctaaagggt gggttcacca atatgtaatg catgactgag gtatatattt 2280 gtggatttta atttccttgg tgatggagta tcactagtaa gtggcacctg aagtgtatct 2340 aactatatca ttctatcttt ggaatgctgt ttcatccatt atttgtttct ttgcaagggc 2400 aaagccggtc agaatgtagc tagtgttgat gcagtagtgt acattaatgg aacttctata 2460 aaagggtttt tattagggca aggtacttac ttaataaatt atataaagat aataacaaac 2520 ttgtgctttt tcaataataa atctgtaaag aaaacagttt ttatatcaaa cctaaaggta 2580 atagggaaag gggaaaatgt ttggaaagtg ctcagtcaag ctattattgc atttttgtca 2640 tatatttttt taaagtagat tcacattttt ttcaaataga gtcacatttc tccctttcaa 2700 ctccccattg actttctgtt tatttgttta tttattgctc tctaccccaa acataagtca 2760 atgaacatgg tttggtttga aattaaagaa ctttcagtaa tttagtattt tcctcaattt 2820 agtattttcc tccattgcat tcatttttga gtagctagta tgggtggatc cagggtttct 2880 aaaaacaact ggccaaaggg tgggtgcact aatatgtatt aatttcaaca cattcttctg 2940 aataatcagt tgcagtacat ggaaactaca gtatggcatc taaatctttg gaatgctgtt 3000 acatccttga tatattcttc acaaggtcaa agattgttat tatgctgttt tgataaaaaa 3060 aaaatacgca tagtggaaca aataagaatt gaccattaga cacttgaaaa acattctcat 3120 caactaaggc accttgaact ttgacagcct tttttacacc aaggtttagt actttcatac 3180 tgcatattta atattattga atgagtgctt gcttgatcca tttgaagggg ccaatacaat 3240 tcataattac atggcagtaa aaattgcttt tttaaactca tttaaaaaac attctttcaa 3300 tgctggctcc gcttttaggc agtgcctaaa tctatatatt a 3341 // ID Tx1-1_NV repbase; DNA; NEM; 4996 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Tx1-1_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4996 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4996 RA Kapitonov V.V. and Jurka J.; RT "Tx1-1_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 661-661 (2007). XX DR [2] (Consensus) XX SQ Sequence 4996 BP; 1239 A; 1435 C; 1274 G; 1048 T; 0 other; aaggttagat aagaatagac gagggtcttc tcgtataagc gccctcggcg tgggaaaacc 60 cggattacgt aatcacgtaa acacgtgttt cgttctctgg gaatttccac ggtataacgc 120 ttgatctaga gaaacctgct agcaccaggg cttagcagga ccgcgcccac agcttgggaa 180 cgcctctaga cacgccctga ccacgcccac caaaatggtt cctccaacag aaaacgacat 240 ggacacgccc acggacacgc ccacggacac gcccaaagcc acgcccactg gaaagactat 300 gtcttacagg gaggccgctt tacaacagcg aaaaccaacc gtctttcggt ctttcgcagc 360 cctgcggaca gtacgtctgc gatacgacag cacaccagtc tctgcggcgg aggtcctgcg 420 cgccttcctg gggacagaaa gcgccgacat tgtcggcacc gcccaggtgg tctctggcct 480 agaggtcacc ttcaaaaccg agcagtcagc tgttctcgct gcctctcgag gcctcgacgt 540 cggcggccgc cactaccaac tcgccccagt ctccgtgcgc agaacggcag tctccgtatt 600 tgtgcctgtt gagttcccgg atgacacctt ccgcgacttg atgaccagat acggagacct 660 acactctatt tcgcggcttc atcacaaaga gcccgacctg gctgctttcg aaaatggatg 720 ccgccttgtc ctgtacgaca agttactccg tgacctgcca gcccgcctaa caacaaacgg 780 agcctctctg agcttcaaat atactgggca acctcagagt tgcctaagat gctcagagat 840 aggccacggt gtgaaagaat gcaccaaacc gcgccgacgc cctcatcgcc gtcgtcgaga 900 agaactcacc accgaacagg agcgcatgca gtgcgcgcag gaggaggaga cactcccacc 960 actatcgccg gatctgccgc taccgacaga gacggcctct gacagcgaaa aggaccagga 1020 cgaggcagct gcccccgcaa cagcgcaaga gcacacaatc tccgcggatt cccttatacc 1080 aacagagtcc tccccaaaga ccggcaccga ggaaccctcc ccgaagaccg gagagaaaag 1140 accacccggt cttcacttaa cggactctcc cccgcgaaag gaaagtcgag ctggaagtcg 1200 agctgaaaac gagcgggctt tcgtaaaaga tctcaaatca gacgcccgca gaatcgctgg 1260 agtggactca agctcccgac tggacgcact cgccctcttt ctccagcaca agcacggtga 1320 ctacacgcac caaaagctgc gactcgctgg acacgcagca cagagcgaac tccgcacccg 1380 atgggagaac ctgaaggggg agcagcgtgc taaacagctg tttgacaagc tctaccgcca 1440 acatttccaa cacctctacg agggtaaaga tgtgcatcat taatcttaac ctcatggtta 1500 tgttaaccta tatttgtttc acaatggcgt tctcggtttg cacgattaac gtcaatggca 1560 tccacgaggc gcctaaacgt gaaaaagttt ttagtgcgct tcgcagcatg aactgcgatg 1620 ttgcgttcgt gcaggagacc cacatttcaa ctgccacgga agagcagcat tgggaaaagg 1680 agtggggggg accggcttat tggagctgtg ggtctcctca cgcgcgtggc gtcggagtgc 1740 tgtttaagcc gtcctttaat ttcaagtttg tgagcctcaa acgggatact gagggcaggt 1800 tcctcagcgt cctcattgag gttaacaaaa ctcacttctc tttgaacaac ctttatgctc 1860 cgaatctccc ggcagagaga gtcgcctttt acggaaatct ttggcggctc tctcacccgg 1920 gggtacccgc catcatcgga ggcgatttta attgtgtaag taacttagcc ctagataaat 1980 gggggggtag cgcgcttagc ggtacattag gataccctgc tttacatacc ttccttgaac 2040 ggttccgggt cttagacctc tatcgatcgt actcaccatc gggtacggca gtaacttaca 2100 tcacgcctga tcgcagggta ggaacacgga tcgatcgtat ctacgccccg gaacctttca 2160 tgcagggggg gtcttgtacc gtcaggccat tccctttctc agaccacgca gccgtacatg 2220 cgcgcctcac aatccccgac atcgagccag cagggcgagg tgtatggaaa tttaatgtct 2280 cggtcctgca gaacgaggac tttcgcaaaa gcgttcgcgc cttctggccc tcgtggcagc 2340 agaaacgacc ccagttccca gaccgccggg tctggtggga tttgggaaaa tttcacctaa 2400 agcgtcttgc gatagccgcg tcggtgcgtc tttccaaaga aaagcgacac cacattgccg 2460 ccctagagag ggaataccaa cgcctaaaca cgcgcggtgc tgacgtctct cgcctccgtg 2520 ctataaagca ggagctagaa gacgcacaga cccgcgtgct agaaggggtt aaagtccgct 2580 ctagagcaca atggcttgag gaaggggaaa aacccacccg gtatttcttc ggcctagaga 2640 gcaacaatcg caccaaacac agcatcaccg agcttcacac ctccagcggc cgtacagcct 2700 caaacacctc agacatcttg gctgcggtgc gcgagtttta caccacgctt tacaccgctg 2760 aaacaacaga ccctgaggct caggattcct tgctctctag gctggacgct cgcctttccg 2820 aggaggagag gtcttcactt gaatcccctt tatctgaggc tgattgccgt gaggccctca 2880 cccagatgaa gaggaacaag acccccggag acgacggtct cccagccgag ttctatctcc 2940 gcttctggga tttagtaggg tgtgatctgg tggatacttt aaatagtgga tacgatcata 3000 cccacctctc tgaatcccag acgcggagca tactctcgtt gctctttaaa aagggagata 3060 ggcttctcct caagaactgg cgcccaatct cactacttaa cgtagattac aagattggcg 3120 caaaagcact ggcaaacagg ctgaaacccg tactcgcgtc agttctttct cctgatcaga 3180 catgcggggt gccgggacga agcatcttcg agaacaactt cctaatcagg gatattctcg 3240 actatgccga aactaaacga cttcccggtg ccctcattgc acttgatcag gaaaaagctt 3300 ttgatagagt ggacagatat tttctcgatc gcgttctcga gaaaatgaat ttcgggcctg 3360 tttttaggcg ctggattaag actctgtaca acggcagtaa agcctcggta tgtaataacg 3420 gctggctcac gagcttcttc cccctacagc gcggcgtccg ccaaggttgc ccccttagcc 3480 ccatgctcta ctgcctttgt gcagaggttc tggggaacgc gatcaggaaa gaccctcagg 3540 tcactggtct tcatcttccc cagtcaaaag cgacggttaa aacaactcag tacgccgacg 3600 acacgaccct cctgctgcga gactcttact ctatacgcag ggctttcgcg ctaattggta 3660 catacgaacg cgcttccgga gcaaagctca atgccacgaa atccgaaggt ctctggatcg 3720 gttcctctcg aggatctgac cagactccgg tggatattaa gtggcagaga gacaagctcc 3780 atatccttgg aatctggcac gggtttggag acctgaccga gtttaactgg gcacctcgcg 3840 tagaaaaact cgaaaaaacc ctcaccttgt ggcgcagccg gactctatcc ctgaagggca 3900 aagttctaat aaccaatgta ctcgggatga gcaaactctg gtacacagcc agtgtgctaa 3960 gaatgccccc tcctgtagcc acaaaggtga acaaacttgt ctgggatttt gtctggtctg 4020 gtaagacccc ccaggttagc agagaaaagt gcgtgcaacc gcgagaaaag ggaggcctgg 4080 cggccatcca cattcagtca aaggtgaaat ccctgcagct gaaatggatt gcacaagtgg 4140 ctaaccctga caataacgct ccatgggcaa acctagcgcg ctattggact agccgcaagc 4200 tcggtatccg taaggagtgg aattggctga aaggcaattc cgccccggtc gcggcgcctg 4260 gaaaacgacc cagggtctat gacgatctcc tccaggccat ggcggagatc aagccttggc 4320 tagcttccgc tcccctccga gcgctgaagg ttaaaaacat ctactcggag tttgtagcac 4380 tcctccctaa tccaagcaaa gctcaacaga cgtgggaaga cagactgcga ctgccaggga 4440 ttccctggtt ctcagtctgg cggaacacat acggcgggct gagcacgaat tgggagagcg 4500 acctgctgtg gaagatccgc caccgcgtgg ttcgcacagc gagtttcctc accagccaca 4560 tgcactgcac gttttcgccg aaatgccacc gctgtggcag gaccgagaca ttaaagcacg 4620 tgtttttatc ttgcgacttt gcgacgcggg tttgggactg ggcatttcct atagctgagc 4680 ggattaacgc tactccccta acccgtaatg ttaacaatgt catccttact cttggactat 4740 ccacagctaa gggtgacaag agcaaaacta acttagtggt gtacatcttt aaactcatac 4800 tatggtgtct gtggactgca aggaacactt ctctattcga gaagagacaa gcagaaatag 4860 tcagtgtagc taaatataag atcagagaga ggatagagag ggacgcggcc gtcctcggac 4920 ctcttgccgc gtatagccgc tggggcatca atgatgtcct ctgctgctgg cggggcgagg 4980 ccctctctgt cctcgt 4996 // ID hAT-1N1_NV repbase; DNA; NEM; 458 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone hAT-1N1_NV DNA transposon - consensus. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; hAT-1_NV; hAT-1N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-458 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-458 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-458 RA Kapitonov V. and Jurka J.; RT "hAT-1N1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX CC This family is a deletion derivative of the autonomous hAT-1_NV. XX SQ Sequence 458 BP; 132 A; 105 C; 78 G; 143 T; 0 other; taaggttcgg cgatatatcg aatttatacc gaaatcgcga tatcaaattt tgcgatatcc 60 atatcgcagt accttgcgat ataaataaat taattaatag gctatacaat gcatcaaatt 120 gccgactttt ggctcttttc tctggtttta cgccactaat ttcaatcaaa tatacctcaa 180 aattgtccac agaacgtcca cacaattccg ccatcataat ctagagttgt tatggcaatt 240 ttacttagtt tggtggcact ttccttgccg aaaattgcat ttaacttctc ctgggccgcc 300 atgttggctg ttggggtgtc atgtgacttg aacagccaat cactgtgagg cttacaaaat 360 ggtggcctac tctggctcaa tatcgcacaa tatcgcaata tcgcaaaatc aaagtgcata 420 tcgcatatcg cacatttttc caatatcgcc gaacccta 458 // ID DNA-7-12_NV repbase; DNA; NEM; 622 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-12_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-622 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-622 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-622 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-12_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 622 BP; 192 A; 119 C; 127 G; 184 T; 0 other; catagttagt agaggggact ggttaggaaa cgcggcgaac ttcaaagaga catgttattg 60 ttctcttatt tccgagttat ctgaccatga ccgtgcacaa gtcgagcgta cagtacaaga 120 gattatatgg agtaaacgaa gaatcgttgt tatttgcatc aataccgcac ttcgatcttt 180 agaaaaatct tcagtattga tgcagactcg tacaaacgct actatacttg ccgtgaaagc 240 tcaccgagtt tgtttgatag agctctactc actatagaat tttagccccg ctcggcactt 300 gtaaaaaata tacatggctg tataaaacta actttctagg gctgtagagc tcgggatata 360 atggcgataa aacatgcaaa gtgataaaga caaagattaa aagaaagtga ataaaaatag 420 caaagtttca aataaatcaa taaacgattt gtgcccgaat acgcgtattc ataaatttcg 480 tccatatgtt ttcttgtact gtacgcttgg tttgtgcacg ttcgtgatca cgtgacaggg 540 ttgttcaaca tcagagagcg cctattgttt atgtcctttg aagttcgccg ggtttcctaa 600 ccatctccct ctactaacta tg 622 // ID TE-3_NV repbase; DNA; NEM; 1198 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone TE-3_NV transposable elements - consensus. XX KW Transposable Element; Nonautonomous; TE-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1198 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1198 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1198 RA Kapitonov V. and Jurka J.; RT "A family of TE-3_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC TSDs are not clear; age:89%; contains a 35-bp palindrome at its CC 3'terminus. XX SQ Sequence 1198 BP; 401 A; 227 C; 229 G; 341 T; 0 other; aatcaaaggc tctgtgagcc aactcgtgaa tgcaaattta tttttctagt tattttcttg 60 tgtgcataaa agatatacag gatactgaac aaagcatgaa cacatccaag atgctgagag 120 tacataaaaa tgtccttata ccttttttct tttcgatgtc atgacacacc aagaacagta 180 taattaatta ttattatcat aaaaagaaaa taaataaaaa acaaaaaatg aaaaaaaagc 240 gctatcagtg ggaatcgaac ccgggtcgct gcggtcggag acaagtgtcc gcaccgctag 300 actaacgtgg cattgctgag tcgacttgta actaaaatta gttttaatac tattggtatc 360 gtaccgttcg aaaagctttt gctagcatgt caaatttcag catattcttt ccggaaacaa 420 aataaaatac ccgcaataat tgatcacgct actgtcatac aatgtgtttt atgcatgtta 480 acattctaga aaggcgcaaa atcgttattc gatgaataag cgagggccat gtgtttgtac 540 gagttttgtt tgatatttag tttagctgat tgggaagaat tgtgaaaaat taatttgtgg 600 aaatctatcc tcttctattt tgtccttcta acagaggctt ttttttatta ccctgcaaac 660 agagaccctg ctaacagagg cttttccctt gtgtttctcg gacttaaaag tcgcagtttt 720 ggctagtcgc tctttcagca caaattcaaa caaacaacgc gaaaacccag agacgcgaat 780 cggcaagtac taaaacaaag agaattaaaa gctttgctag cattttactt gttttgtttg 840 caaactaaca gcttgaattg gactgaaccg tagaagatcg attgacgtca gtgacgaagg 900 cgcatgcgca cgctcaaccc acatggaaga cttttctgaa aaaactagct tatatatact 960 ttacggctat acaaagaaat gaccgtagcg gtcacaggtc gatgacaaag cccttttata 1020 gtactaggct ttaaccggaa gttgaacacc ggaagtatac atatgatcta aggattgctg 1080 tgttgctaaa gcacagaaag accacaaaaa gtttacggat gatcgatccg acgatcgagt 1140 gacacagaag tccctccaat aactcgtaaa tgctttgcaa gcattcacga gttaaaaa 1198 // ID Gypsy-15-LTR_NV repbase; DNA; NEM; 821 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-15_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15-I_NV; KW Gypsy-15-LTR_NV; Gypsy-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-821 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-821 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-15_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 460-460 (2007). XX DR [2] (Consensus) XX SQ Sequence 821 BP; 217 A; 167 C; 146 G; 291 T; 0 other; tgttatgata ggttatgtta gaatgaatcc gtattttgct aattgtagta agcaaataga 60 caaagttaag atatttgctc tagctgaaag ggttgttcaa ggttgaaagt attcttgagg 120 cattgttagt ttttgttgat ttagctgaat aggaagttgt tcgtttaatt ataagaatta 180 gtgacataat gacatttatc gggtcgtacc atgttttggg acttatctgt cttcaacttc 240 ccattaagtt ggtaaactta caagtcttct gtttatatag tttcctttag atgtcggacg 300 ttaattgtcg gtatcattag cacagcacgt aggatcgccc acactcaagt aggaggtgct 360 tagctctgca gtgttggcaa tctgattatc tatgctaatc taagtcagca aacatcacac 420 ctacgctact tgagcgacca gttctttccc cttccgttca gtaactttcg attacaagtt 480 acatatttgt ttctccaaag ttaccttttt acctttccta ccgactccct tagtttcatg 540 gcaaaggaca ttcgttttgt atccttaaat tcttttcaaa gctttccttt gttatcgctg 600 attttgccga cagttaatga tatctgatgt aactgtttgc attgtcaagt accgtccaat 660 caccgcactc tgcacacgtg gtcagtgctt gtcaatcaaa cgtactactt gttttgctac 720 aaataggacc acattgtaaa tcctcattac tcttcatcct actgacttca gaataaaggt 780 acgatcccag tcaacagaag tcctcccgtc taatcattac a 821 // ID DNA-4_NV repbase; DNA; NEM; 263 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-4_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-263 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-263 RA Kapitonov V. and Jurka J.; RT "DNA-4_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 403-403 (2008). XX DR [2] (Consensus) XX CC Target site duplications have not been verified (TATA or TA). XX SQ Sequence 263 BP; 86 A; 46 C; 42 G; 89 T; 0 other; tatacaccta tttcaaaata tgttgtcagt gcaaatggca aatggcaatt gtcaaatggc 60 agttctgcta tcaaaaaata ccatggaact cgtcaaattt ctactgaatg taggaaaatg 120 tggataattt ctgcgattat attacttatc atctttattc ttacaaataa ttatacccat 180 aagcagtgat tggtcttaga actgccattt gccaattgcc attcgccatt tgcactgaca 240 acgtttattg aaataggtgt ata 263 // ID DNA-TA-21_NV repbase; DNA; NEM; 518 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-TA-21_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW NVREP52; DNA-TA-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-518 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-518 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-518 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-21_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP52 unclassified CC DNA transposon [1,2]. XX SQ Sequence 518 BP; 163 A; 106 C; 83 G; 166 T; 0 other; cagtggaacc tggattttac gatactggat tttacgataa cctcgatttt acgatggcgt 60 tcctttctcc cggcggaaat acagtgaaat gtataagaaa ttacctcgat ctaacgatat 120 tggatacaac gatattctcg attttacgat acaaatctgt tctcccaagc gtaattttga 180 cctcgataca acgatattac tgattctgtc tatcaacaaa gagagaaaaa ctcaagacac 240 cacacacgta cagtacagtt aatcgatttt tttgacttga cagatcttgt taaatgcaga 300 ttacagtctt acagagagta actgtacagt cttacacaga gtacagttac aatattatta 360 ttttgtaaaa gttgataatt aacccgacct cgctacaacg atattttcaa tggattttcc 420 tttatatcgt aaaatcgagg acctctttgt aacgatacct cgattttacg atacattttc 480 tttctcccga ggcatatcgt aaaatccagg ttccactg 518 // ID Penelope-9_NV repbase; DNA; NEM; 634 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-9_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-9_NV. XX NM Penelope-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-634 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-634 RA Kapitonov V.V. and Jurka J.; RT "Penelope-9_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 639-639 (2007). XX DR [2] (Consensus) XX CC It is only a 3' terminal part of the retrotransposon. XX SQ Sequence 634 BP; 175 A; 125 C; 154 G; 180 T; 0 other; tcttaaaatg gggaacacct ttactagtca tactacggga aagacattcg ttatcaacca 60 tgacctggac tgtaacagtg ataatgttgt ttatttgctt tcgtgtaagg cgtgtggtct 120 acaatatgta ggctctacga caactaagtt ccgggtacgc tttaataacc ataagagtag 180 aatagttacc cacaagataa gatcagtggc tgagagggag accgatgacc tgggtgtaca 240 ggcacttcaa ctcggatgga cataggggat tagcggactt atcggtccag ataattgata 300 gagtccatgg agatgagaga agcttgcggg acagggaggg gcaatgggga tatagactcc 360 aaaccacaac tccgcaaggg cttaatgaga acgacttttt ttatagccaa acccgtcgta 420 ccgggcgcgc gcgcagttaa tctagacatg tttccagaca gggtcttctt atgcgcgcat 480 attacatttc cgttattttg tatttgttat tgttagccgt tatctttatc acgtgtaact 540 acagttgcta gcctcagtca ccctgaggaa ggctgttgta cacagccgaa atatagatgc 600 tgttgatcat aacaaagtgt tttctcttgt tatt 634 // ID Neptune1_Nv repbase; DNA; NEM; 3747 BP. XX AC . XX DT 07-DEC-2006 (Rel. 11.11, Created) DT 07-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE Neptune1_Nv is a Penelope-like retrotransposon. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW retrotransposon; Penelope-like element; reverse transcriptase; KW GIY-YIG endonuclease; Neptune1_Nv. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3747 RA Arkhipova I.R.; RT "Distribution and phylogeny of Penelope-like elements in RT eukaryotes."; RL Systematic Biology 55(6), 875-885 (2006). XX DR [1] (Consensus) XX CC Neptune1_Nv is a Penelope-like element (PLE) from the starlet sea CC anemone, Nematostella vectensis. It belongs to the Neptune group CC of PLEs. Its a single ORF contains regions homologous to reverse CC transcriptases and to GIY-YIG endonucleases. Consensus sequence CC was assembled from trace archives. XX FH Key Location/Qualifiers FT CDS 334..3378 FT /product="Neptune1_Nv_1p" FT /translation="MGIDITAYRVHIGSFPGRHMARSKPKNISTRQRSPTN FT LKCTLHNRPAIFMLFVLPILIAKSMDIETNPGPVTNMFMDSSDPQPLTDNL FT IYPLTPLFNKTKKIQLKLVRFQHHLINFTFYRVHNLLPQPILPRPPIRSHD FT RNFNRQWYFISRNAATKHLKLLTRECNRKIAASSQELLHHRTLLERSCTNN FT AYIFYCRKLDSMALSLKSLLENRRNNKYSRRNLPNPDNDNTSTITPQAAPN FT TNPPPVATPAPQRRRRRRRRRRKNNSVVTLDSTSVINISSTSLSPDETSVL FT ARGLTFCPTPRKIDWSQVNADIYDFNRRMRLAEYFFNEDKPNDNDTLSFDS FT SFNPFRNKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNA FT LTQLNQRQDIIIKPADKGSGTVVMDKDWYINECNRQLNDTKFYTQLDADIT FT NDIQKRVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPG FT RPIISSNSHPTERISEFVDYYLQPLVSKLPSYVKDTNHFLNILLTLSNLPT FT DSLLVTLDVSSLYTNIPHNDGINACHHFLRTCNTNPIPAGTICDLIRMILQ FT MNNFSFNDKHYLQKHGTAMGTRMAPSFACLFLGLFETNALRDAPYKPHTWL FT RYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIKFTSSHSYNNVPFLDVNVSL FT VNSKIETDLYSKPTDKHQHLLFSSCHPHHTKKAIPYSLALRIRRICSTEES FT FNNRCNELTNYLLKRGYKPAFLKRQILRVANISRIDALRPNNNNHKNSRRI FT PFVTTYNPTLPNINNIIRRNYNLLLSSKRCHKVFTEPPLVAFRRSPNLRDI FT LVKAKLPSDRSPTNQPPGAFRCGKNCLTCPYIRTDGLTSYTFFSTGETRPI FT TSHITCNTKNVIYMIQCNRCNLQYIGETKRKLKERFNDHRRTVDSQSRSIP FT THAAEHFLKPNHSASDIELIPIEKIRNNRDSIRKAREATLIARAGTLEPGG FT LNRREETV*" XX SQ Sequence 3747 BP; 1141 A; 1081 C; 534 G; 991 T; 0 other; gtcactcaat tactattttt accttttgtt agttaatcat caatgaactt tgtacatata 60 ctagctatca catgccattg taactcattt ataacctgaa gaaggcaggt attggcctgc 120 cgaaatatcg ttctaaaaaa cataaatctg cgttgttgtc gactttttct tttaaaggtt 180 ttattaaata atcaactgtc gacgcagacc acaaggtccg acgcacacca gcagatagag 240 gctgtccggt ggtttcttcc tacgtttttg taaattcaat ctcaaccacc gatctccaca 300 ttgagatccg gcttctgctt gcaagacttc aacatgggca tcgacatcac tgcctacaga 360 gtacacattg gctcattccc tggtcgccat atggcgcgtt cgaaacctaa gaatatctcc 420 actcgccaac gcagtccaac caacttgaaa tgtacgttac acaatcgtcc cgccattttc 480 atgctgttcg tgttaccaat ccttatcgca aaatcgatgg atatagaaac caaccctgga 540 cctgtcacaa acatgttcat ggactcaagt gaccctcaac ctttaactga taacttgatt 600 tacccattaa ctccgctatt caacaagacc aaaaaaatcc agctgaaact tgtccgcttc 660 cagcaccacc tcatcaactt caccttctat agagtgcaca accttctacc tcaacccatt 720 ctgccccgac caccaataag atctcacgat aggaacttca acagacaatg gtacttcatc 780 tcacgcaacg ccgctaccaa gcacctaaaa ttgttaacaa gagagtgcaa tagaaagatc 840 gccgcatcat ctcaggaact cctccatcac agaacattat tagaaaggtc atgtactaac 900 aacgcttaca tattttactg tcgcaaacta gattccatgg ctctctcgct taaatcgctc 960 ttagaaaacc gccgcaataa caaatattct cgccgtaatc tccctaatcc cgacaacgat 1020 aatacgtcta ctattactcc ccaagccgct cctaatacta acccaccacc ggttgcgaca 1080 ccagcccctc agcgccgacg ccgccgtaga cgaagacgac gtaaaaacaa ctccgttgtt 1140 actcttgaca gcacatcggt aataaacatc tccagcactt ctctatcgcc cgacgaaact 1200 tctgttcttg ctcgcggcct taccttttgc cctacaccac gcaaaatcga ctggtctcaa 1260 gtcaacgctg atatatatga tttcaatcgt aggatgcgac tagctgaata tttctttaat 1320 gaagacaaac ccaatgataa tgatactctc tcttttgaca gctcatttaa ccctttccgt 1380 aacaaaagca cttggactcc ctcctcaggc agggataact cactcgacac cttccttaat 1440 tctgtcaaac tacagataca aaactctaca cttaacaaga ctcgctctaa catcacacct 1500 ggtgaacgta acgctttaac acaactcaac caaagacaag acatcataat caaacccgca 1560 gacaaaggat ccggcacagt cgtaatggac aaagactggt atattaatga atgtaataga 1620 caacttaatg acactaaatt ctacacacaa ttagatgccg acattactaa tgacatacaa 1680 aaacgagtca caacttacat caaccgaatg cacacggacg gaataattaa tcaggacact 1740 aaatcctacc tcacacccaa agactctaaa cctggacggt tttacatact ccctaaaata 1800 cataaacatg gtaatcctgg acgccccatt atttcctcta actcccaccc caccgaacgc 1860 atctcagaat ttgtagacta ctacctccag ccattagtaa gtaaacttcc atcatacgtt 1920 aaagacacta accacttctt aaacatttta ttaacactca gcaacctacc aacagactct 1980 ctcctggtca cactcgacgt ctctagcctc tatactaata ttccacataa tgatggcatc 2040 aacgcttgtc accacttcct tcgcacatgt aacactaacc ccatccctgc tggcactatt 2100 tgtgatttaa tccgcatgat cctccaaatg aacaacttct cctttaatga caaacactac 2160 ctccagaagc atggcaccgc aatgggcaca cgcatggcac cctctttcgc ctgtctcttt 2220 cttggtctat ttgaaaccaa cgctttgcgt gacgccccct acaaacccca tacgtggtta 2280 agatacatcg acgatatttt tgttgtatgg actgagggcc tagacaaatt gaacgctttt 2340 gtagattatc ttaacaatct acatcccacc attaaattta caagctccca ctcctataac 2400 aatgtacctt ttcttgacgt taatgtctcc cttgttaata gtaaaatcga aactgacctc 2460 tactccaaac ctactgacaa acaccaacac cttctttttt catcttgcca tcctcatcac 2520 accaaaaagg ccatccccta tagcctcgcc ctccgtattc gccgcatttg ttctacagaa 2580 gaaagcttta ataaccgctg caatgaactc accaactacc tcctcaagcg tggctataaa 2640 cccgcttttc tcaagagaca aatcctacgc gttgctaaca tttcccgcat tgacgcccta 2700 cgccctaata ataacaacca caaaaactcc cgtcgcatcc cctttgtcac tacctataac 2760 cctacactac ctaacatcaa caacataatc cgtagaaact acaaccttct actctcgtct 2820 aagcgatgcc ataaggtttt cactgagccc cctcttgtcg cctttcgccg ctcacctaac 2880 ctccgcgaca tcctcgttaa agccaagcta ccttccgacc gctctcccac caaccaacct 2940 cccggtgctt tccgttgcgg aaaaaactgc ctaacctgcc cctatattag aaccgatggc 3000 cttacaagct acacattttt ctcaacaggt gaaacacgac ctataacctc ccacataacc 3060 tgcaatacta aaaacgtgat ttatatgatt caatgtaacc gctgtaacct tcaatatatt 3120 ggggaaacta aacgcaaatt aaaagaacgc tttaatgacc accgcagaac tgtagactct 3180 caatctcgat ccataccaac ccacgccgct gaacacttcc taaaacccaa ccactcagct 3240 tctgacatag agctaatacc tattgaaaaa ataagaaata accgcgactc catccgcaaa 3300 gcaagagaag ccacattgat agctcgcgct ggcactcttg aacccggtgg cctcaaccgg 3360 cgtgaagaaa ccgtttagct acttagtaat ccacaccacc ctatttacca tcttccataa 3420 gtcactaaat tactattttt accttttgtt agttaatcat caatgaactt tgtactttgt 3480 cactcaatta ctatttttac cttttgttag ttaatcatca atgaactttg tacatatact 3540 agctataaca tgccattgta actcatttat aacctgaaga aggcaggtat tggcctgccg 3600 aaatatcgtt ctaaaaaaca taaatctgcg ttgttgtcga ctttttcttt taagggttta 3660 ttaattaatc aactgtcgac gcagaccaca aggtccgacg cacaccagca gatagaggct 3720 gttcgggggg ttctttccac gtttttg 3747 // ID BEL-6-I_NV repbase; DNA; NEM; 5458 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone BEL-6_NV autonomous DE LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-6-I_NV; KW BEL-6-LTR_NV; BEL-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5458 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5458 RA Kapitonov V.V. and Jurka J.; RT "BEL-6_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 375-375 (2007). XX DR [2] (Consensus) XX SQ Sequence 5458 BP; 1559 A; 1070 C; 1638 G; 1190 T; 1 other; cgtggtcctt cgagccggat agaagatgag tgggcagtta gtcctgaaaa agaaagtgcg 60 tggagctcat agaggggcag caacgaagtt gattagaaag gtaaatgaga tcttggatct 120 tgaagaacac agcgaagatg agaagttagc gatccgccag caccgagaca gcgccaaaga 180 aaaggcagag acccttcgcg cactcgacga tgaggtcatc gagttgtcgg cggagaaaga 240 agatagcgaa gagctcgagg caatcataac ggagggcgac gagatgcggg cgagactgca 300 cgaggttatc cacaggatgg aggggttaat ggcactgtgg gatcaacccg catccccagc 360 gatcagcccg gctagcttgc ctagttcacc ggcaaggtct tctacctcga ctgaggcgag 420 agtgagagca aggctaccta agcttgaagt gccgaaattt ggtggcaaaa tacaagaatg 480 gccggaattc tgggactcct ttgagagcgc cattgatagc aatgaggcgc tcgcggacgt 540 agataagttc gcttatctga aggggttact ggtagacgag gcgaaacaga ccattgctgg 600 tttcgcgatg accgcggcaa actacggcgc tgctatcgaa atacttcgca agcgatatgg 660 caaaaccgag gctatacagc ggtcgcacat taacgaccta cttaacctgt cgcctgtttt 720 taacgatggg gacttaacga ggctgaggcg gttctacgat gtagcggaga cgcatttccg 780 agggctagaa gctctaaatg taaatgaaac aagttattcg gggatcgtgg taccggccct 840 gctacagaag ttgccgaact cgttccggct cacaatcacc cgtggatatc aaaacttcat 900 gtcatggagt atggaaagac tgttggctga gatacgagcg gaggtagagc tgagagaaga 960 gcacaagccg atttcttctg aggcaagtaa caagaaacca caagacggta tgcaaaggca 1020 aacaagcggg agcgcattat ttgttgaagc taatggacag gggacgtgtg tttattgtct 1080 tggaaaacac aagtcagaga actgtgagag attcaagtca ccgggagagc gaaagaaaat 1140 cttggttaag tatgctagat gttttagatg ccttaggaaa aatcacaggt cctacgagtg 1200 tagatcgaaa gatagtaact gtaagggctg cgcgggcgcg catcatcttt caatatgcga 1260 aaatcaagct agtggccaaa cagaaacgcc acagcaggaa cggggggaga gcgagcaagc 1320 gggagaagct acttcaaatc acgtaacttc ggggtttgcg gagagttttc atgttggctc 1380 tggtacgcgc atagctttac aaacagcgca gggcattgtt agctgggaag ggggcgtatc 1440 agctaggaca aggtttttgt ttgacgccgg aagtcaccgc tcattcatca cggcgtcggc 1500 agcgcgcaaa gccaaacttc ctgtcgttag gcgtgaatgg ctttgcatta acgcgtttgg 1560 tcagcgcgac cagaaaggca cgctcagaga ggtggtagag tttaatgtaa gtcctgtaaa 1620 tggaggtgct agcattaatg tgcaggcgtt cgtagtgcca gagatttcca gcatacccaa 1680 tggtcatgta gagttagcta gagatcagtt tccgcacctc aaaggtttat ggttctcaga 1740 tgtgaatagg aatgaggaaa gactagaaat agagatttta gttggagcgg attatctttg 1800 gcattttcag aaaggacgag taattcgagg caaagtagag gaacccgtcg ccatagagac 1860 agagttagga tgggtattgt caggccctat gacagtagat agtgaatgtg tagagaatgt 1920 acagatagta caggctaatt tgttagtcca agaccggtca gcagagcaat cagagagttt 1980 ggagagtgag atagcgagac tgtgggattt agagacccta ggtattagag agacacaggg 2040 agtacaggaa gaatttctgg ataacatttg tttcaatgga gagaggtatt cggttaagtt 2100 accatggaag gtcaaccaca gatcgttacc tactaattac gaaaacagcc taggacgcct 2160 tcatggcaca atgagaaagc ttaggcaaga gccagaagtg ctagaccagt acgaggcagt 2220 aatcaagggt cagttagagt cgggagtgat agagccggtt catgcgttag aagatggtaa 2280 caagatccat tacttaccac atagagcggt agtgcgtagg aatgttgcta ctagtacacc 2340 ggtaagagtg atctatgatg cgtcggcgaa gacaggtaaa aagggcgtgt cgctcaacga 2400 ctgtttacac gttggaccgt ctctcaaccc cctcctattt aatgtgttgc tgagattccg 2460 tctccacagg gtagccctca tagcagatat cgagaaggct ttcttgaata tcgaagtcga 2520 ccctggagac cgagattgtt tacgattctt attcccagag gacccgagaa gggaggattc 2580 cgtaatcaag gtataccggt tttgtagagt ggtgtttggt ctgaacgcct cgccatttct 2640 attgaatgga accttgaggc accacctcgt gaagtttaaa gagatagatc ctgagtttgt 2700 agagatgtta gtcaacagtt tttatgtaga tgacttggtg acagggagta acaccccgga 2760 agaggcgtat gagttatacg tgaagtccaa gtcgagattg gcagaaggtg ggtttaacct 2820 gcgcaagtgg cagactaacg atagcgagct cagaggtagg ktggatgtaa gcgaagggag 2880 atgtatgcca ggtagtcaag aaggtgtggc gcgtggtaag actagccagg gcgtggcaag 2940 cgactgtgat attcagaagg tgttaggcct accctggaat agcagtagtg acactatagg 3000 actcacattt ggccacctgt atgagaaggc gcaacagtcg ccagcgacga agcgaaatgt 3060 gctcagtgtt cttgcaggta tgttcgatcc cctaggaata gtaagcccag taactgtagc 3120 tgcaagaatc ctttttcaga ccctgtgtag aatgaccgag ttaacctggg acgaggaatt 3180 gactggagag gtaaggaaag agtgggaggc ctgggttaaa gacctgggaa atttgatgag 3240 tgttgaagta cctcggtgcg tattggacac gtccaaccgt aaggtgcaga ttcacgggtt 3300 tgctgatgcg agtcgcaagg cgtactgtgc cgtcgtatac ctcgtatacg acgtgggggg 3360 agagaggcag gtaaggttac tttgcagcaa gactagagtg gcccccctta aagagatgac 3420 aatccccagg ttagagctaa tggccgcgtt aatccttgcc cgtctagtca gccatgttaa 3480 agaagcacta ggcacactca ttgaagtaga aagggaggtg tactggtcag atagcaaaac 3540 agtgttatac tggttggcga acaaaggtga gtggaaacag ttcgttaagc acagagtaga 3600 tgaaattttg cagctgacta ggaacggtga gtggaggcat tgctcgggag aacagaaccc 3660 ggccgacatt gggtcacggg gtgcactcgc ctccaaactc aagagtagtg cactgtggtg 3720 gaatggccca cactggctga ctggtcccga acagggatgg ccagcattac agatcgagag 3780 aacgccagct ggggcggaag aggagaaggg cactgtaagt atggtagtca acaccagagt 3840 accgaagagt gacatatcta gtgtaatcaa ccctaacaat ttcagtaatt gtagcaagtt 3900 gttcaaggta acagcgtatg ttcggagatt catgcacaat gttagggcag agaaagtaga 3960 agacaggatg acaggcaggt tatctagaga ggagatgacg aacgcagagc tagagtggat 4020 aaagtcagcg caagtagact tgacgcaaca agcgacgttt aatcaggtga ccaagcagct 4080 agatttagta gaagaggcag gcatacttag gtgcagaggg agactgggta attccgagct 4140 tgcgacagac gctagaatgc ccataatatt accgagagat cacaggctga cagagctggt 4200 tatactagac tgccatagta agttacacca cagtggtgtt agcggcacct tagcgcagtt 4260 gcggacaagg ttctgggttc cgaaaggtag acaagttgtg aagaagatag tgcataggtg 4320 tgtcacgtgt aagaagctag aaggcagggc atacgcgccg cctcccgtgg cggatttacc 4380 aggctttaga gtcacgcagg cagagccatt ctccaaagta ggagtagact ttgcaggtcc 4440 tctctattac aagagtagta caggtatgat gcagaaggcg tatgtggcac ttttctcgtg 4500 ttgcgtgaca cgagcattat atctcgattt agtggtagat ttagaggctt gtactttcag 4560 gagatgcctt agaaggtttg cagccaggaa gggagctcca acgctgatag tgtcagacaa 4620 tgcgaaaacg ttcaaagccg cagcaaaggc cctgagggag ctatatgacc acccggaggt 4680 acaagcatat ttagaggtca acagagtatc ttggcaattc aacctagaga aggctccatg 4740 gtggggtggg ttttacgaga gaatggtagg aagcgtcaag cggtgtttga ggaagacctt 4800 gggcgaggca cgattgacct atgatgagtt ttggtggagg tcgagagcac actgaacgac 4860 aggccgctta catatgtgta cgatgaggtc ggagaggtgg agcttacacc agcccatcta 4920 atgtatggca gacgactaaa tagctttcca gacgaggtag tagagccaga cgatgtagcg 4980 aatccagacc acaacagtcg gtttaggtat gtaagtgcta aactctccca tttttggaag 5040 agatggagta aggagtatct agctagcctt cgagagttcc atcgtagtag tcgtgtcacc 5100 gggcatcata gggagacagt tcaagtagga gatgtagtga cagtgcacga ggacggcagt 5160 aagaggagtc agtggaagat ggcggtagta gagaagttga tcaagggcag agatgacgta 5220 gtgagaggag cgcaagttag acttgtcaag aagggcaagc catctcgcct ggacagacca 5280 gtccagagac tctaccccat agaagttagg tgcgcggact cgacagtgaa tcgcagcgcg 5340 tgcgcggaca ggagcgtgca taccagagcc aggtccactc gagccgcagc attgcacgcg 5400 cagaatagaa tcgcgatcgg ggctttgctt gactcctaag agtcaagggg ggggggag 5458 // ID Gypsy-7-LTR_NV repbase; DNA; NEM; 146 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-7_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7-I_NV; KW Gypsy-7-LTR_NV; Gypsy-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-146 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-146 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-7_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 579-579 (2007). XX DR [2] (Consensus) XX SQ Sequence 146 BP; 35 A; 36 C; 28 G; 47 T; 0 other; tgttacaata tctgggttcc ctgtggtaag aacaataaag tcccggatgc agccctccat 60 cttggctaca gagctaaaca ctcgtgttgt tgtctttctc tgatcttctc gtgagattat 120 ctactgttag cccacatctt gaaaca 146 // ID DNA-6-11_NV repbase; DNA; NEM; 185 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-6-11_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 6-bp TSD; KW NVREP420; DNA-6-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-185 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-185 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-185 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-11_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~83% identical to the consensus. XX SQ Sequence 185 BP; 52 A; 55 C; 33 G; 45 T; 0 other; cagccttctc aaaaccgccg gctgccggct caacgagccg cctcctctgg aggtttgacc 60 gtctccatcc agacagaaaa tatattattt ttgttttgtt actgacaagg aaaagaaacc 120 ttcagcaacc aaaccgcctc caaactcaca atgacctgct cctcaaaatc tttttgagaa 180 ggctg 185 // ID RTE-5_NV repbase; DNA; NEM; 3578 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone RTE-5_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3578 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3578 RA Kapitonov V.V. and Jurka J.; RT "RTE-5_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 659-659 (2007). XX DR [2] (Consensus) XX SQ Sequence 3578 BP; 1102 A; 781 C; 922 G; 773 T; 0 other; tcaggtcagg tcaataaatc ctgctaccgg taaacatgta gcccggtact acctgtctca 60 ggtcgagttg ctggcgacta aactggcagc cccctggagt atcattactc caggtggaag 120 ggtgcttctg atcatcctgg cagaactaaa aacaaaatct gtcttaaggt ctctggtggg 180 ccaaatcaga aaggagtatg tggcaccctc agagcggaaa ccgacagact ggttctccga 240 tcagccgctg cagcatacct ggagctatga catgtctcgg cttgcccttg cctgccataa 300 ctgtctctag gaaatgccga gagagtgaat ctagaagagc aagacctagt tttacttcaa 360 atcacgctga atcagcgctt gcatgcagtt ctatgaaata tggtcagatc tgaattaccc 420 aatgccggct cgaacgtcgc ccggacaaac aaggttcgcg ctgatcatct cccgctccgg 480 atgacagtga aaagtaagct aggacgcagg aaacgactcg ttcttgcaga atggaatgtg 540 agaacactca tggacaggtc tagatctgag agacctgaga gacagactgc cctcattgcg 600 cgggaactgt cgagatatga ggttgatatc gccgccctta gtgaaactcg cctggcgaat 660 tatgacagta tggtggactg tggctatact ttcttctgga gtggaaagac agaggaagaa 720 cgcagggaat ctggtgtggg tttcgctatc agaaaccaga tcacgagaat catggaagag 780 gatccaacac cggtcagtga caggataatc accatgcgtc taccgctaga gaagaaggtg 840 tatgcgacag tcataagtgt ttatgcaccg actctgacaa acccagatga gaacaaagag 900 cagttctaca gtcaaatgag ggaggtgctt tccaaagtcc caaagaagga taagctcatt 960 gtcacaggtg atttcaatgc aagagttggc tgcgaacacg agaagtggga aggtgtgtta 1020 ggacaccacg ggattggaaa atgcaactca aacggagaat tgttactcac cctctgcgct 1080 gaacatagct tggtgatcac caatactatc ttcagacata aagagcatca taaggtcact 1140 tggatgcacc cccgctccaa gcactggcac ttattagact acatgataac gagaaagaaa 1200 gatctgaatg acatactgga cacaagagtt atgagagggg ctgattgcgc cacagatcat 1260 cagatggtca ggtccaaggt ggccttctcg ctgaggagac cgcatgcacg gacaaaggct 1320 aaaccaccaa caaaactgga tgtgcggaag atcaggagtg gtgacatgaa ggctaagcta 1380 caacacgaaa tgaatgaggc cctgaaaaat cttgaagaga tggatgggag tgagattgag 1440 gcacagtgga atactctgaa gacagttgtg tatgaaacag cagaaaaagt atgtgagaag 1500 ccgaaacgaa aacaccaaga ctggtttgat gaaaacgata aacatctgga atgtctgctg 1560 gaaaagcgga atgctgctag agccaatatg ctgcaaacaa acacaaggtc caacaagaat 1620 aagtacacgg ctgcaaggag ggtacttcag cagtacacga gaaagctcaa gacagactgg 1680 tgggaacgaa aggcagaaag tctacaacag gcatcggatg taaatgatat gaagggcttc 1740 tacaacggac tacgagaggt gtacggtcct gcaaagcgtg ggtcaaccca actcactgct 1800 actgacggat gcacaatact tcaggagaaa tcggagatcc taaacagatt tgccgatcat 1860 tttgaccaac tcctgaatgt atcagggctt gtggatgagg gagcactcaa cagtctccaa 1920 acaagaccag aggtagtgtg cctttctgag ccgccagaca taaaggaggt tgtggatgca 1980 atcgatgcta cacaagaggg gaaatcacct ggtaaatgtg gtatacctgc ggaaatctgg 2040 aagcatggtg gtacagagat tgtgtccaag ctgcataaac ttgtcctcaa agtctggtca 2100 gcggagaaca cacctcatga ctggagagat gccagtatta tccctatttt caagaaaggt 2160 agtcggagag actgtggaaa ttacagaggt atatccttgc tttccatcgc tggtaagatc 2220 ctctctcgtg ttctgctgaa caggattaac agacacatag caccagtcat actgcccgag 2280 tcccagtgtg gtttcaggag tggcaggggc acaatggaca tgattttctg tctgcgacag 2340 acccaggaga agtgtataga gcaaaacatg ccgctatatg cagtgttcat tgacttctca 2400 aaagcctttg acactgtatc gagagaggca ctctggcagg tcctggtcaa atttggctgt 2460 ccacccaagt ttgtcaatgt tatacgatcc ctccatagcg gtatgaaagc ttctgtatcc 2520 caaggcggaa acgactcgaa gcaattcgat gtctccaatg gagtaaagca agggtgcgtc 2580 ctggcgccaa cgctcttttc tctatacctg tcggccatgt tggagatagc cttcaaggac 2640 tgtgttgatg gggtgtcaat ccaaacaagg cataacgccg acctattcaa tgttgctcac 2700 ttcaaagcga aaaggaaaac atgccaggtc atagtacgag aaatgctgta tgcggacgac 2760 agcgcattgg tggcacatga tgtggaaagt atgcagagat tagtagacag attctcctca 2820 gctgcagaac aattcagcct gaaaatcaac atcaaaaaga cagagtgctt atttcaacca 2880 gtgaagcgtc agacattgac tcaattccct ggcgaaatcc atgtaagaaa tgagaccctg 2940 gtccagacca aagactttgt gtacttggga agtaccatct ctgacaatgc acgaatagat 3000 aatgagatca ccttcagaaa ggggaaggcc agcgcagcat atgctaagct gagagagcgg 3060 ctgtgggaca accatcacgt atcgctcaag gttaaaggca aggtctatcg agcagttgtc 3120 ttatctgccc tagtatacgg tgcagaaaca tggactgtat atcgcagcca ggtgaaaaat 3180 ttacatgcat atatgatgcg acacctgaga gaaataatga aaattacttg gatggataaa 3240 gtcacaaaca aagagatata caagaggacc ggattacggt caatggctga cacactcatt 3300 gagaaaaatc tcagatggac tgggcatgtt caccgcatgg acactgacag attgcctagg 3360 cagctgctct actctcagct cacgacaggg accaggaatc agggtcggcc tagactcagg 3420 ttcaaagatg tggtaaagag gaacctgaag tggagggata taagctcaaa ctcttggcaa 3480 accactgctc gggatcgtcc agcatggaga gttaagatca aaggaccaac acaatagaac 3540 agtcatcgtc gcctcgacgg actgccaatg atgatgat 3578 // ID DNA-TA-20A_NV repbase; DNA; NEM; 5681 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone DNA-TA-20A_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; TE2-1_NV; KW DNA-TA-20A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5681 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5681 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5681 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-20A_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 5681 BP; 1791 A; 1031 C; 1061 G; 1798 T; 0 other; cagctacttc aataaactcc aaaagagtgc tctgccgcac gcgcccatac cgcgaggtgg 60 tatgggtaat atatgttgta acaggttttt agtaaacatg ccgcagtctt atagtgaaga 120 ccttcgctgg cgagttatct ggatggtaca gtttcttgca ttatctatcg aagacactgc 180 ggcctttttt tctatgtgcc gcgtacaatt gtaaaaggta tctgcaaaaa tagggacgac 240 aacggcaacg cgaaagacga cggcagaaaa caattgaaaa ttcaaagagc cagacgtgaa 300 atttactctt aaatggattc tgtctgatac atttagcttt ttttctttaa acgacaacgt 360 gaaaactcca agttcttggt gtagcgagga cgcaaacacg tgcactgaaa actagactat 420 ccttgttcac tacgctagaa ataagattct aggttttact atagtttttt cggggaataa 480 aacgagtaat ttttatctaa actagttgaa attgagcgca aagcatgaaa gctttttggg 540 ttctccctgc agtcggtcgc cgtcgtcgtt gctatttcgt tcaggcactt tgccaatagg 600 ttttctttta gtgtaactac ggagtctccg tgagtttgac acctcttacg ggataggtgc 660 taaacctact cttgtttcct tgtttaaggt aattcccttg aaatagttct ataacccaga 720 attttttaaa acttggagta aacaatattg aagttaaggg ctttcaaaaa atgttattaa 780 aaatgggggt aaccgacatt gttttcacaa cagaagggcg tactttagac gcgtttttac 840 tgatcgtgcg aggaaaaatc acaactctaa attttcaaaa gtagtgctta tagtctttaa 900 aaaattaagt tctgtttgtc gagctgccaa aatccgatct cctaaacaat aagccgtagt 960 agcaaacgtt caaaacaaat cacattctga gagatcgcac taaaagacac tgttttcgcc 1020 actatttata ctgtaaaaag cgccattttg aagtattttt acggctttta aatgaaaata 1080 aacaaacttc tacaagccaa ctttttttct tctttcagta tatcattttt ccgtatacat 1140 ttaactattt gagcaaataa aaaatggggg taaccgactt cgtttttctg tcaaagcgat 1200 tttaagtaaa aaacgcgcgc cttttgtttt gatttcttgt acaactgtgg cgcgcgcgca 1260 cacttaatag cagaaaattc gaacaaacag cgcgcgccac tatgcgcaga aggggtgcgc 1320 agtgcaattc aagggaatta cctgaaggaa taaaaccgat atccttcaaa acggctcgat 1380 catcgatatt ttatatctcc tatgctagaa gaatcttcct tgccaaaaat ccacgatttc 1440 ccaaattccc cgattttttt acagcccttt aaatatacca gtctgtaaaa cacctttgtc 1500 gctgaccgac taacgtattg cgggcgcgtg gcgcgaaaat caaacttgtc agctcgcgcg 1560 cgcagtctac atcttcattc acgaaaatga gcgcttctcc ctgtgaaaca acaagctctg 1620 ccgagtgaga aaacgatgcc agtgacatcg agacagagaa agcgactcaa aacaatacag 1680 caacgtattt ttgccatacc aagacgaggc atttgcggac aaatgatata tatctgtcaa 1740 attatcgaaa aataatggtt tgacaacggc agaatcgaga gtgtgatatc tgtagatacg 1800 aacaaaagga attatatatc cgttaactta catcataaag tttattgttg tcttgtttca 1860 tggttacatc atgcgagtac aactactcgc tatattttgt tgtttttgag aattttttta 1920 cgaactcatt cgcttcggtc ttcgattcta cgctactttt tttgtttgaa cacagcaagt 1980 tttacattca gataccgtct ctaaaatggt gaatatacga ccctgaaata aaattaaact 2040 atttacccgt ttgccgtttt cgtcactcgt cttattttga cttgaaatga gtattttgta 2100 atgtataaga tgtttacatg agcactttta aaaaaataaa aatttatata taagcaaatc 2160 ttatatcgcg aaataatgtg ggtcctttag cttttcacct aggtttttga gatcgtatat 2220 cattgaaatt atcagtaatc tataagaata catgaaggac cccactttga gcaagattta 2280 aagcattttg tgcgaggtga aattgaactt tttgtggcca aagcaaatga tgctatgaga 2340 atggcaataa aactacttaa atccagatga ctactatatc acatacatac tatatataaa 2400 aaatgcttgt tgcattcttt tgtcatggag tttagcaatg tttatatttt aaaaggcaga 2460 gagggcacgg ctcacaaaat acgatgtcca acacgagaca aaatatgtat cactgtttgt 2520 acgaaaaaat atgggtcctt tagcatttca tctaggtttt gaggatcgtg tatcattgaa 2580 attatatttg atctatacga atacctaaag gacttaactt tgagcaaggt agcaagcact 2640 tagtgcgagt tggaattgct gttacccaca ccaaaatggc gccgtgtttt tgtcacgcaa 2700 aacgatgaga tgaaatggtt aaaaaaataa gactgttcaa agggtcttca ttttcattta 2760 cgactagcct aaaaaatgct ttatattgat atttggtcag agcacggaga ggaaaaagac 2820 gacaagaagg atttagcgat tattacatct ctagtgagac ggaacaaaat atgtttacct 2880 gcacagcaaa aatgtcaaag gaaattatat cactgtttgt gccaaaaaaa tgtgggtcct 2940 ttagcatttt atcaaggttt tgggggttat acattatcta atttatatgt aagctatata 3000 gatatctaaa ggacccatct ttcagcgaga taatcagcat ttcgtacaac tagttcagta 3060 aactatgata gcggcaatga caccatgttg ggacatgtaa tgcaaagtaa atggcttcaa 3120 aattgcaaaa tcatctgaat tattaataag tggctacttc aaaatgcaag caggatatac 3180 gttttatatt tgtataaggt tatatttaca ttttaagcca gttacgaaga gggaaagcac 3240 tttatttcca cgtctaataa agttgcaagg taaagacgcc ccatgtagcc aaaattgttt 3300 tttctcacgc aaattcacgc gagctctcgc aattctcctt atatggtgat catttcgcgc 3360 caactcgagc tttacccgtg aggggactgg gcaagaaggt gttttacaga ctggtatatt 3420 caaaaggctg taaaaaaatc ggggattatg ggaaatcgag gatttttggt aataaagatt 3480 tttctatcat aggagatatt agatatcgat ggatgaaccg ttttggagga tatttttttt 3540 attccttcag atacacttta aagacgcgca gatatacatt tagaaaatta tcagactgta 3600 cttccattct gatagcgttc aacgaagttc gcgtcggcgg tcagtctacg gaacagatgc 3660 tcatgagtta acttatcaag ccctctatct agctcaatga taattaaccc aagcctgtac 3720 ttgagcacat ctttgtaaca tttcgaaatt tagcgtgaac aacttttcta gcagaattct 3780 ttagaatttt tttcatgaaa cgcactaaaa atattgatat ggtggaaaaa ggagaaatgc 3840 ggccgaaaag tgaatttggg ggtttgagtt agaaggctgt tttactcaaa gtttctaagc 3900 tgatcgctaa acttcgtaaa tcatccacgt gatcttaaaa aatgtcttga agatcggtct 3960 tatttggttc tttccttcac ttaaataaat cgcatattgt tcacaacaac acacaacaat 4020 tttaatggcg cattacgcct ttctggtcgt ttaagcttct attcaaaatt ataaaattaa 4080 ttgtcattga ttacccctca gttggctcac gggggtttac ctttgatcta gcatacagtt 4140 gatgtaacaa aggctgtctg atttaccata gttaaaaatg ggtcttttaa cttttttctc 4200 actaaccatt ttgaagcact gcaacatgca cttcgtggta taaattagtt tttaaccaag 4260 gcactctctc gattcttaac cgctttttaa ccggaaaaaa tagggacttg gggtcacatg 4320 acagtttgat gactcttgac atagagaacc tatttacaaa gtattttttt ttggttaata 4380 ttaatcattg gtcatgtgtt tacattttga ttcgattgaa tcgctttgct taaaagctgg 4440 taaaaaacaa ctttcacaaa agaaacagac tacactatca tataaatggc attttccttc 4500 ttcaggcgga gtaccaaaaa tgatttttct agcttcaagg aagcttaaga ggtatctctc 4560 gctgcttttc taccctctcc ctcggtgtct taccacaata atttacaata aaaatcatga 4620 tcgactcatt agcataaaac ctctaggacg tgaataaaat tatattttga gcgttttatt 4680 cgttttcatt ttctaaattg tgcctcatcc taaagagtaa tgttcacgca taataacaaa 4740 attttattta gtccaaatat aataaaccca attttggaaa aaaaatgaga aaagtttatt 4800 tttaatgcag ttgtcatgct ggaatgcaca gtcacttgtt catttcattt tttttctatt 4860 tacgcacgct tctacggcta gaacaaagat ttagtcgaga ctgagtgaac ggcactcttt 4920 ttaatttatc ctcctatttt ttaacgcgtt aggatctgga gcccatcttt tacacaccga 4980 gagttagttg gagattcata tattgtacat gattttcata aaacgagtct atgactaggt 5040 gtaccaaaaa tgtttttaga agcaaacata attattggct gttgttgcat gtctttgcta 5100 ttgaaggact tattgctctt aataaagggt gcaacggaaa tcagacctct cagacaaatt 5160 cctataggga attcttatca aacgtccaat acaaactttc cagcgagtcc gtaatcgttt 5220 aataatttca aaaccaggtg gaaatatgag ctcagagttc actcagatta agtaaaataa 5280 cagttttagc tatgctgtgt gtctcggctt ttaactttgc ttatgactgg atgtaccaaa 5340 aatttgaaat tttgctttca tgggataaga tgacccttat acttttttgt catgatagtt 5400 taaaaagtat aacaggcgag catgttatct aatgttagaa atgtaataaa aaaatcgcaa 5460 aacatcgcct tcgcaaagcg tgggctgttg tcgtgacaaa tgacagaaaa tggagtcgca 5520 tggaatcgag gacgccggac agtggcttat gcaaatgagc atctgttccg tagactgggt 5580 gaagaatggc agagcttgaa acaacatata ttacccatac tacctcgcgg tattggcgcg 5640 tgcggcagag cgctctttga caacgtttat tgaaatagct g 5681 // ID DIRS-16_NV repbase; DNA; NEM; 2012 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-16_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2012 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2012 RA Kapitonov V.V. and Jurka J.; RT "DIRS-16_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 410-410 (2007). XX DR [2] (Consensus) XX SQ Sequence 2012 BP; 652 A; 429 C; 414 G; 517 T; 0 other; gaggaacaag atattttgaa aaacctcgca aagcaatact ccacaactgt tcaggaaatt 60 cctgaaatta atgcaaggtt agccgacatt gctaagaatt tgctaaccga aaaagttgac 120 gatgacaagc tcactgaact aagaaagcgc tatggcaaac caaaaaattg tgaggcgctt 180 actgaaacaa aagttaacct tgccatctgg aataacatct cagaggaggc aaggacgaaa 240 gacgtaaagc tgcaaaggtc acaaaagtct ctgatcaaag gcatttcagc agttatacaa 300 gtcttaaatg acttactaac caaagctgaa tggccaacaa aacaagaggt tgtggacacc 360 cttatggatt gggtccaact gctggcaaat gccagccgtg aactaaacat tagacgcaga 420 gaagctctca gatatgagct acaccccagc tatcgttact tgtgtgcccc ttctaatccc 480 ataactactg aattgttcgg tgatgactta ccaaaagcgg tgaaagacat caccgacact 540 aatcgaatca cacccaaatc taagacatat ttgaaatggt ggataactaa tttgcctact 600 gcatacaaga acatactgca aaataaccat agaggttgag gtggaaacgg atgcctcaaa 660 aactgggtgg ggcagtgtat gagggccaag cggcccggtg caggtggact ctcttagaac 720 aggggaaaca cattaatgaa cttgaaatgc tagctgttta cctgggactt caatcattca 780 ttactgaatt gaagggaaaa catgtctcta taaaaagtga caactctgct actgtatgct 840 acataaatgc catgggaggt actaagcctg ttgagtgtaa ctccctccca aaaaatatcc 900 ggttgttatg catagaaaat tatatttggt taactgcctg tcatttgcca ggaagcagac 960 aagtactcaa ggcagtttaa cgatagaaca gagtggcatt aacaaccaga gaaattttcc 1020 caagtcacac aagtactggg tacaccagat gtagacttat ttgcatcaag atttaacatg 1080 tttgtttatt tatttccccc tttttgcctt ataaccaggt gtatacagaa cttagagaaa 1140 gatcagacta gtacactctt ggtagtacct ctttggccaa ctcaagcctg tgcacaaccc 1200 atcatacttc cacagcgacc gggactcttg accctacctc acgtaggggt acaacaccca 1260 ttgaaaagga aactcagaat aatggcatgt ctattgtcca gcaacatttc cagacagagg 1320 gaatatagca accagctgtt gaattactca tgcaatcctg gaaaacaggc accaggaagc 1380 agtaatcaac ctacattaga cagtggacag cattttgtgc taaacggaaa attgatcaca 1440 ctaggccacc tatagcattg ttgttggatt tccttacgga actctataac aggggtgtca 1500 cagtactatc aacacagcac gcagtgcatt gtctacatat atttcgacag acacaggagt 1560 tagtgtagga caacatcctc ttgtcatacg tttacttaaa cgaattcatc aggcaagacc 1620 agctcaacct aaatacaaag aggtatggga tgtgcaggtt gtgctgggta atctgtctac 1680 acttcatcca gttgacaagc tatcattgaa ggaattgcct tataaacttg ttatgttaat 1740 gttgcttgta gaacggacgc tcagtccaaa ttgttgttat gtaaaggtgg gttcgtcaag 1800 tcatgagttt atctggtatt gacacgtcga tatatgcacc tcatagtact agagcagctt 1860 ctgtttctgc tgctaataga gcatgtgtct ctctacatga tattctagag actgcagggt 1920 gggcatctgc acattgcttt gccaaataca ataataagcc cataaccaca agtacatctg 1980 catatgctag atcactgtta tccgaagtgt ca 2012 // ID Gypsy-70-I_NV repbase; DNA; NEM; 1794 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-70_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70-I_NV; KW Gypsy-70-LTR_NV; Gypsy-70_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1794 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1794 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-70_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 569-569 (2007). XX DR [2] (Consensus) XX SQ Sequence 1794 BP; 556 A; 403 C; 419 G; 416 T; 0 other; actgagaaag aaattatggg agctgtcaga aaagcagtta acccaggtct ttgtttgaga 60 acgggtaaac agggtttgaa tttagtccag acaagaagaa tgttgagggc acattaccag 120 gagaaaagtg ccaccgagct gtattcacag ctgacaacag ccgtccaagc ctctagtgag 180 tcccctcaag attttcttgt cattttgctt gatctgagac agaaagtatt attggcatcc 240 caagaaatag aatcagaatg cctggacgat gtattggtat atagaaagac gttttcccag 300 catttggctg atataaagca ggtattttaa taccttaaga agcacggtat caactaaaac 360 cgtctaaatg cgaactattt aggcgaaagg tgagatactt aggagaatca tatcagcatt 420 aggataatca tatcagcaag tggttatagt atggatccgg cggacacagc tgctatcaat 480 gcactgatag agaaaaggcc agccattgtg ggcgagctga gaaagattct gggtttcctt 540 ggatattatc gacagtatat caaaggactt ctcgcgtcat gccaaatcac tgtacgactt 600 actgtcaccc cccgaggaag tccaggacca gatgtaccag agaagaaagt ctgtgtcagg 660 taagaacaca agcatccagt taactggctt ccgtgtcacc agcagaaact tgaatttctg 720 atttcccagc tggcatcccc gcctgttatg gcctttccag actttccaga gaagcctttc 780 atattgcata ctgacgcgtc taaagacggt ctcggcgccg tactttatca gcagcaaaca 840 ttcggtctca gggttctggg atatgcttta aggacattaa cggccgcaga gaggaactat 900 cacctccacg caggaaagct atagttcctc gctcttaaat aggccattac ggagaagttt 960 cgagactacc tttgctatgc gccttcattc acaatctaca cagacaacaa cccattgacc 1020 tatatgttaa ccacggctaa gcttaacgca acaggtcacc ggtgggtagc ggagttagcg 1080 gactataact tcactatcaa gtaccgcccg gggacgatga acatcgacgc agatacgctg 1140 tctagactac cactagagcc ggaagaattg atgacctgtt gcactgaaga aatggacaga 1200 gcgagtgtga tggcagcgat gcagcctttg agtgaagacc gagaaaacaa tagtccgtgg 1260 gtcaacacag tcacctcaag gtatggcgaa gtaagcgcgg aaccaattac gacgcaacta 1320 cgattcaaaa aatgacgcca aatgagatac taaaacacca acaagaggac ccggttatcg 1380 agaaagtcat ggagtacaag ctgaaaggac tgcatccatc ccctaaggac cggaagtatt 1440 gggacagcga agtacgtact cttaaggcaa ctaagtaggc tccataacca tggcgacgga 1500 acactttggc gagaaacaaa gacaaaaaga cagttggtcc tcccatcaaa attaaaatcg 1560 ctagtttatg aagagctgca cccttggaga ttattgccat tgatttcctc catctagaga 1620 aaagttcccg tggaaatgtg tacatcttgc ttttcgtgga ccacttaaca agattctgtc 1680 aggcctaccc aacaagaaac aagtcggccc cgacggtggc gaagaagatc tatgatgatt 1740 taatacctcg gttcgggttt ccatccagaa ttcatcacga tgagggcagg gaat 1794 // ID Gypsy-22-I_NV repbase; DNA; NEM; 4230 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-22_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22-I_NV; KW Gypsy-22-LTR_NV; Gypsy-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4230 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4230 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-22_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 475-475 (2007). XX DR [2] (Consensus) XX SQ Sequence 4230 BP; 1295 A; 934 C; 1072 G; 929 T; 0 other; cgtggcgacg agagaaaaac cgaaaataag tcaagaagaa ggcgctagtg gtaaattggg 60 accgaagaaa cccgacgaag gatcgaaaat ccggtgagtt tgttccatga aatatggcga 120 ccgcagcgtt gtatggcaac ctctttgctt ttgatgagac cgaacacaat tggacggagt 180 ttatagaaat atacgaacat tattttgctg caaacaaaat aacagaagac aagttcaaag 240 tgagcatttt gtgtgccaac gtaggcccaa aagcgtacca cataatcaaa agtttgtgtt 300 taccggagaa accggcggac aaaacatttg agtttatcac caaggcagtg aaacatcact 360 ttaaaccgaa gctttccgaa gcgagcgcga gtctttactt taactcgaga attaggagaa 420 gtaatgaaag tgtcatgatg tatgttgcgg aactcaggag attagcagtt ccatgtaatt 480 tcggaggatt tcttaaccga gccatgaagg acagatttat cgctggcata aatgatgcag 540 aaatccaaca gaaaatctta tccacaccag atggagacct aacattcgat aaggctttcc 600 agatcgcaga ggcatatgaa tcggcacgcc gcaatgttag agaaatgcag aaaagtgttg 660 cacaagagga gccctcagta aaccaagtgc actactccca aaggcctaaa gggaagggag 720 gccccactag acagaggggt aactatgaaa acaaaagggg gcaggttaag gggtcccaaa 780 agacacccat gtcaggagac aaatcagggg gagaatgtta cagatgtgga aattcccatg 840 acccacaatc atgctggttt aaagatcaga attgctacaa atgtgggaag aaaggccatg 900 caaaaagtgc atgccggtcc ggggctacca ttacccatgt tgaagaagaa gttttcagtg 960 aagatgaaga tagtgaaggg ggtcccgagg gaatgtatca cattaggaac ccaggaaata 1020 aagttccacc aatcactgta aacctagaag tagacgggag gccaattgag tttgaaatag 1080 atacagggtc accctatacc ttaatttcgg aagaaaccgc caaaactctg ccaagtttcc 1140 acaaaatgaa gtcatctgag ttagacctaa cttcttttac aggacacaaa ttgaaagtcc 1200 tgggaactat tgagactgtt gtcagttacc atggcaactc gtgcaccacc tcagttgtcg 1260 ttacaaatca caagagggtt aatcttgccg ggagggatgt agtagagcag cttagcgtga 1320 taagtgtaaa ccacctcaag gaaaccctga ccctagagac tgtgcttgaa aggcacccag 1380 atatttttag ggacgaattg gggaagatga aaggcacgca agctaagatt attgttgacc 1440 ccagcgcaaa gccacttttc tacaaaccgc gctcactccc atttgctatg aagagcaaag 1500 taattgcaga gattgaccga ctcgtggaac aggatgtgat agagcctatc agacattcag 1560 actgggcagc gccggtagtc ccagtactga aacctaacgg tgagattaga ctgtgtgggg 1620 actataaggt cactgttaac aaggtttcca aggtcgagca gtacccaata cccaccttgg 1680 aggagttgac tgctcaaata gcaggaggaa ctatctatca taagcttgat ctctctcatg 1740 catattctca ggttgaactt gacccagata gcaggaagtt cacaaccatc aacacggtga 1800 agggtatgtt tcagtataaa cgtctgccgt atggagtcgc cagcgcccca gcggccttcc 1860 aacgtgccat agaagaactg ctgcatggaa tacctcaggt agctgtatac ctagacgata 1920 tccttgtgac aggtgagagc actgctgaat cgcttgagaa tttagagaag gtcctagcaa 1980 ggcttgatga ggcaggactg agacttaaga gagagaagtg tgtgtttatg caggacaagg 2040 ttgtatacct gggtcatcag attgacaaga cgggcatatc tccagtcaag gacaaggttg 2100 aggcactagt taaggccaag acaccggaga acgtcacgga actgaaggca tacctaggcc 2160 tattgaatta ctacggtaaa ttcttgaagg gtctgtccca ggtccttcac cctctgcaca 2220 agctcctaga gcatggggtg aagtggcact ggggaccaga acagcaaaca tgttttgaac 2280 taaccaagaa gatgattctc tcagcaggac ttttggtaca ctatgatacc gaaagagcac 2340 tagtactcca ttgtgacgct tcccagtatg gcctaggcgc agtcctatcc catatcatgg 2400 aggatggctc cgaacgacct attgggtttg caagtcgcac ccttagcgat gctgagaaga 2460 actacagcca actagacaag gagggagccg ccgtcgtctt cgggctaaag aagttccaca 2520 agtatgtgtt tggtcgagat tttgatataa tcacggacca caagccatta ctgtcactgt 2580 tccatgaggc gaagcagaca ccggtcatgg catcgcccag aattcagcga tggtccatat 2640 tgatgagggc ataccagtac cacatgaagt acagagcagg aaatcagcat gccaatgcag 2700 actgtatgtc ccgactgcct ttacctgtga aagcgcgtac tgaagacaga gtattgatga 2760 tagaagagtt agaagactgc tctatcttga cctcagagca gatcagccat tggacaagga 2820 aagatcctgt actcgcacat gtacatgagt acctgttacg cggatggccg acagatgaca 2880 cagatccagc ccttacaccc tatcgcaaga ggagagacga gttaagcgtc caagatgggt 2940 gtatcttatg gggtgcgaga gttataattc cacccgatgg tagagatcaa gtcaagcgag 3000 agctccactc tgcacatccg ggcatcaatc ggatgaaggc cttggccagg agttacgttt 3060 ggtggcccgg aatggatgaa gagctagcag agatagtgag gagatgtgat gtttgccagg 3120 accggagaag aaacccgcca tcagctccat tgcacccatg ggaatatccc gatggtccct 3180 ggaagcggat ccacctagac tacggtgggc cggtcgaagg tcacatgtta ctggttataa 3240 ctgatgctta ctccaagtgg attgagacat acctgatgaa gtcaacaaca tctcaagcaa 3300 ccatagacaa gctgcgtgaa tgcttcgcac ggaacggtat tccagatgtt gttgtatcgg 3360 ataatggtcc taaccttatc tcggaagaac tgtcaacatt cttcagtaag aacggcatcc 3420 agcacatccc ggttgcgcca ctacacccat ccagcaatgg gcaggcagag cgaaccgtgc 3480 agacagtaaa ggaagggata gagagaacgc ctggaagaga tttgaccaca aaactgcaga 3540 gattcctctt ccaataccgt gttacacctc acacgacaac cggtcgtagc ccagcggaac 3600 tgttaaacgg ccggaagttg aaaacaaggt ttgacttgtt acaccctgct ctccgaggtc 3660 gagtcaggga caaccagagt aatatgaaga gatatcacga tgggaagaca ccactgagag 3720 catttacagc aggggacttg gtaagagcca agaactttgg acatggagtc aggtggttca 3780 aaggtaaaat ctccaaggta actggtcctc tttcgtatga agttgagctc atagacggta 3840 gacttgtgcg cagacacatt gaccatttgc tgaagcgaga ggcagacaca gacgtcaatg 3900 agaagcctag ggggaattct aatatctcct taggtccaat ggagctggcc ggtgtagaca 3960 cagttccaat agaaagtctg gtgccaccga catccaccac ccccatatgc gagccagttg 4020 cagcgacacc agacgatact cagtcagtgc ctattgctac tacagagagc cgctatccta 4080 cgagagttcg acaaacccca agtcatttaa atgactatgt tttgtaaata aggtccttgt 4140 tgcaatactt gttgggttca ccaggacttg gacacataga cacacatatc attggtgtac 4200 tgtagtatgc tttagctagg aaggaggaag 4230 // ID DNA-7-23_NV repbase; DNA; NEM; 3264 BP. XX AC . XX DT 11-MAR-2011 (Rel. 16.03, Created) DT 11-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-23_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP34; DNA-7-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3264 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3264 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3264 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-22_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (11-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 3264 BP; 1058 A; 574 C; 585 G; 1047 T; 0 other; caggggctca taagtagggg caatcatctg tatcatataa gtgtcacggc gtttcctagg 60 atcaggctat ttttagacgc acggattagc caatcagatg acagggcgga aaaattgact 120 ttgtctcaag gaatccaaaa tggcggccga gaagggggaa aacgacgctt gcttttcaaa 180 gtcttcctac atcgtcatat gcctcctaat ttctgaaccc ttttagccac agagaaagaa 240 acattttctc actagccttg gactatttat ttctccataa gtggactcaa acgttgttac 300 gaggacattt tttcttgctc ttgcaaagca ataaattcgg aaataagtga tcatttgttt 360 cgatctcgaa attctctcgc tgagaggcca tattatcatt cataaggtgt ttgatactgc 420 tagttaacta acaatagtgt aagaagtaac atacggaagt ttatgtcttg tttttttgtt 480 ttacatttat attaaaccag ctcttcaaaa ctgtaagtaa ttgtgtttgt ataagaaaga 540 atttagtcat gatgcgcata aatatcaaca ctcatgacct gccctggact caacttgccc 600 tgatctggta agaaattgta aaaaataacc atgtaaaagt atactaacat aaaaggcatt 660 acatttgtgt ctttttttgt aaattctgtt tccattttta agcttaattc gaaaattgat 720 acttgttact tactcattta acttataatc tgttatgaat acttaagtat tacatactta 780 cggtatctta atttgttcaa atttgacttt cttttgactg acctcttggc tgtccagaaa 840 tcataataag atttaaaatc attgcaaaaa aggccaggag tgtataaaag catgcatatc 900 tgtcatcctg gcttgtaata agacttgcca tcattatagt aatggccctt gtaaaatctt 960 tcaaaaaagt tcttgatgga aagatgatgc tgtcactcaa acagtttcag gctcttgaaa 1020 tattgtggat cacttgggga aatggactcc aggtccattg accacctggt gcttggaccc 1080 cttatcaaat attataagat tttttctcag actgacataa cctttttttg tatatagaca 1140 tgggatctat ggattgtatc cttggtttcc tttagtttgc tgaatggttc tttatcattg 1200 tgccaattgt gtgatgatta tgatgattat ttcatcagtc cattcatttc gtgtcagtgg 1260 tagcactctg gagtccattt ttagtgtcct aagatttgga agtggtgaaa gcatctcata 1320 tggccaagcc ttggtacgcc aatcaaccga aaggatttac aacgaaacaa atattcagag 1380 gaaggatata gaaatgtcat gatcaatgta gatggggcta atatttaagt tacaatataa 1440 attgttcaat ttttttagtg cacatgccta gaaagtaata gctgttctaa cattccattt 1500 tggtttgaat gggtcaaata acatttgacc aagagctctg caaagccctc ccataacaac 1560 attaggttaa catattcacc ctatatagct accaactccc ttgccttagc ttcaaaatac 1620 ccagtttgtg gctattattt cctggtttga taagatgttg agaatcaagg caaataagtc 1680 aatagcttgg acatatttca tactatgact ttgataacca ggatttacaa gctttgattt 1740 gttggtgccc tgcttcagtc tgtgaagaga aaaatctggc cttgcaccaa aaaaatgtca 1800 gattcttaga agttgtgtta acaccatgcc aaatgaatgt acacaaaatg ggccaaataa 1860 gcccaggaag aaaaccactt gacaacttct atcctgctgg atcttgtgga ctgtgtcaac 1920 agttagggac aaatacagac tttaaaagaa aaaggttgac accattcaga ggtgcttttt 1980 aatacactat attttggcag gccaatacct gcagttaata tttaatagta agagtagcat 2040 gtttgcagct aatatgaaca acttcaaaaa ataattaact gaaaaaatga taattataat 2100 agggagttgt gtaaactaag ttattttaca gtaaacaaaa gtcaacaata aagctttttg 2160 agtagcaaaa cacagtcatg aatgtagcag atattatcat taaaagaaaa acttcaggat 2220 attttcctta tcattacata taattatcta ttacagcgaa ataacagact gttattatta 2280 cagggaaata acagactgtt tgagtggcag cataatcttc cccacaagag cttttctgaa 2340 agatttaaca aggactgaaa gtgcattact ataatggtgg caagtcttac attatatgca 2400 tgcttttata ccctccttgc cttttttgta atgattataa aacgtattat agtttctggt 2460 cagccaagag gtcacatgag aaacgacttc agtggatagt cactataata cacatcctct 2520 ctatcctctt tttttggaaa gtcaaatttg aacaaagtat tcataacaga tcataaataa 2580 caagtataaa ttttttaatt aaatggaaat agaatttaca aaaagacaca aatatccata 2640 ttgaggttgc cttttatgtt agtatacttt tacatggata tttcttacaa tttcttacca 2700 gatcaggaca gtgagtccag gacaggtcat gggtgttgat acaaacacag ttccagcttt 2760 gaagagctcg tttaataaaa atatttaaca aaaacaagac ataaactttc gtatgttact 2820 tcttacacta ttgttagtta actagcagta tcaaaaacct tatgaatgat aatatcgcct 2880 ctcagcgaga gaatttcgag atcgatacaa atgatcactt attttttgca agagcaagaa 2940 aaaatgtact cgtagcaacg tttgagtcca cttatggaga aataaatagt ccaaggctag 3000 taagaaaatg tttctttctc tgtggctaaa agggttcaga aattaggagg catatgacga 3060 tgtaggaaga ctttgaaaag caagcgtcgt tttgcccctt ctcggccgcc attttggatt 3120 ccttgagaca aagtcaattt ttccgccctg tcatctgatt ggctaatccg cgcgtctaaa 3180 aatagcctga tcctaggaaa cgccgtgaca cctatatagt accagaatgt ggggaagttg 3240 attgccccta cttatgagcc cctg 3264 // ID Gypsy-38-LTR_NV repbase; DNA; NEM; 176 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-38_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38-I_NV; KW Gypsy-38-LTR_NV; Gypsy-38_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-176 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-176 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-38_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 508-508 (2007). XX DR [2] (Consensus) XX SQ Sequence 176 BP; 66 A; 32 C; 26 G; 52 T; 0 other; tgtagtaatc taatatctta atgattacgt catattaatc acatgatcac aaatattgta 60 attagcatat agcacatgta tgattaggaa agagttgaat cacacagatc tacaataaac 120 acgtaccgtc ttcactcatg gctttctgat agtagaacca cgataaggtc acaaca 176 // ID DIRS-38_NV repbase; DNA; NEM; 1404 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-38_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-38_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1404 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1404 RA Kapitonov V.V. and Jurka J.; RT "DIRS-38_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 434-434 (2007). XX DR [2] (Consensus) XX SQ Sequence 1404 BP; 375 A; 341 C; 253 G; 435 T; 0 other; gggtgggtta caatcccttt tcctagtccc caattgccca gttttcaggt atcgcccatt 60 ggtctagtgc caaagaagca ctctaagaag tataggacca tttttcacct atcataccct 120 aaatcaggag acacttgtat taatgcctca atatccaagg atgattttag ccttcaatac 180 ataactattg ttaacgccaa tcaaggcatt ctgtttcata gtcagggttg ctatctagcc 240 aaaacaaaaa aaacttgccg acaatgagct ctttggaatg ttttgggatg gcaaatatta 300 ttctgaaaaa gttatcccat tttgttttag aagcgcgcca tttttattca acatgttagc 360 tgatgcagtg gagtgatcct tctccaaaaa tgtggtatct cttttgtttg ccacatcttg 420 gatgattttc taatcataga accaccttct catttccccc cttccagttc actttgtagt 480 cagagttggt ctagcatgct cttagccttc aagaaactag gtatccctgt tgctgcccat 540 aaaactgaaa gtaaatttca cctgaacttt gaattctgtt ctctgtatag agtacttcac 600 ttcgcagcta acgaggaaac tctcatccat tatgtggcat accttgtcaa aacactaaag 660 tatacttcta ttaagagcta cgtagctgca gttcgacacc ttcatatatg ccagggctat 720 gatctggacc ttaagaaatg tatacgcctc cagttaatat gcagaggcat taagagatca 780 cagggtacat ccactaaaac ccgcataccc ataactatca atcacttgaa actatttttt 840 cagcttctag ctattcctac taccaacaac tacggttcca tcatgctgtg ggcaactatg 900 agcctggcct tttttggttt tcgcctagga gaaatgacat gcaactctgc atattttccc 960 gaggttcatc tctcagctga ggacatatcc tttctaccta gcgattccat gtcggtgcag 1020 gttaaggaat ccaagactga cccgttccgt actggtcaga ccattattat ttgcaaaact 1080 ggccaacgac tatgtcatgt aactgctatg caaacctatt tgaagcttcg gggtacttcg 1140 tctggccctc tctttcaata tccctcagaa acaccactaa caaaaactaa tttgacttca 1200 gaaaccagac agcttccttc tatgtcttgc tttgagcctt ctaagtatgc aggccatagc 1260 tataggattg gagcagcaat aactgctgca tctgttggcc tctccccatg gttaaaaagc 1320 tccttgggcg ttggtcctct gactgctacg aacgctacat tcggtgccca catttcctcc 1380 ttttgggtgt cagtcgtcag ttat 1404 // ID Gypsy-44-I_NV repbase; DNA; NEM; 5801 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-44_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44-I_NV; KW Gypsy-44-LTR_NV; Gypsy-44_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5801 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5801 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-44_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 521-521 (2007). XX DR [2] (Consensus) XX SQ Sequence 5801 BP; 1673 A; 1302 C; 1411 G; 1415 T; 0 other; ttttggcgcc caacgtgggg ctcgtggagt taaattatgg agattaccga agaagaaaag 60 atgaaaatcg agcgcgatcg agttgtaagt ctccttgggg cagagaccga agaaatcact 120 atcgaatccc tggtggagaa gtatacagct aagtataact gtggtttaga gttatggaaa 180 ggggagtttg taaaaattga ggcatttcta gcccactcgt gcaaagccaa agtaacgggc 240 tcaaaggtga taataatcaa ggaagaacca aaaactgttg cacctaccac cacgatgcaa 300 tatttttcga aaccacagtt ctcacagttc tttggctttg tgcagaccga taaaggggtg 360 tcgtaccgag tatggaggta cgaagttgaa agtgcacgaa aggaggccat atattccaat 420 gaattaatag ccgagcagat aaggaaatct cttcaaggag aggcaaagaa caaaatagtg 480 ggttttgggc ctgaggcaac actagattcg attctagaca gcctagacca attttatggg 540 gataatggtt ccgtgcatgg ggacgaacta atttcacaag cttataagtt caagcaaggg 600 gagcatgaag aagtatcggc tttcgcatcc cgacttgata cccaattacg taaagccaag 660 gaacaagggg cagaactgtt aaaggacgat gacgccctaa gcaaacacct aagcttaata 720 ttttgggagg gtctgttgtt cggaataagg gacaaagcga gacataagaa agatcaatgt 780 aagtcattta gcgaattgat tgaggctgcc cgttatgggg aaagggagta cagagttagc 840 catcccacac ataccagcgc cagttgtaaa caagctcaga cttctgctgc aaaaaatcag 900 gctcccgcat ggctccccga aattgttgcc gcagtgacca gggaggtgag ggatattatg 960 aaaccacagg ggtcccactt tgaacagtcc cagcccaagg tcacctcagg catgaaaagc 1020 caggtttacc aaacaacacc acccaattat tcatggaacc cacccccagc caccttttat 1080 ccccaaccac agggagccca aggctatcat ttggggcaac cacacccata tcagtatcag 1140 caatcttacc agtactggcc ctctcaacat tccagccaga tgttttcacc acagggctct 1200 gccttgccta ggacgagaac attgggtggg tcctcccccc agtctcctgt gccagagtca 1260 ccacaggtac cccgtgaata tttaccgaca tgttatcgct gtggggaacc cggtcacata 1320 cagagaaatt gtacaaacat tccatattcg ggaaacagga aggtgccttt gtggaggggc 1380 aaccaaaggc agtaaactac cagccccaca tgatgaccgt tttaaagtct ttgattggtg 1440 atgcaaatga gtgtattaca tttgttaatg ggagtccatg tctggcactt ttggacactg 1500 ggagtcaaat ttcatctata tcccaatcat tttatgagaa acatttaaag aactgtccgt 1560 tgaactctgt tgacaatttg atcaaactcg ttggggctgg gggggagcaa gtcccataca 1620 taggatatat cgaggttgaa gtttcctttc cggaagaaga gacaggtgtt catttggagg 1680 aatgtgcttt attgttggtg gtaccagaca atgattacaa caagcgcgtg cccgcagtta 1740 ttggaacgaa cattgcaaag gcattccatg tacgatgtaa ggaaaagcat ggagttcagt 1800 ttgttcaaag ggtacaaatc tcgactgcat ggagaagggc ttatgcatcg ctccacaaaa 1860 gggaacattt caatactaag caaagcaacg gaaaagtaga agttaaatcc acgctccgtc 1920 atgatattgt tattggtgcc catcagcgta cggtggtatg gggtttaacc cagtcctacc 1980 ctggagggga cagtttggct atcttagaga ctgccggaga taataagctt catccagatc 2040 ttactgttac aactagtctt atctcgcttc gcggaaatgg tgggaaatgt aaaatcccag 2100 tcgaagtcac gaacatatct gatgagccgg ttgttatcaa agggagaacg aaattagcgt 2160 gcatttcatt agcttctgct gtacacgaac caatcatcga acctgatagg ggtagtattg 2220 gggacattga taaaagtagt tttcacgggc tgtttgattt aagtggcgtc caactgaact 2280 ctgaccaaaa ggagagagta aatatcatgt tgaatcgcat gcaaggagct ttcgctaaag 2340 atgcgcaaga tctgggctgc accggcgtca ttgaacatga gatcaatctt tctgatgatg 2400 gtccttttaa agagacaact aggcgtgttc cacctggaca acttgaggaa ttcaaaaatg 2460 cgcttaatga tatgcttaac tcaggtgtca taaaagagtc aaaaagtccg ttcgcttccc 2520 cagtagttct cgtccgcaaa aaagacaact ccttaagagt atgcgtggat ttccgaagac 2580 tgaacagtaa aacgatcaaa gattcctatg ctatccccag agtcgtggat acccttcagt 2640 ccttgagggg atctaagcta ttttgtactc tcgatctaca aagtggctat ctacaagttt 2700 gcatttccga gaaagatcaa ccaaagaccg ccatgacaac accgttcgga cttttcgagt 2760 ttactcgaat gccgtttgga ctcacaaatg caccggccac gtttcaacgg ctgatggaac 2820 attgtctgcg agatctcaat tataatacat gcgtcgtcta tatggatgat gtcattgttt 2880 ttgcgaggaa tttcgatgaa atgatggtac gtctcgagga agttttgact cgactcatga 2940 agtgtggtct aaaattgaaa ccatccaaat gtaaactctt tcagacacgt gttagatgtc 3000 taggtcatgt agtgtctgca gagggaatcg aacctgaccc tgaaaaggta gctccgttac 3060 acgaatggtt gtcgaaccca ccaaagaaca caaaggaact gcaaaccttc ttaggttttg 3120 ctagctacta taggtcgttt gtcgagaact tctcaaaagt tgcagaacct ttgcgtcagt 3180 tactcattac aggaccagcc aagaagcata aacaatcctc gccaccttcc tcgtttactt 3240 ggaccagtga atgccagtca gcattcgaga cattgatttc acatttgaca agttctccta 3300 ttcttggcta ccctgacttc gagttacctt ttattctgca tatagacgca agtggatcag 3360 gtcttggagc tgcactctac cagaagaagc ataacaagtt gcgggtgatt gcgtatggca 3420 gcagagctct aacgcctgcc gaacgaaact actctgctta tagaagggag ttcttggctt 3480 taaaatgggc agtggcagaa aagttccgcg actatctgta tggggcaaag tgtgatgtct 3540 taacggacag taatccatta acttaccttg tatcatctgc gaaactgacc cctacggatc 3600 accgctggct ttcagctcta gccccctttg atatcaccat aacatatcgc caaggaaagt 3660 caaatggtga tgcggacggc ctgtcaagaa taccacgaga ggggtctgaa cccacccccg 3720 aggataagga agactactta aagccatttc ttgaacgcct tcagacatcg gaagaagcga 3780 gcacctgccc caaagaagta tttcaagcta tagtccaatc actagttgta gacactgacg 3840 acactcctga atggatcccg gttgccgagc aagttggtgc cagaccagaa gctgttgcag 3900 tagatttcca ggaacatcaa cgttttgtcc catcttctac tccatttatt tcagagaacg 3960 actggccgag attacagcaa gcagaccctg tgatcagtaa agtgctacct tttgttacta 4020 gtggtttacc cccgacaaga cgcgaactaa gaaagctgaa ctcaaatgca gcgagattag 4080 taaaggaatt cgaacgcttg gtagtgattg atggaacctt gaaacgccgc cgagaggttg 4140 atggggaaac atccttacaa ctggttttgc cctcaaagtt tcacgcccaa gtgcttaagg 4200 gtttgcatga cgatgttgga catttgggtc gagaccgtac tcaagatctg attcagtctc 4260 ggttttactg gcccttcatg gccagagatg tcgaagcgca tgtatcaaat tgtcaacgtt 4320 gtattgctcg gaaagcactg gacccaccgc cagcacccat gctctcgcta caagcaaatg 4380 agccgatgga tctcttggcg atggacttcc tttctcttga ggaggggaga gggggtatgt 4440 caaacatcct ggtcgttacg gattcgttta cgaagtttgc atgggcattc ccaactcgta 4500 atcagaaggc gggtactgta gcgaagattc tatgggagaa aatactcatt aattacgggt 4560 ttccaaggcg tctacactcg gatcagggtc gcgattttga gtccaatgtt atccgcgact 4620 tatgtctttt ggcaggaatt accaagtcga gaacaacccc gtatcatcct cagggaaacg 4680 cccagacgga gcgctttaat agaaccctgt tggatatgtt aggaacatta gatggagata 4740 agaagtcgag ttggccggag tacgtgtcat caatggcgca tgcgtataat tgcacacggc 4800 atcagaccac aaagtactca ccatactttc taatgtttgg ccgacatccg aagctaccaa 4860 ttgatgtaac attgggggtt gcatcggaaa tcgcacccac gaaatccttg tcttcctacg 4920 ttgagagttt gcgtgcaagg cttgactatg catacaagtt ggcttctaag gagaaagatg 4980 cagcggctga tcgaaacaaa aagagatatg atgttcgcgc tcgtgatgta gccctccaac 5040 caggagatcg ggtcttggtt cgcaatttga gtatccgagg aaaacataag ctgagtgacc 5100 gctgggaaga gactgttcac atagtcgaag cgcgccaagc cgacttacca gtctacactg 5160 tgcgaccaga acagggtggt agagcccgaa ctctacatcg gaacttgctg ttaccagtta 5220 aaaggacgta ccaaccagtt ggtttgccac cagatcacaa tagccgaccc agacggccac 5280 aggggggcaa gagacgtagg agaatactac ctcaagtgcc cccaagacca ataagacaag 5340 aggcccagga cgattccagc tcagctgaag acagcgatgg cctcgacctg tttggggttc 5400 ccactgcggg acccccagag ctgctgtttc aagccgaggt tgaggagcaa gacccacagg 5460 tagctgacga aatggaagac acagctccac cggtagtgga gaaccacgcg gcaaggcctc 5520 caagccttgc ctcatcggat gtctctgatg tgcagtcgaa accagagccg agaaccagat 5580 caggacgtgt ttccaagaag ccgcagcgtc tggtagagga tccagtttgg tcaagaaaac 5640 tgacagcgat gatttatctt atagactgtc ggaaccaaaa ggtttcgagg aactggcatt 5700 taagccatta ttagtagaca ttgagatcgt ataagatatt gtttattatt aacgtttatt 5760 ctgttaaacg tcgggacgcc gtttcccact aggggggacc a 5801 // ID DNA-TTA-1_NV repbase; DNA; NEM; 233 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTA-1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW TCTTAGT target site; TTA TSD; NVREP151; DNA-TTA-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-233 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-233 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-233 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTA-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~94% identical to the consensus. It was reported CC originally as the unclassified NVREP151 transposable element CC [1,2]. This transposon is usually inserted into the TCTTAGT CC target site, followed by the TTA target site duplication. CC A copy of DNA-TTA-1_NV has formed an internal portion of the CC DNA-TA-26A_NV transposon. XX SQ Sequence 233 BP; 62 A; 43 C; 42 G; 86 T; 0 other; tgctgcattc acaccaaaac catgtttagt taaacaaggt ttttctttgc ctgataactt 60 gccaagtttc tcattgtgtt gaattcttac tagctaaatg atcacttagt aacatgtaca 120 gcacagtcta ttcagttttg ttcttggttc tgtccactct tgggagattg agatttaaac 180 cagtttaatt aaaccacctt taaactggtt taagtgctgg tgtgaatgcg gta 233 // ID MSAT-4_NV repbase; DNA; NEM; 61 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE MSAT-4_NV non-autonomous DNA transposon - consensus. XX KW MSAT; Satellite; Simple Repeat; minisatellite; SAT-2_NV; KW MSAT-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-61 RA Kapitonov V. and Jurka J.; RT "A family of MSAT-4_NV minsatellite DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [1] (Consensus) XX CC This unit is usually forms minisatellite DNA in the SAT-2_NV CC unit. XX SQ Sequence 61 BP; 18 A; 26 C; 5 G; 12 T; 0 other; taccctatac ccctgagtac ccacccctaa ctaagctaca cccctatgac ctagcactaa 60 c 61 // ID DNA-TA-24_NV repbase; DNA; NEM; 645 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-TA-24_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW NVREP373; DNA-TA-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-645 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-645 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-645 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-24_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 645 BP; 188 A; 147 C; 124 G; 185 T; 1 other; tagcgattct caatacatcg cgacccttcg ccttgacatt ctaacggtga ttttggttag 60 ttcgtggacg tcaatcatcc gcgtttccat aacgatcaag gcagacttca tttgtttcgt 120 gtatcgaaag ttgtagtcga ctttactcag ggcccgagag ccacatttga caacacagta 180 aagaaacgca aaagttcagt tctcataaaa gggtaaaaaa tatattrcaa aacattcaag 240 gttcaagttt tgccagtcat ctcacaaaga aagcctcgaa actcttcctt caagattcga 300 tcgctgtcat gcaagtcaac aaacggccac ggttatcggc gataatttca tcttgttcag 360 ataatatttg attttgcgac ctgctaatta gatcatcact tgctctaatt cctgtgaatc 420 ttttgccttc actgttcgtg ccttgttcca aacgttttga agcaatttca gctgatcatt 480 tgagccaaac cgacctacgc gcttcgattc tcaatctcac aaacaaatga agttgactgc 540 gaaactacga tcgttatgga aacgcggatg attgacgtcc acgaactaac caaaagcact 600 gttagaatgt caaggcgaag ggtcgcgatg tattgagaat cgcta 645 // ID DNA-5-5A_NV repbase; DNA; NEM; 2709 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-5A_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-5A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2709 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2709 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2709 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-5A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 2709 BP; 785 A; 529 C; 575 G; 818 T; 2 other; cagggttcgt acaagtcctt gaaaaccttg aaagtgcttg aattttaaaa tttgaaattc 60 aaggtctgga aagtgcttga attcttatta tcagtccttg aaagtccttg aaaaatattt 120 gattaaagaa acaaaagtaa atcttattgg agtgaagatt aatagcaaat tgtagccaaa 180 tatatggttt gcgagctatt tctttgtata attatgtaca agataaagta tgtaaaatcc 240 atgcccagaa acaggatcag catagatcat acgcagattg tacagtgaaa ggaagtgtgc 300 ttcgccatgt tctagctctt gctgatgacg atggtgggct acaagcatgt gaagatagga 360 gattgtgatc tcctggtgct ccagtacaca gaatttgtgg agaaagctga gcaagcccag 420 aagacgatct tcttgaattt taactacaag agaggtggtt ccttggatat attgattttc 480 tctccaaatt ttaaggcatc tcgatttctc gaattttaga gattcgactt ctcgttctgg 540 tacttaagaa aagcaagatc tcgttttctc tgattttcaa aaaaggcctt cttgtcctct 600 cggaactatt tctcggattg accattcgcc acaagctaga caggctgggt gcgtacttct 660 tcttccatat aaccccatct ccttctatgc gaagattctt atgaggtatc ataatttcaa 720 caaaaacgat aataacaaaa atataataag taaagttaca taagtcaatg caataatagt 780 tcgcttgctt tctcaaaagc gttaagactg gccgcccttg cagttagttc cggtagacag 840 ttccaatccc tgatggtccg cgggaagaac gatttttttt gtgatagttg gttcttgaag 900 gtggcacttt gtagctttgg ctattcatat gcctgcttat tctatacatc ggcgggactg 960 ttggcaggcc atcagtgaca acaaggccat ggtgtatctt gtagaacatc aggagccttg 1020 ctctctttct tcggatttct agtgaggacc aacccagata attgagcatc tcactcacac 1080 ttgctgttct gtcgtagcga tgaagcgcaa accttgctgc gcgacgttgt accatctcta 1140 ttctgatgat gtttgtcttt gtgaatgggt cccatacagt acacacatac tcaaggtatg 1200 gacgcactac agcgaagtaa gcagacgtct ttagcttggg ggagcctatt ctcaggttac 1260 gccgaaggaa accgagggtg ctgcttgctt tgttgcagat gttgtttata tgcttatcca 1320 cctcaagtct gatgttaggg tgaccccaag gtattttgcc gagtcgacag cacacatggt 1380 tttgccgtga aaagtattgt gtgtaggttt ttgcttgcgt ccaaccctta agatcttaca 1440 tttagctggg tgaaactcca tgctccattg tttctcccac atggctaatt tgtctaggtc 1500 ctgttgcaaa gtgaaggcat cctcggtaga cttgatggtt aaatatacga tggtatcatc 1560 tgcaaagagt ctcacggagg argtcagatt gtctgggaga tcgctaatgt aatagaggac 1620 atgggcccaa tacagagact tcgggtaccc cagagaggac gtctacaayt tcagattatt 1680 ccccgtcaaa caccaccttc tgcttccttg cagataggaa ggacttaatc cactgattgg 1740 ttttaacaca aacgccatag tgctttaact ttgatacaag gagtcggtga tttcccttgt 1800 caaatgcttt actgaaatcc atcaccaaaa cgtcgatctg attaccttca tgcatattgt 1860 ccaccaacga gtgtataaaa ccaagaagct gtgtttcaca tgatcgtagt gctctaaatc 1920 catgctgctg tctctcctac agtgctttat aaaggaccag aaacgcttca tcccctagaa 1980 ttcaccttct gaattatgag ttgttgttat acgtgtgccc aatattcttt ccttgattct 2040 gactggattc ttcttacagc atctagcctg gaagagttgt atttgtatct gttgacactc 2100 tctcatggtc aggcaagagt cgaaagagac ttctctgtaa atgtcagttg aaaaccttaa 2160 taaagaaact tattgaaagt tgttcacaat cgtgggcttg ctgatctaga tataagtaag 2220 gcgctgctag atgcggcaag tcaagggagg aaacattaga tccaatgtca tgaagactag 2280 agaagggcca aggagaagat tgttgtaagc tgtaagcgaa aatgccaaga agaactagag 2340 aacaagtgaa actgttcaaa gggcacaact aggcctcctc actaagtcga ttgcactgcg 2400 aatctgtgct aaggaaaagc aaaaggcttt gaaaaaagaa agttttgaaa atttgaggat 2460 ctcacccaaa gttgaaaatc tgtaggcgaa cgtttgcttg aaatcactgt ttaataacag 2520 tctattttcg tattgaaaat aaacaatgta caattgataa aagctttggt aagacttgga 2580 aaagtatatt tgccctctat tgtctctatg aatttatcgt ttcactagtc cttgaatttc 2640 tacaaaaagt cattgaaaaa gtccttaaaa gtccttgaat ttcatttgtg gaaaattgta 2700 cgaaccctg 2709 // ID TE-5_NV repbase; DNA; NEM; 300 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE TE-5_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP542; TE-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-300 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-300 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-300 RA Kapitonov V. and Jurka J.; RT "A family of TE-5_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (25-FEB-2011). XX DR [3] (Consensus) XX CC This is a family of transposable elements. A few copies are CC inserted into other TEs. There is not enough data to recover the CC complete sequence of TE-5_NV. The 99-bp 5'-terminal part of it CC forms minisatellite DNA. Originally, this family was reported as CC the NVREP542 unclassified transposon [1,2]. XX SQ Sequence 300 BP; 73 A; 75 C; 74 G; 78 T; 0 other; tatcctcacc actccctatt gtcatgccac gggtatacta agttatggga agcacccgct 60 cctggctatg gcaaaagggt agcgatgagg gtagttacat gctagagtgt gtgcaccgtc 120 accaggggag gtgggtgggg ctcctttctc ccactgtctg cagtctcggc aaacgtgacc 180 cagaatgagt caggacatta tcattatata tcccaggtac acgtgggtat ccacatccct 240 agggactatc ttattggata actctagatt accccgtgac attccaatta cgtaagtagt 300 // ID Mariner-4_NV repbase; DNA; NEM; 3497 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-4_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Pogo group; TA TSDs; Mariner-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3497 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3497 RA Kapitonov V.V. and Jurka J.; RT "Mariner-4_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 613-613 (2007). XX DR [2] (Consensus) XX CC This transposon belongs to the Pogo group of the Mariner CC superfamily. Mariner-4N1_NV is a family of non-autonomous Mariner CC transposons derived from the autonomous Mariner-4_NV. XX FH Key Location/Qualifiers FT CDS 1050..2681 FT /product="Mariner-4_NVp" FT /note="transposase." FT /translation="MSSVLFCKSCKAETKYLCLICERAVCNRSECAKPLPE FT ETPNWKSGSRVSACWSCTTSSSHVDGENNKESVNTEADGNSKAKSRKRARE FT TTAPKRNCLSLKQRVELINYAKDHPNEGYRKVAEHFGVGRTQAQKIIKESK FT AILAQYESNVRPSKQKRIRTETYQNVNDALWDWYTVCRLSNVPVSGPMLQE FT EALIIAEKLGVDGFTASNGWLQCFKEHYNLQRMATAGEDGDVSSETLESWN FT ERVREITRGWKPENVWNMDETGSFWKGLPDSSLNERGKRCNGGKSAKQRNT FT WAFFANSTGEKEDPIVIGNAAKPRCFKNMKNLKRPYGCWYYSNPKAWMKSE FT IMEEVLGRLNEKLKKKSRKILLFMDNAPCHPQSLADSFSNITVKFLPKNTT FT SKTQPLDAGIIANWKAKYKKKLLRYVCSKVDGEQTASDIAKGINVAMAIEW FT GKQAWDEVSPDTIVKCFKKTKLFPEEMEEEDDPFEGEDELPALQELLNKVG FT GSCDASTFLSNEEEIPVCLPLVDALNPHWREDLREDLHDETNSVSSRR" XX SQ Sequence 3497 BP; 1060 A; 784 C; 803 G; 850 T; 0 other; cagtcgaacc tctattaagc ggccctctat tgagcggtca ccctctattc aacggtcatt 60 taccaaagtc ccgaattttc ccccttatgt ttactgtaaa tttgacctct attgagcggt 120 cacctctatt aagcggacgc ggtcaccaaa ggagggtccc aattggttga tttcattgtt 180 ttcacctcta ttaaacggtc atcatcaata tttgtcagca tgacaacaga tagtgcacgt 240 catatttcgt catattttta actgtctaat ctaattacta tggctaatcg tcttgtgaga 300 cttgtgtggt cttgtgcgga ccagtcgcat caaattcctc gattaccaat ttccgcttta 360 gccagctaga agaaaaactg tcaccttcaa atatgtattc acaaggaatc tcgagtccat 420 agccaccacc tctgttcacc cacttccctt tgactacgac tttcccacag ttcgtaggtc 480 tcttgagata cttggtaacc cacgttgaca tcagtttggg aatatgcccg ataacttcgt 540 aatcgtcaac tagagtattc gggtgaccgt ctccatccat caccgttttg tcggcttttt 600 ctcttacgat tgcaacagca ttcggatcct ttatgttagt tggttcccgc ataagtttgt 660 aaacatcttc tagtgctggt tcccactcag tcatgtattc atggtatccc cgaatgaatg 720 aatcaacctt aacaactaga gccatctcga caagcttgtg tacaattcaa tgtgaccaaa 780 caagcctaca cgtctaatta tcacattgca cggactcagc aggctacggc ctactttgca 840 cacgtgtatt gctcaaatta cagataacag cataacaaca aagaacgaaa ccactaggga 900 actctactga gcgtgagaaa aaaaaaaacg acaaaacaca caaaatttca cagaattcaa 960 gcttttgtgg tgaactccct gtgttttcgg ccgtcaatct tatagctaaa ggtcggacga 1020 tgtaaactga cacgaagcag cagtgaaata tgtcttctgt gctattttgc aaaagttgca 1080 aagcagaaac caagtacctt tgtttaatct gcgaaagagc cgtatgcaac agatcagagt 1140 gtgctaaacc cctgcctgag gaaaccccta actggaaatc tggttctcgc gtatcagcgt 1200 gttggtcatg taccaccagt tccagccacg tggacggtga aaataataaa gagagtgtca 1260 ataccgaagc cgacggcaat tccaaagcca aatctcgaaa acgagccagg gaaactacag 1320 cgccaaagag gaactgttta agtttgaaac aaagagtcga gttgattaac tacgcgaaag 1380 atcatcctaa tgaaggctac cgcaaagtcg ctgaacattt tggtgtcgga aggacgcaag 1440 cgcagaaaat catcaaggag agtaaggcaa ttctcgctca atatgaaagt aacgtccgac 1500 ccagtaagca aaagaggatt cgcacagaaa cctatcaaaa tgtgaacgac gctctatggg 1560 attggtatac agtttgccga ttatccaatg tcccagttag tggtccaatg ttgcaggagg 1620 aagccttgat tatcgcagag aagttgggag tagatggctt taccgcctct aatggctggc 1680 ttcaatgttt caaagagcat tacaacctgc aaagaatggc cactgctggc gaagacgggg 1740 atgtgagttc ggaaacgttg gaaagctgga atgagcgagt aagagaaatc acaagaggat 1800 ggaagccaga gaatgtgtgg aacatggacg agaccgggag tttttggaaa ggacttccag 1860 actcaagttt gaatgagaga ggaaagcgct gcaacggagg aaagtcggcc aagcagagaa 1920 acacgtgggc attttttgcc aactctactg gagagaaaga agatccgatt gttatcggaa 1980 acgccgcaaa gccccgatgt ttcaaaaaca tgaaaaacct caaacggccg tatggatgct 2040 ggtactattc caacccaaaa gcctggatga agtcagaaat catggaagaa gtgctagggc 2100 gattgaatga aaagctgaaa aagaaaagta gaaaaatact gctgttcatg gacaacgctc 2160 cctgtcaccc ccaatcactt gccgatagtt tctcaaacat cactgtcaag tttctcccca 2220 agaatacgac atcaaagacg cagcctcttg atgctggcat catcgcaaac tggaaggcga 2280 agtacaagaa aaagctactg aggtatgtct gctccaaagt tgatggagag cagactgcca 2340 gcgacatcgc caaaggtatt aacgtggcta tggcaattga atggggaaag caagcctggg 2400 acgaggtatc gcccgatacc atagttaaat gtttcaagaa aacaaagttg ttccccgagg 2460 aaatggaaga ggaggatgat ccctttgaag gcgaggatga gttaccagcc ctacaagaac 2520 ttctcaataa agtgggcggt tcctgtgatg cgagcacgtt tctctctaac gaagaagaga 2580 taccggtttg tttgccacta gttgatgcct tgaatccaca ctggagagag gacctacgtg 2640 aggacctaca tgacgaaaca aattcagtgt caagtcggcg ctgacgtaca ggtcgttgga 2700 gatgacgacg atgacccaga gctaaaagaa ccagccatta agacggtgct gcaagccgac 2760 cggctagcgg agcaactcaa agactttgcc caattttatg gacacgagca gctttcgctg 2820 gcgttatgta aagtaaatga gttactttac gagatgaagc tatcctcacc aaaaacacaa 2880 aaaagtataa ccgacttctt cccgtcctcg tagtccaata gtggacttcc gtcgataata 2940 tcgacggggg agggacgacg acggcgcaga tgctggattt cagcgcgcac taccatattt 3000 ttcttttagc gtgcggatat ctaggtgatg ttacacgcac cgccgttgcg cggaaaaaaa 3060 cgacgcgtgt aacagggtcg gatttgtgag attttgggta cggcaacgcg ctgcgagttt 3120 ttgattcgac ttccaaaatc gcgcgaacgc ttaatgacgg atatcgacgg aaacgacgcg 3180 tgtaatatca ccttaacgca ctcatttact ttacataacg ccagcgaaag tagctcatgc 3240 ccattgaatt gggcaaagcc acaagagccg taaaaacaaa ctgactaggc ggtttcaaac 3300 atttctggat caaattggaa tgcaccaggc cccgtcttag ggctaatatg attgttactg 3360 ttgtttatta taataaaaag ttcttacgta taattacagc ccgatttacg ctaatttagg 3420 ggcgaaaata gcgaaacctc tattaagcgg tcactaagct aagtcccgag ggtgaccgct 3480 taatagaggt tcgactg 3497 // ID DNA-X-8_NV repbase; DNA; NEM; 495 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-X-8_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP230; KW DNA-X-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-495 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-495 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-495 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~87% identical to the consensus. Target site CC duplications are not clear. XX SQ Sequence 495 BP; 146 A; 102 C; 115 G; 132 T; 0 other; aagcctcgat caaacggaga tgagagctga tgagagtcga tgagagttca gctctttcta 60 gctctcacag ggttccgatc aaacggtctt tgagagttgg tgagagtggt caaacaacca 120 gcccgtgcta ctctcatgta cacaagcgcg cgctgctcac gtgtcctttc aaaggaaaaa 180 cgagttcaat tttcgggggg aaatgaacat aagattgagt tttggaattt gaaataatta 240 tttgacttca ggattaaaaa ctgaatcggg aattacacgt taaattccac tttttgtgaa 300 aactgctgac cgaaatactc tcatcaactc tatcattcgc gcgatcaaac ggcgccaact 360 ctgatcaact ctcatgtcga atttgaacat gttcaaagtg aatgagagtc agtgagagtc 420 gatgaggtga gtgcagtcaa acggacatga aagttggaac tctcatcgac tctcatctcc 480 gtttgatcga ggctt 495 // ID CR1-7_NV repbase; DNA; NEM; 3554 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-7_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3554 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3554 RA Kapitonov V.V. and Jurka J.; RT "CR1-7_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 401-401 (2007). XX DR [2] (Consensus) XX SQ Sequence 3554 BP; 1065 A; 811 C; 693 G; 985 T; 0 other; tgctgtggtt tgctttattc agagctgaaa atggagcaaa tttaagggca atatcaccgg 60 attttgaagg gtttctatcc aagttcaagc atggctctgt ggtcactcaa ccaggcacag 120 tcgacattgc ttttgcatca attaaatcat cgtcacgaca ccgttacgca ttaccatcac 180 gattaaatct gggtacttcg ctacgagtca cacaattatt gctcataatt gcttccgact 240 gctcattaat gaaccgtggc cccgtcaaaa ttccatgtgg agcttgtgga aagcctacta 300 agtcgaatca aaaggcaata tgctgtgaca agtgcggata ctggttgcat gttaagtgta 360 tatacagtat atgtcctgtg aatcgtacca gagatacgtt aatgactcga aactaacttg 420 gatctgtaat acatgcatgt tcccaaattt ttcctcggga tatttcttta atgacataca 480 tgtagccgat aataacagct atgcacttct tgctgactca tcctcagaag acatatcgat 540 cacgacaaat tactccgagc ttccgtgttg tatttcatcc agcactccgg tatggtctac 600 gtctcgttct actcgaaatt cttcaaaact atcgtgcatg gagattaact gcaatagtat 660 caagagcagt gaaagagcag ccatttttgc tagccatgtc tcagctcata aaccagatat 720 tatatttggc tgtgagtcaa agttgtctcc tgaagatact acatcggcga gttttccatc 780 agattataac gtctttagaa aagagcgatc tggaagtgat ggaggaggac tttttattgc 840 tgtaaaacgc gacattccat catacgagct accaaccata gccacaaacc cagaggatga 900 atctttgtgg gcggttatac gctgctccaa taaaaaaact gtttacattt gcgcgttcta 960 taagcccccg gaagctccta gtagccgctt ggaccacctg caagagtcta tttttaaggt 1020 tttctcgcaa aacaacaagt ctcatccgaa tatcgtgata agtggtgact ttaactgtgg 1080 cgacatagac tggcaaagtg atccaccatc tcctacaaat catgtaacag cagctatgat 1140 gcagaaactt ttagatctga tttcaaacaa tgcatttact caatttgtca caaaaccaac 1200 acgtccagct tctctaaaga ccttggatct tgtgttatca tcctcaccag ctcttgtatc 1260 tgatattact atccacccag ggatgagtga ccatgatatc gtcaagttca gcattaacac 1320 cagagcaaaa cgtatcaaga gtcctcctca taaagtttac ctctacaaga aaatggacat 1380 tgaggctctc caacaggaaa tggctagagc tgctgaagaa ttctcccgcc attgcacaga 1440 aagatcctta gaagaaaatt ggtccttctt tgaagacagg ttgaaatccg cagtagagac 1500 acatattcca cacaagttta caaagtcaaa aaagtccctc ccatggataa ccaaatcagt 1560 aaaaagacaa atgcgtaagc gggaccgcct cttgtccaaa gcactgaaaa ccaacaacaa 1620 aaattccaaa gcctggtgtg cctatcgctg ccagagaaac tttgtggtga aattacttaa 1680 atcatcttat aactactacc taaatactgt aattggtgga agtttggaat caaaccctaa 1740 aaaattctgg agccatgtca aacactctag aacagaaagc tgcagtatac ctactttgcg 1800 tcaaggtgac tcaatgtata tttcggataa ggacaaagct gaggcattaa ataagtattt 1860 tgagagtgtt ttcacacagg acaatggtgc ttctcctgac cttcgtccta ccacatgtac 1920 ttcaatccaa gatatcatat ttactcaggc tggtgtccac aaacaacttg ctggactaaa 1980 tgtatccaag agcagtggcc ctgatggtat ctcaccccgt gtgttacggg atctggcaaa 2040 ggaactttcc gggatgctgt gctttatttt caaccaaagc tacaatgagg ggaccttacc 2100 agctatttgg ctaaatgcga tggtcgtccc aatacataaa aagtcagcta aagatcttcc 2160 ggaaaactat cgccctatct ctcttacctg tatcagctgc aagatcatgg aacacattgt 2220 tctcagccat ctgaacaaac acatatcatc taacaacata ttatcaatat ttcaacatgg 2280 ctttcgtgcg ggtttgtctt gtgagaccca actagtcctc acatttcatg actgggcaac 2340 cgtgctaaac catcatggcc aagtggatgc tctgctccta gactacagta aagcttttga 2400 caaagtgtca cacccaaagc ttttgaaaaa gctctcttat tatggcatca ggggaaaaac 2460 attggcttgg atatctggtt tcctaaataa gaggtcccag tatgtggcag tcaatggcac 2520 ccactctgat aaagtacaag taacatcagg agtaccacag ggttccgtac tgggaccgac 2580 cctgtttttg ttgtatatca acgatatctg taaagcatca aattctcaaa tcaggctatt 2640 tgcagatgac accatcatat accgcccaat cacatccatg gatgaccata ctgcacttca 2700 agatgatctg gataatgtac ttgattggtc agcagcttgg cagatggagt ttaatgtaac 2760 caagtgttac ttgttgtcag tcaccaagaa gcggagaccg tcatgttatc agtatacagc 2820 aagtacggag tcctttgccc aagtatcaga tcaagattac ctaggagtac ggtgtaatga 2880 gcaactgcgc tggggccctc actgtgccaa aatagctaca aaggccaaca gaacactggg 2940 tgcgatcaga agaactttaa aaccctgtgc ccctgcagtt aaggaacgtg cgtacctctc 3000 ccttgttaga ccgatgcttg agtatgcgtc aacatcttgg agtccctaca ctgacacaga 3060 tgttttgcgg ttggagcaag ttcagaagaa cgctgctcgt tttgtctgca acaattatga 3120 ctaccaagca agatcatctg aactggttaa ccagctaaac tgggacacat tggaaataag 3180 gcgactttac catcaaatag tattactgta taaattttat aataatctcg tggcttgtcc 3240 tctccctagc tgtgtcgttc cgacaaatcg atccactcgg aggcactcac ttagctttca 3300 acaattgcac tcgaatattc tttcctttaa ttattctttt tttcctagag caataagagc 3360 atggaattta cttcctgata atattgtaaa cctaagtaat ctggagtcct ttaaaacagc 3420 agctttgcca gccatcaggc aactaaaggt gcctccgcat ctccgccggc tgtaaactga 3480 ccgtgccctc cccagtatta gcgtaagcta ctttatacta ttgtataggg gagtaattta 3540 ttaaagtatt aaag 3554 // ID Mariner-8_NV repbase; DNA; NEM; 1390 BP. XX AC . XX DT 07-MAR-2011 (Rel. 16.03, Created) DT 07-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Mariner-8_NV DNA transposon - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW nonautonomous; TA TSD; Mariner-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1390 RA Kapitonov V. and Jurka J.; RT "A family of Mariner-8_NV DNA transposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (07-MAR-2011). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 134..1237 FT /product="Mariner-8_NV_1p" FT /translation="MSWTNQQKIFSLETYFATKSYQSAQIQFRKRFHCRNF FT PSKSTIVSWIKKFREHGTVVDLCSKATGGTYSGRKKSARTEENIAAVRDSV FT GRSPRKSVRRRSQELGMTRESLRRVLTSDLHLYPYKIQIKHKLTDADKEKR FT VTMCEWFCNVLENDENFLENVWFSDEAHFLLSGHVNTKNNIFWGSKVPEEV FT LQRPLHSVKCTAWVAMSKHGIIGPFWFEDDDGRSQTVNKERYIAVLNKYWA FT SLGRRRGVVRASQWFQQDGATPHTANETIAWLRQRFEGRLISRRCDVEWAP FT HSPDLNPPDFYLWGFLKDNVYQGNPQTIEELKTAITAKIRAIPKEECIKVI FT QNFARRVQVCLQRNGGHLEHILGKP" XX SQ Sequence 1390 BP; 434 A; 274 C; 334 G; 348 T; 0 other; cagggtgacc caaaaagatg cgtacccata ttttattcga taaaaaatcc attttttaac 60 gaatgtcttt tctgttgcag gacgtgaaag gtgaacctat ggatgatgat ttgcagctat 120 agttgccctg aaaatgtctt ggacaaatca gcagaagata ttctccctgg agacctattt 180 tgcgacaaaa tcataccaga gtgcacagat tcagtttcga aagcgtttcc attgtcgcaa 240 ctttccatca aaatcaacga ttgttagttg gattaagaag ttcagagagc atgggactgt 300 agtggaccta tgttctaaag ccacaggggg gacttattca ggcaggaaga agagtgcaag 360 gacagaagaa aacattgctg cagtgaggga ctcagtagga cgcagcccta ggaaatcagt 420 gcgtagacgc agccaagaac tcggaatgac aagggagtca ctgcggcgtg ttcttacgtc 480 tgatctgcac ctatacccat acaagatcca aataaagcac aaattaactg atgctgacaa 540 ggaaaagcga gtaacaatgt gtgaatggtt ctgcaatgtg cttgaaaatg atgaaaactt 600 tcttgagaac gtttggttct cagatgaagc ccattttttg ctttccgggc acgtcaatac 660 caaaaacaat attttttggg gttcgaaggt tccagaagaa gtgcttcaga ggccgcttca 720 ttccgttaaa tgtactgcct gggtggccat gagcaagcac gggatcatcg ggcctttttg 780 gttcgaagat gatgacggcc gatcccagac agtcaacaag gagcgctaca tagctgttct 840 gaacaagtac tgggcatctc tgggacgccg gagaggggtt gtgagagctt cacaatggtt 900 tcagcaagac ggggccacac ctcatacagc caacgaaact attgcttggt tgaggcagag 960 gtttgaaggg agactcataa gcagaagatg cgatgtggaa tgggccccgc actcaccaga 1020 tcttaacccc ccagattttt atctgtgggg tttcctcaaa gacaatgtat accagggaaa 1080 tccacaaaca attgaagaac tgaaaactgc catcacagca aaaataagag ccatcccgaa 1140 agaggagtgt ataaaagtga ttcaaaactt tgccagacga gtacaggttt gcttgcaacg 1200 aaatggtgga catttggaac acatcttggg aaagccataa attgactaaa aattgacaga 1260 aatagctgaa actctggtga atggtcttcc ataaactaaa taatgtgtgg ttgtaatttg 1320 aaataaatag ctttttaatc aaagccacaa ttgaaatttt catgggtacg tatctttttg 1380 ggtcaccctg 1390 // ID DNA-8-2A_NV repbase; DNA; NEM; 1572 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-8-2A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 8-bp TSD; KW 33-bp minisatellite unit; NVREP286; NVREP85; DNA-8-2_NV; KW DNA-8-2A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-434 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-434 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-434 RA Kapitonov V. and Jurka J.; RT "A subfamily of DNA-8-2_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 88-94% identical to the consensus. Two parts of it CC were reported originally as the unclassified NVREP286 DNA CC transposon and NVREP85 transposable element [1,2]. The lengths of CC the subterminal poly-G and poly-C at the 5'- and 3'-ends, CC respectively, are highly variable (from 4 to 25 bp). This is a CC subfamily of DNA-8-2_NV (see also comments to it). Members of CC this subfamily contain a long minisatellite array composed of a CC 33-bp unit. While the number of this tandembly repeated units in CC DNA-8-2A_NV varies from ~10 to ~100, there are only two copies of CC this unit in DNA-8-2_NV (pos. 90-122 and 123-155). XX SQ Sequence 1572 BP; 340 A; 426 C; 343 G; 463 T; 0 other; cccggggggg ggggggtact cccttatatg ggctatacgg ggacgtgccg ctggacaggg 60 tatggttttt gacctctctg tcctaaacag ggtatacatt tcaggcctct ctgtcctgaa 120 cagggtatac atttcaggcc tctctgtcct gaacagggta tacatttcag gcctctctgt 180 cctgaacagg gtatacattt caggcctctc tgtcctgaac agggtataca tttcaggcct 240 ctctgtcctg aacagggtat acatttcagg cctctctgtc ctgaacaggg tatacatttc 300 aggcctctct gtcctgaaca gggtatacat ttcaggcctc tctgtcctga acagggtata 360 catttcaggc ctctctgtcc tgaacagggt atacatttca ggcctctctg tcctgaacag 420 ggtatacatt tcaggcctct ctgtcctgaa cagggtatac atttcaggcc tctctgtcct 480 aaacagggta tacatttcag gcctctctgt cctgaacagg gtatacattt caggcctctc 540 tgtcctgaac agggtataca tttcaggcct ctctgtcctg aacagggtat acatttcagg 600 cctctctgtc ctgaacaggg tatacatttc aggcctctct gtcctgaaca gggtatacat 660 ttcaggcctc tctgtcctga acagggtata catttcaggc ctctctgtcc tgaacagggt 720 atacatttca ggcctctctg tcctgaacag ggtatacatt tcaggcctct ctgtcctgaa 780 cagggtatac atttcaggcc tctctgtcct gaacagggta tacatttcag gcctctctgt 840 cctaaacagg gtatatattt caggcctctc tgtcctgaac agggtataca tttcaggcct 900 ctctgtccta aacagggtat acatttcagg cctctctgtc ctaaacaggg tatacatttc 960 aggcctctct gtcctaaaca gggtatacat ttcaggcctc tctgtcctga acagggtata 1020 catttcaggc ctctctgtcc tgaacagggt atacatttca ggcctctctg tcctgaacag 1080 ggtatacatt tcaggcctct ctgtcctgaa cagggtatac atttcaggcc tctctgtcct 1140 gaacagggta tacatttcag gcctctctgt cctaaacagg gtatacattt caggcctctc 1200 tgtcctgaac agggtataca tttcaggcct ctctgtcctg aacagggtat acatttcagg 1260 cctctctgtc ctgaacaggg tatatatttc aggcctctct gtcctgaaca gggtacataa 1320 ttttaagcaa ggctgtcctt aaacagggta ccgatttggt tgccttgcta aaactcgtaa 1380 ccgctgatcc cgccgcctga tgcttgccgt ctgattgcct tgcttgtcct aaacagggtc 1440 ctaaaatcaa gggtgttgtc ctaaacaggg tatggttttt tcagaatttt tgtcctaaac 1500 agggtcaggt ttcaaaaccc ccagcggcac ccctataccc aaacataggc tgagtacccc 1560 cccccccccg gg 1572 // ID Gypsy-36-I_NV repbase; DNA; NEM; 5110 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-36_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36-I_NV; KW Gypsy-36-LTR_NV; Gypsy-36_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5110 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5110 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-36_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 503-503 (2007). XX DR [2] (Consensus) XX SQ Sequence 5110 BP; 1522 A; 1595 C; 1085 G; 908 T; 0 other; tgataaagaa ctacctacct cccaaagaca ttgaggaact cagatacagg ataaccaagc 60 cgaaaagaag cagaaacagc ccacaacaac agcaaaacgt caacacgaaa atacggccgc 120 catcttggat ttcactgaag ctccaactac aaaccaaaca agccttttaa aagccaagaa 180 accatgccaa aattcaaatg ccccttccca ggctgtgaat atgaaactga agatgtcaaa 240 gatgaactag cagcagtttt aatctcagtt cattccaatg gaacccacat aaccaaccaa 300 accccaagca cccccaacca aacagcaaaa gtggagaagg tccgacggcc cacagtttcc 360 agcgccggaa cgagtgagga atggtcttat ttcatgacta gatggcaaga ctacgtcgaa 420 gccacaaaga taacaggaaa agacaagact atccagcttc tggagtgctg tgatgaacat 480 cttcgcaaag acctcacacg aaacgcaggg gggtccctaa caaacaaaag tacagcagaa 540 gtcctagggg ccataaagaa actggctgtg cgtgaggaga atgccatggt ggccagagta 600 caacttcaca acatgcgaca ggacagagat gagcccatcc gaagtttctg cgcacgacta 660 cgtggccagg caagcgtttg caaatttctc atcacctgcc ccaactgcaa cacagaggtc 720 aactacacag agaacatact ccgtgacgtt gtcacccgcg gtctggccga tgaggaaatc 780 cagctcgacc tccttggtga aaaagatcaa gaaatgtcac tcgaggatgc cctaaaattc 840 attgaggcaa aggagtcggg gaaacggtca gcggggcgac tactacaaac acaaggcgcc 900 gaggccattc gaagccaata tcgcaacatg aagcaaagcg aacacaaaaa tcgtaaatcc 960 tcagaccaac atggtacggg aacctgcaat tactgtggca aacagggcca cggtgtcaag 1020 gccccaccca agatcaggaa acaggaatgt cccgcatatg gaaccacctg ccagttatgt 1080 ggtcgtgcga accatgtcgc aatcatgtgc caaaacaaag acaaaccact tggtcaaagc 1140 ccccaccacg tgaccgatgc aggaaaacac acagaaaacg cagtcttcga tgccctctgc 1200 agtgtgaaca gctccagcga tgatcatgcc atccacggca tctccctgga ccatcacctc 1260 tacgacaacc ttagcaatcg ctggattcgt agtgcatcac agccacaacc ctacatctcg 1320 cttaccgcca ccatacagcc agacgactac accgccctcg gttttcaccc agtgactaac 1380 aagccaaaat cagcccaact acccgccatg gcagacaccg ggtgccaaag ttgcctcgcc 1440 agcttgagtg tcatccgccg cttcgggcta aatgaagcag atctcatacc agtaactaca 1500 cgcatgcatg cagccaacgg cactggcatc ccaatacttg gagccgtaat cctacgcctg 1560 acaggcaata accagcctgg attggaagcc aaaacaaggc agatcgtcta cgtcaccaat 1620 gaatctgacc gcctgttcct aagtcgggaa gcatgcaaag acctcgggat tatctcagag 1680 agctttccta cggttgggga aagcctatat cacccaacca gcgacagcgc cgccatctcg 1740 tccaacaagg ggaacacaat ggacacaccc gacaactcat gcacctgccc acgacgccag 1800 atgcccccac ctaagccaac ggagccacca ttccctgcaa cagaagacaa cagagcaaac 1860 ctacaggaat ggctcctcga ttattataag tccagcacat tcaacacctg cgaacaccaa 1920 caacttcccc taatggatgg cataccaatg agactcatgg tcgaccccga agccgaaccc 1980 gtcgcccatc acacccccat accggtaccc ctccactggc aggaggaggt gaaggccggc 2040 ctagaccaag acgtggcact cggcgttctt gagcctgtcc cagtcggcga accagtcaca 2100 tggtgtcacc gcatggtagt ctgtgctaag aaaaatggaa agccccgccg gaccgttgac 2160 ttccaatcac tcaacctcca tgccacacgc gagacccatc acacccagag cccattccac 2220 caggcacgct caatacccta caacacgaag aaaacagtct ttgactgctg gaatggatac 2280 cacagtgtgc cactacacca ggatgaccgc cacctcacca cattcataac cccctgggga 2340 agataccgct ataagacagc tccccaggga tacatcgcct ccggtgatgg gtactcccga 2400 cggttcgatg agattgtctc ccacgtgcca aacaagacaa agtgtatcga cgacactctc 2460 ctatgggcgg acgacatcaa cagcagcttc caccaggcag tcaattggct tgacctctgt 2520 ggtcgacatg gcatcacact caatccagac aagtttgtct tcgcagctga cactgtcgag 2580 tttgccgggt ttgaaattac acgtaacagc gtacgccctt gccagaaata cctggatgct 2640 atccgaaaat tccccacacc agttaacgtc accgacatgc ggtcgtggtt cggactgatc 2700 aatcaggtat catatgcctt cgctgcaacc gaacgcatgc tgccattccg agcatcactc 2760 aagcctggca cccagttcac ctggaccaaa gagcttgacc agctattcga agaatccaag 2820 tctataatca tcagagaaat cgaggacggc gtccgcatct ttgacaaatc aaagcctaca 2880 tgtctagcaa ctgactggtc caaaactggc atcggctttt ggctacttca aaaacactgc 2940 aaatgcccct ccacggcccc attctgttgt cgcagtggat ggaaagtgac attagtaggc 3000 agtcgcttca ctcacgcagc agaatcacgc tacgccccaa tcgaaggtga ggctttggct 3060 gtggccgatg ctctggacaa ggctcgcttc tttgtcctag gctgtagcaa cctaattgtc 3120 gccgttgatc acaaacccct attgaaggta tttggtgatc ggtcccttga tgaaattccc 3180 aacagccggc tcaggaacct caaagagaag accctccgtt acaagttccg catggtccac 3240 atccctggag caagacacaa agctgcggat gccatctcac gccacccaac gggctcaaca 3300 acccctgaaa tgatgacgct gcctgacgac atagctacca tcgatgcctc caacagccct 3360 cacccagcca acgctgccct cgcaagcctt cgcactaggg agccaccaga agaatcctgc 3420 tcctacggga tcgacaaaga gctggtatcc tcagccacat ccaccctcaa caccatggcc 3480 gttacctggg agacggtgaa actagaaacc accagcgacc caaatctcca ctccctgacc 3540 gccatcattg agtccggctt cccagaagcg cagcacgacc tcgccccagc actccaagaa 3600 taccacagat tccggcacga cctccacacc atcgatggag tcatccttta caaggatcgc 3660 atcgtcattc ccccaaccct acgagaggtg atacttaaag cactccactc tgcacaccaa 3720 ggcgtgacat ccatgactgc ccgcgccgag tcatcagtct tttggccagg aatcacacct 3780 gccattgtcg ccttacggga acgatgctcc tactgtaacc gcataacacc ttcacagcca 3840 agcgccccac cctacccacc aatactgcca gcctacccat tccaatgcat ctgtgctgac 3900 ttcttccact acaaaggcag cacttacctg gtagcagtgg acagatactc taactggcca 3960 atcgtcgaaa aggctcgtga tggctccgcc ggcctagtag aatgtctgag gcgcaccttc 4020 tgcacctttg gcatccctga tgagtgcgca agtgacggtg gaccagaatt tgtcgccaat 4080 cctacacagc agttcctcaa ggagtgggga gtccaccacc gcctatcctc agtagcgttt 4140 ccccactcca acagtagagc tgaaatagga gtgaaaaccg tcaagcggct catcaccaac 4200 aacaccggcc cacatggtga actcaacacc aatgccttcc aacaagcgat acttcaatac 4260 cgcaacaccc cagacccaag caccaagctg tcaccagcac aatgcatatt cggcagacca 4320 atcaaggatt caatcccgat cctcccaggg cactatatcc cacaccccac ttggcgggac 4380 acccttgccc tcagagaaga agctttaagg aacagacaca tgagggcagc agagagatgg 4440 tcacaacata caaagagact tccccctctt gccataggac accacgtgag gatccagaac 4500 cagacaggcc ccaatccaac acgatgggac aagacaggca ttgtcattga ggtacggcaa 4560 tttgaccaat acgttgtgcg tgtcgacggc tccggaagga taactctccg taaccggaaa 4620 ttcctacgga aatacatccc tgtccaagca ccacagccac cacggatact caacgatgac 4680 ctcaaattca tcagccgagc aacccaagca agaccgaaag aaagcctaac caaactccca 4740 aaaggcacag caacaacaag ccccactgga atttccgtcg aaacacccac acgacctagc 4800 cccccgctca cgagagacac tgggccagga actgggacaa caggcagtga tacaccaacc 4860 agaccaccag aaactgagcc aggatcagcg gaagcatccg aaccagtaag cccagccaaa 4920 ccaccatcca accccccact cgagaagaag atacccttag ccctgaggag gctacaggac 4980 tacaacaaga aaggactact tgaacaatga acacaaacat tagtcaaaag gacacattgt 5040 tatattgtta tgttatatat cagtatttat catccccacc atgcaggaac actaaatact 5100 tggggggaga 5110 // ID Harbinger-N13_NV repbase; DNA; NEM; 844 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP184; Harbinger-N13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-844 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 172-172 (2007). XX DR [1] (Consensus) XX CC Harbinger-N13_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N13_NV CC transposon is characterized by 30-bp TIRs and TWA target site CC duplications. XX SQ Sequence 844 BP; 247 A; 178 C; 165 G; 254 T; 0 other; ggcctagttt aaaggccgca ttaacgtcgc attaaattca gccgtattaa atttttacaa 60 ttttatacat ggttaattcg gcgtctaaaa ccattttata cggccggtcg aattaaatac 120 gggtctgcga gataatacgc ctggtccagg cgcatagtac ggcttaagtc agattggttt 180 tagacgccgt attatccatg cgccgtatag aatgcataag ttattataat gaatgcaaat 240 gtagctaaac cggcaaaata cggctataag acggcgttgg ttttaaacgc cgaattaggt 300 tccagccgta gcaaatattt aattgaatta tgaagtcacg cgaaggatta tccagcggtt 360 ttaaataaag ttttagctaa aacctttcgc ctgtgcgctt tacaacatcg tattgaacat 420 tgtatttatt ggtcctcttc ttttttcgaa gtcaaatggc gacgtaccag aaacccacgt 480 ctcgataaac tcgcaatttt atattcaagc acacagaaca ctaatttcgt ttttgccaat 540 ttgcatgcct gcttttctac tcgataaagc ataatacttc atgtagccat caatatggtt 600 agggtttggg ctagggtcag tatctaggac acactatatt gatggctaca tgaagtttca 660 acccgcgaaa cgagccatgt accgctgtca ttgtgatagc gcaggcacta atcgctagcc 720 cgctagaact aaattattta cctacgccta atttaatacg gcgtctaaaa ccaccgctat 780 atttacgtcg actaaaattc gaattttata cggcgcgacg ttaatgcggc ctttaaacta 840 ggcc 844 // ID Gypsy-31-I_NV repbase; DNA; NEM; 4215 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-31_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31-I_NV; KW Gypsy-31-LTR_NV; Gypsy-31_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4215 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4215 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-31_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 493-493 (2007). XX DR [2] (Consensus) XX SQ Sequence 4215 BP; 1398 A; 1072 C; 923 G; 822 T; 0 other; tggtgccaag aagtgggata gcatccacaa gagcgcacag caagccggta agtggcaaaa 60 gaagaataaa gacaaaaaaa agcgaaaacg tattgtgtaa ttgaaccgta acataatcag 120 tccagacgat ggcagccggg tttacgcctc catgcatgaa ctgggacgcc aaagacatcc 180 cagatgaatt tagaaggttc aaacaatatt gcaacctagt ttttgacgga ccattctcca 240 aaaaaccgga taccgagaga gcttcgtacc tcttattgtg gcatttataa tagttttgtc 300 tgggaaacca agggtgataa cctaagaaga tctgggaaag gtttgagaag catttggccc 360 ccagaacaaa ttttagactt gcgagatatc aattgcaaca gttaaacaat tacccagcga 420 aacaaccgat ggatttgtga cccgatgcag gaatcaggcc gcaaagtgta agtttcgtga 480 ccaggaggaa ataaacgagc gtctcatcga acaactcgtg attggaacta aacatgagaa 540 ggcctagaaa aaagcgatga gttatcctta gatcaggcta tcgacttcgc cagaacctat 600 gaagctactt tagaacatgt tgcacagctt catagcgagc cacaaataaa cgttcatgaa 660 attaaaggaa aatccggaac caagaataag aaatgcggaa actgttcgga gcatgagccg 720 aaaaaatgtc ccgcatatgg ctcagtctgt aataactgct caaaactaaa tcactggagc 780 agggtttgta ggcaaaaatc tcaggaagcg caaaacaagc cccgaaaccc taataatttt 840 ggtagaaaac cggaatcagg gaaaccgcgc caaaatcggc aaggggcgtg tcttcgcact 900 cgaagcggaa gacaatgatt tcgaaagcct ggtgtttgaa acgataaata tcaacgccat 960 tggtccgaat gaaacgcaaa acgaagccct tgtaacacta ggaataacat tgccaagcgc 1020 aagcaaacaa gacacacgac taaaggcgaa acttgacaca ggcgcgcaag cgaacattct 1080 accattgaga atttacaaag gaatgtttcc gcaaaacata ggaactgatg gctaccctaa 1140 gcgaggtgca ctcaccaaat caaacacaaa actaacagct ttcggcggat ctagcaaagc 1200 tcagcttgga atctgcgagt tacaatgcgc acacgagaac aaggcaacaa gcgcacgttt 1260 ctacgtggcc gacgctcccg gacgagcaat aataggactg ccatcagcac tagagctgaa 1320 cctaataacc cttaattgct caatcgagaa gacagcggag accgctgacc ctccaactgg 1380 gaataccgct cacacctctg cacaggaacc catacgtgat cgcgaacacc ttatcaatca 1440 gtacccgcag tgctttgacg gaataggcaa gtttcagggg gaataccaca ttacccttga 1500 tgctaacgtc acccctgtca tccacccgcc acgtcgagtc gccatcagct tgaaggatga 1560 catcaagcaa gagctggatg acatggttaa acaaggcata atagaaaagg tacgagaagg 1620 cgaaccaaca gcatgggtca acagcctcgt gtatagacga aagccaaacg gtaggctccg 1680 gatctgcctg gacccaaaag atctgaacca tcaaacgtga gcaccacgtc actcctacac 1740 tcgaggaaat cctcccaaac taaccggcgc gaaatacttt tgattctcga cgccagaagc 1800 ggctattgga acgtagttct tgacgaagag tcgagctatc tgacgacatt taattcacca 1860 ttcggcagat atcggtacat gcggatgcca tttggcttac gaatgtcaca agatgtattc 1920 caggcgaaaa tcgaccagac gttcgaggga tgccaaggag tcgtagaaat cgccgacgat 1980 atagtcgtgt tcggaaagac cgccaaggaa cacgacgaga accttcacgg gatgatcgac 2040 agatgcatca aaaccggtct caagctgaac cacgaaaagt gctttatcaa aaagcaagaa 2100 atcaagttct tcggagtcat ctgtggagaa gaaggagtca aacccgaccc ttgtaaagta 2160 tcggtactgc aacagatgca gagtccaacg aaccgcaagg aactacaaac atttcttggg 2220 ctggcaacat acatgggccg atttatcccc aacctgagca ctctcacagc tcccttgaga 2280 gaactactga aagaagaaaa tcactttaca tgggatccac ccgaatacca ggtagcattc 2340 gaccgcataa agaagtcaat cagtgacgag gtaacacaca tacttcgaca aatccaagga 2400 aatagtcctt caggtcgatg cctctatcaa aggtatagga gcaactctac tacaagaagg 2460 gaaaccagtg gcattcgcaa gcaagagcct aacagacgcc gagacccgat atgcaaacat 2520 cgagcgagag ctattggctg tagtgtatgg atgcgaacgc ttccatacat acctgtttgg 2580 acactcgttc acagtccatt cagaccacaa gccgctggaa tccatacatc tcaaacacct 2640 tacatccgca ccgccaaggc tgcaaagaat gctcctgaga cttcaaccgt atgatttcac 2700 aatcaaatac atacctggca aggacatgca catcgcggac gcactgtcaa ggctctcacc 2760 cgaagagaaa caacccatca aaggcatgga cgtgcatcaa gtatgcaccc agttcagcga 2820 caatatgctc actcgtatta ctaacgaacc tcgacgatga gctccatgca ctgaaaaaga 2880 ctgtatatga cggatggcca gaaacaatcc agcaagtgcc gcctacagta aaagcctact 2940 ggtcataccg cgacgagatc tctattgacg atgggatcct actgaagggc catcgcatca 3000 taattccatc agccctccag ggcgagattc tcgcaaagct tcactccgcc caccaaggag 3060 ctgagaaaac aaagttgcgc gcgagaacat ctgtcttctg gagaaatcta aaccaggaca 3120 tagataagct tacacagtcc tgtaccacat gtcagaaata ccaacctgcg caatgcaaag 3180 agcctctgat ccaatcagaa ataccaccac gaccgtggca caccatcgcg tcagatctct 3240 tccatatcga caactcggag tttctgctaa tctctgatta ttactctaaa tacccattcg 3300 taaggaagat gccccaggtc aactgcaaga gtaaatctgt gatcgacgcc atgaaacaag 3360 tgtttgccga acacggaatt cctgctgtag tcagatccga cagcggatca caatacacaa 3420 gtgaagaatt cgacgacttc gcaaaggaat acggattcca acacatacca agctcgccga 3480 agcactcacg aagtaacgga ttcagagagc caagtcaaac ttgtcgagaa cgctctcata 3540 aaagcgcgag aaaccaacgc agacctgaac atcgcactcc tctgccttcg cgcgactcca 3600 atcgatagta agttaccatc gcctgctgaa ctcctattgg gcgggaaact acaggacaat 3660 ctaccacgca acataccacg accaagcgac agtgacgaca ctattgaacg actgaaatat 3720 cgacaggaag ttcagaaaca ctattacgac cgccacacga aaccactacc gcgactccac 3780 acaggacagc ctgtgaccgt tctagatcac aagacgatgc aatggaagcc agcagtcatt 3840 acggagaagc tccaggacgt gccaagatcc taccgactaa caacagctac aggaggagaa 3900 cttaggcgca acagactgca cctcagaagt gtcccaccag caacacctaa cagcaacgct 3960 gacgcgaacc agtcgcaacc tgctccccaa gaaccaaaga taactgctga taacccaccc 4020 tgtaacaagc ctccaggagc aacggttaca cgcagtggaa ggatcgtcaa accacctgac 4080 agatttgttt agatgacatt attattcgga ttggaataaa acttatatgg aacggtttgc 4140 atgttggaac attcagaaca ttttttatag ttactgttaa agctttgatt gcatcattaa 4200 tcacggaaag gggga 4215 // ID CR1-4_NV repbase; DNA; NEM; 3568 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-4_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3568 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3568 RA Kapitonov V.V. and Jurka J.; RT "CR1-4_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 398-398 (2007). XX DR [2] (Consensus) XX SQ Sequence 3568 BP; 971 A; 897 C; 699 G; 1001 T; 0 other; gtgataggta accgctgacc atcatggcgg ccagtcacgt ctccctgagc tctgtcatca 60 ttttgttagc tatacgatcc ttgctacttt tcgctcagcc acctattgct aatcgcaatg 120 gcaaagagac gtcattctat atatggagat tttgcaaagt gggtttctct aataggcctg 180 atttcgggaa tcaacatcat tccctgtttc gtccaagacg agacttcacc agaccaaact 240 gctacctcgt tgggcttctg cttctctgcg gagatgttgc atcccatcct ggcccacggg 300 cgttctctag agggaaaagt aattgctgta ccaccgtgaa atgcttgtat atgaattcta 360 ggagcgtcgc taaaaaacgg agcgaactcc aagcactttc cattggcaag gacttaatat 420 tctgtgtgga gtcttggctg aatccaaatt atctggactg cgaattactc cctagttccg 480 cggactacac catccacaga cgggacagac agtcccgtag aggaggagga gtgttcctgg 540 cggtcaaaaa cagtatcgtg agcctccgtc gatgtgattt agaaaccgac gctgaacttt 600 tagcatgcga gctccgtcct aactcacgac gcaagattct ggctatcatt tattaccgac 660 cgcaggacac tgacctagag tatctaaaac aactcaagaa aactctgcgc ctagcttcta 720 aagcgaaata cgatcagtta atagtgattg gcgacttcaa tctctctgag atcgactgga 780 cgacaggagc cgctaaaacc ggcgattgcc tcacaaacta tctctgcaaa attataaagg 840 ataactattt atggcagctt attgattttc caacaagggg aaggaacatt ctcgatttaa 900 ttttgacgag tatcccatcc aaatttcaac acatacacgg attcgatgac attatttcta 960 ccgaccacaa gttgatcagt ttcgaactag acttgaatat ctctaaaaaa acaaagacca 1020 aacgcgttgt gtacaacttc aagcgtgcag actggacggg acttaatgag tcgcttaaga 1080 acatcccgtg ggacctgtgt ttctctcaaa gcgataacat cgattcatca ctcgctaatt 1140 ggactgatct atttctcgcc gctgttaacg agcatattcc gaaatccaaa ccaaggaatg 1200 tgagcgatta cccgtggata gatcacgaac tgcgttcttt gctcaaaaag aaggatgcgc 1260 agcgtaaaaa agcaaacaaa accggatcac tggctgctga aagaaaatac aatgagcttc 1320 gacgcgctgc gaaacaaatg ctttccaaaa agaaaaaaga gcacgccgaa aaactaaaat 1380 ctgttatatc cgacaaccca aagcgtttct ggacatacgt aaaatcatgc acttccaaca 1440 agccttcgcc gaattttttt cgcgatggcc acgccttcgt tacagatacc aagaacatgg 1500 ctaacctgtt aaacagatat tttcactaca tattcagtcc atccgccagc gaggaatttg 1560 ttagcgccca gcctaccaac cgtgagcccg tgttgggtct gggctctatc caactcactg 1620 tccctgaagt actggatgtc ttacgaaatc ttgactccca taaagcctgt ggaacggatc 1680 aaatccctgg tattctgctg aaaaacaccg ctcatcaaat cgcaccatcg ttatgtcggt 1740 tgtttaatct gtcgctgtct cttggatccg ttcccgcgct ttggaaggac gcaaatgtca 1800 cacctgtgtt caagaaggat gaccccaccc tggcagaaaa ctacaggcct atctctcttc 1860 tgtgtatcct gtcaaaagtt cttgaacgct gcgtcttcaa gcgctgcttc aacttcattt 1920 ccccccatat ttaccagctt caacacggat tccttaaggg aaaatccacc gtgacgcaac 1980 ttgttgaagt ctatcatgac atcgtagaca gactagcagg ggggaaggac attgatgtca 2040 ttcacctaga cctttccaag gcctttgaca aggtccctca tcatctgctt atttccaagc 2100 tgcagcagta tggagtcacg ggttctctgc tgaaatggtt tgtgtcctac ctaacgggaa 2160 ggaggcagcg tgttgtcctc gatggtgtgt cctcctcttg gctgccagtg acctcagggg 2220 tcccacaagg atctatcctt gggcccctgt tgttcctagt atatgccaac gatatgccta 2280 actacgtgca gcaaggctca aacatcgctc tttatgctga tgattctaag ctctaccgct 2340 ctatagacac tgcaagttct tcaacctcgt tgcaggctga ccttgactcc ctgtacagct 2400 ggagtctaga gcacggcatg gagtttagtg catctaagtg caaagtggtg cacatgtcaa 2460 agaagcgttc taccaagcgt cctccgtacc cttaccaact atgcggtcgc accctggatc 2520 cagtagcgca ggtgactgac ctcggcgtta caattactaa cgatctgtct tggggtcctc 2580 acatcgagcc tatgtgcgca aaagcaaaca gggtgcttgg actagtgaag cgggtctgtt 2640 ctgacatcct cgacccaact acaagacagc tgctgtactg cacccttgtt aggccccacc 2700 tggagtatgc ttcttgcatt tggtcgcctt cgacaggcaa gcacaaagct ctgattgaga 2760 acgtccagcg tcgagcatcc aagtttattt tgaactatcc cgccgatgtt tcatacacag 2820 aaaggctgaa aactcttaag ctcctcccat tagaatatcg aagagacata accgatctag 2880 ttctgttatt taaaataaaa aatggtgacg tgagcattag tttagctagc cttctctctc 2940 cagccacgtc ccgatacaat actcgaaatt accatcctaa caattaccgc cttttttcca 3000 ctcacaacca aaattattac aggaattcgt atttccctag aactgtcaaa ctttggaata 3060 gtcttccttc acttatgaaa tcttgcacta cgctttcgtc tttcaggtat cagctgacaa 3120 ctcactattt agagaaactt gccttttacc aacctccata attaccatcc taacaattac 3180 cgcctttttt ccactcacaa ccaaaattat tacaggaatt cgtatttccc tagaactgtc 3240 aaactttgga atagtcttcc ttcacttatg aaatcttgca ctacgctttc gtctttcagg 3300 tatcagctga caactcacta tttagagaaa cttgcctttt accaacctcc ataatttcat 3360 agagcttaaa tttatgtaat tcaattttta ttttcgtttt agaattttta ttgtttgtaa 3420 tttgttggga aagaatttca attggggctt acgccctgtt ttcttctccc gtcacattgt 3480 ttcttatttt ctttattttg tttatttcct attgtaaacc gtagtatttt tttgtgtgac 3540 aaagccaata aactaaacta aactaaac 3568 // ID Gypsy-55-I_NV repbase; DNA; NEM; 3969 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-55_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55-I_NV; KW Gypsy-55-LTR_NV; Gypsy-55_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3969 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3969 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-55_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 545-545 (2007). XX DR [2] (Consensus) XX SQ Sequence 3969 BP; 1232 A; 853 C; 988 G; 896 T; 0 other; tggtgtcaga taaattggga tagcaagatg gcaacctacc agatcactcc gcctgacaag 60 ttcgagttcg gaaagccgga tggctggcca aaatggctga aacgctttga gcgatttcgg 120 attgcctcgg gtctcgacaa aaaggatgca ccaagccaaa taaacgcgtt gatctacacg 180 atgggagaaa gagctgaaga cgtactcagc caatctcact tatcgaagcc gaatcaaaga 240 attacaaggt cgtagtagag aaattcgacg gtcatttcgt caagaagaga aacacgattt 300 tcgaaagagc aaagttcaac caaagggtac aacttgccgg cgaaagcgtg gatgcattca 360 tcactgacct gcatagtcta gcggaacatt gcaactatgg taatttaact gatgaactta 420 ttcgagttgt cggtcttcaa gatgcgaaat tatacgaaag gttacagtta aaagccgatt 480 tgaccttgga aaaggccata gacgaagcaa ggttgaatga agcagtgaag aaacaacaga 540 atgttgtccg aggaagcccc tcaatctcaa acgagaattc tgtggataaa attggaaaga 600 aaatttggaa gcacagagac aacaagaaac ctttcaagac accagagtct aaagagtcca 660 agaccaagtg cggtagatgt ggcaagaccc ctgcccatgc tcgtgcccag tgccctgcgg 720 ccgatgccga atgccataaa tgtaagaaga aaggccattt taaagcgatg tgtcgaagcg 780 aaaagtctgt tagagaagtg agtgataact cagaaccatt cctaggaact attgacgtcg 840 aagaacttac aaccgactgt tggaatgttg acgtgacact ggaagggatc cctgtcagtt 900 ttaaactgga caccggcgca gacgtgactg taattccaga gcaaatcttc aagaaaactg 960 gatgcaagct caaacggtct aacaccagac ttactggtcc tggtcaacag aagctcaagg 1020 tacagggtat gattgaggct cacataacac acaaggataa gtcaatcaag gaaaacatct 1080 ttgttgtgaa ggatcttaag cgtccattgc taggcagacc aacgattgag actttgaact 1140 tagtttctgt cataaactca gtcaagctga cacaggagga attctgcaag aagtttccaa 1200 agttgttcaa aggactggga aagctagata cagagtatca tattgagctc aaggagggag 1260 cagagccata cgcagtacac acagcaagga gggtagccct accattactg cccaaagtga 1320 aacaagagct agagcggctt gagacgcagg gtgtaatttc aagagttgaa gttcccacgg 1380 attggtgtgc gccgatggtt gtcgttccta aatctaatga ccaagttagg atctgcgttg 1440 accttactcg tctgaatgat tcagtcaagc gtgagcggca tattctgccc tcagtggacg 1500 aaaccttagc acagttaggg ggtgctaaag tttttagcaa attggatgct aattcgggat 1560 ttcatcagat accattgtcc aaggagtcaa cgctattgac aacattcatc actccatttg 1620 ggagattttg ctataatcgc ctcccatttg ggataacttc agcaccagaa catttccaga 1680 agaggatgac aagtgtgctc gctggtgttg aaggaactgc caatatgatt gatgacacat 1740 tggtgtacgg acgtgatcaa caggagcacg atgaacgcct agagagagtt ctgaagaagc 1800 tagaatctgc aggtgtaacg cttaacagag ataagtgtga gttctcaaag aacagagtca 1860 ctttcctggg tcatgttgta gacagtgacg gagtacggcc cgaccctaca aagataaagg 1920 caatagcaga tatgaaagag cctaaggata tacacgagtt gagaagattt cttggaatga 1980 ccaatcaact agggaagttt tccagcaagc ttgcagaagc gtcaaagcct ctccgagacc 2040 tacccagcac caagaatgtg tggatatggg gtccatctca gcaacaagca ttcattgctg 2100 tgaaggaaat actctgcaag gatgcaacag tgcttgcaca ttacaatgct caactggaaa 2160 caagagtctc agcagatgcg tcatcttatg gactaggcgc tgttttcgag cagcagcagc 2220 cagacctatc gtggcgacct gtagcatatc agtccagagc gctttctagt tgtgagcagc 2280 ggtatgctca aatcgagaaa gagggtccac cgagggtcca gagatttcgc atgcgtttga 2340 tgcgattcca ctacagtatc cagcacatcc caggtaaaga cctgatcatg gcagacatgc 2400 tgtccagagc accagttgag aatcgtgatg gccaggaaga gaacctccat gaagtaagtc 2460 aggagttcgt agaccatgtc atcgcaggcc tcccagctac caacaggcaa ctggataaca 2520 tagcagccca ccaacgtgag gatgaggtat gccagctgtt aatgaaatac tgcagagatg 2580 ggtggccgga gaaggcgaac cttatcaagt tgtatcaatc agtggcggga gaactgacag 2640 ttcagaatgg cttgttgatg agaggatgta gaattgtaat tccgagttca atacgaatgg 2700 atatactgga gaagttacat acgggtcatc tcggtatcgt acgatgcaga cagcgagcca 2760 accaatcggt ttggtggcca gggctagcac gtcagttaca agaatgcgtg gagaactgta 2820 aagtttgtag aaagcagtca agaaacccag cagaaccact gatggcaact gagctgccaa 2880 gtctcccctg gcagaaagtt gccacggatc tgctggatta caaaggacac cagtacctgg 2940 tagtgactga ctactattcc aggtatgtgg aactagctaa ctactactag cacttcggga 3000 gacataatta atcacttaaa gtctatcttt gggagacacg ggataccaga gtgtttagta 3060 tctgacaatg ggcctcagta ctcgtcccat gtgtttgccg agtttgctag agagtatgga 3120 tttacgcata tcaccagtag ccctcgttat ccacaaggta acgggcatgc tgagagagct 3180 gtccaaactg tgaagtcact tctgaagaag tgcaatggtg atccatacct gtcactgttg 3240 acataccgcg ctactccact ggagcacggg ttcagtcctt cggagctact aatgggacgt 3300 cgactcagaa caacagtacc tatatcacca gagcagctga agcctgcagt cccagacttc 3360 aatagggtca aagctaagga tgacatgatc aaggatcgtc aaaagcgtaa ctttgaccag 3420 catcatggtg cacgtgaact gacacctctg aaaagtggtg acaaaatttg gctgagcgat 3480 ttcgagactg aaggcacggt aaagaaccag gtcgagacac gcagttacac agtatctaca 3540 ccacgaggtg agctgaggag aaaccggaga cacctgaaaa gtcttccgga tgagtcaaaa 3600 gagacactgg actgcgaacc tgatcctgtc ccacctgatg ctgacaatac actggagaca 3660 gcgataactc cagcacatgt accgacggag agtcctatcc atgacagtat gcggaccacc 3720 cgcagtgacc ggatcatcaa aacaccacaa cggttcaaag agtgagagct cgacaaacaa 3780 gtaggacaaa aacctaagat ataagacatt gtctttattt ttctagttat aataggctac 3840 ttagccagtg ttttgttcat ggacacttta ttgacattct acatgagttc atgtatgtta 3900 cactatttct tagataagga cctattccaa gttatgtaaa agtggtattt gtaagcccag 3960 aaaggggga 3969 // ID Gypsy-53-I_NV repbase; DNA; NEM; 5190 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-53_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53-I_NV; KW Gypsy-53-LTR_NV; Gypsy-53_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5190 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5190 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-53_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 541-541 (2007). XX DR [2] (Consensus) XX SQ Sequence 5190 BP; 1354 A; 1346 C; 1501 G; 989 T; 0 other; ttttggtgtc agaggtggga taactcagat tgaaatagca tttacagtac aattttttaa 60 aatcttttaa tctaaacggg aacgattata atggctaatg tggaagaatt ggctgcgacc 120 gtcgctgcgc tgcaggctct cattgatgag ctgaccgcag agaatgcccc aaccccggac 180 tcatcagcgt ccacttcctc atccgcctaa accctgggag gtcctgtccg tgtcctgaag 240 gtcgacttcc cccgtgagag gaaagcccga aaatatgacg gaacgaagga tgacaaggtg 300 ttggaggact gggcagagga tgcacagagg gcggttgacg ccatgaagtt ggaaggtcgg 360 gacgcagcag acttcttgtt cggcagcctg gacggagcgg ccagggacga ggtgcgcctc 420 aggtcaaggg acgagtggga gacgccagag cagctcttcg ccgtccttag ggagaccttt 480 ggagagaaac tcactgcaaa acagctcctc cagcggttct atggcaggcg acaggggaag 540 agggagtcca tccaagattt ctcccactcc ctgatagtac tgatggacaa gatccagaag 600 tgccatcccg ggacattcgc caacccagac aaggaccgga ccctgaggga cacgttcgtg 660 gaaaatctac gggaccagca actccggcgg gatctaaaga gaatgatccg ggaatcccca 720 gatcgtcggt tccaggcggt gagggaggag gcattacgct cagccgagga ggacagaccc 780 ccaccacgca tagcttacag cggcgaggtg gaggcggagt ccgctgagtg tcagcaggtc 840 accgcgcccc agtccaagct catccaggaa ctgttggcca gtcagaaggt gctaactgag 900 ggactgcaga ggcagcagca ggtgcttgcc gacacgcagg cttccctggc caccctcgcc 960 aaccgggtac agggacggga ggccaggtgg tcagccctaa cctgctacac ctgtgggcgt 1020 gttggccaca tcagccgttt ctgcacaagc caacaagacc aggctacccc caggaaccag 1080 acgactggac gcaacagtgg aaggaagagg caagagagga agaaggaaga tgagtcgtca 1140 aactccaacg ccctgcagca gtgagccatg ctgcaggggc caaccatggt ggctctatct 1200 ctacgcagga accggaggaa ggagtgaagc ttgtcgggac aactcccaca gcagtggcaa 1260 ggattggtgg ggtaccagtg cgtggtctag tggacactgg ctccatggtc accctcgtca 1320 ccgagacctt tttccgggac cagctacagt ctgcgctagg ggatgtccag aaggactgaa 1380 cattccgtac gtaggctatg tatgcaccac ggtagagatg ggcggggtat ctattcccag 1440 ctgtgggatc tttataaaaa gggatatccc agccactagt ggaatgaaga gacaggtacc 1500 tgggattttc ggggcaaacc tactgtctca ggtaccagag tttaagaaat taatgacaga 1560 agataagaaa aggactggtt ttgctaaggt ggcggggttc tgcaacgtgt gggtcccccc 1620 ctttagtgaa gctgatgtac tagtgactgg ccctcagtgg ggctgtagtg ctgttgtgga 1680 gcctttatcg gttccaattt gtggaaactt gtctgtggcg agcactcttg taaatacgtc 1740 cagggcgtgc tttgtggtca aggtagctaa ccagaccgca aaagatatct ggctcaaacc 1800 cagaacacgt cttggaattg tgcgggaatg tgatgtgttg caacaggggg agcctttgtt 1860 gttctttcag gaaagtaact cagtgacggt ctcttgtggc ctcagtgcag atcctcggaa 1920 gccacccaaa cgggaagccg atgacatggc gcgttggcag gggtcgcaag agctcccaac 1980 cgggatcact gttgaatgct ttcctggaac agagcagcag cgggagacgg ctctccaaat 2040 cttcagaaat taccgagatg tgttcgccaa agacagtgat gacatggggt gtacttccac 2100 cacctaccac cgtatccaca ccgaggacga tgtacccgtg atggagcggc accggcggat 2160 acccccaaac cagtaccaag aagtgaaaca gcacctgcag ggcctcctga ggcgtcaagt 2220 gatgcgtccc ccatcgtgct cgtaaggaag aagtctggca ccatccgcct gtgcgtagac 2280 tacaggagga tcaacagcaa gacgaagcgc gacgcgtacc ccctaccgag aatcgaggaa 2340 tccctggatg cgcttcgtgg ggcaaggttt ttctcaacga ttgaccttgc ctccgcttac 2400 aatcaagtgg aggtggaccc ccgtgacaga cacaagaccg ccttcaccac gcccatggga 2460 ctcttcgagt acaaccggat gcctttcggc ctccagaacg cgcccgcgac gttccaaaga 2520 ctgatgcagg gcgtgttcag ggaggagctt ctccagtcaa tgatggtgta cctcgatgat 2580 atcattgtat ttgcagaatc cattgatgag cacctgcggc gactcgaggt agtgttccgg 2640 aagccccgcg aacatggatt gaagatcgaa ccatccaaat gtcagttctt cagaggtcag 2700 gtaccctact tgggccacat agtatcagca gatggtgtcg ccactgaccc agagaagacc 2760 aaggctgtaa gtgcatggcc ggtgcccagc actgtgcgtg acttgaggtc atttctcggg 2820 tttgcatcat attatcgtag gtttgtccct aagttcgcac aggttgctgg cccactgcac 2880 cgtgtcgtca cccagctggg aagtggacac agccagaagt caacccggaa ggtcatcgga 2940 gagctgtgga cccccgagtg tcaggcagcg tttgaccaac tgaggaccct gctgactacg 3000 gctccagtac tggcgtatcc tgactacaac cagccattca tcgtggagac tgatgcatcc 3060 aacgagggcc tgggcgcagt gctatctcag aaacagccag acggtgggac acgtgttatc 3120 gcttatgcaa gtcggggact gaggggagca gagagaaaca tggaaaatta ctcctctcgc 3180 aaattagaac tgttagccct caagtgggct attagtgaga aattcagaga gtacttactg 3240 ggatcggagt ttgttgtcta tacagacaac aacccgctaa cctacattca gaccaagtgt 3300 aagctgaaag ctattgagca gaggtgggcg gcggagttag caaacttcga tttcagtatt 3360 aagtacaaac cgggacggca taatgtaaat gcagatgctt tgagtcgcat tcacaggtat 3420 gaagagacag tggcagcaat cagtgccgag gtcacctacg aaccaagtac cacccatcta 3480 cccgaggaag tgagggagca actggtcacg gcggcagcag tcatgacgga gctgcagccc 3540 cacctactag gggaatcaca ggctacaacc ctacccagcg tgacccaggg ggaggtggca 3600 cagagacaga gggacgaccc agttatctca aggctgctac acttcagagc ctgtggacgg 3660 aagccaaaca agcaagagat gtccaaggaa acaaagcatg tccagcgcct gatgcagcaa 3720 tggagcagag tgtcggagaa agatggtgtc ctctaccgcc gtactggaga ctcccaggga 3780 gacgagttgg atctgctcat agtaccaaag tccttgagga gtcaagtcct gaagggtgtg 3840 cacaaccagt gtggccacca aggaacagag aggaccgaac tactgctacg gaagaggtgc 3900 tggtggcctg gactgggaat ggacgtcaag cggtggatat ccgaatgtga gcgctgtgtc 3960 atcgcaaggg gaccccaagt accggtaaaa accccccttc aaagtatcat cgctacaagg 4020 cctcttgagg tactggcgat ggacttcaca gtgctggaac cttcgtctga tggccgtgag 4080 aacgtgctgg tgctgactga tgtatttacc aaattcacat tagccatacc aacacgggat 4140 caaaaggcgt caactgtggt gaaggcactg gtcaaggagt ggttcctggt atatggtgtc 4200 ccccaccgca tccattcaga tcagggacgg agctttgagg cggaggtcgt acaggagctg 4260 tgccagctgt atggggtgaa gaagtcaagg accaccccat accacccaca agggaacggt 4320 caatgcgaga gatttaacag gactctccat gacctgctgc gtacactccc cgcagacaag 4380 aagcgcaggt ggccagagca cctcaaagag ctctgctatg gctacaatgc gacaccgcac 4440 ggtacaacgg gctactcccc cttctacctc atgttcggac gagatacaag gctccccgtt 4500 gacatcctgc ttcccgacag cgcagcccac aaggatgacc agctgtggat cacagagcat 4560 caaaagcggc tccgtgacgc acatgctgct gctggtgaac gccttaggga agctgccagg 4620 ataaaaagca gtcgacatca acgagggaga tcctacgcgg aacccatacc attgggtgag 4680 cgcgtcttca aaagaaacag aggggtcaga ggaagaaaca agatccagga caagtgggag 4740 aaaaccgtgt tcaaagtact ggaccgaaag gacaacacct acatcatcca gccagcagat 4800 gggagcgggg aagaaaagac agtaaacaga ggagagctgc aggtctgccc caaggcaatc 4860 ctcgagacgc aacaccaacg acgccagcaa agagccacgg ccgaaggagg cgagtcatct 4920 gacgaggaag aggatggatc tcctgagctc actatagagc tgcctcgtga gattccaagt 4980 tacgattctc acgagtccag tgattccagt tctgaggagg aagcaacagc accaccacct 5040 ccacgtcgct ctacaaggtc taccgctggt aagcacagca accgcttcaa tctacccatg 5100 cctgctgttt gatgacccgt gaccgctaca cctgtaatat ggacattgcc tggcttgccc 5160 gagggcgagg caagaaaaag agggggcgaa 5190 // ID Copia-3-LTR_NV repbase; DNA; NEM; 974 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Copia-3_NV autonomous LTR DE Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3-I_NV; KW Copia-3-LTR_NV; Copia-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-974 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-974 RA Kapitonov V.V. and Jurka J.; RT "Copia-3_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 383-383 (2007). XX DR [2] (Consensus) XX SQ Sequence 974 BP; 297 A; 203 C; 207 G; 267 T; 0 other; tgtcacgcag gaataagtca cacatgtagt gaagtgatat ttagcatcta gaaattatat 60 actgatcggc tgtcagcata ttgaagtcca cggaacaact aaaagcattt tgtttagtta 120 acctatcgcg tttgacaggg aaatctaaaa cgctcgcatg gaaattgctt agccaagcag 180 ttcctatttt tagtagattg accttttgct cgggaaactt ataggcgtac cgcgtccctt 240 ttcaagtggt actggagaac agagttttga gcatttgttt tagtcctgta tccgttaact 300 acataaggaa agttaagtct gagttcacac aaggtttacc ctaagtaagc ttcagaccta 360 gccgtcggtg aaattaggtt ttagtacatt ttaagagttt gagtgcaaaa atgattggaa 420 tgttgtcaat cattatattc acgtgtgtat cttgccatgc gcactagcag tgtaacaagt 480 tagtgtgtga catccgtagt cagtagcaac attgtaaaca ttacgtaagt cacggtagcc 540 caagggtaac cgactggcac acccacgtag gaaggtcgtc cctcgtacac ccattggtta 600 aacccttatc caaacagtgc taaaagccct ttgggatgtc agtgtcagtt atcctaaagg 660 acatgccgtc ttagtagcat ataaatatgg gtgcgtaccg aagccccaac tcactttaga 720 ctcacttaag aacttgaaga gacacctgta agactctctc ccactaacac ttaagacaca 780 aaggacttga agagactcac atgtgaaaat acttgtagac accagatctt gtaaagactt 840 tgtaacagcg aacaagtaaa aaaccggtac ctcccccagc caagcgggtc atagtcgttt 900 tgtcacaagt ggtcagagag agtcatagcc gcttgttaca tgtggttaga gaacccaaaa 960 gtatagctgt taca 974 // ID DNA-3-1_NV repbase; DNA; NEM; 598 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-598 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-598 RA Kapitonov V. and Jurka J.; RT "DNA-3-1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 391-391 (2008). XX DR [2] (Consensus) XX CC DNA-3-1_NV elements are flanked by the TTA and TAA targets site CC duplications. CC The consensus sequence contains 51-bp TIRs. Termini of DNA-3-1_NV CC differs CC from elements that belong to the Harbinger and En/Spm CC superfamilies, which CC are also flanked by 3-bp TSDs. It is likely that DNA-3-1_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes the CC DNA-3-2_NV family. XX SQ Sequence 598 BP; 180 A; 165 C; 115 G; 138 T; 0 other; tgcactagtc aattgaaacc cccaccccca tggtcccggg gaagggtggg ggattagact 60 ttgaccctgt acaaaacaga gaaaagcccc caccccctcg ggacaaaact gcagtcaaat 120 gcccctaccc ctcgggatgc aaactatagg caactacccg acaacaagtc atctgaaata 180 agcctttttt atctttcaaa gccagtacac ttcagcgagt acatttgtac caataactat 240 gaagataaca gttaccaaaa aaatggaaaa ataaatcatc ttcatctggc gttagttatc 300 attcatattc gttttcgcac atttcgccat gcagcttgcc acacgctgat acatggaatt 360 gcttgctaca gaagagaaag agtctcaaac cagaaactga catgactttt gcaaagtaca 420 tttgtgacgc tattcacttg tccccaagcc cccacggtgg ggacaagtct tagagtcaaa 480 aactgtcaat tcccccaccc cctcgggaca gattctcgtt caaaagtgct ctaaaccccc 540 acgttaaccc cacacttccc cgggaccatg ggggtggggg tttcaaatga ctagtgca 598 // ID DNA-9-33_NV repbase; DNA; NEM; 732 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-33_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP288; DNA-9-33_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-732 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-732 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-732 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-33_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 88-98% identical to the consensus sequence. It was CC reported originally as the unclassified NVREP288 transposable CC element [1,2]. It shares common termini with DNA-9-32_NV. XX SQ Sequence 732 BP; 178 A; 159 C; 157 G; 238 T; 0 other; cagtctcgta cccagacgcc gcgcgatgca tgacggtcag gatgcggttt cggggtcgga 60 attcgcttga cgtctggcag aactcaggaa atatcttgca agtttttcaa atatcttgca 120 agcagcgttt ttatgaccgt ttttttttac tttttttgtg cacaagtcca agggcctacc 180 tacacacact cgttgtaaac catttagttt tattttcggt ggttccctgt tcaattagac 240 gatattttcg tttcgtaaaa cccaagacgg cggacgacac tggtgagctc gatacatcat 300 ttcatgaaat gaatttggat ggtctgaatg ttctggcact catttgaact catactgctc 360 tggttggatt gtatttatca caaatataca ctttcagaga tataattcga gcacatactg 420 tctttatgtt ccctagaaga agctctagag cgaggaagtc actattcgca catgatctta 480 cgccgaattc caaactccag gaaagtattt aggctatttc tgcagttgtc atgtgcacat 540 ggaattttac aggcaagaaa tgcagtatgg ataggtcctt cttcgtctgt gaaaattcgt 600 aacatttttg ctcgccgatt tcgtccgcca tcttggatct gtaatctgcc agtcgttatt 660 ttttttccgt cttcgcttca ggattcctgt ggatgtccgc gcaacagcaa ataacgactg 720 ggtacgagtc tg 732 // ID DNA-TA-5_NV repbase; DNA; NEM; 406 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-5_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-406 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-406 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-406 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 406 BP; 118 A; 125 C; 58 G; 105 T; 0 other; ccgtaatgat tcgaataagc gccctccttt aaataagcgc cccctcccca ataagcgccc 60 cccttcgacc tcgaattttg gaataagcgc ccctcccctc cctcccccta aaaatatccc 120 aacaaaagca ccacttgaat ggtgtaaatc ttttgcttgc attttattta gctcgcattg 180 acattctcac attacaacga tattgtcatc gatttataaa caatctaaca gccgtttacg 240 tttatcgcaa ataaagtttt gttctcaatc aattcagaag ctggtatttt ccgccgaaat 300 gaaataagcg ccccctcccc aataagcgcc ccctctccaa taagcgcccc cacaaagacc 360 cgaaaaatta aataagcgcc ccgggcgctt attcgaatca ttacgg 406 // ID Gypsy-25-LTR_NV repbase; DNA; NEM; 87 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-25_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25-I_NV; KW Gypsy-25-LTR_NV; Gypsy-25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-87 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-87 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-25_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 482-482 (2007). XX DR [2] (Consensus) XX SQ Sequence 87 BP; 23 A; 12 C; 20 G; 32 T; 0 other; tgttgtatta tgtatgattg cgtgacgttg tatgacgtca tggttttgag ataataaagt 60 cacttagcac ttgaccgtcg tacaata 87 // ID DIRS-8_NV repbase; DNA; NEM; 4551 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-8_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4551 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4551 RA Kapitonov V.V. and Jurka J.; RT "DIRS-8_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 447-447 (2007). XX DR [2] (Consensus) XX SQ Sequence 4551 BP; 1305 A; 1150 C; 1005 G; 1091 T; 0 other; attgcacttc ataactgtcg acttcatata acaatgcttt gtctttattt tcttcgctca 60 aatacagctt tttaaatcaa ataacaagaa aaaaaaacta acgtgtgggg cccctgtgtt 120 ccgggcccct taactcttca cggtccaccc catatctcgt ctttttgctt cgctcctcgt 180 gtgtcgaaca agatggctct aaatttggac ggaaaagacg aaaatcctcc actacaaaca 240 ggtaatattc aatcggaagc cgcgtcggca cttccctctt caattttaca agcagatttt 300 gtagaattgc tgaaagattc gcttctcccg tcactggtag acacggttaa aaggagtctc 360 attgacgatg ccaatcggca aaactctgcc accggtcaag cccccagttc aaaaaaaggc 420 gaaactgtct tacccagtac agccactggg tcaccaaatg gcgatatttt acccagacaa 480 gccactgggt cacaaaaagg catgcaaggt ggtccaacgc cagccaaaag gcctcggctg 540 accgaaaaca ttaacagtcc cgcagtcatt cacatcggag acgagggcga gataaacgat 600 actcaaagcc aacatgagct tgactgggag gatgatctct gcgaaccatc agctcagcgt 660 tggcaagctt ctgaggaact tgcttcactt ctgaatgtct gctttgctaa gcaactttca 720 ggctttgaca agcgtcaatt gacacggagt tgtccacgac cagatgtcga ctgtgtgtac 780 acaccacagc tcgacagatt cctcccagat ctcgtgccga aatgcaagca ggaggataag 840 accctgcgta aaactcaaga tttactgctg gatgtgtcag ggccaatctc agcagcctat 900 gaacatatct gccaagcaaa ggacaatcct caggaagcta atttgtctga agtactaagc 960 ctcctcacaa agtccctgca gttactgggt aatgtcaaca accacttgtc tgccaagcgt 1020 aggacacagg tgttgtccaa gattgggcca aagtatactt ctctatccaa tgaaacatgg 1080 aaaaataatg gcaaagagct atttggccaa gagtttgagc aacgcctcaa gcagcgtgca 1140 gaaacagcaa aggccatttc ctcagcttca tttgtcccta gaggaaggcc cttttttcgg 1200 agaggtgcct cctcgtcagg aacatggcag cggggaggca cagcgtacgg ccagtacagc 1260 accagaggtc ggggtcagtt cagatcaacc agaccaatca ggggaagggg cagaggattt 1320 atgcccagct caacccagtc aacaccccaa caataaacag tcaaggtatg tttatcacac 1380 ctccccagga aaacctagtc ataggggggc gaacagctca cttttattca aattggctag 1440 acgtaacaaa cgacccatgg gtcctagagt ctatctcggg ccacaaatta gagtttgtac 1500 aggagccata ccagcttacg gtaccagtca tgcatctcac accccagcaa atggagataa 1560 tagattcaga ggttattgcc ctagacaaaa aaggggcaat tatcagggtt ctcagccaca 1620 gttacccttt cgaaaaccag ttcgtaagcc ccttattcac tgtacccaaa aaaggagggg 1680 gtttcagacc tgtgataaac ctcaagggtc tcaatcattt cctagaatac caacatttca 1740 agatggaagg ggtgacaatg ttaaaagatc tcctgcgaag gggcgatctt ttgaccaaaa 1800 tagacctaaa agatgcctat ttgacaattc caatttcgaa acaggaccaa aagtacctgc 1860 gcttcaggtg gaaaaaccaa ctctggcagt ttctttccct cccatttggc ttagcaagtg 1920 ctcctcgggt ctttaccaaa atcctcaaac cagtagtagc acacttgagg aaaaggggta 1980 tccgactaat catttacttg gacgacatcc taattatgtc tgcgtccaaa gaactggctc 2040 tagaacactc gaataccgcc gcctcactgc taagcaatct aggttttgtt atcaacagag 2100 aaaaatccat tttaagccct acacgggagc tagagtttct aggtttcttg gtaaactcgg 2160 aaacaatgtc catgtccctc ccaagggaca agatcagagg cataaaacgg gaatgccaaa 2220 atatgctaga aaatccaagg gtgtcagttc gggatttgtc acgacttctg ggaaaattgt 2280 cggcatccat tcaggcagtt ttcccagccc ccctgcacta ccagttcttg cagaaagcga 2340 aacacttagc tctaaagaaa agtctggatt acgagaccat gttgacccta gaccatgcag 2400 ctcaagagga gctgacatgg tggagggacc atttggcagc ctggaacgga aagtccctgt 2460 taaaacgtca aaacgatctt gtcatagaga ccgatgcgtc aacctcagga tggggggcct 2520 cctgcaatgg cgtccgaaca gggggtctgt ggtcaaacca agaacgtttc caccacatca 2580 actgcttaga attgatagca ggagggtttg caataaaatc cttctgcaag gacaagacat 2640 ctgtccaaat aaaactgcta atggacaata ccacagccat tgcatacata aacaagatgg 2700 ggggacactc ccctgtcctg gccagtctag tttacgacat atggcagtgg tgtctcgaaa 2760 gacaaatcag tataagtgct caacacattc caggcgttca caatgtggcc gcagacacag 2820 agtccagggt agacagggac tcttccgatt ggaaactaga cccagaaatc ttctcactcc 2880 taaacttgtt atggggaccg cttcaggtcg acctctttgc aacccgtctc acgaaccaac 2940 tcccaaggtt tgtgagctgg agaccagacc cagaggcgga agcaacggat gccttcactc 3000 tggactggtc ccagatgagg ggttatgcat tcccaccatt caatctagta ggtcggtgcc 3060 tggcacaagt attggaacag agagtccagt gtctgtgctt gctgacacca gtatgggaaa 3120 cccagccgtg gtatcccatg ctattagaac tcagcatgga cttccctcgc ctgctcccag 3180 tcaacccaca actactgtac agggagggga acccacatcc ccttcctcgc cttcaactag 3240 caggctggct tgtctcaggg aacgatatgc ttcgagcggg gtttcaggct aggctcaaca 3300 gctgctcttg tccgcctggc gcagccaaac ctcaaaatcc tatgactcag cctggcgcaa 3360 atgggatagc tggtgtgtta aacaacaaat taatcccctt tctgcctcta tccaagacat 3420 tgtgaatttt ttagctgcac aatatgacaa tggaagagag tatcgcacca ttaacgttta 3480 tagatcagct atttcaggga tccttcctaa ggtggatggc ttatgtgttg gccaacaccc 3540 cttagtgtgc caagtgatga aaggtatatt tcaaaggaaa ccaccccttc cgagatatac 3600 cgcctcctgg gacgtctctc aggcactcat gtatgtaaaa tcgttaggac acaatgcatc 3660 attgtccctt aaacaactgt ctgctaagct agtattactg ctagctctca cctctgcaga 3720 gcgtggatca gaattagtag cacatgatct ccgattcagg aaacatcatc cggaaggagt 3780 ctcctttaac ctccccgaac ttactaagtc agttcgtgtg ggtaacagtt taaaggtctc 3840 ttttcactgc agtttcccac aggataagct cctttgcccc tgtgaatgtc taagagacta 3900 tgagcgtcga acaactgagt tcagaccagt tgaccccgct ctccccaaca agctgttttt 3960 agccaacatt agacctcaca aaccggtgac ctctgcaacc ctagcccact ggttgaaagg 4020 catcctttcc gatgctggta tcgactcaaa cacatttaag gctcactcta caagaggcgc 4080 tgcttcatct acggcagcca gagcaggcct gtctgttacc gacattataa aaatggctga 4140 ctggtccacc gatactatgt ttcgtaagtt ttattacaag ccggtacaca atgcgtcatt 4200 tggcaggacc gtgcttagcc aagtttaggc tttgaacaag cattgttata tgaagtcgac 4260 agttatgaag tgcaattcca gattacgcaa gacccgaagg gtcgcagtgt aggatgaatt 4320 gcacgaataa atggagacgc aatataacaa tgctcccacc ctcccaaccc tttaatcatt 4380 gttattttgt tctttcacag gttgttccgc tcatcaaaaa gacgagatat ggggtggacc 4440 gtaaagagtt aaggggcccg gaacacaggg gcccacacac gttagttttt tcttgttatt 4500 tgatttaaaa agctgtattt gagcgaagaa aataaagaca aagcattgtt a 4551 // ID Gypsy-6-LTR_NV repbase; DNA; NEM; 153 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-6_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6-I_NV; KW Gypsy-6-LTR_NV; Gypsy-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-153 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-153 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-6_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 568-568 (2007). XX DR [2] (Consensus) XX SQ Sequence 153 BP; 34 A; 26 C; 39 G; 54 T; 0 other; tgtaatatat tcggatgggc tccctgtgtt gtacaccata tttggaatgc ctcgtgggca 60 tgtcgggggt tgttcagaaa taaatggagt tcagttgttg tgttcaacga gctgtctatt 120 tcttcgtgat gttttagtcc cgaaaacatt aca 153 // ID DNA-9-30_NV repbase; DNA; NEM; 162 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-30_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP447; DNA-9-30_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-162 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-162 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-162 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-30_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 78-94% identical to the consensus and has 17-bp CC imperfect TIRs (3 mismatches). Originally, this family was CC reported as the unclassified NVREP447 DNA transposon [1,2]. XX SQ Sequence 162 BP; 36 A; 37 C; 39 G; 50 T; 0 other; tagactttct caaagtccgt tggtcggctt tttagaaatt ggcttttgct gtacaacctc 60 tccgcgcgcc cgttttgttt gcttcgctta ctgaggaaaa tacccattag atcgcgcgct 120 cttattaggg aaaatcaaag agggcgactt ggggcaagtc ta 162 // ID EnSpm-2_NV repbase; DNA; NEM; 9347 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone EnSpm-2_NV autonomous DNA transposon - DE consensus. XX KW EnSpm; DNA transposon; Transposable Element; EnSpm-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-9347 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-9347 RA Kapitonov V.V. and Jurka J.; RT "EnSpm-2_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 450-450 (2007). XX DR [2] (Consensus) XX SQ Sequence 9347 BP; 2986 A; 1536 C; 1740 G; 3085 T; 0 other; cacaggaaaa aaatatgatt tcccaaaatg ggaaaaaaag ggattttttt ggggaaaagt 60 tgggaatttc agcaaaaatc cccaaaatgg gaaagtgata ccaaaaccaa tgttgggaca 120 acaaaacccc aataataacc caacttgggg aatttaatgt cccaataata acccaacttg 180 ggaatttgat gccccaataa taacccaact tgggaatttg atgccccaat aataacccaa 240 cttggggaat ttaatgtccc aataataacc caacttgggg aatttaatgt cccaataata 300 acccaacttg ggaatttgat gtcccaataa taacccaact tggggaattt aatgtctcaa 360 taataaccca acttgggaat ttgatgtccc aataattacc caacttggga atttgatgtc 420 ccaataataa cccaacttgg ggaatttaat gtcccaataa taacccaact tgggaatttg 480 atgtcccaat aattacccaa cttgggaatt tgatgtccca ataataaccc aacttgggga 540 atttcatgtc ccaataatta cccaacttgg ggaatttata atgacacaac ttggggaatt 600 taatgtccca ataataaccc aacttggggg gaatttaatg tcccaataat aacccaaccc 660 aactcaatta atatcccaac gtgggaaatc tgaattcaca ataacccaat acaaggattg 720 ttagagtgca aacagtaaaa gcgtgaaata caaattacta aatagtacaa aatagtgcta 780 attaaacaat agaaaacaat agggataaca ctatttagta caatttagta ttactaaagt 840 ttcacagtta tacatgtatt gtttgcactc tattatatta ttacaaatta ataatttgaa 900 tatattataa caatacttgt atttggatat aatattttgg acttaaaaag tgattgcaaa 960 caacaacaat actttcaaaa cgttttattt actgtaacat aaattcgtga taaacattaa 1020 cagcagaagt gccatgtttt ggttaactta aatacaatat taatttgatg tgcaagtggg 1080 tgatgattgt aatgctatac aaatacccaa gattattgca catgacatga catgagcatc 1140 aaatattgcc catgtcaata ctcagaagtt acacaacaat taatatcaac atgcacagac 1200 ctattagatc aatatcacat aaagatttaa gctgttaagc ctgcctcaca tcactagtgg 1260 ctacaacttc agcatatcca attcaaacaa gctaaatttc tcaaactatt tctaaatctt 1320 ttgaagcaaa taacgaatta agcttttaga agatataaag aacctaacaa agacaagtgt 1380 ataattaagt gtctacctca catcagtgaa atttccttta acacgtttac atcattaata 1440 gatgttatct gagacggtgg tgttttaaat tctacgtatt tttgacttac aagttttcta 1500 ataagtactg ctattgcctg actaggtgag agagatgtta aggcattgct tttcaaaaag 1560 aatttatttt taagtacatc aacacacacc tctctggtga gttgtttacc aaacactgat 1620 ttaatcactg ccctctttat ttttaatggt agagcttcaa cttgatcacc tgctttcgca 1680 tcttctgggc ttgaagtgct agtgctgggt tttggaattt tggggcttat agggcactgg 1740 cttccttcca tctcatcatc actcaaaatc tctgtgtctc cagcactact tccatcctgt 1800 tctaaatgtt catcctgttc cccctctctg tctagatcta ctgagctttc ctgtagtcaa 1860 aatacacatt atcagcattt aatacatttt gcaaggttca ttaatgcttt gaaaatactt 1920 taaaaatgca ttacagtgtg gacatttcaa ctgggaccac tttgagaatg tgattgcatg 1980 acaaattatg aatagaaaca aagcacttca acttaggaaa cttcagctta ttaagttttt 2040 gttctttgtg atctgattgg tcgacattgt tttagtaaaa atgctttgtt ttaattcaca 2100 attgtcattc aatcacaata tcttaagtgg tcccatttaa agtatccaca ctgcaagttt 2160 tcatgaaaat atgagataat acttatatat aagatattta gtatgataac acattaatac 2220 tagattctat aaagtatcaa atttacttag gtatgctaaa acaaaattta cctctagatc 2280 tgatgagcta tggttgcttt gcatctcttt ttttatggcc tgggaacttg gaatctacaa 2340 aagttaaaaa atactataac tgaagtgcaa ctctcataga tacaaaatga ctacttgtgt 2400 ctgtgtgctt tgcaattgat ggtacattta cattacattt agtcaacgaa atgccaagtg 2460 tacaaaaaag ttgatcactt cagttgacga aaactattaa caaacctgca gacatgcaaa 2520 agcacataaa taaacaaaca atgcaattaa aagaaatatt tttattacct tataatcatc 2580 atcataagat ggacgttttc gttttttgtt gtatctacgt tgttcattgc aaaaactctg 2640 tatgtgcttc tttattcctt cctttccaaa attgatctct tttatgccac attctttctc 2700 tatgttttcg gcaaatgcat ctagttcagc tttggcctca ggcgagttaa actttggaaa 2760 ttcagtccat ttgtttgctg ctaatacccc tattttttta cgtctaaata aaataaaatg 2820 caatcaatgt gggtaccatt tttgttgata ataatatatt gggtgccctg tgcccataaa 2880 catcgtttgc tttttatatt tgggctttct gtggctgaaa ctcttgcaca tggcatgggc 2940 tactgcagct cgatgtactt gcatgatcag cattgagttt tgtaatttaa tagtttttat 3000 ttgtattgga ttttgtgaaa tacaaagttt gtttagtttc cgagaacaat aaaaaggacc 3060 accaaaacag ggggagtgtt tttaacctat tctaagaatc caaatgttct gatcttacat 3120 tttaataaaa caagtttacc aaaagaaaac ttactcaaat atctttgtta aaacataaat 3180 tggcaacctt agaatatatt atgaatgatt caaatgcatt agtagctgaa acaacctcga 3240 tggaaatgga ttcgctcaca taacaaggca gccattttta atacctcgag gtcctcaaga 3300 caagatgacc atgtcatctg attaatccat tgtagttgaa tatttgctga caaacaaaca 3360 aaatatttgt aacacaaaat aagttaaata gcttactttg taagatataa gtgcttcatt 3420 tctggattca gctgttgtaa gtcggccata gtcggttttg gcggaggaga aggggacgtt 3480 ttggcgccaa aagatgcctt ttgtcttttg agaaaactaa actccttctt gaaaatgacc 3540 gctttaccgt aacacaagga aagtctttga aagattgtgg catccgcttt cctttccaag 3600 aggtctgaaa tagccatctc attgacaact tgttcaccta gttcaagaaa gaaaaagttg 3660 ctctgttgag tggggtttca aatttagttc agtatttttg tgaaagcagt gcatgcatac 3720 tcacgtttga aagcatttaa aacttcctcg ccgaatagat ctttaatttt cgattccaaa 3780 tcgttcttgt ccgtaagaat ttgagcgttt tcgttcacct gactcgtacc actctgccct 3840 tcttgtacaa tcgagtcatc catcttggaa tatttgcagt gaaaatacag caaggccggg 3900 caagctacgc tgttcatgag tctatttgct atctcattgg tcaattttgc ccgcctttcc 3960 ttcaattttt ctaacagcgg cattgattgg tagttttttc ccgccgtttt agttgttggt 4020 ataagctttc tcactattgg cttacaagtg ctgaatttgg gcttcctttg gtaaacaaag 4080 atggcggatg cgtgcaaaga gctacaagag gaatatatgg tggattcaac gtcgaaatgt 4140 ggtcaagaaa agaagtatcc acatgcagct gtactgaatt atcttataga catgttcatt 4200 gtaggtgcta tcgctgtaaa ggaagagctg ttacaaggaa aacagaacta cggcactgga 4260 acgaagctcg tatatcatct tcatttcaca actcgaaaga ggacgaagct tttggacaaa 4320 atacgtttga agaacatgaa acatctgatg tcacgatgga aacttcagaa aatatcgatt 4380 gcgaaataaa tgttgtccaa gatgtatgta tgaatcatga caatgaaaat agaaatgaca 4440 tggaagatga cttcaatcaa ggcaaccctt acaaaagact tgttgtaaag gctgttctgc 4500 aagctatgac tattgtggat aatagtgggt gttcaataaa aacattcgag gatattttga 4560 gttatgggag gacaatgtta tttaccaacc ttgatccaga aattgatgag gatattttgg 4620 cttctctatg gccaaaatct tggtcagaag tacagtcgct tttgaaagaa gagggattca 4680 cagacccaaa ggaatattat atttgcattt gtcgagcaga gaagtctttc acaagaaatg 4740 gtaagacaac taaaaagtac ctgtattccc gtaagtgggg tattatggag agtaaaaatg 4800 agttatgccc caactgtgga aaatgtggat atataaagta ttactatctt ggtttacatg 4860 aaaagctaaa gaactggttt cggaatctaa atatgtgtag gaaaatgcta tcacattggc 4920 aagaacgaga acactggtta aagagaaaca caagttggcc cttaaaaaaa gaggtttggg 4980 atggggaaat atggttagag gtgcagtggt tttgggaccc agatcaattg tggactgtcc 5040 caacaaggtg cggggagtgt ctcactgtta tttcatcaga cttaatcaat tcatctccaa 5100 aagatattga tggtttgtca ttgctcgaat gtccagaatg ttttaataaa ttttcacata 5160 aagctgaagt agcaaggggt tctcctttga atctggcatt aatcggacac tgggatggct 5220 ggcagccatt cagtacaagt ggcagaagtt gtggttctct tgaagtttcc atattaaata 5280 tgttcaagac agatagatca catattgatg aagtatatgt tattggtttt gtaccgtgta 5340 caactgtgcc aaaaggtgta ccagaggctt atgatccatt tatacagcca ctcattaatg 5400 acctctgtga tggcttcata catggctttg aagttcctta tccttcaaat gctattactg 5460 ttcctgatta tgaagcacat gaaattgaaa cagtgcgtgt tatgttactg tgctgggctg 5520 cagatcaccc aggacaatgt gagtttggaa agtacttgaa ccaggggaaa tgtgcttgta 5580 ggagatgtaa gatggtagga cagcaaagtc ttcaatcaac tcactattat tatggtgata 5640 atcgttttca tgctcggcat ccatgggaga agagagatgt gacagcagag gagagtacct 5700 tttatgatct agacaatgaa aaccgagtaa gtgtacgaaa gaaactatca tcacaggaag 5760 gatttactgg aactccaata tttcatcaat atttgtatcc cctctataag tttgactgtt 5820 tataccacat ggtttatgac attttccata ctctgccttt gaatatatgc aaaaaccaac 5880 tttcaagact gttacagcta gagttattag atgctgtata tgtagatgag caaattgcac 5940 aatttccttg gaacacagaa tttaaacaag gacgtattcc tacttcaatt ggcaaagaac 6000 acaaaggcct tggacactgg aaagcagaat cttttcagaa atttttcttt ccaatgctag 6060 gatgcattgt agaggataag attccagacc ctaaagaact tgaaatcata agtttagttt 6120 cctacctaac tgaactgcac ttctatagtg ggaggaatgg ctggacggat agcatgatac 6180 agctacatga gagacttgca caaacactga taataagaat tgaggagaca caaggacttg 6240 aaatgtgcac aatatcggta cacaatttga cacatgcaca tgaagacctg ataaactttg 6300 cagcatcaga caactattgg tgcgctgtgt ttgaaagagc tgtaaagaaa tatgtagggc 6360 gctcccacaa ctgtaaagga ttagaaatga catttgctaa agcagaatgt agaagagaaa 6420 gcttgaaaag tttggaacaa gcacatggtg atctccccat tgaagaaaag gatgataaga 6480 ttgaggtatg tactgtgtca tcaatgtaaa tctttttagt cgcaggacat tccattattt 6540 gaagtaataa taaaagtaaa caaatatgga ctgaatatat ataatcattc atttatttgc 6600 atattgattg attaacatct agagctgttt atagtcttat aaataccaga atgctttgtt 6660 tatcacattt tatgtcaaat tatattcttt tgaagttttt acaatgtaaa taaaatttaa 6720 aagaataaat ttggcatcaa gtgcaaaaac cacagcactt tgggatttat caaaaggctc 6780 tatacatgta atctgtttaa tggttagtac ataaaaatgt acattttttt taatcagggc 6840 attgtcaagt ctgaggatga ggctaggaaa atctgtacag ccagtaaatg tgaaggattg 6900 ctaataggct caagaaaacc tcaattgcaa gtaattgagt taacagacaa tgaatgttct 6960 agaatcaatt ccattttatc actcccacag tctgttcaat cggcatctag aattgcatct 7020 acttcaggga aatgtttttt aagtaatgtt ggatttaatg gcttggtctt atcaagtaat 7080 gacaatatta ttgcttcgtt ggaggatggt gaatgtattg tccagataaa gcggttcttg 7140 ttgataagat atggactaga caataatcac agtgtattga ttgaaggttt tataaagcct 7200 tttaacaaat cctctgaagg agaaattgat gttaatgtat ggagtggctt tcctaaagtc 7260 aaattacaac ccaatgataa ttcagtcatc ttttcacatc aaagtgtaca gagaaaggtg 7320 atgttgtaca agcatgctca gacaaacctt caaactgttg tggattatga tagacagtta 7380 aaagatgttc caaggctctt ggtccctgtg tatccagaaa aagatgacat gttgttcatt 7440 caaggcgaaa agcaagggga tatttggtac ggaagagtgt caagtgttga tttgtctaac 7500 aaggcagttg aggtgtattt ctatgtggag aaacaacaac atcccaatag atttgtaaga 7560 gaaagctttt ccaggcaagc aagaaacact gtggtctttg attccataat cggtattgca 7620 aatggtcact ggataagtgg aaacatttgg caaaagtcag tataaaattc atcttggaat 7680 gtgtgctgca cagctgagca caaaatgtac attttactgt aagcgatcaa tcttatcata 7740 tttaatttta atatagactt gaacagcaat cttacttggt taattagtaa taattgtatt 7800 acttattttc aatgcagaaa atatacacac atgtatttga ttccctgttt tgggtattta 7860 ttgtgtatga attcacatcc atttcccagt acagggattt tattgggaaa atacatgtat 7920 ttgattccca gttttgggta tttattgtgt atgaattcac atccatttcc cagtagtggg 7980 attttattgg gaaaatacat gtatttgatt cccagttttg ggtatttatt gtgtatgaat 8040 tcacatccat ttcccagtac agggatttta ttgggaaaat acatgtattt gattcccagt 8100 tttgggtatt tattgtgtat gaattcacat ccatttccca gtagtgggat tttattggga 8160 aaatacatgt atttgattcc cagttttggg tatttattgt gtatgaattc acatccattt 8220 cccagtagtg ggattttatt gggaaaatac atgtatttga ttcccagttt tgggtattta 8280 ttgtgtatga attcacatcc atttcccagt agtgggattt tattgggaaa atacatgtat 8340 ttgattccca gttttgggta tttattgtgt atgaattcac atccatttcc cagtagtggg 8400 attttattgg gaaaatacat gtatttgatt cccagttttg ggtatttatt gtgtatgaat 8460 tcacatccat ttcccagtag tgggatttta ttgggaaaat acatgtattt gattcccagt 8520 tttgggtatt tattgtgtat gaattcacat ccatttccca gtagtgggat tttattggga 8580 aaatacatgt atttgattcc cagttttggg tatttattgt gtatgaattc acatccattt 8640 cccagtagtg ggattttatt gggaaaatac atgtatttga ttcccagttt tgggtattta 8700 ttgtgtatga attcacatcc atttcccagt agtgggattt tattgggaaa atacatgtat 8760 ttgattccca gttttgggta tttattgtgt atgaattcac atccatttcc cagtagtggg 8820 attttattgg gaaaatacat gtatttgatt cccagttttg ggtatttatt gtgtacgaat 8880 tcacatccat ttcccagtag tgggatttta ttgggaaaat acatgtattt gattcccagt 8940 tttgggtatt tattgtgtac gaattcacat ccatttccca gtagtgggat tttattggga 9000 aaatacatct atttgattcc cagttttggg tatttattgt gtatgaattc acatccattt 9060 cccagtagtg ggattttatt gggaaaatac atgtatttga tttccagttt tgggtattta 9120 ttgtgtatga attcacatcc atttcccagt aatgggattt tattgggaat aaatcccatc 9180 ttattccatt aaagtgaatt ttttgtgaaa ggaagttttg gcttagattg gaactcaata 9240 atttcccaat tcttgtttca gttttcccca ttttttcaca ttattgggaa attttcccaa 9300 ctataaccca aaatgttaga attgggaaat catatttttt tcctgtg 9347 // ID MSAT-1_NV repbase; DNA; NEM; 41 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE MSAT-1_NV non-autonomous DNA transposon - consensus. XX KW MSAT; Satellite; Simple Repeat; minisatellite; NVREP581; KW MSAT-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-41 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-41 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-41 RA Kapitonov V. and Jurka J.; RT "A family of MSAT-1_NV minsatellite DNA from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC MSAT-1_NV clusters are usually linked to clusters of MSAT-2_NV CC and MSAT-3_NV. Originally, it was reported as the unclassified CC NVREP581 DNA transposon [1,2]. XX SQ Sequence 41 BP; 8 A; 8 C; 9 G; 16 T; 0 other; ctatgccgtg cttgttatag ctgtgactat agctgactat t 41 // ID piggyBac-N3_NV repbase; DNA; NEM; 1001 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-N3_NV non-autonomous DNA transposon DE - consensus. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; piggyBac-N3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1001 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1001 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-N3_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 645-645 (2007). XX DR [2] (Consensus) XX SQ Sequence 1001 BP; 241 A; 194 C; 223 G; 343 T; 0 other; cccattgact cctggctttt ttggagctga atttacaaaa aaacagactg aaaacagata 60 cctccccccc tattctgagt tttatacagc ccgtcaaagt caaacacagc tgcacctagt 120 cagcggtatc caagctttcc aacagtgctt tgcggtcccc acttttaatc cctcgtcgtt 180 gtgctgaagc cagcacaagt tgatggttgc ttgtattttt catcaaaaat acagctatga 240 gcatattagg agagtgtctc aggacatcat gaagtctttt ggggcataat tgagtgcttt 300 gcttatggat atttgcaagc aaaggtggat tcatgatgat tttttcttgt ttggctttgc 360 ctggatgaga aaataatttt ctaatgaatc accacagctc tcctaaatgc tgtcttttct 420 gaaaccaaat tgattccaaa attgtttaca ctgctattct gggtctgtat gacctggaat 480 tgatttgttt ggcttcgggg tgaaaagact tataaaaaac catctgactt tggggagagg 540 agtgttgact ggccctcccc tcgtgaattt tcccctggat ctcccagaat gctttgcaat 600 acgtaaagac attttcgtgg ttgtacaatc cttcaaggaa tggacattgt gttttgaggc 660 catggaaatg tacctggagg atcagaataa aggtatctat ttgtgtcttg agctgtgttt 720 gctgatctct ctcccttgtg tggtattttg agcgttttat tgagaggggt gattctgctt 780 ttctctcctt gttcgatttg agatttgtca aagaacctgt gctattattt ggcttaagag 840 tagatgccaa caccttggtt ggatgcatat ctgcaagacc atttatccct tagactgatg 900 cctgagtatc ttcatcttgt tgtgtttatt ttgaatttat gaattttttg ggttgtgggt 960 acttcccaaa gccggtacag gccggttgag gggtcaatgt g 1001 // ID DNA-X-7_NV repbase; DNA; NEM; 380 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-X-7_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP293; KW DNA-X-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-380 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-380 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-380 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Length of target site duplications varies from 4 to 9 bp. Copies CC are 83-93% identical to the consensus sequence. It shares common CC TIRs with DNA-X-6_NV. Originally, this family was reported as the CC unclassified NVREP293 DNA transposon [1,2]. XX SQ Sequence 380 BP; 117 A; 110 C; 73 G; 80 T; 0 other; ggggacgttg ggggggggtc taattaccgc aataccgcac aaaattttcg aaaataccgc 60 aataccgcag aaaaaaatcg gaaatatcgc ataccgcaca gaaggacgag gttttgaaga 120 gcatgcgcga caccccgaca tttcccaggt ttcccgctag atcatcccgt accagggcaa 180 atcccgcgca ccgcaggact aattaacacc gcaacaccgc aatattttaa ttttttaccg 240 caataccgcc gtttaaaaag caaaatctcg catctcgcag tgttttgaaa taccgcatca 300 ccgcatgttt tttgctcttt taccgcaatc tcgtacaaaa aagggccaat accgcaatac 360 cgcaaaaccc aacgtccccc 380 // ID DNA-2_NV repbase; DNA; NEM; 1237 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1237 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1237 RA Kapitonov V. and Jurka J.; RT "DNA-2_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 390-390 (2008). XX DR [2] (Consensus) XX CC TTAA or TA target site duplications. XX SQ Sequence 1237 BP; 378 A; 244 C; 274 G; 341 T; 0 other; ttaaggatac cgtagaccca agcggtaatt accccgatcg tcccggcaaa atcgctcgcg 60 ctcgcgtcgg attaaagcaa atgccaacaa actatatatc aatttaaagc ttaatgattg 120 tactttcctc ctaaaataat cattttttat acgcgcttaa ttttgagtgc ttttgcctgg 180 tccgaagtgc gaaatcgacc acttttaaac atgcgaatta tttatacaca ccaaaagcgc 240 gtaacctccc gggatctgct ttatatcttt cgtcatgtac tgaactgaca aaccgtgtct 300 acatttgacg tcacacagcc tcgttgatta ataatcaagg gtcaaagtta ggcgtggaat 360 aattttgctt ctttggctac aacgcgctaa ttaagtccgt agcaaaaaaa gctattgatt 420 atccgcggca cggtgtgaca gaacaatatc tatactagac gcttgccaag ttgcgcagga 480 atcgggcggt tagaagtgta cctttaattc acatatttag agtaagatgg ggtgaaattt 540 gattgcgaga tatcggggat tgaagttgtg taaacattag aggcagcgtg acagtaatga 600 cagacgaaga gcaaatagag ccgcgtatgg caaccaatca cattgcacgc tctacacgca 660 gcgggaaaac tcttaggcgc tcaaatgtca tagcgctagt cgtgcaagtg aaggaagatg 720 cctagaccga agcgagcttg caccgaagaa aagaagagcg cggaaaactt aaaaagaccg 780 cgaacggaga caactctatg ttttgggctt tcttcctcgc ttagccttct tcgaaggaag 840 ccaaggattc ttacttaatc ttggcgtagt ttacaactat gcaaaattta gagtaaacgc 900 ttataaagtt gatataaata cggataaatc tcggataaaa cgtcgataat gatactgacg 960 cgcttgtatg ctaattagag ggaaaagccg taaaactaag ttccccggat gttgatcgcg 1020 ggactttgag ctaagtaaac aggattatgg gattattgac gccttcgaga ataacgctac 1080 actcgttcga attcggtttt tcttgaatat ctggcggagt atttaagatt ttggtggtat 1140 ttttttgcta acatctagag tgtgcctatt gtcatcgaat ggcataataa aaaaatttca 1200 cccgaaatga agccatttgg gtctacggta tcgttaa 1237 // ID DNA-9-16_NV repbase; DNA; NEM; 1292 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-16_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1292 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1292 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1292 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-16_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1292 BP; 420 A; 209 C; 245 G; 418 T; 0 other; aacagggtga ctttttgtct gagcatgcgc atcacatccc atgtctaggg ccgagtagcg 60 agattcactc acgatgttta caaatatgtt gaacttttgg acctcaatta tctgctttac 120 gcacgcagga aggccttttt tcagaggatg tctatgtcag tatgctattg caaggtatct 180 atagagttca tttagcaatt cggctatttt atgttgcgtt tctcaacttt tgaatctctg 240 ggatatgcga ataaatcagg tcaaagagcc atggacggaa tattacattt gtgaattata 300 gaatctggaa ggtagaaacc aaagaattta taaacatatg ctatttcgtg atgtaaaagg 360 tttgttatta tcttaaactg ttgaaatcaa gcttagattc gcggagctag acttcggtga 420 attagtcaca aatttgtgaa attgcataaa attacaatta ttgaaaccga attactaaaa 480 catgcaggct ttgtaccaca ctatctcaac tctcggtgtg ttccatgaac attagcttag 540 atgggtagca tgattaattc attttgaaaa ttggggaata cgacgaaata agcacaatta 600 taataccaca taagagtttc agggctcagt actacgcata ctgtattgta cattatgaca 660 ttttgttaat aaaattcgtg actgaaaaac aaatcttgtt caagtttgag tatttggcta 720 gtgaatgaac aagagatcgg aatttgtagg aattgatttc gatagtattt aaatgaattt 780 tgattcactg tgtttgcaat aaattaaatc acaggaatct atcgcgttta tttggtttgc 840 gcaatacaca gagcgtgtac cacaggttct tcccttgtaa cataaacact gatatgtata 900 ctgtatacat cctttaaaag catatataac aaaattggat atctagcaga ttttagagga 960 aatatccaat gttctttgaa atggccatat tacaaattta agcaatttga tcgtttaaac 1020 tgtcatatat acgttaaaaa cattctcacg tagtttattt gcagctcttg acatttcccg 1080 gtaaatttgg ttgcaatcgg tgtaaaattc attgagaaat aaagctattt aagaaaaaaa 1140 aatcattttg agagcaagat ttggaatgta tacagaaatg cttcagtgat tcccggacaa 1200 tagtgaatta cgaacaacaa tggcgcgtta ttttgagccc gtgttacaag tggccagtcc 1260 aagcgcatgc tcctgcaaaa agtcaccctg tt 1292 // ID TE-31_NV repbase; DNA; NEM; 972 BP. XX AC . XX DT 28-MAR-2011 (Rel. 16.03, Created) DT 28-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-31_NV non-autonomous transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVRER417; TE-31_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-972 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-972 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-972 RA Kapitonov V. and Jurka J.; RT "A family of TE-31_NV tranposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (28-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 972 BP; 301 A; 177 C; 209 G; 285 T; 0 other; taatatatga aaaacgagtg cgagtgtttc atcagggatt ccaaacaccg agagagatga 60 aagcacgagg ccgtctgcgg ccgagtgctt ttatcgtgtc gaggtgtttg gaatccctga 120 tgaaacacga agcacaagtt ttttatatgg cttctcaaag tattcaccaa agaatgtcac 180 gatgtaatcg caattttgcc ctaattgtaa aaggcggcat gaacggaacg caaaactgct 240 tttcaaacta ttgaccaaac aatgccgaga agtttgtgtc caatcacaac ctgctttttc 300 tcaagggaaa tacaattagt acattttgtt atttgttatg cgacgcaaga ttattcattc 360 ggcgagagaa gcttgagcta tggccgaagg tttagcggcc aaccgttttc gttctcccaa 420 gtgcggagag gacgaaaaga cattggttaa agccagcatc ccaaagtcta caatgtacag 480 gagtacaggt tagcaaagtt tccaatcttt tagggccaga aagtaaagtt tctgagaagg 540 aagaaacggt caatattcag agtttggagt cggagtgtaa taaagtagac caaggcttaa 600 gttcaatttt acactctgca tcattcattt tcaaattgtg aggttaacat aattgtaaac 660 gaaaaaaagt aggactacct gctgtttcct aggcttgatt tggtttcctt gatttaacca 720 attgcccaat tgtgtgatta aaattatgat aaataaagtt gtcattgatg ttattgttct 780 atatgggtca catgcatgga tcttgatatc caatgagaac ccagatgaac atcactagtg 840 gtttggatca catatccaaa tcactagtga tgttcatctg ggttttcatt gggtatcaag 900 acccatgcat gtgacccata tcctctccac tcattggcta atgcatgcat gaataattaa 960 tgagtttgag aa 972 // ID BEL-10_NV-LTR repbase; DNA; NEM; 570 BP. XX AC scaffold_1; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: long terminal DE repeat. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-10_NV_; KW BEL-10_NV-I; BEL-10_NV-LTR. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-570 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-570 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_1; Positions 659738 659169. XX SQ Sequence 570 BP; 154 A; 125 C; 101 G; 190 T; 0 other; tgtccgatgc ttcaatgttt tcgttatcac ttagctatat caacgcacgc ttaagattat 60 gattagctct caacattttg atatttaaag gaaaaccgct gtttagctcg ttagtttatt 120 ttacgatcct gtcttagccg catctagctt ttcctgttgt aatcactttg gaatgcgttg 180 tatcctctat tgggacacgt tcggtgccca cattattcac tcagccaaag ccagcaatca 240 ggaagcaaca gcgcttaaag agttggagaa ctctattatt ttacagtcca gaacagacgt 300 aagtttctaa gctcagctct tgccattttt gtctttatct gaatttatta gaaatcattg 360 taaatattag aattgtaatt ttctgtaatt atttcgctcc ctagtttttt taccgcatcg 420 tgcctgtgat tctgtaactc tgccagccaa gtaataaagc cattacaaaa accagtttgg 480 gctcagtttt acacactacg cgaagtggtt aatgctagcg aacttggtcc tcaacacacc 540 agcgtgtctg actaaaccgg gaacgcaaca 570 // ID DNA-7-6_NV repbase; DNA; NEM; 204 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-6_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-204 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-204 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-204 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 204 BP; 60 A; 37 C; 48 G; 59 T; 0 other; cacagggagc ccaagctcac agttagtggt ttttgggttt gtgaaaaaat aatgtagagt 60 gaggtagggg tgaccgaatt ttacgaaact tcacagaggt aattaaaatg atcacttcta 120 accgctcggt gagtttcgtg tgtttttatt aagaatttct cacaaaaccc aaaaaccact 180 aactgtgagc ttgggctccc tgtg 204 // ID Kolobok-N4_NV repbase; DNA; NEM; 237 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N5_NV; Kolobok-N4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-237 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 349-349 (2007). XX DR [1] (Consensus) XX CC Kolobok-N4_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N4_NV transposon CC is characterized by 33-bp TIRs (1 mismatch) and TTAA target site CC duplications. This family is composed of a few copies that are CC less than 10% divergent from the consensus sequence. XX SQ Sequence 237 BP; 78 A; 42 C; 45 G; 72 T; 0 other; agggtccaac tcaccctgcc cacagtgcat tgcgatggcg gccatttttg atgccatcga 60 aattcaaaac ttttgagaaa atgagaaatt atttaatatt ctttcaattt acatgcttta 120 ttcataaaag atagaagaaa agtgtgtaaa aatttctatc cacgtgcatt ttttggactt 180 ttccatgatg aaaacaaaaa caaagcaatg cattgtgggc agggtgagtt ggaccct 237 // ID L1-1_NV repbase; DNA; NEM; 5297 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone L1-1_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5297 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5297 RA Kapitonov V.V. and Jurka J.; RT "L1-1_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 605-605 (2007). XX DR [2] (Consensus) XX SQ Sequence 5297 BP; 1822 A; 939 C; 1078 G; 1458 T; 0 other; tttgtaaatg gcagccgaag agtagtcacg cttttcgacg gctccggctt tcttgagtaa 60 ttttttcttt tcaaaggcgc tcagagttaa aaacctgctg gcaccgaaca gagagtttcc 120 catattgttg aaaatggctt ctggcgcaac tgaaagtgtt ttacagaaaa tatgcgacac 180 gctggaaaga gtagagaaac gggtgagagt gatagagaac agcgttgcct gcctcgaaga 240 acttagaaaa gacgtaaaca acatgaaaat cgagtgtgaa aaattcaaag atggcctaac 300 cgaccttgaa acgggtgtgg gcagcataga ggaggatgtc gctgaaataa cagaaaggtt 360 agagaccgta gcaacgagag agacgacaga ccaactactg accagagttg aaggtctcga 420 gaacaggtcg cgtagaaata atattatcat tcacaacgtt ccggaagagg cggaaaaaaa 480 ttcaccctca gccattgatt tcgtccagaa gttcctcagg aacgagctag aaatacagca 540 acctatcgaa gtcgagcgtg cacataggtc tcccaacaag aaacgccatg acggatccgc 600 aaggccgata ttcttccgac ttttgcgaga gagtgataag cggaatgttc taatggcagg 660 cgctacaaca cttaaaggga aggagctaaa gaagaggaac aagaaagagc gaattttcat 720 cactgacgac gtgacggaag cggtacaaaa acaacgaaag caattatgga agcgcttcct 780 tgaattaaag gcttcgagac aagcaccaaa catgagaggc tacacgatgt ggtcggttcc 840 agcagccgtc aagtaccagg acaccgataa agtttggagg tatattcgtt gaaaggactt 900 taaataacat atttacgctc aatggactat atttattttt ccctatttga acttgttttt 960 ttgttttcaa agactgatga acattattag tatagggctg atcaatataa tgagccgccg 1020 tcaaataagc tatggaaaag ccgaaatgct gggtcaatga caattcttgt ccgacctact 1080 aaaattgata tttatgtgtt tgtatttaca tgtgttctat gtttagtgtc tgtattgtct 1140 ttgtatgttt cgtgttctgc agacttctgc tttgaaggaa tatttattat ccacgcgttt 1200 ttcctggtta ctattttggg ccaaagatgc caaactattt ataaatcgtc gcgatgattc 1260 taaatttact gtcattaaac attagagggc taaatatgtc aaggaaacgc aggaaagttt 1320 tcagatggct tcatttacag agaaaggata tatatttttt acaagaaaca ttttcttcaa 1380 aacataatga gtcttactgg aatgcggagt ggggcgctaa ttgcttcttc agtcacggca 1440 ccacgcactc aaaaggagta atgatccttt tcaatccgaa acttgacatt actgtcaaat 1500 cgagtttctc tgacccaaac ggccgtttta tattgttaga ggtatctcta gatggagaag 1560 attttacgat cctgaacatg tatgcaccga acgataacaa acaacagtgt gatttttatg 1620 acaaaattgc aaaggtacta aaagatgcac agtcatccaa tctgatagtt ggcggagatg 1680 caaattgcgc gctatcccag ctagatagat ttgggtccga ctggggaaag tacaaacaaa 1740 acaaaaaaag tgttatcaaa gcaatcagat ctttacaact gtccacttca ttaaaagacc 1800 cctttcgaca tatacatccc gacgaagcaa cgtatacttg gagaaacaaa tcatttacac 1860 ggcaaagtcg cattgactac tggcaaatat cagaatcact tttaaatgag gttagagagt 1920 gtaaaattat tgatgccgca tctacggatc attctgctat ttgtttgagt ctcggaaggg 1980 accccgcaaa gaaacgaggc cctggatttt ggaagtttaa caacgcgttg ttaaaagatg 2040 aatcctttgt tgaaaagatg cgagaaaaga tcccggtttt taagcaaaaa tacaccgaac 2100 ttcactatga taaaggacta cagtgggaaa tgttgaaaat ggaaataaga tctttatgta 2160 tacagtacag caaacgcaaa aggaaagact gcagaaacaa agagttagat ctcataagaa 2220 acgtaaatag tttacaaaga atagctgaac aagctccaac acaagaaaac gcctctaaat 2280 attatgctca gaaacaaaaa ttagataata tcttagaaga gaaaacaaga ggatgtatca 2340 tacgcagtaa aagtcgttgg tatgaagagg ggggaaaaaa ctcgaaatat tttttaaact 2400 tagaaaagaa aaactacact agtaaatgga tacaaacaat agaattgaac gatggcacaa 2460 ttgtttctga ggaaaaggaa attttagaag cggaaaaaaa cttttatgaa actctgtaca 2520 aatcgtccct agacaagtcc aacttgccag acgatttgga tatctttcac accaatgaga 2580 atttaagaaa actagagaga ctacaggccg agagctgcga aggtttactt tctccggaag 2640 aatgtcttga agttttgaaa aacacccaaa ataataaaac acctgggtct gatggcttgt 2700 cgtatgaatt ttaccgattt ttttgggatc aaattaattc tccccttgtg gaaagtttta 2760 atcatgcatt tcgaaccggc aaaatgtccg tcgaacagag aagaggcgtc atatctctca 2820 ttccaaagaa agataagaac aagaaaaaat tagagaattg gcgaccggta acactactaa 2880 acaccgatta taaaatagcg accgctgcta tagcacaaag aataaaaaag gtgctccctg 2940 ctattattcg accaaaccaa acgggttata ttgaaggcag atttattggc gaaaatattc 3000 gattaatcaa tgatatcctt tattatactg atcaacaaaa gctttcagga attgcgcttt 3060 ttatcgattt taaaaaagca ttcgatagcg tcgagtggtc atttttgcgc aaagctttag 3120 aggcgatgaa ctttggccct gatgttgtta agtggttttc ggtattttac aaccagacat 3180 caagttgtat tataaataat gggattgcgt ccgagttttt ttctgtacaa aggggtgtca 3240 gacaaggttg cccgctatca ggaattcttt ttgcagtagc catcgagcta cttgtttgcg 3300 caatacagca cgaccctaat attaaaggaa ttactgtcaa caaaaatgag attaaatatt 3360 ctatatacgc agacgatttg actgtctttt taaaagacgc atgctccggc gagaaattat 3420 tcgaactgtt gaataagttt aaacgtgtgt ccggtttaga gattaataaa tccaaaactg 3480 acgcactatg gcttggtcgc gataaagaga agcgcgagac tccattgggt gtgaattggc 3540 ctaggcatcc gattaaagct cttggttgcg ctttctcgta cgacaatgaa atgaacgaca 3600 agtttaattt tgaagacaaa gcggaaagtc tacaaaagct gctgcatact tggaagggtg 3660 gaaatctcac cttactcgga aggataaata ttgttaaaac tctgggtttg tcaaaacttg 3720 tttactcaat gacctcacta gtgtcgccgc ccgggtttgg taagaaaata gatagcatca 3780 ttttttactt tgtttggaat ggtaaaaccc acaagataaa gcgatctaca ctaatcggag 3840 agaaaaaaca cggcggcctg aacatgattg atttcaatac ttttgaaagg tctttgaaac 3900 tatcatgggc caaacgtttt ttaagtgatt ctatcgcacc atggaaaatc attcctcttc 3960 attatctgca gaaattcggg gggactttca tgctcttttg taactatgat gtctcacttt 4020 taagcacaga atgtcataat gtcattccca ctttctatac cgtctttctt aaatactggg 4080 caaatatagc agatatagcg gaagaacagt ttggcccatc ccgaagatgg tataatgaca 4140 taatatggaa taataaaaat attaagatag gaggcaaaac tgtgtactat aggaaatggc 4200 atcaggcagg cataacatat attcacgatc tctattctgc tagaggagaa atgattccta 4260 tctcagaatt tcaaacgtcc cacgatttag attgcaattt tcttacaatc atgggagtgt 4320 ataatgctgt ttcccattac gtcaacaaag cagcgatggc agatgacgag caaccaatgg 4380 atgaggttaa agcttttaac caaaaggcac tcctggaact aggtaactta acatgcgccg 4440 cacaccgaaa attacttgtg acagcagctt tcgccgcccc aaccgctgaa aaacgaatat 4500 tagactctgg agttcctttg accgaattag aagatgttta tgctttacca tttaaagtca 4560 catctgaaac ctttctaaat gtgtttcagt acaagatagt gcacaatatt ttaccctcta 4620 attctctttt attcaaaatg aatctttctg aatcgccaaa ctgccagttc tgcaatgaac 4680 tgcacaatct agaacatatc tttgccaaat gccgaacggc tattgaattt tggtctcatt 4740 tcttgaaatg gttcagggat aagtctagtt tggagattct tccttcacct agagaaattt 4800 tgtatgggta taagccaaag gaaaaaaggt ttataggagt aaatcacgca ataatcattg 4860 caaaatatag tatttttaga aatttctcaa acaaattggc tccttctttt gaagcttttc 4920 tttccctttt taatgacaag ttaaatattg agagcggtat agctagggaa aatcacaaag 4980 agaagcagtt caacgaaaag tggaaaatgt ttttgaaata agtttttttt tctcctcaag 5040 cagcatgtct gcctcctcct tcgcgtgttt gtgtgtagtg tgatgtgtat acgtattcgt 5100 aaattcccgt gtacttgtaa tgtaaaagaa aagtaaatgt aaaaaaaaga aaaagaataa 5160 gaaatacaaa aaaaaggaat aatgtaacaa gtataatgta aaaaaaatgt aaaaaagaag 5220 aatgtaaaaa aaagagagat gttgtaaaaa aaaaaaaaaa aacttgtaca cggaacaata 5280 aatatgtatt aaaaaaa 5297 // ID Kolobok-N4A_NV repbase; DNA; NEM; 236 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone Kolobok-N4A_NV non-autonomous DNA transposon DE - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Kolobok-N4A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-236 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-236 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-236 RA Kapitonov V. and Jurka J.; RT "A subfamily of Kolobok-N4A_NV non-autonomous DNA transposons RT from the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 236 BP; 71 A; 46 C; 44 G; 75 T; 0 other; agggagcccc gcaacctacc catgatgcat tgctttggcg gccattttct ttgccaacga 60 aattcaaaac attttgcaaa atcaaaaact actatatatt cttgtacatt tacatcccct 120 cactgtaaaa agtgtagaaa agttggtaaa agtgtcttta tgtggattat tctatacttt 180 ttcatgatga gaacaataac aatgtaatgc attgtgggta ggttgcgggg ctccct 236 // ID Copia-2-LTR_NV repbase; DNA; NEM; 231 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Copia-2_NV autonomous LTR DE Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2-I_NV; KW Copia-2-LTR_NV; Copia-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-231 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-231 RA Kapitonov V.V. and Jurka J.; RT "Copia-2_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 381-381 (2007). XX DR [2] (Consensus) XX SQ Sequence 231 BP; 72 A; 31 C; 47 G; 81 T; 0 other; tgttggaaac atgatagcta atgctgatgt cataatatgc aaatcagata aaggactctg 60 catcatgatt ggataattaa gtgctatgca tatcatgtga tttttagata gaagctcctt 120 gtgggcttat gtaaatactc ttcttgattg tagcctttga gcgagttagt aaagtaatag 180 ttatcggtga aactacaagg tttctgtctg tatatccaga atattttaac a 231 // ID BEL-3-LTR_NV repbase; DNA; NEM; 282 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone BEL-3_NV autonomous LTR DE Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-3-I_NV; KW BEL-3-LTR_NV; BEL-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-282 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-282 RA Kapitonov V.V. and Jurka J.; RT "BEL-3_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 369-369 (2007). XX DR [2] (Consensus) XX SQ Sequence 282 BP; 105 A; 48 C; 49 G; 80 T; 0 other; tgtcggagat tgagcaatcg tgattatgta aattattcct gagatctaat tatctaaact 60 atttttaatt aagagattag ttgatcacaa tagatacttg ttgcagctgt gtaaatagac 120 gcctagcctt ttcctgataa aacggtatga aacacgctgg tacgacagaa cgatagaacg 180 agaagacagt gaacagagac agcgagcaga tcaagaaatc aactgtaact actacaaaat 240 cattatccat cttcaaataa atgttctttt aaattcacaa ca 282 // ID Gypsy-49-LTR_NV repbase; DNA; NEM; 97 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-49_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49-I_NV; KW Gypsy-49-LTR_NV; Gypsy-49_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-97 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-97 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-49_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 532-532 (2007). XX DR [2] (Consensus) XX SQ Sequence 97 BP; 25 A; 31 C; 16 G; 25 T; 0 other; tgtaatatcc tagcgccctt gcacactcat accgctgacc aataaaactc agttgacatc 60 caagatcgcg tcccccatgt agcgtccggt tatttca 97 // ID Harbinger-N18_NV repbase; DNA; NEM; 738 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP101; Harbinger-N18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-738 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 176-176 (2007). XX DR [1] (Consensus) XX CC Harbinger-N18_NV is a consensus sequence of a very old family of CC non-autonomous Harbinger transposons. The Harbinger-N18_NV CC transposon is characterized by 24-bp TIRs and 3-bp target site CC duplications (the TSD size and classification are not very well CC established). XX SQ Sequence 738 BP; 196 A; 169 C; 179 G; 194 T; 0 other; agccctgtgc aaactgcgcc agcacccgcc agcattgctg gcccagcaat gctggcggag 60 tgctgggccg gagttaggcc ggtgtgcaaa ctgccccaac acatggccag catgttggta 120 ataagttcat gcgtgactgg cgtttgatgc atgacaggac caaaggcaac ccaagactcc 180 atcattttac ttgtgttttc aaaaggcaac ccaagattcc gctggattcc ggttgaattc 240 gggtctattt gtcccctgat gttgtagcgg tcgtcatttt tacgactacg agtgataaga 300 ggacgataaa aaaacaatga atttaatctg ataattagaa agtagcacgt gggattgtgt 360 tctgcatgat acatttcagt catatatcgt tttcacgacc aaaaatttgc gatgttttct 420 ttgattatag atgtggtaag gtttattctt tttgaaatga cagcattatt cggacgcgag 480 ctattttttt tctatgaaaa cgatgcaaat gagcccagca ttgctgggtt cgtgtgcaaa 540 ctgcgccagc aaagctgtga tatgctcgaa tgaccacgag acaaaggaga tgctggcaaa 600 gtgttggcca aaagtttgaa ctcaatcaaa atttcgccaa cactcgccag ccagcacctc 660 ccaacacggt gttcaaactg cgccaacatt gctgggccaa cgtctcgcca gcaatgctgg 720 cgcagtttgc acggggct 738 // ID DNA-6-8_NV repbase; DNA; NEM; 411 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-6-8_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 6-bp TSD; KW NVREP41; DNA-6-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-411 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-411 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-411 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 87-93% identical to the consensus. It was reported CC originally as the unclassified NVREP41 transposable element CC [1,2]. XX SQ Sequence 411 BP; 108 A; 80 C; 109 G; 114 T; 0 other; caagggcaca aaacggatct gttccgcaaa atatctgttc cgcagcccgt ttttttttgc 60 tggctgggaa gatgttagac ccctcggttg ctggggaaaa aaatcgtccc gaatggttct 120 gctggcaaat ttgtggagtc gaactagttg tgctgggaat atttttgggg cgctggagcg 180 gatgcttggg aaaaaatcgt cccgatcggt tatacgggca attattcatg tgctaaaatg 240 cctaaccact gctggctggg gaaaaaagga atggtccctc ctgggaaaaa ggaacagata 300 attttttccc agcaactttt aaaatggata ttttcggcat cagaacatat tcaaacgacg 360 aaatatgcca ttttaacgtg tttcgggaag ggggctcgtt gtatgccctt g 411 // ID RTEX-2_NV repbase; DNA; NEM; 5419 BP. XX AC . XX DT 31-MAR-2009 (Rel. 14.03, Created) DT 31-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone RTEX-2_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; CR1e-2_NV; KW RTEX-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5419 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5419 RA Kapitonov V.V. and Jurka J.; RT "RTEX non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 723-723 (2009). XX DR [2] (Consensus) XX CC This non-LTR retrotransposon belongs to the RTEX clade, a sister CC clade of RTEs. Contrary to RTEs, RTEX elements code for the ORF1 CC protein that contains the esterase domain, similar to ORF1 in CC some families of CR1 and L2. XX FH Key Location/Qualifiers FT CDS 2..1759 FT /product="RTEX-2_NV_1p" FT /translation="MADIVGITEHKKLLSINKKKQFRWSGDSDQLKEFLLS FT YLEEGNNDKFVSISRNGATSVLKFESVTVNFYTSTNTLQIQGAGKDGYISK FT LTDLVNTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEE FT IEAFMATQREFNSKIESQVSKNTIEIGEQSIDLEDWKQKIKNGLSDVKMHC FT ESQIDSLKFEISESIKDVAKQVSNLSNKVTSEFKSVKNKSASTAETILKIL FT GDLGEIKDQLLKTEETVAQIHETTQSTHSREQTDAIEVCSQETSESHRIEI FT LDQSRQSGQREAIDINRQYASHRNSRLETPRDTSSHPRTQQRENRPNQPSS FT AAQTSGSSNGPVLLLGDSVLRGINNRRFCPSRFVNKQYVQGGTQEMEEYID FT SLTKEDKNDYECIVVHSGVNDLRKSRATDIADNMQRCVQKLKSRWPKANIY FT VSGVLYSLKGDNVKVDDVNYYYEEICRNNQGLCNFINNQKVTADRFGNIDE FT DSFYDDIHLNNRVGTKKLVTNIKVQVGLRSEDKESNREGQQARKFNRQRRQ FT RPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGFAHRPR" FT CDS 1861..5283 FT /product="RTEX-2_NV_2p" FT /translation="MLKFNDTLSTIKRHDIFGIVETHANQNSDLKINNYKH FT FVKHRDSTRYKKSGGIAVYIRENISSGVKYIPTDNENVLWVKVCKNIFNLQ FT KDIYLGTVYLSPANGRCNNYEEDILEELEFEILRLSLKGDVIIQGDFNART FT GILQEFALDDEQNDEFMGLPKDYQIDIPNNRNSQDSKVIDSRGRNLIETCT FT ALNMRILNGRVVGDLEGKKTCFRYNGSSVVDYIIVNNESLDIVDYFIVNPL FT EPHLTDHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNNEIGSESKLLF FT ESEEVQTNLNAALNNNCVDTSVDLFTETLLSACENAGLRYQNNDIKESSVN FT KMWFDKECKNEKENLRSLGKLLSKQPDQRELGAVLKEKKKSFKKLCRRKKY FT THYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQ FT LNATIESQNTMEEVEKTRINNRQGPLDHEFTELEITNAIKSLKTGKAPGAD FT NILNEVLKCGEETLKKPLQILFNKILNSGEYPSSWSYGLIVPILKKGDPSK FT PENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQGGFRKEHGTVDS FT IFILKSLIDKYVKAKPKKKQNFLFTCYVDFSKAFDRVPRHKLFDKLERSGV FT TGRFLEVLKSIYTNDKSSVKIRNLLTPAFRCYNGVKQGCMISPTLFNFYLS FT SLSEELNTVRNCNDVELNSRPISCLLYADDLVIVSKTATGLQKYLDKLSEF FT CDEAKLTVNLEKTKIMIFNNSGKTMNNYLFKYRNSKVDIVKSYKYLGVHFS FT TFGNFSLAKQEIKKVGLKALYKLRKEMGNHFRDKITLTLRLFDTLVTPILL FT YSSEVWGTDCNDKLEKDPIESVHTRFIRWLLGVNRYCSSNACRSEVGRFPM FT RLKAKCRAIKYWQKMINSDHSKLAVLAFLDSLENNSKVTWVHKLKNILERA FT GLGYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRRDPRQKNKLRTFR FT TFKVVYELEKYLTQINNVQHRIAVTKLRLSNHNLAIETGRHAKPYVPPNER FT RCTICKNGIENEEHFLVKCPTYNAIRKAYYSVIKDKTNINLNAMTSERAFL FT FIITMDQRNEIINRETAKYIFDCTRKRFECLKE" XX SQ Sequence 5419 BP; 2062 A; 951 C; 1085 G; 1321 T; 0 other; catggcggac atagttggga taacggagca caagaaacta ttaagtatta acaagaaaaa 60 gcaattcaga tggagcggag actctgatca actaaaagaa tttctgttgt cctacttaga 120 ggaaggaaat aacgataaat ttgtcagcat aagtaggaat ggagcaacaa gtgtacttaa 180 atttgaatcg gtgacggtta atttctacac cagcacgaat acactccaga tacaaggtgc 240 gggtaaagat ggttatatct caaaactcac cgatctagta aacacaaata gtggcaataa 300 caaaaatgct gagaccgaaa ctgatcaagc agaagcgggc gaagagatat cacaatcgag 360 caagaaacag gacgaagaga aaggcgaaaa agcgatgcat gatgctcgct atgaagagat 420 cgaagctttt atggcaactc aaagagagtt taactcgaaa atagaaagtc aagtttccaa 480 aaatacgatc gagattgggg agcaaagtat tgatttggag gattggaaac agaagataaa 540 gaatggtctg tccgatgtga agatgcattg tgaaagtcaa atcgactcac tcaagtttga 600 aataagcgaa agtattaaag atgtcgctaa acaagtctcc aacctgtcaa acaaagtaac 660 aagcgagttt aagtccgtca aaaataaatc tgcatcaaca gcggaaacaa tcctcaaaat 720 attaggcgac ttaggagaaa ttaaggatca actcctaaag acagaagaaa cagtggcgca 780 gattcacgag accacgcaat caacccactc acgcgaacag acggacgcaa ttgaagtatg 840 cagtcaagaa accagcgaaa gtcaccgaat tgaaatactt gatcagtcac ggcaatccgg 900 tcagagagag gcaatagata taaacagaca gtatgctagt cacagaaaca gccgacttga 960 aacacctcgg gatactagta gccacccaag gactcagcaa cgggaaaatc gccccaatca 1020 accaagcagt gctgcgcaaa ccagtggcag tagtaatgga ccagttctac tactgggtga 1080 ttccgttctc agaggtataa acaaccgtag attctgtcca agccgatttg taaataagca 1140 atacgtacaa ggtggaacgc aggaaatgga ggagtacatc gattcgctta caaaagaaga 1200 caaaaacgac tacgaatgta ttgtggttca ctccggggta aatgatttaa ggaagtctag 1260 agcaacagac atcgctgaca acatgcaaag atgtgttcag aaattaaaat cacgttggcc 1320 gaaagcaaac atctatgtgt cgggagtttt atacagtctc aagggagaca atgtaaaagt 1380 agatgacgta aattattatt acgaagaaat ctgtcggaac aatcagggat tatgtaattt 1440 catcaacaat caaaaagtca ctgcggaccg atttggaaac atcgatgagg actccttcta 1500 cgatgacatc cacttgaaca atcgagttgg taccaaaaag ttagtgacga acatcaaggt 1560 acaagttggt ctgagaagcg aagacaagga atccaatcga gaaggacaac aagctaggaa 1620 atttaacaga caaagaagac aaagaccccc atggaattca agctataatg aagcatttcc 1680 gacacttcca ccacctttcc gagcacttga cgcattggcg gaatatttca aaagacaggg 1740 gtttgcgcac cgtccaagat aagtgcatat gtttaaataa tttaattcac atgtaatcag 1800 aaaaagattc gttttggttg ttggaactta aacggtttca acagtagggt tgtgggaaat 1860 atgttaaaat ttaatgatac tttaagcact attaaaagac acgacatttt tgggatagtg 1920 gaaacgcatg caaatcaaaa ttccgatctc aaaataaaca actataaaca ttttgtaaaa 1980 catagagatt caacaagata caaaaaatcg gggggtatag ccgtgtacat cagagaaaat 2040 atttccagtg gagttaaata tataccaaca gataatgaaa atgtcctatg ggttaaagtg 2100 tgtaaaaata ttttcaactt acaaaaagac atttatttag gaactgtgta tctaagccca 2160 gcaaacgggc gatgtaataa ttatgaagaa gacattctag aagaacttga atttgaaata 2220 ttaaggctct ctctaaaggg ggatgtcatt atccaagggg actttaatgc aagaacgggt 2280 attttgcaag aatttgctct ggatgatgaa caaaatgacg aatttatggg tctaccaaaa 2340 gattaccaaa ttgatattcc aaataataga aattcacaag actctaaggt gattgacagc 2400 cgaggaagaa atttaataga aacgtgcact gcactcaata tgcgaatttt gaacggcaga 2460 gtagtaggtg accttgaagg taagaaaacc tgctttcgat acaacggaag cagcgttgtt 2520 gattacataa ttgtaaataa tgaaagttta gacattgttg attatttcat tgtgaatccg 2580 cttgagccac acctgactga tcactgttcg ctttcatgca gtctaaacct gaaatttaca 2640 tttaaacaaa aggataattc agaaaacgta caactaagtg agctcaaaag attgcgctgg 2700 aataacgaga tcggtagcga gtcaaagcta ttgttcgagt ccgaagaagt gcaaacaaat 2760 ttaaatgcgg ctttaaataa taattgcgta gacacatcag tagatctttt tacagaaacg 2820 ctcttatccg catgcgaaaa cgcaggactg cgctaccaaa acaatgacat taaagagagc 2880 agcgttaaca aaatgtggtt cgacaaggaa tgtaaaaatg aaaaagaaaa tttacgctca 2940 ctaggcaaat tactttcaaa gcagcctgac caacgcgagc taggagccgt cttgaaggaa 3000 aaaaagaagt cttttaaaaa actctgtagg cggaaaaagt atacgcatta taataatata 3060 gtaaacagta tcgatttcag aaactctaaa aacacttgga aacaaataaa taggattttc 3120 aacagcaata cacataaaca atcacatcaa attagacccg aagaagctgc tgtttttcat 3180 cagcacttcg aacaattaaa cgcgacaata gaatcacaaa atacaatgga agaagtagaa 3240 aaaacgcgaa taaacaatag gcaagggcca ttggatcacg aattcacgga actcgaaata 3300 actaacgcca taaaaagtct aaaaacgggt aaagcacccg gcgctgataa tattttaaac 3360 gaagtattaa agtgcggcga agaaactctg aaaaagccat tacaaatttt gtttaataaa 3420 attttgaata gtggggaata cccatctagc tggagttatg gtctgatagt accgatcctg 3480 aaaaaaggag atcctagtaa accggaaaat tttagaggta ttaccttact ctcgtcacta 3540 ggaaaagttt tcacatccat aatgaacaac agattgtaca attaccttgt cgaaagaaaa 3600 ataatcaaac ctgagcaggg aggattcaga aaagagcatg gaacagtgga tagtattttc 3660 atcctaaaat ctttgattga caaatacgtt aaagcaaagc caaaaaagaa acaaaacttc 3720 ctatttacgt gttatgttga tttcagtaaa gctttcgaca gagtaccaag acacaaactt 3780 tttgataagc tagagcgttc aggcgtaaca gggcgatttc ttgaagtttt gaaatcaatt 3840 tacacaaatg ataagtcctc agtcaaaatt agaaatctgt taacgccagc ctttaggtgt 3900 tacaacggag tgaaacaggg atgtatgatt tccccgacac tatttaattt ttatctcagc 3960 agcttgtccg aggaactaaa tacagtaaga aattgcaacg atgtcgaact caattcacga 4020 cctattagtt gtttacttta tgccgacgat ttggtaatcg tctcgaagac tgccacgggg 4080 ctacaaaaat atttagacaa actaagcgaa ttttgtgatg aagcaaaact cactgttaat 4140 ctagaaaaaa ctaagataat gatatttaat aactctggga aaacaatgaa caactatctc 4200 tttaaataca gaaacagtaa agttgacatt gtcaagtcat ataaatacct tggggtgcat 4260 tttagcacct ttgggaactt cagcctagca aagcaagaaa taaagaaggt cggactaaaa 4320 gctttgtata agcttcgaaa agaaatggga aaccacttta gagacaaaat aactctaaca 4380 cttaggctct ttgataccct tgtaacccca attctattat atagtagcga ggtgtgggga 4440 acagactgca atgacaaact agaaaaagac cccatagaat ctgtacacac aaggtttata 4500 cgttggctgc taggcgtcaa caggtactgc agttctaatg catgtagatc cgaggtcggt 4560 agatttccaa tgcgtttaaa agccaaatgt agagcaataa aatattggca aaaaatgata 4620 aattctgacc acagtaaact tgctgtgttg gctttcctag attctttaga aaataacagc 4680 aaggtaactt gggtgcacaa actgaaaaac attttagagc gagcaggctt gggctatata 4740 tggcttgatg ccccaaacac gtctataaat ttaataaaga tgcgctttga agatatcgag 4800 cgacaggtgt ggctaagtga gattcacaat gatagtagaa gagacccacg ccaaaagaat 4860 aaattgcgaa ctttcaggac cttcaaggtg gtctacgaac ttgaaaaata tcttacccaa 4920 attaataatg tacaacacag aattgccgtc acaaaattaa gactaagcaa tcataatttg 4980 gccatcgaaa caggtagaca tgccaaacca tatgtgcccc caaatgagag gaggtgcacg 5040 atttgcaaaa atggaataga aaacgaagaa cactttcttg taaaatgccc tacatacaac 5100 gcgattagaa aggcatacta tagtgttatc aaagacaaaa ctaatatcaa cttaaatgca 5160 atgacatctg aaagagcttt cctttttatt attaccatgg atcaaagaaa cgagatcatt 5220 aacagggaaa ctgcaaaata tatttttgac tgcacaagaa aaagatttga atgcctaaaa 5280 gaataaatgc acaccacgga taatgacaac ctccttttta tcttaactat ttggaaaaac 5340 acctgatata taatcatgta taagggtacc aaataaaata tattgattga ttgattgatt 5400 gattgattga ttgattgat 5419 // ID DNA-7-14_NV repbase; DNA; NEM; 1145 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-7-14_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP45; DNA-7-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1145 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1145 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1145 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-14_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP45 unclassified CC DNA transposon [1,2]. XX SQ Sequence 1145 BP; 326 A; 238 C; 249 G; 332 T; 0 other; cacaggcttc ccacccgcgt cagtgaagga tttctaagga catacgaatt cacgcaaata 60 aacatctatg agttatatct tcatgctcta ttcatgaaat aaacttagtt gggatgtaaa 120 tgtatccgtc tgtggtgttt tttcttccca agaagctcaa ttttacgagt ttagagcgat 180 ataactttgt ctcggatttt gagtcgatac taagtatgtt aatgagacaa ggctggcaac 240 tttattctga ctacctcagc ttcagcgcga ttttctgccg gattttaagc agtacgaaat 300 cactgacacc ggtacaggat gggagaggga tggaactatc cccgaatcga gtttttaagc 360 aatccgccta aaaacctgcg agaaataatt ttttgaacgt caattttagc tttccgtcga 420 tgatcgggac atagcagctg gtcaaatggc atccttggaa tgtaatttgc atagacagct 480 tagccccaca ccaccctaga cccgacttgt ctttgtcata gtttcctcac taacatctaa 540 attgtgagtt gttgtgtgaa acgtaacttg tacagctatg gggagtacat gcggactgtc 600 gacgtttgcg acctgtcgat ctagaagagg gatggagaag ggacaatgtc tagggtggtg 660 tggggctacg ctgtctatgc aaattacatt ccaaggatgc catttgacca gctgctatgt 720 cccgatcatc gacggaaaga aattgacgtt caaaaaatca tttctcgcag gtttttaggc 780 ggattgctta aaaactcgat tcggagatag ttccatccct ctcccatcct gtaccagtgt 840 cagtgttttc gtactgctta aaatccggca gaaaatcgcg ctgaagctga ggtagtcaga 900 ataaagttgc cagccttgtc tcattaacat acttagtatc gactcaaaat ccgagacaaa 960 gttatatcgc tctaaactcg taaaattgag cttcttggga agaaaaaaca ccacagacgg 1020 atacatttac atcccaacta agtttatttc atgaatagag catgaagata taactcatag 1080 atgtttattt gcgtgaattc gtatgtcctt agaaatcctt cactgacgcg ggtgggaagc 1140 ctgtg 1145 // ID Gypsy-79_NV-LTR repbase; DNA; NEM; 154 BP. XX AC scaffold_8; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: long terminal DE repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_NV_; KW Gypsy-79_NV-I; Gypsy-79_NV-LTR. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-154 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-154 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_8; Positions 2046933 2047086. XX SQ Sequence 154 BP; 44 A; 34 C; 28 G; 48 T; 0 other; tgttatgagt agtccttata tggtagtcac gccatcacgt gactaacaag caaccctgta 60 agcctgccat gtgatttgaa taaatcagtc tgaatgtgat cttgtcgtag cctgtagtcc 120 tgttactatt acagccataa ctcaaatcat taca 154 // ID Gypsy-75-I_NV repbase; DNA; NEM; 2861 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-75_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75-I_NV; KW Gypsy-75-LTR_NV; Gypsy-75_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2861 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2861 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-75_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 574-574 (2007). XX DR [2] (Consensus) XX SQ Sequence 2861 BP; 781 A; 707 C; 867 G; 506 T; 0 other; atcccaacat tggtcggtgg tagaccggcc atcaaggtca agttagctgg cgaggaggtg 60 gagtgtttga ttgacaccgg ctccatggta tccctggtaa cggagaactt ctacaagacg 120 aagctcaaga acgttagcgg aagagtgcaa ggcggcggaa agatgctgag tctccgtggc 180 gcgaacggtc ttgagatccc ttaccttggc tacctagagc tggacatcac ggttggagag 240 gtgacaatcc ccaagtgcgg agtgctggtc ctgaaagaca cagcagccat tgttagacag 300 cggaggaagc agccgggagt gctggggatg aacgtgctga ccaagatccc aaagtgggca 360 gaggagctgg gaggcagcat gtcatcaaaa gaagagcaaa aacagaagaa gcggaagtta 420 gtcaaggtcg ctagaagcaa ggctgtgtgg gtcccacctc actcggtgat ggacatcgct 480 gtcacaggca caccctgtgg ggcgaacgca ctggtggagc cactcggtac gaccctgcca 540 ggaaggcttc gtgtggcggc aacactggtg gacgcatcca gaccgaactt caccatccaa 600 gtcagcaacc cgacaggaag agtagttcga ctgaagaaga ggacgtgtct gggcagcatc 660 atgccagcgg aggcgacaac gagggagcag ttgacgttcg ccgtaggagt cagtgaggtg 720 gtggtgtcct gcagtgccgc cacagactgc ctaggggtgt cctcacagac ccccgccgga 780 gctgccacaa cgctggatga aagaaggtca cctgaacagt cattactaga cggcttccca 840 gggacagagg aggacagacg agaggcgcag aggatattca aggagtatgc cgatgtattc 900 tctagagagg gggaggagct tggatgtacg tcaaccatac agcaccggat ccacacagag 960 gatgacatta cagttaacca acgccacaga cggattccgc caaaccagtt cgaggaggtg 1020 aaggagcatc tgcaagtact cctggaccgc ggagtcatcc aaccaagcca gattgactac 1080 gcctccccga ttgtgctggt acggaagaag tctggaacgc tgcgcctgtg tgtcgactac 1140 cgccgcctca acgcgaagag ccgacgcgaa gcataccccc ttccacggat agacgagtcg 1200 ctggatgccc ttggaggggc gcgatacttc tcgacgatcg acttggcatc tgcatataat 1260 caggtggagg tccatccagc agacagacac aagacggcgt tcacaagtcc aatggggttg 1320 ttcgagtaca acagaatgcc tttttgcttg tgcaacgcgc cagccacctt ccaacgtctt 1380 atgacgaaca tcttccggag cgacatcctg aagaccctgc tggtgtccct agacgacatc 1440 atcgtctaaa gtggcaacgt ggcagaccac ctacagaggc taagattggt attccagaag 1500 ctgagggagc acggcctgaa gatagagccg gagaagtgcc attttttcca ggagcgggtg 1560 aactacttgg gacatgtggt gtcggcggag ggcgtgtcca ccgacccagc aaagacggaa 1620 gccgtgtccc aatggccgac cctaataacg cttagagagc tgaggtcatt cctggggttt 1680 gcatcctact atcgacggtt cgtcccaagc ttcgctagta aggcggcgcc tcccacaagc 1740 tggttgcaga gatgtcggct gagacgagag gaaagcgtag cgcaataaag agcgatcgct 1800 ggagtggaca gtgcgaggag gcattctatg acctgaagag agcgctgaca agtgcaccgg 1860 tgttggcgta ccctgactac acaagaccct ttgtggtaga gacggatgcg tcagacaagg 1920 ggcttggtgc ggtcctgtca cagatgcaag aggacggaaa gctgagggtc atagcatatg 1980 caagtcgtag tcttcgtggc ccagaaacca acatggagaa ctactcatca atgaagctgg 2040 agctcttagc actcaagtgg gctgtatgcg agaagttcag agaacacctg cttgggtcag 2100 aattcatcgt gttcactgac aacaaccccc ccacctacct acagtctaag agcaagctca 2160 aggctgtgga gcagagatgg gcagcagaac ttgcaagctt caacttcaag ataaagtaca 2220 gggcgggcaa gcacaacacc aacgccgatg ctctgagcag acgtagacat gcagaaggac 2280 cagcgcagaa tgatgaagac gagggaggaa gcgacaggac aacaagcacg ccggtggcag 2340 aggaccttgc tacgattgct gagatgactg tcattccagg ggaagtgcga ctgggaatgc 2400 tggacgatgc tatcagagtc gcagagctag gagtgctacc atccgcagat caggagtctg 2460 gaatggcaac atgcccaccc gcactagaca aggagcagat caagcagcta caggagaggg 2520 ataccaccct aacaaggtta agacattacc ttaaactgag gaggaaagcc agccaagccg 2580 agcggaagcg ggagtcgagg gagacggtgc agatgttaaa ctacccgtcc agcatagagg 2640 agaaggacgg tatcctgttc aggaaggtca agtcagatga tggtatagaa accaggctgc 2700 tggtggtccc taccgctctg aggccggagg tgatgaaggc agctcactgc gatctcggtc 2760 accaagggct cgaaagaaca gaacggatca tcagagtgca atccccaaag atatggaaac 2820 atgagcaagt tagaaaagtt gagattccta cacaaagttg c 2861 // ID DNA-9-20_NV repbase; DNA; NEM; 381 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-20_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW DNA-9-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-381 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-381 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-381 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-20_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP35 unclassified CC DNA transposon [1,2]. XX SQ Sequence 381 BP; 139 A; 71 C; 58 G; 113 T; 0 other; gacagagcaa aaaaatggca tgaaattttc caattctcaa tatataagct caagattccg 60 catacaagga gttcctctga ccaaaagctt aattccaaat tttaaagaaa tttagaagat 120 atgaaattta gatattagcg agcaaagttg gcttaatttc tgatcagagc ccgacttctc 180 cctaaaaacg aggagaattc atactttgaa catttgaaaa ttgcacttca agcctcatat 240 ctcgaagacg aatccattag aaaaaaaaca ctttttgata tgttggttta cataacataa 300 ggaacctcta tgcaaaaatt caagcttacc gaagttaacc agaccttatt ttgggaaaac 360 ttgccatttt tttgctctgt c 381 // ID Gypsy-32-LTR_NV repbase; DNA; NEM; 151 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-32_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32-I_NV; KW Gypsy-32-LTR_NV; Gypsy-32_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-151 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-151 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-32_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 496-496 (2007). XX DR [2] (Consensus) XX SQ Sequence 151 BP; 49 A; 34 C; 25 G; 43 T; 0 other; tgtaacgaga tgtcgtacgt gacgacacga acaatacgta acacaatccc caccccgtga 60 ttaacttgtg attatcaatt attgtacagc ctagagttat tatctgagaa taaagacaca 120 caataagtcc tagtcgcttc atcttgtttc a 151 // ID Polinton-N1_NV repbase; DNA; NEM; 14761 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Polinton-N1_NV non-autonomous DNA transposon DE - consensus. XX KW Polinton; DNA transposon; Transposable Element; Nonautonomous; KW Polinton-N1_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-14761 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-14761 RA Kapitonov V.V. and Jurka J.; RT "Polinton-N1_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 652-652 (2007). XX DR [2] (Consensus) XX SQ Sequence 14761 BP; 3149 A; 4411 C; 4104 G; 3060 T; 37 other; gggggggact rggkggtttg aataaacyag tggggggcsc tgaatcgccc ctccggsccc 60 cccarcccca tyttaggctt gggaggcgcg rmkcgcccct ccgrgccccc agccccryyy 120 cakgcwgrkg aggysmcgcg tagattrmta attaccatct acgtcgggac cacttcgcgt 180 agatggataa atctacgcaa aacctacgga gcgcggaacg accgtttttc ggccgtaaat 240 tcaaagccgc tggcgtggcg tttaaacctg agttttactc gaacacctcg ctcccgaact 300 cctcgcgaat ttctcgcagc ctctttttca tcttttcgcg tgtctccagg gagggccctt 360 tcctgctttt tttctcackc ggtgcgaggc cgtgtcgagc tctgatagcg gccttgagcg 420 cgtagtatct ctcttgttcc tgaagtatta gccgaaactc ttcgtctgag atatgcccgt 480 cctgcagagc cttagagacc agctcgctga tcgagttttt cttactctcc gctaaaacca 540 tcgtgtcttc gtgtttagcc accttgctcg taagacccct agagactacc cccgcgcccg 600 cgcccacgac accgaccagc ccagcgaccc ctgccagcgg accgccgatc agaaccccta 660 tcccactcaa agagacccca ccccggcgct ggaaagcgcc cctgcagcga tgcyggatgc 720 cacagacaca gcatgggtaa cggcaaaggc gcgcttatac ttcttccgca cctgtcgatg 780 atgcgttatc tcgttgtcta graccgcctg agtgtcacat attttctgga gtcggaagct 840 ttgcacgtcg ccgccgatgc ttgccggagc ggtaggcgtc rtgtgcgttt gcggggggca 900 gacgctggga agcgaggggt atatggcacc gctgctaacg tcgctgtttg ccatgcttgt 960 tatgtcggac ctaggttagc tctaatacga ggcgaacagg cttgccctta aagtccaccc 1020 gtctaccgcg gtcatccctg atccatattc ggatactcga gacaaactca gaggaagatg 1080 ctgcgacaca aacggggatg tcgggcccat agacgacttt ctcgtgcggc ctcccgcggg 1140 tttctaggca agcgagaacg tttgaaggct cgtctaaggc gaggcattgc gtgcggtcta 1200 cgatatcgca gaagatgtag agggcctcta ttttcggcaa agycacctta agtgsgcccc 1260 ccccccacgg gcagtgcgag gccccgcccc cccccaactg atcgtcttta gcctctaggc 1320 caaatagtgc gcaaagctcg gcattcagga acgcaacgcc tttggacatg agcgcgatct 1380 tcccggtgag gggatccagc ttcgcggtca gaatcttgct ttcagcgcgg ttgatcgttt 1440 ccacgatgga ctcggccgtg tggtgcccgg ctggcagagt agcgatgggc ggggggaggc 1500 tatggtcgtt atcgatgctc ccgctcgaga ttataccagc tgttaaagcg agcactgccg 1560 gagcgccacg aagcgtgggc gccttatcgg ctgctcgaag aagagcgtca gttcgccttc 1620 ggtgaacaca gcatgtagga ccaccattgt gttgaacata gctcgccttc gtgtttgata 1680 gggctgagca tggattggga aggctggcgg atgctgaacg aggaggcgat tccccgaagg 1740 gaggaggaag agacgaagaa ggcggcagtt gcggcgggag cctctatagc cgaacatatc 1800 aaacacgcta tagccgaaca agtcaaacgc gcaaaacccg gtttccctag gtctctgacc 1860 ctcgcgcaaa agctgctcta cgccgtgccc gcgacccccg tggagagcac ggcctcagac 1920 atcaccccac tactcacgca gctagagata cacgtggctg aggacaaatc attcacgact 1980 agggtccgag acatattcaa agagacagta gtcacgcaca agtccgccaa ggagtctcgc 2040 cggtggctat cggagccttc ctatgggtac tggccacagc aactcaactt tgcggtctgg 2100 tgcgcaaccg ccggatgtgg ggtgtcccta aycgaccccg ctttcgccac gctcccctct 2160 gtcatcaggg gatttctaag gtttcacgtc tactttacca cccggaggat actctacgag 2220 ctcggcgccc ccctgcctgg cgacagcccg ttcacgcaaa aaggtaaccc ctacaagaag 2280 gccgctttcg agcgtctatg tatagagttc ggtttgccgc gtaagccgga cttccgatgg 2340 aaaggcgggc ggaaccacgg gctaggcgat gtgtttgtgt tctacccggg ggaggggtat 2400 cgcaacgtgc acgtgatccg tggctacgac acggcggcgg acgagtaccc gagccacctc 2460 aatctgttta gcgacgaagg tgggacgtac aatagtggga agcaggtggg ttacatacgc 2520 aacgacgacc acgggggcgt gcaatatagc tggtttgcgc ctcccaaagg tgaggggctg 2580 acaaaagcag ggctaggaag actcgatcgc tcggtcgagg cgttcgtcta cacagtgctt 2640 ggcgcgcagg taaacgtccg ttcctctatc gcgggggccg gtgggccggc catggaggcg 2700 caggcggagt tcacgaagct gcttgaagac gcgatcatag aaaacgacat cgctcaaagc 2760 gtgcaaaggt accagttagc cgtgcaggag gccaaggtga gactgagtct tgcggtcgca 2820 ccaggagtgt ggctgatgcc gagcgatctg gtgataaaca cgcaaagcgt cgtgggctac 2880 aacaataagc tgcagaaagc cacagactcc atgacgctcg gcgcaaacgc gatcaacacc 2940 gagacaaagc cagtcggtgc tcataacatg gccggtgggc atcctagggt gcaacacgtg 3000 actgaccctg ggatcgaccg cgtgccgtcc cggcggcgaa gcaaggmttc cgcccctgcg 3060 aaagtgcacg cagagggcgc ggcgcctgcc ccctctccac gtatgcatgc tgcgcatagc 3120 atgactgccg ccggagcggt aagcgcaccc gggtgggcga aaaaggtgac cacaccgccc 3180 tcaaggcggg gttgtcggca ctcgcggtgg ccgcggcgta ttacttgttc cgatgattgc 3240 ttagcattcg acgaaccaag aacgcggcta cggctagaat gagcagccac gcattttcgc 3300 caaggaattt caccgcttcc cctgcagcct taaacacgaa gttcgcgatg ctgcctacta 3360 gcccagggag aagctcgcct agctttttcc cgatggcctt aagcccgtta ccgacccctc 3420 tggccacgga ggagagcgac ttgccgagcg acgtcacaat ggccgcgatc gtcgtcgcta 3480 cggccaaccc gatagcggtg acggtaaagc cgtacttttt gaagatggct ttgatgcgct 3540 ctcttagcgg cttttggttc tcgagctctc ggttttcgcg ttctagttcg tcaatctcgg 3600 acagcctctc ctcgttgcgc tcacgggcct cttggcggcg actctctgac gtgttagggt 3660 cgtcgatggt ctccctgtct gtggctacca ccccttgcag ctcttggact cgttctgtgt 3720 tctcctggat gaccgcgtct atctctgcca cggaccccat cgccagcttg aagcctttca 3780 gctttgcaac gtcctgtcga acgcccccgt cctcattgaa cagctgtctt ggtttagacc 3840 aacctccttt gtcgaggttg cgaagctgta ttagcgtctt tcccctccgg tctgactgga 3900 accgtatcag attctcgtta aggtctgggt attcctccct gagggactgg agaccgagtc 3960 ttgtcgctgc accctctgtg atgaacgagg tttcagcggt cgtttgcgtt gcgcttcgcg 4020 tagccatgct atgcgcagca tgcatacgcg atgacgtgct cgtcattggg atcgactccc 4080 catcgtcggg gtcaaacggg ataaggggcg tcgtctcgtc gtcccccgct ccgcgatcgg 4140 cggacgcacc cggcaaggta tcgtcaatgt caacgtcaac atcacccatg atgcgtgcgc 4200 ataactcgtg ctatgcyata ttagacatgt ctaacagtcc gcaccatagc cacgcggctt 4260 cgtactttat gtatacatat atacgtatac gatgtcagtc agcgataaac ttgaccccca 4320 acgaacaccc agaactcctc tggggttgaa agccgagaga actgttcacc gggtcactct 4380 caacccgtcg acggcctccc caggcgagac gctatatgtg gcggtcccaa agctatcgga 4440 aggcgtcacg ctcgtgcctg gctccttgag ggtcggtctc gatctctcca tctcaggcca 4500 tgcaaataat accgtcgtga acaacgtcgg ccgaaatctc gtgagccgcc tgaaaatcac 4560 gtttgcagga gaaacgctcc aggacaccaa ccgctacgac gtcttcaaga cgtatgagga 4620 gctttacctg tccaaggtcg agagagagga ccgcctggag cagggcatac agtcagaaaa 4680 catgcgcaag cttcgctcca aggctggcga taaagcgact agtaacgcca aggagaacgc 4740 tctaaacgcc gcccacgggg cgaggtacac catcccgcta gaccattctc tgctgacgga 4800 ccacggcgta ctgtacccaa gggcgctctc cgaggcgctg ctcttcgaga tcacgttcgc 4860 aacggttgac caggtagtag tcggaagcga tgctaccaaa ttatcctatg gcatcaaaaa 4920 tctagagctg gaatacgaaa gcctgaggga cgacaacctc gcccggtctg cagccgccgc 4980 ctaccaaaac ggcacaacgt tcttctacga gcaagtgaac ctccacaaga ccttcgtgat 5040 tagcaaaggg acggacagca taatcaacga gagtgtcaac ctgccgcgaa ggtctatgag 5100 tggtctgttg ctcctctttg tggagccata cacggcaggg gctcgcgact ctgagaagtt 5160 cgtgtacccc gacatcaaga gcgttcgcgt tacaatcgac ggcgtgccaa acagggtctt 5220 cagccagggg ctgcgcccca cggatttctg gagggaggcg aaaaggcggt tcgtccgccc 5280 ctccccgggg gggcacagcg gagcgcctgc cgccccggca atcggccccg agtcgttcta 5340 tggcgataac aagtttgctc tgtggatcga ccttcgaacg acggacgaca gtgctatcca 5400 tgggggtggt ctccgattgg tcaacacccg cgacggtgtg cacctcgaga taaaacgcac 5460 ggcgagcggc acgggtaccg taaactgtca cgtgtttgtg gtggccgacg cccaaatgaa 5520 ccttatgaac ggacagctag agtccataca atactgagca cagacagttt ctgcgcgaag 5580 cggtatggac ccgaaaaaca tcccatttaa cgctctcatc gtgggcccga cgtcatgcgg 5640 gaagacccaa ttcgtagtgg accggctgcg cggccctttc cggggcaagt ttgactacat 5700 cgtactcatg tgccctacct ttgtctacaa caaaacatac gacggcttcg gcgagggcga 5760 caatcgtctg tttgtcatcg cacctgaggc gggtcagatc gacatactgc tgaggtttgt 5820 ctccgctctc ttcgaaggca ctaatacgct aatcatactc gacgactgtg cggcctcgaa 5880 agacgtaaag aggcgctctg accagctcgt caacttggcg ttcagcgcgc gccacgtggg 5940 tattagcgtg tgggtgatca cgcagcagct caccagcatc acgaagccgt tccgtgagaa 6000 catcgcggcc ttggtggtct tctatacccc gagcaaggcg gacatgaaag ctatcctgca 6060 tgactacggc gcggagctct cagaagagaa gatgaaagag tacatgaagg ccctcaagac 6120 gaaaaagttc tcgaagttag agttttgctt gcgtcaccct tataccatcg ccctagttga 6180 acggtaacca ccgccctggg kcataacgcg tacgtacgta cataatcaca cgtgttgcac 6240 cttagccacg gcatgatgag cgacgaatac tttgagagtc ttcttgaggg gggcgccgcc 6300 ggcctcccgg ccgtcgagtc gttggactgc tcgacgcagc ctgccggaac ggcaaccgga 6360 ggtgagcaaa ctgagatagc agacgcgagg gagaaactcg cgattctcgt agcctcgggg 6420 aagtcgagag aaatggtagg caaggccctg actcacgacg acgtcaaacg catgagcgcc 6480 gaggaggtga ggaagtacga gaagcgatac gagaccgctc tagccagccg gactacagac 6540 gccctggcag acagctttct gaagcttacg accaagctag taggcatggc gctgccgata 6600 gacagtgtgg tcgatcttca caatgaccta gtgtccgact acatcatcaa caacgagctc 6660 cgcacattgt gcggaagcct gtctctacgc tgcggtcgtt tgatggcttt agccgtcggg 6720 gcgttacacg tagcacgtca tgtgaacacc gccggaacgg caagcgctga cacgcggtgt 6780 caacacgagt tagcagtcgc ggactcacca gtggtttgcc cgccgaacgg cacgcacagt 6840 ggcgagtctg ccatcccaga gcagacgttc atttgaaagc ttgccacttc ttcagcaacc 6900 aagtagttga gaccgcgtgt caacacaaat ggaagaacct caaggaagta ctagtgccca 6960 gcatctcgcg gaacctgaca aacaagctgc ggaacagcct gctcatgaac ctgcacgtac 7020 gccttcggcg ttggcggaga gaatcacgag ccccgaacca cccgcgaccc gacctaaaca 7080 ccctgggcga gtcgaagctg gaaggcgctt ggcagagtgg aaccgactta acagagcgaa 7140 gaaagagaca cttcgtgtcg cgtgcaacag tgtcgttgag tcgccggtcg ctagcgagcc 7200 gcagggacgc gagggcttgc gcgcgcgccg aaggcataca cacaccagtc ccggaaagca 7260 actctgcttg gtcggctagc tcggttatcg gggtcgctgg tcttctagtg tcattgatcg 7320 gcctctacac acgtaggcgg gagctagctg ccgcgttcac tcgtacacca gctgttaacc 7380 agcgagctac cgactccgct tgtagcggcc gacgacgtga ctccgcccgc aaggccgccg 7440 ctggcggccg cacagcagac caaggatcga ccgcttgccg ttccggcgac agcgcttcgc 7500 gctcccggac aatgcaaatc tcggctgtta gccatggagt aagcagacat ttagacacga 7560 gggccccacc catatccgca cgtccgtgca ccgcaatgtc gacgacgcag cagagcaaga 7620 ttacaaagac catcaccgac gccgcagtca taaccggcct cgtcgccggt atcggctggg 7680 ttgggcgcaa ggtcttgcgc gaggacttca ccaaagaccc ctccgcgaac gccatgaact 7740 acgcaaaaat gactgccgcc gttgcaggtg ctgtcgcttt gaagggttac cttgaggacc 7800 agaagatcct gcccatgtag tagtgtactg tattagactc gcatgcgcak gcgaagacrt 7860 acacacagca cgtgaagtgt gcgcgcgtga agtgtgcgta cgtgaagcgt acatcacaca 7920 aacatggcct ccatcgcgat tttggttggc ggcgccgtcc taaacgcgac tgcattcgtt 7980 ggtggcaact acctcgcaaa gttcctgtcg aacgatgaga gccctgcctt agctgagaag 8040 gagaggcacg acaaggccct agagaaatac caacaagact atggacgcta ccaacagcgg 8100 cgacaaaaaa tcctcgattg gcaagctcaa agtcgcgaga gagggtccct cgcaaagcag 8160 aacttcaccg acaccgacta cgcgctcaaa ctctacaacc agacccggcc aaaacaatcc 8220 ctggagtcga tgcgggcccc kgagctgtcc gactactaca tccccagcaa aacgcagaaa 8280 aacgccgagt tggcgtacat tggcgccggc gctctcgcca tcggctacgc agctagccgc 8340 ttgctgtgat gcagctgccg ttccagcgct gcgtctaggc ggcctttttc catgctgcgc 8400 gtatacgtat acgtataaga tgattgcaga ccgagttcgc gcagcagtgc gtatgcacac 8460 ccgagcagac ggcaaacgcc tgttggagac tgatacacct gttgcaatgc atcgcgatac 8520 acacgtaatg gcccgccgga acggcaagcg catgtccgac gaagaactcg atgcgttcct 8580 tcgtcctata tactacgcca gaggtggctt ccagggagtg accgctctgc atgccaaact 8640 tcccaagggc tcagcctcca tagatcgagt gcgcaagtgg gtaagctcgc agcccgtcgg 8700 gggctacaca cagacacccc ctcctccgac tacctacgcc cacttctcgg agcagatacc 8760 aaaccgtatc caccagtcgg acctgctatt cttgccaacc gaccgcgggt acaagtatgc 8820 cctgactgtc gttgacgttg cttcacgata taaagccgcc cgcccactga ggactaagag 8880 cgcggccgtc gtctcccgcg aactcgctga catctatgca gagggacctc tcacatggcc 8940 taaagtcctc atggttgatg acggcacgga gttcaagggt gctaccacaa agctcctaac 9000 agaccacggg gtggaggtcc gacgggctga gccagggcac cacaggagcc aagctttcgc 9060 cgagtctttc catcgctggc tggcacagcg cctatttctt acgcagtact cgaaggagct 9120 tgcatccggc gagacaaacc gcgagtgggt tactgctttg ccaatcgtca tctcggacat 9180 gaacgcaacg aagactcgca tgactggctt tgcgcctaaa gacgccataa agctgaggcg 9240 cgtgcctctc aaagccgaaa agcccccctt agaggtcccc ttagaggtcg gaacggaggt 9300 gtacatcgcc gtaaacgagg aagaccttca ggacaagggc cgacggcgag cgacggaccc 9360 gtggtggaca agcaaggcat acccaatact aaagagggtc atggagcccg gacagccagt 9420 gttgtattac acggcgtact ctaagcacgg cttcacgcgt tcgcagttgc gtagcgtgac 9480 gctagcgtga caaaacagat caaacaaatc tgctgatcgc gctagcgtca ccctagcgtg 9540 atcagcgctt gtgccttcta ttgcagctaa ggcacgtgag tctgacattc cacttgtagt 9600 gaccctgact gtcgtccagc cggtcgatac tgaagcattg gggatgactc ttggtgtacc 9660 cctgaagcag aagctgagtg ccacagaccg tgcacttctt ttccgcgtca gcaatcatgc 9720 cgagtacgtg gtctaccgtc agaacgtggt gcggtcccgt gtactttgtg cgaccctttt 9780 gcctgtcgtc tatagcgtat cgcttgattc gcgctataat gagctcttca ctgggcgtag 9840 cctgcagtcc tgtgggaacc aaggcaccgg gggtgttatc gggggggatc acgcggacta 9900 tctggtcggc gagccgcacg cgggagatgc cggtgtatac agcattcgtg atccagccct 9960 ctaagctgtg gtctatgata aacaaacgtc ttggagtctg gatagtcttg ccctgcaccc 10020 ggtggactgt cccccagccc gcgtatttcc actcgagggg aagcccgtta aggaccgcgt 10080 cgagaggaac ctcgactacc gtgcctttgt acgcgtcgac cttctcaccc cttttgcctg 10140 gcacgggcac cggccgccct tgcttgcgat aacgatgcgc gacgctggga tcggggtcaa 10200 agcggatggt tgctggcaat cgggggtagt ttttcctgtg gtgctctacc aatcgctgct 10260 gaacaagggc ccccatcttg ttggtcgagc acacccacat atcgcttggg tgggcctgct 10320 cgatcgccgc gtcgaacgcc accccatccc actcctctcg aaacacctca agctgttggg 10380 aatctggctg acaccaaatc cggcccttta tgtcgtggag cctggaggag ggcgcggcag 10440 agccgcagtc gcatgtactg tacggctttc cgcagtcttc acacaggcag cggtagtcgg 10500 actcgaacca gcggatgttc ccttgtgccc actccttgag catatcgtga ggcccctctt 10560 tatctcccca gggcgggacc tgcccatagt cgccacaaca cactacctga cacggccgcg 10620 tggcgagata ccctaggatg gcgcgtagca ctttagtctg taccttacag cactcgtcaa 10680 tgatgattac ttctgcgaga cggtcgagtt tgtgccccag ctcggaaggt ctccactcct 10740 ctatcggctt ctccgctggt atgcagaggt agtggtggta ggtttgagcc ttcaccgcgc 10800 acgcgaggcg cgggttgttg cgatggtcgt gggcgaggtc gttctcgggg gtgagcacca 10860 caacgttgcg gccgcggaac atgctcaccg cccactcggt cttccccgat cctccttggc 10920 cggctagata catctttgca gaggttgcgg ccactagatc gcacggcaga ctcggcgcag 10980 tgcttggctc cctagccaag ctccccgact tcttcggacc ccaagccgct tcgggtcgcc 11040 actcgtaccc aggcttcttg tggcgccact ctccatacct cggatttcgc tccacgagct 11100 ttacaccact gggcaccgcc tttgcgtata tggcatctgt gcacactcgg aggacgtctt 11160 cgcgagggat ccgcctcaac atgcgtcgca acgctatgtt tgtgtacgcc aagacgaagg 11220 ccctgatatg gtaccattgt gagcgccgga caccgtcttt gtattggatc agatgagccc 11280 cgtcggcatg ctcgaagtta agtaagtggt cggtgcccgc aaggaggttt gtcagatacg 11340 cggcttcttc acggtcgcgg actacgatcg aggactcgtc gccgtggcga gcgcacttgc 11400 ctacgaaacg gacagcgaga tctcgaccct cagggtactg cgagtcttcg ccgccggggc 11460 ggcacgcgat ggagtggggg aacttgatgg agtccttttt tccgacgcta tacaacacct 11520 ccctcgccgt ggccatgacg aggtcacccg agtctaacag gtccttgagc tctggcgtgg 11580 tgatccagcc ctcgttttgc tccaagtgct gccccaccct cccggaagtg taggggtggc 11640 aggcctcaga gaactcccac tcggtcagct gaatggcccc ggttagttga agaacctcgc 11700 tcaatggccg tcccacaaca tccgcgatac gatacacgtt cgtagggaag ccgtatttcc 11760 gtaccaaatc aatggcgtcc gaggcgccgc cgaagacact gtcctcgcat cctaggtacg 11820 ccgcacgcat gtcgatgtgc gcatgaggct gcgcccctaa gttttccttg ctattccaca 11880 ctttggactc aacctgcgcc gctcgccaga cgtccctgta tttaagaggc gttggcctga 11940 tgttctctct ttgggtccac ttcttgaagc gataccctat tgcaccgccc atcgagtgcg 12000 tagcttcggt gtactcttgg taggctgggt gatcatcagg gagccattga ggatcatatc 12060 cagtctcgtc tgtaaacgcc ctgtcgatag cccatccgtc ctgtcccgat cggtacagtt 12120 tgccttcgtg cgtgactata acacgcccac acagccagat cctcgtgctt ctggggatcg 12180 ccctgtttat aaagcgaatg agcacctctc gcacttttgc ctcgcgcgtt tttgtggcgg 12240 cactggtagc gcgaggcgcc gccttctcct gacataacga acgaagctcc ccctcagcct 12300 cgaagtctag gccgtggacg ctcgcgatcg caggtggttc agtcggaagc tccgcccagg 12360 cgtggttatt gtggcaaggg atgcggattt gtgtgtaccc cctctcgtac ttccccgagt 12420 cccacataac gttgcccagg gcgtccacgg ctaccagctt tatctcgagc ttcttttcca 12480 tctcaaagag gtcttctttg gtgcatcccg tagtggccag cttcttgtca tatcgctcga 12540 ggatcttgcc tcgtgtcttg gttagaccaa gggagcgcga ggtgccgcga ttcctcaaga 12600 agtcggcaac atagctcaca acacagttag cgaaggcgtc actcccctct cgctcaaaca 12660 ttggcccagg ctccccattt tgctcaggta aagggcgaag ctcgtatctc acgtagacga 12720 ggtactctcg tcctttctcc caaatacccg catcgatgcc ttccagggcg ccgactgcga 12780 tttggtcccc tcttttgact aacgacccac caatcttgtg ctccgagcgc ccttcctcct 12840 ccgtgattgg cgccaatggc tctgcggggg ccttaccaac gaccgtgaag agtccgtaac 12900 gccggtcggg gtctaccatc tcgagcacca gcggcagcac tgcgtttgcc ctcagagact 12960 ctcgctcgtg cgagacccac cacaccgagc cgtcgtcatt aatatcaggc ccccgcataa 13020 ccggctttag agcaatgaca cctgctccac caagatctcg tatctcctgg taaacaccgg 13080 cgcttatgtc ttggccccga agagtggcat ccacgcttgg gaaccgaaga tgggcgccgc 13140 cgacgaagag agaatagtac ttctcggggt ctaagctctc tgggccctct tgccgccgtc 13200 ccggcagcaa agggtcgact tcctctgtcc acactttcgc cggtacgagc ggcttaagca 13260 gcttgtgttt gacatcgtcg gggatgtcct cgtccaggat gttctggacc agccctgcca 13320 gtacggcggg cgcctctttg tcaggcatgc tattgagaat ctcctctata taagcgtcca 13380 tgtttgggta taccctgtgc cacccagtct ccgactgccc gtatcacaac cggcgggacg 13440 agtgtttggg tatgacttgt gccacccagt ctctaattgc ccgtaccaca gccggcggga 13500 cgagtgtttg ggtatgcctt gtgccaccca gtctctagat gcctgtacca cagccggcgg 13560 gacgagtgtt tgggtatgcc ttgtgccacc cagtctctaa tcgcccgtac cgcgggccgc 13620 ggtgtcggac aggacgagcg tttgggtatg ccttgtgcca cccagtctca attgcccgta 13680 ccgcgggctg cgatgtcaga caggacgagt gcgaaccatt tccgagcgcg cctctcgacg 13740 ccgcgcatcc tctgcccttc acgattcgct ccgcaggggc ggcacaaccg cgtctccgac 13800 cgagtcccta tgccgcagat cctgcacggc acggggaggg ggctgccctt acggagcctt 13860 tggaggtgca ccttgcagta ggtgtccatg cacctccggc cgcacgtgtt tgcgtggccg 13920 acctttagcc acccgcaata atcctttccg cacttcatcc ttcgaacgct cggtatacca 13980 caggacagac ggatgtctaa ttgcaagtcc ttgggggttc gaactgcatc attggaaaaa 14040 catagccatg atacttcata acagctccat ttattagagt gcgagccaca aagcccttaa 14100 aaacgtatgt catgaagtac caagctcaat tatccaagat ggcggctcga ctcaaacaag 14160 gaattagacc taaagtgctt ggctggaaac tttcagtaac aaccgagggg aaagaggagg 14220 acgccttcgt agatggagtc ttaaagagtt cgaccgcctc tctgaaactg tatttcggaa 14280 acaggaggct tctgtggcaa acaaggactg ccataaaatc gtagacccgt ggccggtgat 14340 cgagcgttcg ataaaaagaa cacacgacgg tattcatcgc cctatcatcg ctgctttagc 14400 agagaaatcc cgagagaagt tcgaagccat gaaaacatgc acgaccaaac tgggggattg 14460 ggagcaattc aagcaccacg tgagtaaaac tcaggtttaa acgccacgcc agcggctttg 14520 aatttacggc cgaaaaacgg ctctttcacg ctccgtaggt tttgcgtaga tttatccatc 14580 tacgcgaagt ggtcccgacg tagatgataa ttattaatct acgcgtcacc tccccagcct 14640 ggagtggggc tgggaggccc ggaggggcga ttcgcgcctc ccacgcctaa aatggggctg 14700 ggaggcccgg aggggcgatt cgcgcccccc actagtttca ctcaaacccc ccagtccccc 14760 c 14761 // ID Harbinger-N29_NV repbase; DNA; NEM; 815 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Harbinger-N29_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TwA TSD; Harbinger-N29_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-815 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N29_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [1] (Consensus) XX CC Copies are ~90% identical to the consensus. XX SQ Sequence 815 BP; 249 A; 163 C; 180 G; 223 T; 0 other; gggactgtgc aataattatc aggagggggg ggctgtaaaa ccagaggggg ggcactaagt 60 taaaatgttg ccaagatagg gggggtcagc cttaactttt tcgcataaaa gggggggctt 120 actttaaatg acatcaaaat gttcgttttg tatccagatt tatcaaaatt tcgcgcttcg 180 cgcgcaaatg gttaaaaatg tcatcttttc ctttaaacac aaaatcgatg caaactttaa 240 gaacctcttt gcagtagtct cactaaggac cgctctgttc tataaatctc tatatatctc 300 tcaaccctta gcgacaaaat gagctcgttg tttgtcttga tgtcgcctga gctcaaactc 360 agaaagcgga ctcccgtaag cacccatatt ctagcggcca caccaagacg acaaaggtaa 420 gatttgtcaa gcattaaggg gaggtatctc ttagatgaaa aaaaaaacgc cgcgtacaac 480 aatctcaggt ctatgggcct gtgttaaacc atttataatt actcaatcca ttttatttat 540 tagacagaaa gaagaaaatt ccaactctgc tttggaccat ttccagaaaa agaaaattct 600 cagattctcc aatgaaacgc tttgggcttt tttttggtcc ttaattgtat ataggcaagg 660 ttatcctcat gccgaagtag aatgcattag gaaacaagtg actacaggta gaatgtagga 720 gggggggggg gggctcttcg taatttttaa agaacaggag gggtgtcaga gaccaacttg 780 acggaccccc ctcctgataa ttattgcaca gtccc 815 // ID Gypsy-41-I_NV repbase; DNA; NEM; 4728 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-41_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41-I_NV; KW Gypsy-41-LTR_NV; Gypsy-41_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4728 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4728 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-41_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 515-515 (2007). XX DR [2] (Consensus) XX SQ Sequence 4728 BP; 1512 A; 1284 C; 1045 G; 887 T; 0 other; tggtgtcaga agtgggatat gtcgaacccg aagagaccgg agctaaagct ggccggaaat 60 attagcgaaa atttcaaaaa cttcgagctc cgattcaacg attactgcat acaagcgaac 120 tatcgggacc tgggaaaaga ccccggaaca gaacgcctgg aacactacaa gagccccctt 180 ctagaaatat cggcattgcg atcctcccta cccgatgaag ctttgtccgt ccttagatac 240 actatcgagc cacaaatacc tgagggagag aagaaaaaac catggatttg gatggaaaaa 300 ctacgagccc actacacagg caccacaggg agctcgctgt tgaccgatcg attcaagttc 360 tggacgtcat gtcagcagaa acatgagtca atacaagaat gggaagtgaa ggtccgtcaa 420 gctagcagcc tttgtggcta tggagagctc aacgacgaac tatcccgaga caaattcatc 480 tttggtctca gtgaagaaca gatgcgaaca gagctgctga aaacacacat caaacctgac 540 acctcaaaga aaaccttgac ggatgtggtt tctgaagcaa aatcaataga atctgcaaag 600 aagacaagta agctcatcgc tgactcgtcg gcaaaaggaa tcgaagagga agtacattgg 660 acaggcctta gacacagcca aatgaaactg cgacgagaac caggaacctg cttttggtgt 720 ggcgaccgaa gaggacccca cccctggaag gaatgccccg ccaacggcaa gtcatgttct 780 aagtgtgctg gcaatgatca tttcgcccga gtctgtttag aagaacacaa tccccaagcg 840 tccggttcga accagcgaca acaacaagcg agaggaagac ctcaggcaag gggatataac 900 cagcgcagtc ggcggggcta tccacgtgcc cgcgcctcgc ctcgaccaag ggatgtccat 960 tacaccgata tatgtgaaga gcagcaatat ggttcagctc ccaaccccga ctatggcttc 1020 gatatgtacg cactggaagc acaagtacac aacatagata cagacagccc ctccaaaagc 1080 ccgggaaagc gctatttcac aactctacca ctttcaacga cagggtcgtc tttcaagccg 1140 gtcaagtttc agatcgacac agcagctacc tgcaacacga tgtcttacaa cacactgcag 1200 tcagtgctac cagacgcaga aatcaagcgg tccccatatc tcctgtaccc ctatggaaac 1260 tccaagccac tccaaccagt tggccaagta gaactggtat gcgacaagtc ggacaagtac 1320 gaaacactag tcttccaaat cttaccagac tcctgcattg gccttaagcc tgcactactc 1380 tctgggagcg acagtgaact cctcggacta atcaaggtgc aagcagagga gatccattcc 1440 ctctcctcgt cagtggtcca cactgccacc aagaccgaag atctcccagg gttccaaacg 1500 acacctccaa aagtggatga ggtcagtcag cacggcatac gtccacccca cgaaacgaaa 1560 acacccttgg aatgcaacca cctacaacaa gtacacgaaa tcaccacaaa cccgtgtcag 1620 cccactccct ctccttcagc gccgatcagg gttacaaaag acctccgcct ccaaccaccg 1680 ggcaatctga gaaaggaaga catacttact caatacgccg acagctttga aggactcgga 1740 ttcttgggtc cccctgtaca cttccagtta gacgaaagca tacagcctgt tcaaatgccg 1800 gttcacagaa taccagtagc caaacgagaa aaggagaaag aagccctgga ccggtatgtc 1860 aaggccggtg tcctcgccaa ggtgaccgac ccaacaagtt ggtgttcaaa cgagctaata 1920 cgagaaacac caaagaaatt cagagtgtgc atagacccaa gccaaacagt aaacaaggcc 1980 atcaatcgcc caatacacca gatgcccacc ttaaacgaac agcttcacaa gctaagttca 2040 gcgagatgtt tctcccttgt tgatgtcaaa gaagggtttc tacacattcc tctcgatgag 2100 gaatcgtcat ggctgacaac aatgcacaca tcatacggaa gataccgttg gcgccgccta 2160 ccatttggaa tcaagagcgc accagaggag tttcagatgc gactgttaac cgcactcgaa 2220 ggcctggaag gcatcatatg tatcgcagac gacatcctag tattcggaga gggaaaagat 2280 ttcgcagaag ctgagaaaga tcacgacaga cgattcgtcg ccctgatgga acgctgtaaa 2340 cagagaaata tcaagctcaa tgcacagaag cttcagttca agctgacaga gctcaaattt 2400 atgggaacca taatctcgga cgaaggaatg aaaccggatc cagacaagat aacagccata 2460 actgagatgc caacaccaaa taacaagcaa gcactacttc gattcatcgg aatggtgaac 2520 tatctcgcgc cgttctgccc aaacctgagc acagaaatac agccgctgcg catgctaacc 2580 caggacgccg ttactttcaa ctggtctgaa gcacaagata gagcgttcaa gaaagcaaaa 2640 caactgatct catcagctcc tgtcttagcc tactatgatc ttcacaagcc agtcgtgcta 2700 cagacggacg ccagtgacta tgctgtcggt ggagctctgc tccaacccaa tgacgagggt 2760 aaactccagc cggtggcttt cacttcctca agtatgagcc caacagaaca acgctactca 2820 caaatcgaga aggagtgttt ggctatctgt aacggtttcc agaaatttga ccagtggcta 2880 tacggcaagt cagatatcga agttcacacc gaccaccagc ccctcgaaac catcatgaag 2940 aaacctctca acaaggctcc tgcacgctta cagaagatga tcatgaagtt gcagcgctat 3000 caattcaagc ttacctacaa aagaggcccg accctctacc tggccgacac tctctctaga 3060 gcagcccttc ctcaacccat tgccgctaaa gtaacatctt tcgaagtatt ccgcacagag 3120 atggcggcca gagacaccga caagaaccca aggctaacag agaacactga gagccaaata 3180 agggaagaga caagcaaaga tactacattg gcagccttac aagacgtcat catacatgga 3240 tggccagaag acaaaacacg cctgcaacat tcgctccgcc cctactggtg ctacagggac 3300 gagctgtcag tacagaacgg cataatctac aaaggcatac aagtaatgat accccaatca 3360 atgtacaaaa ccatgctctc caagatacac gcaaatcact ttggcgcaga atccaacata 3420 cgcatggcac gtgaagtcct attctggcca gggatgagga aagcaattca ggacgcatgt 3480 gaatcctgtg gcacttgtgc ccaatatgga caatcagccc caaaggaacc catgcggtct 3540 ctacccatac ccactagacc atgggagata gtcagccagg atatatgtga aatagacaag 3600 cagaactatt tggtcacggt ctgtcacttc tctgactgga ttgaagtgga caaactggaa 3660 gacaccctgg ctcccacagt catcgagaaa actcaggcac attttgcgag atatggcatt 3720 ccggtgaact gccacactga caacggtccc cagtttataa gcaaggaata cagacagttc 3780 tcagctgact atggcttcaa gcacacaacg tcgtcgccat accacccaaa aggcaatgga 3840 agagctgagg ctgctgtcaa ggtcgcaaaa tcaatgctga aaaaggcaaa cgactttcaa 3900 aacgcgatgc tgatgtaccg aaacaccccg cctcaaggtc acacctactc gccagcgcaa 3960 cgcatgtttt tgagacgtac aagaaccaca ctacccacca cagaacaact cctggctcca 4020 tccatggtca actttgaaac cgtaaaacag gaaatagtca agaaaaggag tgaaacgaaa 4080 gcgtactatg acaagacagc aggaacacag caaagatctc ttgacatagg caactatgcc 4140 tacgccaaac cacgaccaaa ccaacgcggg caaccatggc gctatggtga agtcgtcgag 4200 aaagatgaaa cagcaaggtc gtacacaata cgaactccgc gcggaatcaa catcaggagg 4260 aacagagtcc agctaagacc cgcagcgcca ccaccaactg acgaccgact gcagatgatg 4320 gtgatgagat acccagcatc ggagccttat atcgccaatc caatccagcc cagttcagtc 4380 agcccacagg gatcacccac aatacaccgc agatacacaa aagccaggtt tcgtcacacc 4440 aggctgaaga gatcaataaa tcaaacccca tggatgggct cgcggtagaa atacctctgc 4500 ctcaagacac ccaaggacaa ccggaaacgc tcaacccggc aagacagaca agatctggga 4560 gggaagtcaa aactccacag agacttaaag attatcttct caagtagctg atgtttagaa 4620 ccactcttca gggaccatca taggaacact gtagaacgtt atggttaacc gttaaggcgt 4680 tgtttgtttt attttattat aatttaattt tcgttaaaaa gggggaga 4728 // ID DIRS-21_NV repbase; DNA; NEM; 336 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-21_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-336 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-336 RA Kapitonov V.V. and Jurka J.; RT "DIRS-21_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 416-416 (2007). XX DR [2] (Consensus) XX SQ Sequence 336 BP; 99 A; 86 C; 57 G; 94 T; 0 other; agttttcaag cagaaggcac tcctccagca gttaccagct tactgattgc agcaatttgt 60 agcttcacac gtaagacgta cgactcaagc tagagccact ggagcagccg atgtattaga 120 aggaaagttg atcctatttt ggcacctctg aagacaatcc ttattttcct aatgaaatca 180 ttcatcagag gactcgcata cagatctctt aatgttcttc gttcagcttt ctcatctact 240 cttcccaaaa tcgatgatca tccaatcggc caaaactcat acaatgttcg aatcatgcaa 300 ggtgtactga attctcgtcc accaactcca agatac 336 // ID hAT6-N5_NV repbase; DNA; NEM; 438 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A family of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW NVREP267; hAT6-N5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-438 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-438 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1198-1198 (2007). XX DR [2] (Consensus) XX CC It is a family of non-autonomous hAT DNA transposons that belong CC to the hAT6 group, characterized by 6-bp target site CC duplications. hAT6-N5_NV contains 15-bp TIRs and shares common CC termini with the non-autonomous hAT6-6_NV. XX SQ Sequence 438 BP; 141 A; 105 C; 77 G; 115 T; 0 other; cagggtggta aaggggggta tggatcacgt ttcacgaacc cgaaaaatgg ctttttcacg 60 tttcacggac cgaaaaatgg ccttttcaca tttcacgttt tcgaataccg taatatcgcg 120 tccaaaactc gcaaataccg taatatcacg tccaaaaatc gccaatacag tagtaccgcg 180 tccaaaatcc aaaaatactt gtatttactg catacgacaa tacatatcta tctattttgg 240 aaaggtcaca tgattctccg ttcaacacac tcaaaaactt gagctaaatc tcgattcacg 300 gagacttgaa acttctaaat cacgtttcac ggggagagtt aaatcacgtt tcacggacgt 360 cgaaatggac gatttcacgt ttctcgacag tgaaaaatgg ccaaatctcg tttcacgaaa 420 aaacccttta ccaccctg 438 // ID DNA-9-36_NV repbase; DNA; NEM; 48 BP. XX AC . XX DT 21-MAR-2011 (Rel. 16.03, Created) DT 21-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-36_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP257; KW DNA-9-36_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 16-48 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 16-48 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-48 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-36_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (21-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 48 BP; 6 A; 20 C; 12 G; 10 T; 0 other; tagcctgcgt agcggccctc cccttccctt gagccgctac gcaggcta 48 // ID Gypsy-9-I_NV repbase; DNA; NEM; 4021 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-9_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9-I_NV; KW Gypsy-9-LTR_NV; Gypsy-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4021 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4021 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-9_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 582-582 (2007). XX DR [2] (Consensus) XX SQ Sequence 4021 BP; 1274 A; 839 C; 943 G; 965 T; 0 other; tggtgtcaga agtctaaatt ggaaaagaag aatgcaggct acgactctga gacgtaaata 60 gagttaaaca aggagataaa ggccattcga atcgatctca aaacaacatg gcggagaggg 120 aatcgttcaa caagccaggt ccattaatac tggatgccca agctgcagaa aattggagaa 180 agtttatcat gcgatctacc tagcagcagc agaaaaggag aacaaatccg acaagatcaa 240 ggtaaacatg ttgcttaatt gcgctgggag tgaagcgatc gaggaataca gtcaatttac 300 atacggtacc gatgaaagtc cagaatcctt tgagaacgtc tgtaagaaat ttgaagaact 360 ttgtcgaggt gctagaaatg tgatatacga gagattggtg tttaatcaac gaagccagaa 420 agagggagaa cggattgata attttgtgag tgacttgaaa cgactagccc ttacatgtga 480 atttgggact ctaaaagatt cgctgattcg agaccgaatg gtcggcggag tgttgtctga 540 tcaactgaga ggtgaactgt tgaagaaacc agacttgaca ttacagtcag cacatgatta 600 ttgtcgtacc tacgaagcct cagaggcaca aaagatgaag ttcaatctac ccactggcat 660 tgttgagcaa tcagcatcta acattcatga catcaagagc tccatgtcgc aaaataacaa 720 agtgaggcaa gatgaccctt tatgcaaatt ttgaggtctc aggcattcat tttcgcaagg 780 taaatgtcca gcctttaagc aagagtgcag aaaatgtaaa aaggtcggtc acttcgcgag 840 ggtgtgtaga tctacaagga agagcagtgt gcatcaagtt gaaaaagccg ccagtaaata 900 caacgatgac gatgatgcaa ctcatgccta ctttgcttca gttgagctga ggtcagtgga 960 tgtatcagcg tcaaggagca aaagcatgat caatgtcacc ataagtaact gtcaagtcaa 1020 agttaaagcc gacactggtg ctgaggcaaa tgtcattccc tttaggcttt acagacaaat 1080 tacacgaaag ccactccaga aaatccacca gccattgaag ggatggttag ctactaagcc 1140 aatacaccca gttgggtgtg tacggctccc tactcaatac aagactcgta ctgttgacct 1200 gttataccta gttgtacgtg gtgattttac tccactggtg agctgcgatg catgccttga 1260 cttagaggtg ttgcaattta tgaacttaga tttgattcag cgttaaccaa cagccccaga 1320 tgctcaagat agcaagcata cccttctcga tatcattaca acagatccag tgctaaagaa 1380 cttttaaaat tgtttcagtg ataagcctgg tagactacct aatgaaatca atctggaaac 1440 tgatgagtct gtaacacctg ttattcatcc tccaagaaag ttaccaatat cactcctggg 1500 gcctgtaaaa gagaagttgt ctgagatgga acaagatgga atcatagtca aggaggagga 1560 acacacacca tgggtcggct caatgctagt ggtagacaag agacgagaga aggggaaagg 1620 acaactcact aaagaggaaa tcagaatctg cattgatcca cgggatctaa acactgcact 1680 gaagcgtgta caccacccta tggtaactat agaagaagtt gcagacaaac ttgctaacac 1740 tgttgttttt acagctctag acgcctgcag tgggttttgg cagctccaag ttgataaagc 1800 aagttcaaag ttgctcacat tcaacactcc ttggggaagg taccggttct gtaggcttcc 1860 cttcggagtt gctccagcgc cagagatata ccagcgagag atggaacggc tgtttgaagg 1920 tgtcccagtt gaaaccattg tggatgactt cctcatacat gcacaagacc agtcagaaat 1980 ggatgaaaaa ctgtcaatgg tactggagcg aagtcgagag gtaggactga agtttaatcc 2040 tagtaaagta aagcttagag tggataaggt aagttatgtc ggcttacttc acaaggcttg 2100 cagccagatc cagagaagat caaggctgtc attgacatgc caccaccaag agacaaagag 2160 ggggtgcaac gactaatagg aactgtgaac tatcttgata agtttatcca aaacaaagca 2220 gagattcagg gacccatctc ccagttgcta cagaaggatg ccatttttgt atgggacaca 2280 ccccaacaaa atgcgtttga acacctcaaa agtgttatca gtagttcacc tgttctgtca 2340 tatttcgaca ataacaaaca gacagttttg aatgctgatg ccagcagtac aggcttaggt 2400 gcagtggtaa tgcaggacgg aaggccagtt gcatatggat cacgaacact caccaatgca 2460 gagaaacatt acgcaaacat tgaaaggaaa ttacttgcca ttacctgggg ggtacagatg 2520 tttcatactt acttttatgg ccggtcagtc atcgtacaga cagatcacaa accgctcgag 2580 tcaattttca agaaaccact taatgatgcc ccacccagat tacagcgcat gctccttaag 2640 cttacaaagt atgatttgaa tgtcaactat gttcctggta agcaacaagt cctttctgac 2700 tgtttgagca gagcacccat acatatacca gagacaccta tcaatgacag tgatgaggtt 2760 caagtcaact tggttgacaa gttaggactt gacaacgatg ctctgtcaaa gtttgaagtt 2820 gtaccaatac tgatgagact tcgcaggtcg ttatgaatta tgttctcact ggttggcctt 2880 cagacagggg acagatggat agcaaggaat attttaacta cagggaggag ctaagtgttg 2940 aggatggctt actattcaag tctaatcgaa ttgtcgtacc acgagggatg agagctgaat 3000 tacttgatga gattcatggt gcgcacatgg gtgagtcaaa aagtctatcc tatgctaggg 3060 actatgtttt ctggccaggt atgagtgcac aggtgaaaga cagagtccga tcctgcggaa 3120 tctgtaatac cttcaggaat cagcagcaaa aagaaactct caggcctcac gacgttcctg 3180 ggctcgctat ggaatacccg accaagtgat cagtgataat tgatcacagt acagtaatac 3240 tagaaactta tttgatagca cccaccaatt caaagtgttt gcgaaagaat aggggcttca 3300 acatattacc agttcacctg aatatcatca gtcgaatggt gcggctgaga cagctgtgca 3360 gacggccaaa catatcctta agaaagcaga tgctgatgga aaggatccat tcgagggact 3420 tctcaagtac cgcaatacac cttttgagga cattggtgta tcacccgtcc aactgttgat 3480 gagccggagg acccgtaaca tgcttcccac tcacctcaac cagtgaaccc tgatacagtt 3540 gttaaagcac tcaaaacgcg tcaagaaaaa gctgcagcgt attacaacca gaacagcaaa 3600 gacctgccac cactggaatc tggttcgaaa gtcagaatcc gaacaggcgg cgaaaagcag 3660 tggaggacag cggaagtact accaaggtta tacatggtac aagacgacag gaacagaagg 3720 cacatcattt ctactccagc caatccggct gcagccaagc tcaccggtcc ttactggtgt 3780 gccagtgaag ccattgacac ctctacagat acctgtagtc tcggatcaac caaatccaca 3840 gatgcctgca gtctcggatg tgcctatgaa gcagccagtc actaccagat caggaagact 3900 tgtgcaaaag cctgataggc ttattgagtc gtgttaagaa cagttaacta ttataactga 3960 gccatagtct tgttactttt atttcaaagt gacattggga cttgttattt gaggggggag 4020 a 4021 // ID Penelope-6N1_NV repbase; DNA; NEM; 270 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Penelope-6N1_NV non-autonomous retrotransposon - a consensus DE sequence. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Nonautonomous; non-autonomous; Penelope-6_NV; Penelope-6N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-270 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-270 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-270 RA Kapitonov V.V. and Jurka J.; RT "Penelope retrotransposons in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC It is a non-autonomous family derived from the autonomous CC Penelope-6_NV. Copies are flanked by ~15-bp TSDs. Its 69-bp 5' CC terminus is likely similar to the 5' terminus pf Penelope-6_NV, CC which is not known yet. The remaining 200-bp portion of CC Penelope-6N1_NV is a palindrome. The palindrome arm is 99% CC identical to the 100-bp 3' terminus of Penelope-6_NV. XX SQ Sequence 270 BP; 76 A; 55 C; 65 G; 74 T; 0 other; tggtataact agaaagacta caggcaagct gtagaaaaac tagatggtct gcgtaggcgt 60 ggtgtagaca aggtataaat caacacaagg ttgaaaaggt atgttaaacg cctctgtgaa 120 acagagtagt tgcgctgacg tttcgagcgt tagcccttcg tcggatttct tttgctccga 180 cgaagggcta acgctcgaaa cgtcagcgca actactctgt ttcacagagg cgtttaacat 240 accttttcaa ccttgtgttg atttatacct 270 // ID LTR-1A_NV repbase; DNA; NEM; 1203 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-1A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1203 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1203 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1203 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1203 BP; 340 A; 219 C; 274 G; 369 T; 1 other; tgtacaggac ccgaaatgat cccaggaccc gaaacgatcc caggacccga aatgatcccc 60 aaaagtaccc caactgatcc cgggacccga aacgatcccc aagagtcccc gaaatgaacc 120 ccaaggaatt gcagtaatgg acaaacaaaa ggaatgtgga aggattggct ttcagtttta 180 aaaacatatg aaacatttta gcgtcatttt tgtcactatc cagaaatttg aattaactaa 240 aaccatagta ttaagatttt tatatacgac tgcgcgggaa atacagcttt cgacagcttg 300 gttgagtcag caattggggt caaataaaaa ttcccgtgat ggtaatttga agaaccaggc 360 gtgaataaat aattcataca taacaagcca taaacgaatg tctccaaaga ttagacatgc 420 ctctgctttc ccgtaggaaa atgtttgttt gtgttcggtg aatgaaagac ctatcataaa 480 gagagataga gagaaatcat gcagtggtgt acgcactact acataaggaa attcaaaact 540 cacatattgc tttcaacaaa agccacatct cttaatattt tgcaacggta gtaaaagggt 600 tgttcgagtg cattactcag tgtgcttttg tcattccatc ttctcggcca aaccggctgt 660 cggtaaatat tcgctcgtgt gaacatggat ttcgtggtga aaaacacgtt tggttgtcaa 720 atgaatatag atttttaggg gtgatgttta ccggaaacga gatttatagt gtcagagtca 780 tgtgttggaa ctgcaaatgt ttcgaaggtc aaaagtttgg ttgttctgag caaggctgtg 840 ctttggctgt gctatgttta tgttgtactc ctttcagtag caattaaaag ttgtgtattt 900 gttttggact ctgtttatgg gtttaccgcc ggggcaatgt aataaataga agtattgtat 960 tggaatttaa gttttttaag tcatgttatt tagaaataga ttggctgtca acccttaatt 1020 atgctttaag aattggaagt gctttcttct gctttccctt tgtccattac cgcawttccg 1080 tggggttgat ttcggggact cctcggtatc gtttcgggtc ccgggatcag ttggggtact 1140 tttggggatc atttcgggtc ctgggatcgt ttcgggtcct gggatcattt cgggtcctgt 1200 aca 1203 // ID RTEX-8_NV repbase; DNA; NEM; 1061 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE RTEX-8_NV non-LTR retrotransposon - incomplete consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; NVREP345; KW RTEX-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 402-1061 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 402-1061 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1061 RA Kapitonov V. and Jurka J.; RT "A family of RTEX-8_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX CC Only a 3'-terminal portion of the retrotransposon is shown here. XX SQ Sequence 1061 BP; 380 A; 207 C; 210 G; 263 T; 1 other; taaagcactt tttaaactca aaagagaaat gggcaacaac ttcagaacaa atgtcctgct 60 gaccaaccgc ctttttgact gcctcattaa gccaatcctt ctatatggca gcgaaatctg 120 gggcgtcgat gaaataaaaa acgaasgtga cccaatagag ctggtgcacg ccaaattttg 180 taagtttatc ctcgctgtcg gcaagtatgc tccaaatata gcctgtcggg cagaactagg 240 aagatatcct ctgtccatag acgcgaaatt aagggtattg agttttcata acaaacgatc 300 cgaagcccac agcaatttct tatcacatga tgcatatttg gactgcaccc ccggaaacta 360 cacttccaac tggtatgtta aaggcaaagc catggtgtct tcggtgggac tgggttatct 420 ctggggaaac tttcaagtaa ttgagaaaaa agcgcagcaa tatttgttta agcaaaggct 480 tcaagacatt gaattccaaa attttgaagc tgacattttt aacgattcaa aaaagcccgg 540 acaaaagaac aaacttagaa cttaccgtaa gtttaaaaca aaatatgaca aggaaacgta 600 cctatttaat gttcaaaaca tcaagcatag agaagagttg acacgcctaa gaataagttg 660 tcataagtta gaaatagagg ctggacggta ctccagacca taccgcagcc cggaggaaag 720 actctgccgg caatgcgacc tcaacgaaac agaagatgag tggcacttcc tactgaggtg 780 tcccatttat gataacctta ggaaagaaat gcttgatgtt ctggaaaaag acaaaattag 840 attccacaac aaggaacagc tttttcatct actcttaaac ccgccaaaaa aggtgcaaaa 900 ggctgttgca aagcacattt ttctgtgtat gtgtataagg aaaggaaata aggaaatata 960 ataaggaaag gaagtataga aatttattgg ttgaaacaac ctatgtaaca ttatgtaaag 1020 ttatatggta ccaataaaac atcatcatca tcatcatcat c 1061 // ID DNA-TA-15_NV repbase; DNA; NEM; 430 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-15_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-430 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-430 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-430 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-15_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 430 BP; 108 A; 103 C; 91 G; 128 T; 0 other; cactcgtttt cagtcacacg tgcaccctgt gcctttcgtt tacgagtcac aactgtgttt 60 tggtggacgt caatcatgac ttttgaattt ttccaattct gcatctgtca cagctttaga 120 tcgatcacaa ccaaaacaac atcaaagtgg atcgccttct tagctactgt caccgagaaa 180 ataccgataa acacaaagcc agcaattgaa taaagttcga attgtttctt agctttgcgt 240 tgttgttgat ttagtgcgta tgtgcgtatg tatctcttgt ctgctttctt gacgcctggt 300 gcttttcggc gctctctcat tggttagcgg tctaacggcc gccgtaactg cgaaatggct 360 tccgtcacca aaaaccagtc gcgactcgga aacgaaaaac acaaggtgca cgtgtgactg 420 aaaacgagtg 430 // ID Gypsy-20-I_NV repbase; DNA; NEM; 4234 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-20_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20-I_NV; KW Gypsy-20-LTR_NV; Gypsy-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4234 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4234 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-20_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 471-471 (2007). XX DR [2] (Consensus) XX SQ Sequence 4234 BP; 1308 A; 931 C; 988 G; 1007 T; 0 other; ttctggcgac gaggatggga tcaacaactg gataaacaca tactgaagtt aaatctgtca 60 aaaaaaagcc ggtatggccg tctgtttatc aggattacca acgccaaaag ccttcgactg 120 cattggcgaa ccagccacgc tggaacaaag atggacaatc tggaagtccg aatttgagct 180 ctactgcact gcatctggca tcaaagactc gaaacaacaa cgagcaatac ttcttcacct 240 agcaggagct ggaatacgag aaatttttca cgcttttacg gctgaacaac agggggagga 300 ctataaaaca gccatggact ccctcactca acacttcaaa ctcaagaaaa acgtaccgat 360 ggccaggcaa gccttcttga cagcggtacc aaaacccggt gagaggattc atcaatttgc 420 aattagactg caaacccttt gcgaacactg cgagtacaac gaccaaaagg acagtcaaat 480 tcgagataga attttgacct tcatattgga taaacccctc aaagcaaaac tctttcgtga 540 ggaaggtctg actctcagca agctcctgga aattgtcaac acgtaccatg acaaagaagc 600 actagttctt gtgccagatc aaggtggtgt taaccaattg agagtacaac agaagcctga 660 cagtgctggt cccaagtttg atggcagatg tcatcgttgc aataagcagg gtcataaagc 720 tgctgactgc agatgtagca aaaatcacca atgtgaaaaa tgtgggaaaa ttggacattt 780 caaggtctgc tgcaaatcaa agcagacatc tggaaaagca aagtctgcaa gtggaccaaa 840 atcaaagggc aggaagccat ctcatgtaag acaagtggaa gctgttgatg ttcaagaaac 900 tgatagcgaa gaggaagaag atgtttttaa tgtattctgc acgcacacag agtcaccgcc 960 tggtactatg gagatatcta ttggaggtgt tatacagaat gtcatcattg attcgggtgc 1020 aagctgtaac cttatgtcag aaaggacatt caatgactta tcaaaaggag acattgtttt 1080 gaagccaagt agcaagcaaa tttttgcata ttcgtctagt gatgctttaa atcttaaggg 1140 tagttgtatg cttaatgtgc atgtaccaga aacaaatgtg gataagcgcg caaagttttt 1200 cattgtctct ggaaaagcgt caactttgtt aggtcgtgaa ttatctgaag ctctaggcat 1260 actcaaagta ggagttcagg ttaatagttg tagctcagat ttctcagcta taaatactca 1320 gttaaacagc aaagcagcgc ttaaggccaa atttcctaat gtttttcatg gtttgggcaa 1380 gcttaaaggt tttaaactca agttacatat tgatcagaat attaagccag tagcacaacc 1440 attgcgtagg attcctttta gtcgcaggca gaaggtcgct gacaagttgg aggaacttga 1500 gaagcttggt gtggtggaaa aggtaaacag tcctacaagt tggatcaatc cccttgtggc 1560 agtcgaaaag ccaaatggag atgttcgcat ttgtttggac atgcgccagg ccaatcaggc 1620 tatcttaaga gaaagacacc cagtacctac tatgcaagaa accctacaag aaatctcaga 1680 tgcaaagatt ttcaccaaat tggatttaaa catggctttc catcaaatcg agttatcccc 1740 agagtcccga gacataacta ctttcgcagc gccaacaggt ttatatcgct actgtcgatt 1800 gctcttcggt gtgaacatgg ctaccgagaa gttccagaac ctgatatggc aagttttgaa 1860 agactgccct ggagccttca acatgcatga cgacattctt atagtgggta ggaaccaaaa 1920 ggagcatgac gagaacctgg aaagagctgt ccaaaagctg caagacagcg ggctcaccct 1980 caactatgag aaatgtgtgg taggagcctc gagtatggat ttcatgggag acaccatttc 2040 tgcagatggt cttaagttat ctgacaaaag agtcgaagca attgtcgagg cacctgcacc 2100 aaccaaccaa tcagaggtga gaagtttcct tggttctgct caattttgtg ccaaattcat 2160 tccacagttt gcaaccattt ctgctcccct gtgggatctt accagtaaaa atgctaaatg 2220 gaaatggggt gccaaagagg cagaatcatt tgcacaaatt aagcacttgc taacatgtgc 2280 accagtcatg tcttatttta cacagggagc ccagaccagg attatcactg acgcctcacc 2340 agttggcctg ggggccatac tagagcaaag acaacctggt gatggtcaat ttcgaccagt 2400 gtactacgca agtcgtaagc ttagtaaggt tgaacagcgc tactcacagt tcgagcgaga 2460 ggcccttgct gtcaaatggg cctgtgagaa atttcacatg ttcctttatg gaacccattt 2520 tgaaatacta actgatcaca aacccttaat ttcagtccta ggtccaaagt ctaaaccccc 2580 gtctgctagg attgaacgct ggctgttgta ccttcagcaa ttcagctatg tggtcaggca 2640 catttccgga aaggaaaatt cagccgacgc cctgagtcgt ttaccagttg gtccagtaca 2700 gacagctgat tctaaagcaa ccagcgagta tgtgtttagc actgcaaagg ccgcagtacc 2760 tgtcgccatg accccaaagc atgtagaggt tgtttcagag aaggacccaa cccttattct 2820 ggtacgcgaa gcaattagaa gtggagactt cacccgcctc acaggtacct tgtacaaagc 2880 agtgtcaaag gagttgtgga ttgccggaca attagtgatg cgtggaaacc gaattgtgct 2940 accagaatcc ctatggaagc aagcaattat tttagctcat gagggacacc aaggaatggt 3000 gcgcacaaaa tcccgcctgc gaagcaaact atggtggccg cagatggatg cacaggctga 3060 acagttcatc aaggcctgct acccctgcca gctagttgga ccacgtggca aaccggaacc 3120 tgttcgatca acagaactac ctgaagaacc atgggaggac ctcgccacag atttgactga 3180 gatacctgga ggaaaccact tgctggtagt tgtggataac tactccagat ggccagaggt 3240 agtactcctt aagaaaaccg atgcgccaca cgtcatcacg gcattggagg gaatattcag 3300 aacacatggc ataccataca cggttcgcag cgacaacgga ccgccctttg cctcgaaaga 3360 atttgagaat ttcttagagt tcttaggcat agaacataag aaaggaattc catattggcc 3420 acagagcaac ggcgaagtgg aacgatgtaa cagaacaatt cttaaagtga ttcggatagc 3480 aaacttgcaa ggaaatgatt ggaagaaagc gcttgatgat ttcctttttc agtatcgcac 3540 aacaaaccat gccgcaactg gatgctcgcc agccgaactc ctaatgggaa ggcagctccg 3600 agacaagcta cctagtgtaa agattccgaa ggatagagcg acagagtcag agtggcaaca 3660 caaacttagg gacagagacg ctctatcaaa actcagacag aaagagtatg ctgatgctag 3720 aagacatgct gagccaagtg gaattgatga aggcgatgaa gtactgctgc gacagactcg 3780 ccgcgagaac aaactctctc cagtttttga gcctgaagct tacaaggttt tgcagaagac 3840 aggtaatgca gttgtactgg aggattctga tggaaatagg aagatgagga atgtagcaca 3900 aatgaagaag ttcatcaaac cacaggaagc agtcgccgca gacatgctgc ctactccacc 3960 tgaaatcgcg caggaacacc aaaccgcacc tgagacccag aaccagtcca cacttgattg 4020 tacagctgaa atgccagcgt ctcctggttc tctagccaat cagcgacctg cgcgcactag 4080 gcaacaacct gttcgcttta aggattatgt gctacaataa gttttgttag ttttattttt 4140 cttttcagtt ttacatacat gcgtaggacc cctactatag ctgttatagt tatttagctc 4200 ctagtatgga ctttaatgct aagtaagggg ggga 4234 // ID Gypsy-51-LTR_NV repbase; DNA; NEM; 108 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-51_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51-I_NV; KW Gypsy-51-LTR_NV; Gypsy-51_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-108 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-108 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-51_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 538-538 (2007). XX DR [2] (Consensus) XX SQ Sequence 108 BP; 30 A; 19 C; 22 G; 37 T; 0 other; tgtacattag cataaaatag acacgtgcct cgagcctcaa tttcatgtta gagggtggcc 60 atgttggaat aaaaagcttt ttttgttaag tattactcgg cttcttca 108 // ID hAT-4_NV repbase; DNA; NEM; 4025 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-4_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; 8-bp TSDs; KW former NVREP520; hAT-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4025 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4025 RA Kapitonov V.V. and Jurka J.; RT "hAT-4_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 590-590 (2007). XX DR [2] (Consensus) XX CC The genome harbors just a few copies of hAT-4_NV and ~50 copies CC of its non-autonomous derivatives. The N-terminal part of the CC transposase is not finely predicted. XX FH Key Location/Qualifiers FT CDS 1275..3575 FT /product="hAT-4_NV_1p" FT /translation="ILLIAVWCTIHYQNTVFQDTDDVEDASAVDTSVPPTD FT VTEAVDERPPREIILSVEPFHPKQIKRSETDKEGKAKKRNCQLQYFHDFPW FT LHYIPDKDVVVCHVCTKAVKLNLLDGVRQEPAFTTKGFNTWRNATKMFRLH FT QNSKCHKQAVECVREIPAKCRDVSELLVEQTVKERENNRRYLSKIIQNLQF FT LARQGIAIQGAKETDSNFHQCLLLRAKDDPSILQWMSKKTDKYTSHDVQNE FT LLDIMSQQVIRDVANRIKTECYSLLADECTDVANKEQLTVCLRWIDENLNP FT NEDFIGFYHIPDISSDTIVSALKDALTRSDIPLKSCRGQCYDGAGNMSGVK FT NGAATKIQAEVPQAHLTHCHGHALSLAVHDMCKRSASKLLSETLDTTREIC FT KLIKFSPKRQGALEKIKGELDLDAPGIKVLCPTRWTVRGDSFLRIIQNYVA FT LANLWTDCLSARLDSETRARIIGVQCQMKEFDYFFGLNLGNMLFSITDNLS FT KTLQKTKMSAVQGQRLAELTITTLSNMRSEQNFSDFYALVLQRRNSLECEI FT SEPKLPRKRAPPKKLDDGSEPYHPPAAEDRYRTMYFSALDDIVMAITERFD FT QKGFKVYRIVEEFLLKAVRGVDFTSEMATIESEYGTTDVNVRNLTSQIPIF FT RQLMEHKDVTHFDDIYKEVQSLDKPTRSLIGEIVKLCVLLLVNPATDAIGE FT RSFSTMRRLKTWLRSTMGQKRFNSLAVLSVHRERTDKINLAAVANEFVRLN FT DNRRRLFGEFSVADFC" XX SQ Sequence 4025 BP; 1186 A; 909 C; 957 G; 973 T; 0 other; cagggaccgc ggaaccggta ttgccggtat tgcccgagca ataccagaaa tcggcgagag 60 gaaagacata catgaatgag aaatcactcc gccgtaaata agcatcgcaa tactagttca 120 atgaaaaatg cccatgaatg ctcttcccaa agccagatgt ccaacaccat ctctctaatc 180 acccggaaaa cggtgtagct cagcccggac gcagtatcgg ggctggatac tagttcaaaa 240 cgaaagcgaa agggggtgga tatttgtctg tttatacgaa gattcattga taaattctgc 300 gtgcaaaagt tttcaaagaa gaaaaagact agtgaaagtg gacaaaatga gtactggtga 360 gttgagtttc actgtagtgt acccgttcag taatgacatc gtatttttct ataaaattct 420 atcaaatttc ggtgcaattt ggacttgacg gtggaaataa attgtagtgg atttgatcgg 480 aaaaatccat tcccggaatg gattccggaa tccggaattc gacccattcg aggtttgatt 540 ggagatgcag ggggcctgac cgaatgtttt atttcagcgg atcagccgcg gaggtccatt 600 gaagatgacc aggagccagg caatgttgct gatgatgata caggtatgta catatgacat 660 agttacgtag atacatagtt gacatgatat tctttagtga gaaaactata aaattattta 720 ataataattc accgatgaag atgatgaaat tcaagatatg cgctgccgcg gcgaaattac 780 cgaaatcaat tctacagcag aaactccgtc agcctatcaa aagttcaatg gatttttgcg 840 ttttataata ggcatctgtt gcatatattg tctgagttcc gataaatcga ttacgaacaa 900 aacgggatcc gaacgagtcc cgttctatgc gattcatatg agattgatca aacgatgctg 960 aatgatttgc tcatgctgac taccatttca caggtgacaa aattgaccta gcgggtccgt 1020 ctttatccgc ctcaagcgct agcagttctg gacgacaagg gatgaaacgt atgcgtccta 1080 aggtcacact tcacgatttt ttcaaaagat ctaagactga gaatatcgaa aaggtaaaaa 1140 aatggaaatt tcggattcaa ttcagtttga tcagtccaaa agtatagaaa atcttcacac 1200 cacgtaacca tttcatcagt atacctatgt ctcgaatttt agcgggtgtc tcgtcgattg 1260 gccaaactag ttaaatctta ctgattgccg tatggtgtac tattcattat caaaacactg 1320 tttttcagga cactgatgat gtcgaagatg catcggcggt cgacacaagc gtcccgccta 1380 ctgatgtcac agaagccgtt gacgagagac cgccacgtga aatcattctg tccgtcgagc 1440 cattccaccc gaaacaaata aaacgttcag aaacggacaa ggaaggaaaa gcgaaaaaga 1500 gaaattgtca actccagtat tttcacgact ttccgtggct acattacata ccagacaagg 1560 acgtcgtcgt atgccatgtg tgcactaaag cagtaaaact gaacttattg gacggtgtga 1620 gacaggaacc tgccttcacg acgaaaggtt tcaatacatg gcggaacgcc accaaaatgt 1680 ttcgccttca tcagaactcg aaatgccaca aacaagccgt cgagtgtgtg cgagagatcc 1740 cggcaaagtg tcgcgacgta agcgagctgt tagttgaaca gactgtgaaa gagcgggaaa 1800 acaaccggcg atatctgagc aagattatcc agaatctgca gtttttagct cgtcagggga 1860 tcgcaatcca aggagcgaaa gagacggatt cgaatttcca tcaatgtttg ttgctcagag 1920 cgaaggatga tccttcaatc ctacaatgga tgagtaagaa aaccgacaag tacacgtcac 1980 atgacgtgca aaatgaattg ctggatatca tgtcacaaca agtaataagg gatgtcgcta 2040 atcgcatcaa aacggaatgc tattctttac tagccgacga atgcacggac gtagcgaata 2100 aggaacagct gacggtgtgc ctgcgttgga tcgacgagaa tttgaatccg aatgaggatt 2160 ttatcggctt ctatcatatc ccagacattt cgtcggatac gatcgtttcg gctctcaaag 2220 acgccctcac ccgatcggat ataccattga aatcatgtcg cgggcaatgt tacgacggag 2280 cgggtaatat gtccggtgtg aagaacggcg cggcgacgaa aatccaagct gaggtcccgc 2340 aggcgcatct aacgcactgc cacggacacg ccctctctct cgctgtacat gacatgtgta 2400 agcggtcagc ttcgaaattg ctgagcgaga cgttggacac gacacgtgag atatgcaagc 2460 tgataaaatt ctcaccgaag cgacaaggag cacttgaaaa gatcaaggga gaattggact 2520 tggatgcccc gggaatcaag gtcttatgcc cgaccagatg gacggtccgc ggggacagtt 2580 ttctgcgaat catacaaaac tatgttgcgc tcgcaaacct ttggactgat tgcctttctg 2640 cgaggcttga cagcgaaacg agggcgagaa tcataggtgt ccaatgtcag atgaaggagt 2700 tcgattattt tttcggactc aatttgggga atatgctctt ctccattacc gacaacctgt 2760 caaaaacgct ccagaagacg aagatgtccg ccgttcaagg ccagcggttg gcagaattga 2820 ccatcactac gctgtcaaac atgcgatccg agcaaaactt cagtgacttc tacgctctgg 2880 tgctacaacg acgaaattca ctggaatgcg aaatctccga accgaaattg cctcgtaaaa 2940 gagcgccacc gaagaaatta gatgacggaa gtgagccgta ccatccaccc gccgctgagg 3000 accgatatcg taccatgtac ttcagcgctt tggacgacat cgtgatggcc ataaccgaac 3060 gattcgacca aaaaggattc aaggtttacc ggatcgtgga ggaatttctt ctgaaagctg 3120 ttcgcggagt tgacttcaca tccgaaatgg ccaccataga aagcgagtac ggtaccacag 3180 acgtaaatgt tcgaaacctc acttcccaaa taccgatctt ccgacaactt atggagcata 3240 aggatgtcac gcatttcgac gacatctaca aggaggtaca gtctctcgat aaacccactc 3300 gttcgctcat cggcgagatc gtgaaattgt gtgtgctgct gctggtgaat ccggcgaccg 3360 acgctatagg cgagcggtct ttttcgacga tgcggcgact gaagacatgg ctccggtcca 3420 cgatgggcca gaaacggttc aacagcctcg ccgtactcag cgttcatcga gaacgcactg 3480 acaaaataaa tctggcagcc gtggcgaatg agttcgtacg cctcaatgat aataggagaa 3540 ggcttttcgg cgaattcagc gttgccgact tctgctaata gcaagaatgc agacggaata 3600 gcgtcgatgg aataatgatt gaacacgacc gttatagaca gtctcaatta tatcattata 3660 tcactcatta cattactcat tattcttatg tttgcattat atcactgatt aaatttcatt 3720 gtatatgttc ttgcaggtat tcgttgcgga gaagaaaata tcagaaattc gctcgaaatc 3780 tttgattttt ttagtcaaat aagcatcatt tcagatgtcg ctagaaccct cagaaagtgc 3840 tcgagttaag cggaaatcag tgccattttt cgaaattttc tcggggggag aacccccccg 3900 aaccccccta ctggggctcg ggccgtaggc ccttcgcggc gacggcctcc ggccgccgcg 3960 gctccgcggt cagttatggc caaagagttg gcaataccaa gatcacgccc gctccgcggg 4020 ccctg 4025 // ID Gypsy-50-LTR_NV repbase; DNA; NEM; 162 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-50_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50-I_NV; KW Gypsy-50-LTR_NV; Gypsy-50_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-162 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-162 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-50_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 536-536 (2007). XX DR [2] (Consensus) XX SQ Sequence 162 BP; 43 A; 29 C; 45 G; 45 T; 0 other; tgtagtgttc gagtgggtag gctgtgtagc cgggcgaggc ctgggtacga ggtaaaagta 60 aatcgccata ttggattatg tacatgcgta aactgagcga gtaaagcgtt gtgttcacaa 120 tcatcctgtg taatcttttc catccagaag ttagacacta ca 162 // ID hAT5-1_NV repbase; DNA; NEM; 4810 BP. XX AC . XX DT 30-DEC-2007 (Rel. 12.12, Created) DT 30-DEC-2007 (Rel. 12.12, Last updated, Version 1) XX DE Starlet sea anemone hAT5-1_NV autonomous DNA transposon - a DE consensus sequence. XX KW hAT; DNA transposon; Transposable Element; 5-bp TSDs; hAT5 group; KW hAT5-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4810 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4810 RA Kapitonov V.V. and Jurka J.; RT "hAT5 - a novel group of autonomous hAT DNA transposons RT characterized by 5-bp target site duplications."; RL Repbase Reports 7(12), 1188-1188 (2007). XX DR [2] (Consensus) XX CC hAT5-1_NV is a young family of hAT DNA transposons and it belongs CC to a novel group of hAT transposons, called hAT5, generating 5-bp CC target site duplications upon their insertions into chromosomal CC DNA. The hAT5 transposase is similar to the standard hAT CC transposase (they share conserved catalytic motifs and converge CC with each other after a few rounds of PSI-BLAST); identified hAT5 CC transposase sequences form a distinctive phylogenetic cluster and CC they are also present in different species, e.g. sea urchin. CC hAT5-1_NV is flanked by 13-bp TIRs and encodes a 781-aa CC transposase (3 exons). The transposase contains the C2H2 zinc CC finger motif present in diverse hAT transposase sequences encoded CC by different hAT transposons. DNA5-5_NV is a family of CC non-autonomous transposons derived from hAT5-1_NV. A copy of a CC DNA-TA-3_NV transposon is masked by "X". XX FH Key Location/Qualifiers FT CDS join(415..598,1578..2869,3214..4080) FT /product="hAT5-1_NVp" FT /note="transposase." FT /translation="MAGKCKFQDKWLLDPEFSKWIGRGSNDTEAKCKFCMK FT TFGIQNMGVSALRSHMKSKKHQNAGNNDSQSVKNFLETASKQRDAKNQETS FT KRQEVLESYCSANDVLRAEVIWSIKVVMSHYSYKSCEDISTLFKLMFPDST FT VADKFSCGEKKCAYMACFGIAEFFKRELQGRIQKLDEFVVLFDESHNKTTQ FT SKQMDIHVRYWDDLSSSVTTRYVTSLFMGHATAEDMLRVMTDGLKSNDIDF FT LKISQLSMDGPDVNWKFLYLLEEKRLEADEDAPLLINVGSCGLHVVHNAFK FT TGAKASQWNIEELLSSIYWLFVDSPARQEDFVEITGSSTYPLKFCKHRWLE FT NVPVAVRAQEIWDNIKTYVQAVLSQKKFTTPTSKSFKIVRDATKDILVPAK FT MAAFESVASQLQPFFTAFQSDNPILPFLVSRLQKVIQSLMKRFIKPDVLQQ FT ANSPIKLAKFDLSNKENYLDAKKVDVGFVAQAKIRKLLLDKKVSELQAFQF FT RNEFRDFMKSVVSKLLEKTPIAYSVARNLAFLDPVQIVEDKEGSISKFKVV FT LKKMVEYKRVQMRDCDALVHQYTDFADKAVLAQKEVFLKFNFVEDRLDTFL FT AQHIASQSSLAKLWKLVKVLLVLSHGQATVERGFSVNRQVMVENLQERSFT FT AQRVIHDHITHIGGLKKLEVSKQLLDAASQGRRRYVEYLDEQRKAQAKTIQ FT ENRKRKCKEREEDLEKKRMRLSCEIASLQFDADKFANEAEEKAQLFLLTKS FT NALRKCAKEKQKALKDVEDELADLTRKAEI" XX SQ Sequence 4810 BP; 1508 A; 905 C; 1010 G; 1387 T; 0 other; cagggttcgt acgggtcctt gaaaacctgg aaagtacttg aattttgaaa tgtcaaattc 60 aaggtctgga atatcctgga aactccttga aagtccttaa aattgttctt gggtttaaaa 120 aaaataaagt cagtttagaa gcatgtgttc tttgattcat ttatgtcaga aaatatttgt 180 taaaaacttg aatactcgcg tgaaaaccag tttgcgaagc tggcgtaggt cctttgtgtg 240 ggctccctgt tgtttgggcg ggaaaatgca ggcagcctct cgtttttgag cgcgaaaata 300 agtgagctta gcattcgctc gctacaaaca ttttctgcct ccgttcttca tcaatggttc 360 catgatattg ttgtccaagt attaattatg ttcgagtatt aaataaccga gacaatggcc 420 gggaaatgta aatttcaaga caagtggcta ctagatcccg agttttcaaa gtggattgga 480 cgaggcagta acgacactga agcaaaatgc aagttttgta tgaaaacgtt cgggattcaa 540 aatatgggag tatcagcact aaggagtcat atgaagtcga agaaacacca aaatgcaggt 600 aaattatatt tttactgtta ttgataatac cgttattcgt tatgtgctta tattgtgcca 660 cgggtttcct gtgatctgca aactctgtta cgttttcatc cacaaatcca acacgaggga 720 aaatggctca tttggaacga ctaagtttat acttaggttt catcagagac gaacgtctta 780 attcattaga agatttaaaa gaattccgaa ataacttggt gacgatctta tccaaaattg 840 aaaacggaca acaacaattt gacagagatt tcgtttcaga attccggtgt ttgttggaaa 900 gctacagaaa cacagagaga aaaactaaag agttattaac tcattttgat cttcttgaaa 960 aggaattaga gcaactccta gacatacgta acaggtacag ctaaaaatat ttactgaagt 1020 ttagacattg gtttataggc attctcaatt acacacgacc gccaagaaaa ccgccaaaaa 1080 accttgcgaa agaactcgtt ttttttgcaa aggtttccat gacaacactc cacggtactt 1140 tcgactgctt gtcttgatct tttttaccag aaagtccgtg ctactcgctg aattagtcct 1200 atttacctat gagatcaata tttagtacaa tttaaaacta ttggcgtttt attataaata 1260 gcatttacaa aaaaatcgat ttttcacttg atcattttgt tggcggtcgc gtgtaacgag 1320 aatggctgta agcattgaat taagctttcg taaaagcggt gcgctaaata tggcaataaa 1380 gtcaatgatt aaaattttgt gactttattt gttcccatgt tgcatcgcat tttatttcat 1440 gaaaaaggca cgcgtatcag gtaataattt ttataatatt aatgatatat gctaatatag 1500 cgcaacactt cctgagcact taacgatttt cccaacgatt cgaagttgaa aaaaatatat 1560 gctttctata attacaggca acaatgattc ccaaagtgtc aagaatttcc tggaaaccgc 1620 aagtaagcaa agagatgcaa aaaatcaaga aacatcgaaa cgtcaagaag ttctagaatc 1680 ctactgttcc gcgaatgacg ttcttagagc agaagtcata tggtcaataa aagtagtgat 1740 gtctcattat agttataaaa gttgcgaaga catctccaca ttatttaaac taatgtttcc 1800 cgatagcaca gttgctgata agttttcatg tggagaaaag aaatgcgctt acatggcctg 1860 ctttggtata gctgagtttt ttaagcgaga attgcaaggg cgcatacaga agcttgacga 1920 gtttgttgta ctttttgatg agtcccacaa caaaacgact caatcgaagc aaatggacat 1980 acatgtaagg tactgggacg acttatcgtc aagcgtgaca actagatatg ttacttcttt 2040 gttcatgggc cacgcaacgg ccgaagatat gctccgagta atgacagatg gcctaaagag 2100 taatgacatt gactttttaa agatatcaca actttccatg gatggccccg atgtaaattg 2160 gaaatttctt tatctgctag aagagaagcg ccttgaggca gacgaagatg caccgcttct 2220 gataaatgtt gggtcctgtg gtttacatgt cgtccataat gccttcaaga caggtgcaaa 2280 ggcatcccag tggaatatag aggagctact gtcttcaatc tactggcttt tcgtcgactc 2340 cccagctaga caagaagatt tcgtagaaat aacaggtagc agcacttacc ctttgaagtt 2400 ctgcaagcat aggtggctgg aaaacgtccc agttgcagta agagctcaag aaatttggga 2460 taatatcaag acatatgtcc aagcagtgct atcgcagaag aaattcacga ctcccacttc 2520 gaagtctttc aaaattgtga gagacgccac gaaggatata ctggtcccag ccaagatggc 2580 cgcatttgaa tccgttgcga gccagcttca accatttttt accgcattcc aatccgacaa 2640 tccaatactt ccatttctgg tgagcaggct gcagaaagtc attcaaagtc tcatgaagcg 2700 gtttatcaag cctgacgtac tacaacaagc aaactcaccc ataaagcttg ccaagtttga 2760 cttgtcaaac aaggagaatt atctcgatgc caagaaggtt gatgtcggat ttgtagcgca 2820 ggccaagatt agaaagcttt tgttagacaa gaaagtcagc gagcttcagg taggaatcta 2880 gcattcttat tattttcttt ttatgcagtt ttttttacta cgggacctct ttaggagtca 2940 aagtcaaggc ctaaaacgct gcatggagct acaaacaaaa gctgggtcca ttggttttct 3000 tacaaaacaa tggttaattt tccgtttaac aatataacta gcaacatttg ccaatggcat 3060 cattggattt agagctcgta ctgtatagag cggttttcat atgaactgta tagttacaga 3120 actgattgaa ctggtctcga tcgatctctg tttttgggtg gtaaaaaggg tttgaataca 3180 agaataatct tgcctttttt tcctttgttt taggcattcc agttcagaaa tgagtttcga 3240 gatttcatga agtctgtagt tagtaaactg ctggaaaaga cccccatcgc atattcagtg 3300 gcacggaatc ttgcgttcct agatcctgtt caaatcgttg aagacaagga aggaagtatc 3360 tcgaagttca aggtcgtact gaagaagatg gtcgaataca agcgagtgca gatgcgagac 3420 tgcgatgcct tagttcacca gtacactgac tttgcagaca aggcagttct ggcccagaaa 3480 gaagtctttc tgaagtttaa ttttgtggaa gacagattgg ataccttcct tgcacagcac 3540 attgcttccc agagttcgct agctaagctt tggaagcttg tcaaagtact tctggtttta 3600 tcacatggtc aagctaccgt ggaacgaggt ttctcagtta atcgccaagt gatggtggaa 3660 aacttgcaag aaagaagctt cactgctcag cgagtcatcc atgatcacat cacgcacatc 3720 ggaggcctga agaagctcga ggttagtaag cagctgttgg acgccgcaag tcaaggaaga 3780 cggcgatatg ttgaatatct tgacgagcag agaaaggccc aggcgaaaac catccaagaa 3840 aaccgcaagc gaaaatgcaa agaaagagaa gaggatttag agaagaaaag aatgcggctg 3900 tcctgcgaaa ttgcatcgct gcagtttgat gccgacaaat ttgcaaatga ggcagaagaa 3960 aaggctcagc ttttcctgct tacaaagtct aatgccctca gaaaatgcgc gaaagaaaag 4020 cagaaggcat taaaggacgt tgaagatgaa cttgcagatc tcactcgcaa ggccgaaatc 4080 taaaagagca acccatttga taccaaatag tctgagcttt tctcgcggct aaaatcattt 4140 gtaccggggc acacgttttc aaaacatccc ttgttttggg ctttcatctg tcaaaccatt 4200 gtttgacatt cttgacctgt gttccctatg gtaatcgccc ggcctggctt tctgtggcga 4260 tgtttctggt tttagttgag aggaaggcag gcgagcgctt taggaaagaa actgaacggc 4320 tcagatgatt taacatgcta aatgacaata caaattgaaa ttgatgattt gaatatgaga 4380 ttcaattatg tttgcatacg tcgcgatata attatgtctg catacgagcc caagaaaacg 4440 tcgtgttatt ttaacaagag tccttgtgcc atgcatttat tactaaacta cgaatttgaa 4500 cccagcattg ccctattatg tacagaccat atgttagata cgaatacgta ctggaaaact 4560 gagatcaaac tcttgtgcaa tgccaccaaa gtagaagata tattacactt tgttattatt 4620 attgaaactt tacttgggaa acaaacgctt atacgtcaag aaataaaaaa atgacacatg 4680 gtgtgtgtac ttgtatttac cttttttaat tcaaacgttt atttgggagt ccttgaattt 4740 ttataaaaca gtccttgaaa agtcctggaa agtcctggat tatttttctt tcaaaagcgt 4800 acgaaccctg 4810 // ID DIRS-39_NV repbase; DNA; NEM; 2393 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-39_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-39_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2393 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2393 RA Kapitonov V.V. and Jurka J.; RT "DIRS-39_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 435-435 (2007). XX DR [2] (Consensus) XX SQ Sequence 2393 BP; 538 A; 559 C; 550 G; 745 T; 1 other; ccgttatgcg agggttctcc gtctaatgaa gaggagaacg ttggttatgg cgccgaatcc 60 tgtccttcct ctccttcagc ggtcgggagt tctgctaact ctctggacgc aattcttgcg 120 gctgtccaga ctctcaatga gaaagtttcg gcgctgcaga ctgagcaaga caacctacgg 180 aaatccattt gttctaccga caatcacgac aatactaggc cagctgccgc agttgtttct 240 tccccgaata ttggccgtca agtgccgagt cagccaacta tcgctgatct tcgaggcgtg 300 gagggtttag tgcgccgggc cgataagcag ctggccgcgc ttcttctgga tatttcggat 360 gggtacgata gcggagacga agatagccct ccgcagcaac ccagtaatgt tcctaacacg 420 aagggtaagg gtaagttaaa atttgggaaa gagaccaaac tcacgagcgc tgttcgcttt 480 cctcagcact ggcctcatag ccatctcggt tttttccgag atagacaagg gaaggttcag 540 tacgaggact ttactctgga ggaattcgtt gcaggctaca ctcagatatc gctccgccct 600 gaattaacaa gaagcgagat gcagggccgc cagaaacact tactggatct catgtacttg 660 gctatgcaat atcaatggtc agctgtgtta agatatcatg aagccgtttt tttggaaatt 720 gaacggggct cactgaaatg gggcggttca ttttctcatt tagagagtcg cactttgtat 780 ggttacttca aatctgcctc cgctacgttg gacttgttac gtacagttcg ccgaaatcat 840 taccatatta atttaacggc ggagtttcgc aaggatatca aatggtggcg acgtttcctt 900 ctcgattata acggaatcag tatgataagc acggaacttt ggagtgaacc tagagctgta 960 ttctctaccg atgcttgtct cgttggtcgt gggggaatat gcggcgcgga gtactttcat 1020 gcaaattttc ctgactttat cctgtctcag gagttttaac cttaaaagca tcaatgcttt 1080 ggaactctta accattgttg ttgcgattaa gttgtggggc gcacgctggc atagcctaag 1140 gatactggtg cgctgcgaca atttagtttc tgttacagtc attaattctg gacgttgcaa 1200 ggactctttt ctcaacgcat gcctccgcga attatgttat tgagtcgatg gtctttggtt 1260 tcatccgttc aggctcaatt ctatgaggag ttcgcttata agcacaatag tgaactcagg 1320 gttcccacgt cttactttga acttgacaga tttctttaat tgttccaggc cattgtttgc 1380 aggctctacg cacggatctc cgtcgtactc gtcgggctgc ctacgccaaa ggaacttaca 1440 gtaacttacg aaattcgtac tattgttatt ttgttcttat aacgagctac agccagtagc 1500 tgctagtatt gacactattt gtttatatgc acagttcctt agtcgctctc tgtgtcanga 1560 gtagtattca aaattacttg tctggcgtta agttgttaca tactttctta gacgaggact 1620 gttctttcag tcagtccttt atatataatc ttactattcg gggtattaag cgcagtagct 1680 ttcattgtcc taatcgggcg cccccggtca ccccggaaat tctcgcgcgc gcgtcagcct 1740 cgcttaattt tctatctgat ccattcgatt gcacgatgca ttgtgccttt ttgttttcat 1800 tttatttgat gactcgtctg gccaatatta ttccagtttc acggagtcaa tttagcgctc 1860 gtcgtgatct cactcgagcg gatgtcgtta ttaattctac cggattatta gtgactttta 1920 aacaaaccaa gaccactcaa ttcggggacc gtccgttgca aaatcccctt ttgtccattc 1980 cgggttcgcc gttatgccct gttgctgcat attatcgcat gctctcgctt gttcctgcgc 2040 cgtccagcag accgctcttt ctgctgttag atagcaacgg taaatcgtat cccctaacta 2100 agcgggtctt ggtttctaca tttcgatcct gtctacgctt tgctggtgtc ccgaatgccg 2160 aggccttccg tggtcactcc tttaggcgtg gatctacctc ttgggttttc aaactcggtt 2220 tactaggcga acctattcaa cattatggtg gatgggccag tgattcttat aagctgtata 2280 tagatttgtc gcttacatcc aaattagctt tcgcatcaac ggttcgtgaa gcggttgcag 2340 cgcttcttta gtataacaca ttttacatgg ggttgacact gaattctttg ttt 2393 // ID DNA-5-18_NV repbase; DNA; NEM; 261 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-5-18_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP19; KW DNA-5-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 105-261 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 105-261 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-261 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-12_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 76-91% identical to the consensus. Originally, a CC portion of this transposon was reported as the unclassified CC NVREP19 transposable element [1,2]. XX SQ Sequence 261 BP; 58 A; 61 C; 69 G; 73 T; 0 other; caggcgcgtg tccagagggg gtccgagggg tccggacccc accctgctca tgtgacgaga 60 tgagttcgac tccggttgac cccttcgttg gtagttaaga agacggttaa ttttatgtgt 120 gtatttggat agaaaaagtt tctagatgga tctagtgacc tattaccaga gctaaggatg 180 ccgatttgaa cttaattgat ccgtggtcag tgaattacta ctctggaccc caccctgcgt 240 ttttctctag acacgcccct g 261 // ID DNA-3A_NV repbase; DNA; NEM; 418 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3A_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-3A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-418 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-418 RA Kapitonov V. and Jurka J.; RT "DNA-3_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 399-399 (2008). XX DR [2] (Consensus) XX CC DNA-3A_NV is a subfamily of the DNA-3_NV family. XX SQ Sequence 418 BP; 94 A; 94 C; 88 G; 142 T; 0 other; gggggggact ctccagaaaa gtagacgggg gtgatcgtca tatcttttag ggtataaaat 60 ttcgaccaac tgccatccct tagggggtgt tgaaggattt ttccgatttt gctatctctt 120 agggtataaa attcgaccaa ctgctattcc taagggggtg tttaacgttt ttttttccga 180 ttctgctatc tcttagggta taaaattcga ccaattgcta ttcctaaggg ggtgttaaac 240 gttttttttt tcgattctgc tatctcttag ggttaaaaat tccttcgacc acacccaatt 300 tgctatctct taggggtaag aatttctgtt gaccacgccc aaagtgccat cccttacggg 360 ttaaaatcga ttttgccgac gatcaccccc gtctgttttt atcggagtcc cccctccc 418 // ID Polinton-2_NV repbase; DNA; NEM; 21301 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Polinton-2_NV autonomous DNA transposon - DE consensus. XX KW Polinton; DNA transposon; Transposable Element; Polinton-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-21301 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-21301 RA Kapitonov V.V. and Jurka J.; RT "Polinton-2_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 648-648 (2007). XX DR [2] (Consensus) XX SQ Sequence 21301 BP; 5567 A; 5417 C; 5426 G; 4891 T; 0 other; agtagtaata taggtataca tggtctgctt atggtctgct aggggagggg tggtcaaggt 60 gcgttctgat tggtggatat atggtctggt gtgtgacgtc acagcctgca tcagccaata 120 gggtccgagt tatacggtga ggggtgtgac gtcacgctgt ggtcaggatt ggttggcgcg 180 cgcgcgacgt cacggtgacg tcagcgcggg aaaggatata agacggctag ggtcttctgg 240 gtggtaagca acaactcttc cgctatgaat gtgaagtgct tttgcggtgt cgaggctaaa 300 caaacggggt cagcgttaag gtgtggggcc aacatcgatt ataaaaacga ccagatcggg 360 tgtgggtact acttcaccac cgaccaagcc cagtgtataa aagagtacat ccccgagggg 420 aacacagtct ttgacttccc tgtgtgcgag ggtcacaacc tcatctgcaa accagtggta 480 agcgctggtc agttctctag tgggcgtgtc tattttcagt gtccagtgca ggcccccaac 540 caaaaatgca agcagttcgt gtgggcggag gagcccaaag agtcggagag gaagaagcct 600 gcagcagtat ggacacctcc cagtatgaag aagaagaaag cgccagcgag ggccaggaag 660 caaaccctca ccccccgcgc gggcgcaagc gcaaacgcaa acgtcccacc gcctccaccg 720 ccaccaccaa gcaaggttcc gtgcgtggta gaggaggggg aagaggagga ggaggaggag 780 ggtgcggagg aggaggaggt gactgcacct atgatgaaga agcaaaagaa gcagtggtag 840 tagacaatga cgatagcaac aacagttacg aggtggagga gaaggtggta gtggtggaca 900 gtgacgacag tgactgtggt gtgggtgagg tctaccccaa ccccatctat cacgatgtag 960 tggactccgc caacaaccta cacggtgtag actattacgt taagaaggta gtgtgggacc 1020 tgatgggcga ggtgttggag tacaagtccc tgcaaggtac gaaggacagc tggctaaaca 1080 tcttctatga ggttagggac gccatcaggg agaacactga ccacatgtgg gaagggttgg 1140 acaggatggt gaaagcgctt gggttcacta tgcgttggag tccttggttc tcctacatgg 1200 aggagctagt gagcaatggg gtcaccccaa aggatatggt gcagttgtgc cgtgacgaaa 1260 agctacctgg aatactagag gggaaggagg cagaggtttg gaaagtcacc agagacactg 1320 cccaccgtat agggaagggt gcccacctgt tcccgtttgg ggatatgtag agacattgta 1380 gtcattgttt acttttagtg ttttttttat tgttaccact atggttagta taaaaaatgt 1440 atttactggt tatagggtaa taaaagaaaa gtgtttgtgg tgaaagtcac tcaggctcgt 1500 ggtgttggtc cacgtcttgc gattcgctga cgttgcgctt gctgagggta cggcgtttcc 1560 cgcgtttgag ctttttcagc agtttgacct tccgctggga tttctctctc attttccttc 1620 ccatggactt atgcactttt gcgtctaggt ctagtagcat cggctggtac gtgcgcacgg 1680 cggcgctgta ccctaactcg tagtcagtgg ggtggtccat gtcctcgttg ggtggtgcca 1740 cttgcgttcc tttgtcacag gtgtctttat aatctgcgta atccacttgc atgcgtagga 1800 agtcgtactc catgcgtagg gtctcctcac gcccttgtag gacgccgact tcgtagcgga 1860 ggttggcatt ctctaagtct tttgcattgc tgacggactg ttcttctagt agttctctct 1920 ctaggccata caatttgctg ttgaggcttg agatttccat ctcgtagtca ttgcatagtt 1980 cccgcagcct cttgctctct ctctcggcct cctccacttg tccagctatc ctgcacaatc 2040 ttccggtcat gaagtccccc actgctccta cgtggtcgcg gaacgcttca ctgagtgcgt 2100 tcatgtttct tgctgagcgt gaggtgaggt agtggctacc ctccgagatc tcctcctcct 2160 cctcatcctc tatttcaatg gtgttggtga cttgggtcgt aggttggtcg gtcatcttgt 2220 gtttttttgg tctggtaaga ctatgaggag ttttgtggtg tgcgttgcct ttttataccc 2280 tttaaaagtg tttatggacg ccgatgacgt cgttgggtaa gtctctgatt ggttagtggc 2340 taaagttact tgtttctgat tggcttgggg ttatattacc tcttaggatg tctagacagt 2400 ggtcatgggg ttatcagatt taccgctgtt gttttctttg gggttcttca aggttaccat 2460 tcttctctaa tcttgcgtca ctcagttcca tacgcaggtc ctcgacctcc atacgcaggt 2520 tctggatttc caattccttt tctcctacca catcatttag tattagtact ctggtgcgga 2580 gggtttcgtt ttctgttgcg aagtaattac acattgcatt tatcgcatct cgctctctta 2640 tctccccctt ttgcaaatcg gctcctatcc gagctattac gagttgcacc tttctatccc 2700 caactctgct gaaactactc atccaagctg gcatggggtt ggggtttctg ttagccatct 2760 tgtgtttttt taggatgtct gttcgactga gggtttagcg ctatgcgacc ctttttatac 2820 cttttgggct gtctagacag tatagtggtg aggtcatcgg tgagggtttt gattggctta 2880 ggcggactat ggtgattgga tagaccaatc gcaggtctag atggtgtgtg acgtcataat 2940 attctataag acatgagctg ttattgggtg gttttcaaaa aagtgtttta ttggctggtt 3000 agtcctataa aagagggtgt acccccacta gggtttcagt ccctttggct gttccagcca 3060 tggcaaacaa caatgacgac tacgaagatg atgatgatga tgagtggctt agacgcttgt 3120 tggggatatt accagaccca agtgaggatg aggaggatga ggaggaggag ggggaggagg 3180 gtcagctccc ccctgatttt ttctatgatg agcttactga caccccccag ttcgcttctc 3240 tcgatgagtt gttcgactac ataaactatt atagcaattt agaggatgac tgtgtgtctt 3300 ctgaggaccc ttttttgggt atgactaccc cttcggatgt acaacaaggt ggtggtgggg 3360 taaagcgaaa gcatgacccc gaggacgata ggggggagtc tggtagtgat aaggaggatg 3420 tagtgtatga gttgcggcaa acatccacca agcggtctgt caaaatgcgc accgattgca 3480 ccgactacga tttgaaggtg gatttacctt tacgcgatac cctagaggag gctttggagg 3540 atgtggaggg ggtattggac agggtgctcg acgacacgct acgtggggta caagggcatg 3600 attacgcacg tattaccatc gacgctccct ctttgaggaa cccaattgcg ttaccattta 3660 tgcgacgtca ccaacttacc ccccagcgga tcatgggtgt catagagacg gttgtgcaat 3720 ctaaccaaca gtttgtgttc gagggcgact tcaggctcca tgtgatccgt actcatctcc 3780 catcaggggc tgggaaaaac aaattgaaga actcttgcac attgaacacg tgcgatttgg 3840 aggcgtggag gaaggggaaa agaagtatta tccgtattca gaacagtgac gagttatgtg 3900 ctgcgcgctc tattgcggtt gggatggcgt gtctaaccaa ggaccctaat gctaccaagt 3960 tgtataaacc tacacgggga cgcacacgtg gtcctttgct tcccttgcaa acggaacggg 4020 ctaagatgtt gcatgctgag gctggtgtgc ccgaggggcc atgtgggatt cctgagattc 4080 aacaattcca acgtcatctg gccgggcaag ggtttgaatt gaatgtggtg tcccgggagc 4140 acgctaacac tgtgatctac tctggggacc tacctgaccc aaagtatagg ctttacctat 4200 actacgccaa gggtcatttt gattacgtta agagcatgtc aggcttgttg ggtcgctgct 4260 actattgcac tgtatgcaag agagggtaca atagccgact acagcacaag tgtgtgaatt 4320 tgtgttatgg ctgcggtgag tcggattgct cccctttggt gccaccacca gaacaagacc 4380 accgttggga ttggaagtat tgccctgagt gtaacaggta cttccgtacc cccaagtgct 4440 ttgacaacca taaacttgct aaacctagag ggttagccaa caagaagaat gtcaccccac 4500 ggtcgtactg ccagatgtac cataaatgcg agacgtgtgg caagcgtatc gatatgattg 4560 ctatccaaaa ggaggggaca tcacatgtgt gtggggagta caagtgtacc gtttgtaagg 4620 aggtggtccc ccctgaccat ttgtgttacg tgacggttgg cgctgatgct ctaccaaagg 4680 acaaagacgg tgatgatagc atgcgcctta tcgttttcga cgtcgaggcg atgccattgg 4740 ggggtaaaca cgaaccaaat tttgtgggtg ctcaaaaact gtgtgacacg tgtaaggagt 4800 ggccaatgga tcgtttggag tgtgccacgt gtggagtccg gaagcacagt tttgtcacta 4860 tccaagcgtt ttgcgactgg ttattcggtg gtagtaatgc cgggtacacc tgtctggcac 4920 ataacttcaa ggggtacgac tcctatttta ttttggagta cctttttgag aatggtatca 4980 aacccaatgt tatcttcact ggtggtaagg tgatgcattt gaaggtggac tcattgaaca 5040 tcgatatgaa gtgcactttg aattttttac aaatgccatt gagtaaactc cccaaagctt 5100 ttgggttcga ccatgtcact cagaaaggtg tattccctca cttttttaat actgttgagc 5160 accaagacta tgtgggccct atgcccgatt tgagttacta cgatttacga agtatgaagg 5220 aggaggatgc gaacgctgtc gcccaatggc accaggagca agttacccgt ggggtagtgt 5280 tcaacttgag ggaggaactc gctaattatt gtcaccagga tgttgaagtg ttgaagaagg 5340 ctgtggtagc tttcgataaa cttatcatgg aggcagtggg cctccaccca ttcaagatag 5400 ctataaccat agcttcgcta tcgagtcgga tcctgcgctc gaaatttttg gagaagggtg 5460 caattggtct agtcccctta cgtgggtacc gtggccacga tgtgcagtct ttgaaggcgc 5520 tgcagtggct caaatacctg gagcgtcgcg acggagtgtg tatccaacac gctgggaatg 5580 gtggtgaagt gcgtctagct ggtagaatta aggtggatgg ttacgcggct gacacttaca 5640 ctgcctacca ataccaaggt tgtttttacc atgggtgccc tacttgcttt ctacccgaca 5700 ctgtgaatcc cttgacacac actactatgc gggagctccg tgaccacaca cgtgctacag 5760 agttacgcct gaaagcctta gggtataatt acgaggaggt ttgggagtgc caattcgacg 5820 ctaggttgaa cagtgatgta caactgcaag cccttgtggg ggaggtggag cattcgatcc 5880 ccctcaatcc ccgtgacgcc ttctttggtg gtaggactaa cgccatccaa ttgcattacg 5940 aggcaaaagt cggggagggg gagcgaatac attactacga cttcacatcc ctgtatccct 6000 gggtgaatgc cacgtgtgag taccccgttg gccaccccga cgctattgtc accgagaact 6060 ttgacgagga cctccgcgtg tacaaagggc taatgaagat ccgggtgtta cctccccgtg 6120 acctcttctt ccctgtcctc ccaatccgtg tcaaccagaa actgatgttc ccactatgtc 6180 gcagttgcgc cgagatggag gagcaaggga gttgtaacca ttcggatgag gagcgagcgt 6240 ttacagggac gtggtgtcac cccgaggtct tcaaggccct tgaggagggg tacactgtgc 6300 tccgtgttta cgaggtatgg cactgggagg agtgggagcg cttgttcaag gggtatatcg 6360 ataccttttt gaaatacaag caggaggcct cggggtggcc ggcgtggtgt gacaccgatt 6420 cggataagca gcgttacctt gacgagtacg agcggcatca aggtatccga ttggacaagg 6480 agaagatcgc aaagaaccca ggtctccgta gtgtggcaaa gatggggtta aattgtatgt 6540 gggggaagtt cggggagcaa cccaatccaa ggcgcaccaa atacgttagc gaacctatag 6600 agtatttcga tttgctgacg aacgatggca tcgaagtgaa cgatgtgttc attgtgagcg 6660 atgaccttat ccaagtccac tataaactgg gtgagagatt ccaagagttg aaaccacata 6720 ctaatgttat catagctgcc ttcactacag cgtttgcacg gttagcgttg tttaagctga 6780 tgaaacgcct aggaccgcgg tgcctgtacc atgacacgga cagtgtcatc tttctacaca 6840 gccctgggga gtggatgcca ccccttggtg actacctagg ggatttgact agcgagttag 6900 acgaggggga tttcattgac tgttattcat cgactggccc aaagagttat gcgtatacta 6960 cttacagtgg aaaatctgta tgtaaggtga aaggactgca cttgaatgtc cgtacggcag 7020 atatcgtcaa ccagaagact atgatggagc tcttggctgc taaggagggc gaagagcgtc 7080 acgttgttct cccctacacc attctccgta atacggctgc gaggaccttg cacacaatac 7140 cagcgcataa aacttttaaa atggtgtata acaaacgggt gcgcaggggg atgtcaacct 7200 acccctatgg ttactacttc ctgtgaagtc tactaaataa ctgtggtgat gacaataaaa 7260 aaaaaaaaaa aaaggttccc ccatctgtga tggtctgtgt cttatttttt tcgcataaat 7320 aagggggtgg gtgtggttag ggtatcactt gcgtcatggg ctgctttggt gcggatcctc 7380 tccatccacg tttcgattgt cgtacagcgt tggagcgcat gcgttgcctc tttgcgtgtt 7440 gcgggggcaa cattaacatt cgggactcac aactcgatgg caaagccccc aacaaaaacg 7500 aaagtggaaa aagagtatgg tacgaagagg aagaagagga gggggagggt ggcaacgatg 7560 atagtaagga agaaggaggg gagggggaag aagatgacca agaaagctac ctaccatctt 7620 cttcatcaga tctattacaa tccggagcat ccagcagctt tggggggagt ggacaaacta 7680 ctccgagcgg tacgttccaa gggggtgagt cgtgcccaag tggaggcatg gctccggacc 7740 caatccactt acacggtcca taaaccctat aggcgacgtt actcgcgcca acgggtgatc 7800 gtgaatggga tggatgagca atggcaagcg gatttgtgtg acatgcaggc gtatagttcg 7860 gtgaatgatg ggtacaaata catactcact gtgattgata tattgagcaa atacgggtgg 7920 gctgtccctt tgaaagacaa gacaggtccc cagattgtta aggcgtttga gggtattttc 7980 aagggtggac gtcaacctga aaagcttcaa acggatgacg ggactgagtt caagaaccgg 8040 acatttcaaa cgttccttaa atctaagggg atccattact tctctacgcg cagtgagctg 8100 aaggcctctg tggtggaacg gttcaaccgt acccttaaga cttggatgtg gcgttggttt 8160 acccataagg agacccgtcg gtatattgag ttgttacctg agttggtcaa caactacaac 8220 cactcctacc atcgtagtat ccgccgaacc ccagcggatg tagttacgta cgacgatgct 8280 caggaggtgt ggggtgtctt gtatgggggt aagaagacag atgtgaagac caaaaagaaa 8340 aaaaagaggc caccaccaaa attccatgtc ggggaaaaag tgaggatcag taaagtcaag 8400 cacatctttg ccaaagggta taccccaaac tggacagaag aggtgttcac ggtgggccag 8460 cggtacaatg acccaaaaca gaaagactat gcgtaccgtc tccgtgagta cgacgggtcg 8520 tggttggagg gacggtttta cgaacctgag ttgcaacctg tccacatcga cgaggaggag 8580 gagctgtacc gcatcgaaag agtagtcaag acacgtggga aggggagggg gagggagtac 8640 tttgtgaaat ggcgcggttg gcctgccaag tacaacagtt gggtatctgc cgagcaaatg 8700 cataaaattg cgcgagtcgt gcacccccct ctcagtcaca ccatgtacca tgacagagca 8760 acagccattc tacgtaacgt tacccagtaa cgccatcgaa ggtgctctcc ctggtaacac 8820 catcagcgat tttaccatac ggacgtcaaa gacttttgac ttacgtgatg ggagatggca 8880 agtggggttg gtgcacctta tctaccctag gtcatggttg aagttctcac ccgaggatac 8940 cgacatttgg atctatcata agaccccgga ccctgtttgg tatgccagtt gggctgacaa 9000 ggacaaccca aacgccctta tcccccaaga taaaataaat aataaatgga cgcatattaa 9060 actggatgat ttccaaaccc caaagtggca tcaagtcgcc ttcaacctca agaaagcggt 9120 agaccaattc aatgggggta gggtgaaggt gagaaagcaa cttggccaat gtgatgtggt 9180 agatgtgctt gtggctatag acacactgac gaaacagacc aacatagcaa tagcgaaagg 9240 gaaccaactt ctcctacggc cacgggctgc aatggcaata ggctacagac aatggatctc 9300 tggggagtgg gtcatgcaat tacaccctga cgatggtgtc ctcccaccca attaccagtt 9360 tggcccaacc gaggcacaca ggaccctgtt gaattgggta ccctttagct atgatgcttt 9420 gagcttgttt ccgggttccg gggacttcta ccccccagcc tcacggccct ttgcctccaa 9480 ggagtctgac attatcatcg aggacctaca acccttccaa aacatgtacg tgtactccaa 9540 catgtccgag gggaacctcg tcatagggag tgatagcagc aacctcttgc gtgtgataac 9600 acccgaggag ggtcatggcg gtgctgtgga gcgtgatttc accgtaccct attacttccc 9660 agtacgtacc caactcgtgg ataggattca cttctatata actgacgaca aagggcaacc 9720 catctcattc cagtctggtg cagtggtggg gacattgcat tttcaaccca tcctgttcgc 9780 ttgaacgatg gcaaacaggg agtacatact ttacgtatcc agctccgacc gagagttggg 9840 tggtgaaatt ggtgattttg ttgtgaggtt ccccaagacg cttgacctgc gcgatgggag 9900 gtgggaggtg ggggtagcct ccgtcaacta ccaaccccac tacgacacct tctccgacga 9960 ggaacacgat atttgggtta tgtgcaagca cctagaccac caaacagcct caccctcgtc 10020 aacagctgtg ccttacctcc aatggcacag ggtgaccctt cggcggtcga ggatggccaa 10080 ttggttgcaa ttgacagaga acttacggac cgctattgat ggctttaaca cgtccaggca 10140 aaccacgaga caagcgctac aacagaatta cctggactta gaaatggtgc ccgacgagta 10200 caacgagaaa gtagtgttca aagtgggttg gggtaaccgt gtgttgatac gaagacggct 10260 cggggcaagg cttggctaca ctgacgcctc tctatccgac gaggggccat tctacgcaac 10320 gttatcaccc ccaaacagtg taggaggcat ctcccaccca atagtgataa ggggggccct 10380 cccccctgac tatcccatca ctgagagaga ggcgccaaac ctacctgagg cgtctgttac 10440 ttcgcatctg ttgcctcaat ggactgtgtt cgattgctcc ctccccctgg gcagtgcaga 10500 tgtccgcgag tacccatcca gctcccaccc tgttttcgac gtcaaaactt tccaaaacat 10560 gtatttgtac tcgaatatca ccgacagcaa ctacatccta ggaagcagta cccggaatgt 10620 attacgcgtg atggttgaca aggggaaacc tggtgacagg ggtgttgagc gggtttttga 10680 cagaccattc tacttccccc tacgcctaca actcatcgac gagatccacc tctatataac 10740 agacgacact ggcagaacga taccattctt gtcggggggc tttgaggtga cacttcattt 10800 tcggcgtacg gtgcaatcat gaacatttta gcgggactag ctgcacctct cttagcgcct 10860 atccttggtc ccctctttgg tggacaacaa gggggtggct cccacgcaat agctgacgct 10920 ggtataatag gagggtatga catcagaaat ccaccccctt tcatcgatat ggagcaacgg 10980 ggtatgggga gcaaagcgtt ccgaggtgca cccattggac aattgggatg gggaggcagt 11040 cacggtgaag cgttccgcgg tcaccctgtg gtagtacaaa cagggggcgg tcttggctcg 11100 ctcgacacag acttaccctt tgacgtctca gggagtatcc ctattggcca tacgacattc 11160 gaaaccgcct cccctaacac aaagagacaa attgcccata gagtgaaaat tatgccaaaa 11220 actgtacctc tcggggtgcc atcacccatc gtccaccccc ccacgaaacc aaggagaagc 11280 catcaccgcc gccgtagagt cacaccctcc cacagacgcc aaaggggtgg ggctagacct 11340 atggatatct tcgactagag ggagaaggga taaaactacc cacaagtgac gtcatacccc 11400 cagtccacac ccacccttgc cacggagaag agctcccctc atctaccatg agtgctgccc 11460 gtgttttcga tgggtcacag caggtggcta accctggtgt ggggttgttc accatgccag 11520 ccacagacgt ggctttaaaa gatgggaaat ttatccccta cacacccagc gatgagagcg 11580 tcgaccacat tgagtggtac attcacccta ctacaaccta cattgacctc caaaaaacac 11640 acataaaact gaaagtcaaa atcaccaaag ccaatggtcg gacccttgag gttaacgagg 11700 ccgccgcctt tgtaaacaat gttggccatt cattattcag acaagtcaag gtggagttga 11760 acaacatccc tgtcacccta caaacggact cgtatccgtt caaagcctac atcagtaacc 11820 tactaaacta caccagggag ggacaagact ccttcttagg gtgtagtctt tggcataaag 11880 acacggctgg tagcatggac gccgccgtga taacaggcgt ccctgcgacg aacttaggac 11940 taaataaacg cgccacttac acagccttga gtgcggaggt tgggcttatc gtcaatctag 12000 acgtagatat cttcaagtgt ggacggtact tgttgagtgg tgtcccaatg aaaatcaggt 12060 tggagatgtc aaaagcggcc tttgccctca tggggggtgg taaatttgtc atcaccccag 12120 gctccaccct ccgcttgtac cacgtcaccc caacagacac ggtagctcta acccacgcca 12180 acgaattgct ccaccataaa ttggccaagt accctgtaac cacggctgtg gtcaaaacgg 12240 agcaggttga gaacgggaaa ctcaccaaaa agttcaacga tctatggaac ggactcatcc 12300 ccaagcggat ggtatttggt atcatcacca acgcagccta cgctgggagc tacgcaaaga 12360 accccttcaa ttttatcttg acggacatca ctaacattga gttacgggtg aatggggtcg 12420 agaccccctt cactagcatc aaaaacatcg caggggacgc tatagatttg tactacatga 12480 tgcatgaggg cataaatggg aaagcggcac gcacaaaagg cttgaacatc aaccgtgacg 12540 agttttttgg cgggtacggt ttgatagtct acgacctcac tgccgcaggg aacgcatcat 12600 ccgggtactt tcagccacag tataaaggca cggtgtcact ggacttaacc ttcagtacag 12660 cccccaccga ggtgctcaca gtagtgctgt acggagagtt caacaacacc atggaggtag 12720 acgcagcccg cagtataatg tacaccatcc aagggtaaaa aagtaccaga aagagaagaa 12780 gacatgaacg ccaacctcca acaggacgca atgtccacag aagagctgga ggctattgcc 12840 cacagtgacc gtcacatagg gcctgtgttt gagggggtgt acccttcgga cctcctacct 12900 accactatcc ctgagaatgg ttatggttac tcagcataca tcataaacac tgaccctagt 12960 ggtaggcctg gtacccactg gctagcagcc ttcttcacat cagaccgttg cgaatggttt 13020 gacagttttg ggtttggtcc agaggcgtac ggcaaggtga tggtggactt ttgtgcatta 13080 cgtccccaat tggtggcgaa ctcgcaccgt ctccaagctt taaactcagc cgtatgtgga 13140 cagtattgcc tattcttctt gtaccatcgc acccgcgggg gtagcatgag ggagatcgtc 13200 tcaaagtttg gcagtcagta caattggaac gaccaaatag tgtgttcgtt tgtacacgac 13260 ctggtgtgcc atggtcctag gcatggtacc caacgcagac ggtgcccttg gcgccagtgc 13320 gctgtgaaac aacaccattt agtgctcggg gtcaataaca ataacaataa ttataacaac 13380 cacaacctat ggatgtggcc ctagtgtaga gtggtctatc acaataaaaa acatgtaatg 13440 ggtaccctgt gtcttgactc attattcccc accgcttata tatacgggtg agggtaaaag 13500 tgaacggcac tagatccccc aaacacccca ggatggagga ccgacggttc cgttgccctt 13560 gtgccattat ggttgttggc ccaagccaat cggggaaaac tacctgggta cagagcttgt 13620 tacggcaagc ccctaaagct ttcgacaaac gattccataa aatagtttgt tgttacggac 13680 agtggcagcc caaatacgat tggatgcaga aaaaattagg ggtggagttc caccaagggt 13740 tgcctgactc tgtcaccgaa ctgtttggaa agcacgacac ccctggtttg ctcatcatag 13800 acgatctgat ggaccaaatt gatagggctt tgaaaatctt cacccaagag tcccaccacc 13860 atgacattac aactatattt atctcacaga acctattccc tggcggaaaa tcacgcaccg 13920 cttcgatcaa tagccatttc tttgtgatgt ttaaagaccc taggaacaag ttagggatac 13980 gtacgctggc gcaacaagcg ttccctggac aattagacta cgtcatggat gcatatgacc 14040 aagccactaa agagccctac agttgcctgc tgatagactt ccaccaaaaa acccccgaca 14100 acctccgcct ccgttccgac atcttaccag acgaattccc catgtatgcc tacttcccca 14160 aaaactctag gggtggtgaa gcatatatag aaggtgagga ggggggtaac acctcagtca 14220 acgatgccca acgtaagagg aagaggtcca aggggtgggt ggaccccgac gacccgtata 14280 cgacccacgg caagcgcaag gcgcgcagca gagtacaccc gcgccaggta cagggctgag 14340 gcaagattca atcgacgcct tgggttgtca ccacccacaa cccctgaagg tgtgaccccc 14400 ctctcttcgc ccaacaaatc aacgtcatca tcagcatcgt catcatcacc gtcacagcgg 14460 acaccaaggc cattaccacc actattacag ccactagcac caacactctc ccccctatca 14520 acctccaccc caatgcccca acccaccctg caactaccta ccccatggac agggctgccc 14580 acagacatta caccaccatc atcaccctgg agggtgaaca gtgacccagc cagaaagcga 14640 aaaaagaaag taggggcacc aaaacggccg tccagtgcca cgggccgtat tagtactaag 14700 aggagatcac caccacaggc ccgccccttt ggtcagttct ttgattttct agcaaggcgt 14760 ccagcaaccc cacagccctc cgaggcatct acggtggact atttgacagc agccaaccaa 14820 agccggacac caggtagcta tgggtcaccc tctacacttg cagtggtgag gccaagagga 14880 tcacagggct ccacgatccc cacaccctcc acaccctcca gaagtacccc ccgctcccgt 14940 aggggagcaa ggcgcagggg tgggagtaat ggaagtggtg ggggtggagg aggtagtgat 15000 ggcagtggtg gtggtggcgg tggtggtggt ggtgggagag gagggagggg gagatgaggt 15060 agaggtggga gagcaacaac cacaacaagg aagtgcgtca cccaaaagag acgccgtgca 15120 gatgggacca acgttaccaa gacaaagtgc gtcaccaccc aacgtgtaga caaccaacaa 15180 gtcggtgctg gtgttggaaa cactatggga gatttaccat ggagatccgt ttgggtgtaa 15240 acccataaat agcaagcgac ggacaccacc acaccactcc actatgggac gccgcgtgag 15300 aaggacccgt tgtgctaggc gaaagaagac agtgtgtaag aaaagaaggg gggtccatcg 15360 ctacagacag aggggtaggg gtatgcagcg tggtaggggt atgcagcgtg gggcccaaga 15420 ttacatcggt gctatctacg atgctgtaaa aaccctctct ggctaatgac cccaccactc 15480 gaccatggcc ttgagaaaga gcggacgctt tgtgaaaaga cgcaccaaac gtgtcacacg 15540 cgtaagaagg gggagacaca tccgtagggg ggtgtacgct ggtaaaacgg tacagcatgg 15600 tgggcgttac cggaaactct gggtgacagg acgtaaattg gataagattg accctgcatg 15660 gttgtagcta ccctataaaa aagggggagg tactccaccg gtaccattcc accatgtcac 15720 gccggttgaa gaggaacgcc aagttcctga acgacctttc tatcagcaaa ggtagaacaa 15780 gacaatacct cctaaaaaaa gcctctggtg agcaagtaaa cgcgttgggc gagatcgccc 15840 acaacctgct aaaaggcaac atccccctca acagggccca gcggaacaaa ctaagcgccc 15900 acaaacacag gatacgtacc ctagcgaaca aaagactgtc gggtagggag aggaaaaaag 15960 tgctcgtaag ccaacgaggg ggttttatca tcccactcct actaggtgcc ctgggggcaa 16020 gcgctggggt acccctgctc cagaaactaa tcagcaaaat ataaaaactt ataaattggc 16080 ggagagggtg acaccccaca cagtctgccc aagatagtca ccatgtcaac acaaaaaggg 16140 ggagcctacc gcatggcctt ggtgccagag cacatggcaa acctactcgt gactaaagag 16200 aggactacta tgccacccca actgcagatt gtggcacggt tggacaaaga tataaagaaa 16260 atcttaaaca acagaacact accattggag gtaaaagtac acctctataa cacagcactg 16320 acgcaatggt tagattggat acaacaagcc aaagacagtg ggaagagtgg gaacaaagag 16380 actgataccc ggcttacgtc cccccttggt ctcccctcac caccaagcag gtcaccaagc 16440 acacccttcg cacgtagcaa actgacctta ccaacaccac cctatagcac accaaggacc 16500 acaagaccaa aagccaaaaa gtcagctgag agtgtgagaa gacagatagc aaaaacaata 16560 gagagatggg acgatctttg aaagagttgt gacaacacgc tgtaatacac tgttctcttt 16620 ttttaatagc aataaaaaca ccttaataca tgtgtactgt ggtaaccctt actagtaggt 16680 cctagttagt tcaagtaggc tcttcttctt cttaccccct accccctcct ttacaatccc 16740 cataccacca cacacagggt gggtacattt ccatatctta ttacactcct ctacatcctt 16800 ttggaggttg tagcactcct cccatttctc gtaactacga cagttctcag ggtcggtaaa 16860 catgcacaca cggcgttgat tggtcttcag ccacttgcca aataaataga cctcagcctt 16920 gggacagtgc ttgggggtat cggagaaggt tgagtagaga tgatgtttgc atgccctctc 16980 gtgggcacca gtcataaagc tcacgtgcac attgctatag tgctcatgca actcttggta 17040 cttggggcaa ccaaacacct ccaaattcac gaaaggaatg caaaggtcca ttaggagccg 17100 gcgctcgcag ttgcccccct tgtacccaac aatccctcct tgaccgtaga tatcatacca 17160 ccccttgacg acacgctcaa gttcggcgtg agggatgctg gaaccagcgg tgaggtcaaa 17220 tttcagccct gtgacattct gtgtgacata acgtgccatc ctcctgtctt tttgggagag 17280 ctcactgtac ctcattggaa aagtgaagtg tctgccaacc acttcgtcat tgtgatggaa 17340 gaaccccact tccttgcaat gaaacacacc attcacatag aacccatctt cgtcgaggac 17400 acatgtaatg ttctggaaga caccttcttg cgcaacacaa ggttcaaagg gaccaaagag 17460 cgtgtcgtag aaagggccgc gcagtacata ctcagtgtag tccaacacat ccggtatcaa 17520 tccccactct tcccagccac tgacccacct tccactctct tgttctccac tgggatcttt 17580 ccctgtagcc attccgtaaa ttcccaacac aataaggaga aagtgacacg cgcgccaaaa 17640 aagagaccaa ccccaaatga acaccccctg acaaacgaag tgaaagcctc ctcccacact 17700 ggcgccatgg atgcacaaag aaatgcgcta gtaagacctc acccttttat atatataggt 17760 tgggaacgca ctacagacca atcagcattg agatacaatg ccaaccaatc acacacttta 17820 ttatatcaca aaagaaacac ctaagccaat aagaaagtag cgtcgcaaaa tactagacca 17880 accacagcac acttcccaaa gacgttagag ctgacgtcat cccacaatcg tataaatcac 17940 agcactcagc ccagaaacac tctcacacta gcacagccat ggctaggaca tcccacctag 18000 agccagccac taaaaaattc tgcgaactag caaaggacat atacaactct gaggggttgg 18060 cgtgtgtcat ttgccaagac gaccgagtca ccagtaactc atccctcacc ctattggacc 18120 gtctcccctg ttgtggacaa gtatgccacc aacaatgctt ctggaaatgg atacacttcc 18180 accgtaccga ggacatcaca tgccctcact gtagacacgc cttcccctcc acgacaagag 18240 gggtggtcct atggatcgac agtaacttta accccaagta cgaagaccac cctgcagagc 18300 agattatcgt ggaggagaaa gccaaaatac aaccagcctt cgaccgttac aaaaaattca 18360 tggcactcta cccagcccac tacaggggtc gtttcttcat aggggttgtg tgcagacaat 18420 gtgagcccat agccatgaca atatgtgaga aggaagaccg ccacgacttc gagctccccc 18480 tcttgctccc acgccgctcc acaagcaatt tgtcccacca atacaacaac gagatcacca 18540 agtacggcga gtggctttgg gagatagacg caaacaacga gtaccattgg ctcagggaga 18600 acgtgatccc cccaccaccc cctggggaac acgacaagag accccaatac gaaagcgata 18660 gaattgcctt catggaaaat gtggaagccg aactcgttca gcctgggatg cccgcaccgc 18720 agcccttcgt ccacgctttt aaagagtcca acgctgcatg gaacttttgc ccagacggca 18780 aatggtcatg ggagtacttc gacgccactg tcgtgatccc accacccccc tatggtcact 18840 gcctatggga ggagtacgca cgggacccta taggatggtg tgcacgcgac cacccctgga 18900 accgtgacga cctgggacaa gacgatgata tcgacgatga cgaaacggat gatgagaata 18960 acgacgactc actactccac tcactactca acccacccac tacttgggca gaacgctacg 19020 caatggatga ggaagagggg agactactgt taggagaccc agccccaccc acgaccaacg 19080 cagaacgtgg gacccaagaa caccgtttcc aacaaattgc actgacccta atgcaagtac 19140 gtaatgattt ccgcaacaac aacaacaaca acaacaacaa caacaacaac gatggcgaag 19200 aggtggatag ggatgcggac acgcggtcac catcacccaa cgaacaacag gtgatacaag 19260 aggacaacaa acggcaaaga cgcttagctt acataataaa ctcggtgggg ggagcactaa 19320 taatactact agtactacta ttggtgttgc tagggtagga ccacaactaa cacattactc 19380 cccctgcagg ttgtgagcga tatacaaagc agtgagcaag tagtctacaa cctacgcagg 19440 gggaggacaa tacgcccctt ccctgccacc caacgaagaa gaagacaaat cagaagacag 19500 cagtcaccca accccttctc aagggtaccc accatccgac gaccggaggg agaacgtcag 19560 agcctattgc agcgaagagg acaaccaccc ctcccacgac tacgtctgcg cctgacccca 19620 ccaccaccac catcacgtgt aataccacta cctcgggacg ctacaacaca cacacccgag 19680 ccccaacagg aaccagaggt acagtcgcac atggagccag accatgtacg ttatatgctg 19740 gagcgtatgt cggtaaacta tccaacctcc cgttcctctt ttgtagaccc aagaacctac 19800 ccaagaacct acgaacaggt cagagcccac atagacgcag tgatacaacg ccatgtagat 19860 tccatagagg accctgccca cattgcgtac ctcccaacgg gtgaagaaat agaggagttc 19920 cagcgcttta gtttaggact ggtaatggac acttactacg aataggggga gtggtaaaag 19980 agtagtattg taaaaaagac aacttttttt ctgctacatt cttttttatt aaaaaatgct 20040 caaactgcta caagcataag actagtgttc tctctcccac caaaaaaaac accctactca 20100 tcgccatagg ggaatgtctc cactatgcca agagcgacct cacgcactag gtggaaggtt 20160 gccttcttcg tcttctcccc ttttcttatc agctctggcg gattcgtaca gccatccacc 20220 cagtcttgca tcatctctat cagttcgtct ggggtgagaa gcgcaagtac cccctcgatg 20280 taatccttga ggtgtggtac tggtgggggg accctcatcg ctgtattcag cagtttgctt 20340 ccgaaccaaa tggcatcagc agccttcgac ttgacgtggt cgaaatattt aacccagcgt 20400 tccctgtagc gctttgggtc tgtgaagtag ctctcgtttg cgtcggaccg gaacatgaat 20460 gcgtcgacgg ctgtggccac caccttgtag gtgaagtagt tggtggcttg taccaatttg 20520 ttgacatcgc gggcatcggg cacctcaaac tttacccctt tggtagtctc cccctccttc 20580 ttcaccttgt cctcactgat ggggatgttg atggagatgt ccgggatgtt cagaaaggta 20640 ggacggtgta cttcgcggta tactggcata caccctgact cccatgggtt tatgcagcgg 20700 cagacggctg tgtttttgtt gtccagtgcc gcttggtagt ctttctccag cgctttcaca 20760 cgacgtgcct ccctctcctt gtacgctgca acagccccct ctctcatctt tgaccactcc 20820 tcccacttgt aacccacttg tggatcctcc caggcggcca catgctccat ccaagcctcc 20880 agctccatat gcaccgcttt gtcgagctct ttcccctccc agggttcttg gggtctctct 20940 ccgctactaa ggcatccctc actagacgct tcaactctcc ctccttcttt aactccttga 21000 cgtggcacgc ttcttttgtc tctgacatgt ttctcttttt ctctgctgtg cgaggtggct 21060 tttgcattcc catcgcgccg ttatatcctt tcccgcgctg acgtcaccgt gacgtcgcgc 21120 gcgcgccaac caatcctgac cacagcgtga cgtcacaccc ctcaccgtat aactcggacc 21180 ctattggctg atgcaggctg tgacgtcaca caccagacca tatatccacc aatcagaacg 21240 caccttgacc acccctcccc tagcagacca taagcagacc atgtatacct atattactac 21300 t 21301 // ID Rex1-23_NV repbase; DNA; NEM; 3411 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 30-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone CR1-23_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; Rex1; KW NVREP370; Rex1-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3411 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3411 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 721-721 (2009). XX DR [2] (Consensus) XX CC S = 99%. This family belongs to the Rex1 group. XX FH Key Location/Qualifiers FT CDS 144..3191 FT /product="Rex1-23_NV_1p" FT /note="endonuclease and reverse transcriptase." FT /translation="MALFYTREALKAVFTSAKAKPLSRNLWDTLNGLQISR FT FRPTRRSKRAGQRKQRPTSVSTSRREGSAVPGLAEMHSVPDISNLNEGINL FT HTPNQNLLNIQCDTQPSDKNNIGETETGPTRRHLRAKVPNVIVSNVMSLAP FT KIDEVKEFVLRKEADLVFITETWLKESVSDGVINIPDFSVVRRDRMEQMHG FT GVCAYIKDGCRFQHLKELNCCEDHESLWLHLRPNRLPRGFHCIIAAAIYHP FT PSADDQSLREHLFQSLALVESKFPNSGILLTGDFNRLDVSGLLRHFRLKQI FT VKVPTRKDATLDLILTNMHDHYAAPQAFPPFGLSDHNTVLAAAIDKKQNNN FT RKKTIIKRDLRTSSKAALGRYLISIDWSLLFAPLSDCDQMWNTFIEVVSTG FT LDIIMPEKEYHICAADAPWMTPGLKSIILKRQEAFKNHGPESVQFKFFRNM FT VNRERKVCRSRFYDSKVKQLKGENPKKWWDEVKRLCGAKVTNGDLTTQINI FT ENFSELPMQDQANRINSAFLEPLEVYRLNEPLERFPLEDEPVFLSVTEDRV FT QKVLSKLHPRKASGPDNVPSWLLKEFSDIMAQPITQILNASFKDQRLPPIW FT KMADVPPLPKTKPVLDLKKDLRPISLTPCVSKVAEEFVVTDFVKPAVLEVI FT GQDQYGAIPKSSTTMALISMLHAWALGTDGNGATVRTLLFDYRKAFDFIDH FT SILVDKLSRLAIPRSVVNWIIDFLSNRFQRIKLAKGCYSEWGPVPSGVPQG FT TKLGPWLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVNDII FT EWSHDNRVVLNPDKCKEMRISFARSPRPFDAITIEGKELEVVKSTKLLGLT FT ISDNLSWNAHVNEVVKKSSKKLYFLIQLKRARLPPSDLSLFYKACIRSAVD FT YAVPVFHNALPQYLKNELVRIEKRALSIILPRTSYDGACDLLGITPLEVHH FT GLICSKLFDEIVSDPNHKLKSLLPPSNVSSHNLRKKRPFALPRLKTNRAMN FT SFTFSMANKS" XX SQ Sequence 3411 BP; 966 A; 798 C; 750 G; 897 T; 0 other; gaatgttgtg cgcctaaccg gctgcatgca aaatttcgac tgtccataaa gttcattcta 60 accaagcagt tttacgacca aatccgtacc accatcagac ctacacagtt ccctacatgt 120 gttttactct tcattgattg gaaatggcct tattctacac cagggaagct ttaaaagcag 180 tttttacatc agccaaggcg aaaccactca gccgtaacct gtgggatact ctaaacgggc 240 tacagatatc acgttttcgt cctactcgtc ggagcaaacg ggctggacaa cggaagcaaa 300 gacctacttc ggtttctact agtcgcagag agggaagtgc agttcctggc ttggcagaaa 360 tgcattcggt tcccgatatt tccaacctca atgaagggat caatttgcat actccaaacc 420 agaacttatt aaatattcaa tgtgacaccc agcccagcga caaaaacaac attggagaaa 480 ccgaaaccgg acctactcgg agacatttac gcgccaaagt tccaaatgtg attgtctcta 540 acgttatgtc acttgctcca aaaatcgatg aagtaaaaga attcgttttg cgcaaagaag 600 ccgaccttgt ttttattacc gaaacttggt taaaagaaag cgtgtccgac ggagtcatta 660 atattcctga ctttagtgtg gtacgccgtg atcggatgga acagatgcat ggtggagtgt 720 gcgcgtatat caaagatggc tgtagattcc aacatctaaa agagctgaac tgctgtgaag 780 atcatgagag tttgtggctg catttaagac ctaatcgcct tcctcgaggt ttccactgta 840 ttattgccgc tgcaatatat cacccaccca gcgcagacga ccagtcactg cgggagcatc 900 tgttccagtc cctcgcgctc gtggagtcaa agttccccaa ctctggcata ctgcttactg 960 gcgatttcaa ccgtctggac gtaagcggcc tgctaagaca ctttcgcctg aagcaaattg 1020 ttaaggtgcc aacgcggaaa gatgcaacct tggatttgat tcttactaac atgcacgatc 1080 attacgccgc gccacaggcc tttccacctt ttggtctgtc ggaccacaac acggtgctag 1140 ctgctgcaat agacaagaaa caaaacaaca accgcaagaa aactatcata aagcgggacc 1200 tgcgcaccag ttccaaggcc gcactcggaa gatatctgat cagcattgat tggtccttgt 1260 tattcgcccc tctatcggac tgcgatcaaa tgtggaatac atttattgaa gtggtgagta 1320 ctgggcttga catcatcatg cccgagaaag agtaccacat ttgtgcagcc gacgcaccat 1380 ggatgacgcc aggtcttaaa tccatcatac tcaagagaca agaggccttt aaaaatcacg 1440 gccccgagtc agttcaattc aagttcttca ggaacatggt gaatagggag aggaaggtct 1500 gcagaagccg gttttacgat tcgaaggtga aacaactgaa gggcgaaaac ccaaagaaat 1560 ggtgggatga ggttaagcgg ctctgtggcg ccaaagtaac aaatggggac ttgactactc 1620 aaataaacat cgagaatttt tccgaactcc ctatgcaaga tcaggcaaac agaatcaact 1680 cagccttttt agagcctttg gaggtttacc ggttgaacga gccgctcgag cgctttcccc 1740 tggaggatga gcccgtgttc cttagtgtta ccgaggatcg cgtgcaaaag gtgttatcta 1800 aactccaccc acgaaaggcc tcgggccccg acaatgtgcc gagctggctt ctgaaagagt 1860 tttccgatat catggcccaa ccgattacac aaatcctgaa cgcatccttt aaagatcagc 1920 gactgccacc catctggaaa atggctgatg tcccacctct tccaaaaacg aaacctgtgt 1980 tggatctcaa aaaagaccta agacctattt cactaacacc gtgcgtgtct aaggtggcag 2040 aggaattcgt ggtcacggac tttgtcaagc cagcggtcct tgaggtgatt ggccaagacc 2100 aatacggggc gatcccaaag tcttctacca ccatggcgct tataagcatg ctgcatgctt 2160 gggctctcgg gactgacggg aatggagcaa cagtaagaac tttgttgttt gactatcgca 2220 aagcctttga ttttattgat catagtattc tcgtagataa gctgagtagg ttggccatcc 2280 cccgtagcgt tgttaactgg atcattgatt ttctttccaa tagattccaa cgaattaagc 2340 tagccaaggg ctgctactcc gagtggggtc cagtcccctc cggggtacca cagggtacca 2400 agctaggccc gtggttattt gttttattta tcaatgatct agaatgtaat tccccacact 2460 tatggaagta cgtagacgac accacggtct ccgaagtggt attgaaaggg gaattaagca 2520 gcgctcaggg gttggtcaac gacatcattg agtggtccca cgacaataga gtagtcctta 2580 atcccgataa atgcaaagag atgagaattt cgtttgcgcg ctcgcctcga cctttcgatg 2640 ccattaccat cgagggaaag gagcttgagg tcgttaaaag cacgaaatta ttagggctca 2700 caataagcga taacttgtcg tggaacgctc atgtgaacga ggtagtcaag aaatcgagca 2760 aaaagctata ctttttaatc caactaaaaa gggctcggct acctccctca gacttatctt 2820 tattttacaa agcttgcatt cgttcggccg tcgactatgc ggtgccggtt tttcataacg 2880 ccctgccgca gtacctaaaa aatgagctcg tacgtatcga gaaaagggcg ctatctataa 2940 ttttgccccg tacgagctac gatggtgctt gtgatttgtt gggcataaca ccattagaag 3000 tgcaccacgg cctaatttgc agcaagctct tcgacgaaat agtttctgat ccgaatcata 3060 aactaaagag cttgctgcct ccatcaaacg tttcaagcca taaccttagg aaaaaacggc 3120 cctttgcctt gccccgcctc aaaacaaaca gagccatgaa ttcttttaca ttctcgatgg 3180 ccaacaaatc ttaaatggag agtatatatg gtttttatgg attatgatta attttatata 3240 ggatgaactt tatcacgttt ttaaattttt atattttata tttattactg tatatagtta 3300 aatttattat agttgtaata tagtatctat tgttttgtaa atgcctaatt cagcctaagg 3360 gctgctacgc aattttttcc taataaacta tctatctatc tatatctatc t 3411 // ID hAT-6_NV repbase; DNA; NEM; 1465 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-6_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; hAT-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1465 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1465 RA Kapitonov V.V. and Jurka J.; RT "hAT-6_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 592-592 (2007). XX DR [2] (Consensus) XX CC Terminal portions of the transposon are not known. The genome CC contains only a few copies of the transposon. XX SQ Sequence 1465 BP; 451 A; 324 C; 338 G; 352 T; 0 other; tctgcaaacg ctgatccggc tttcacgcgc aatggtttta gcaactggaa gcacgcaatg 60 gacgcgaaaa agggatttcg taaacattag acctccaatt ctcacctcga ggcggttgaa 120 cgtttcgttt cagcccctac gacacccctt ggcgatgttg gcgagttatg agatcgaatg 180 tgagatattt ggctccccag gccttgcctt tgcgggatga atggaacaca gacacagcaa 240 gcgaggaaaa ctcgattttc taccaacagc caaaattgcg atcccaagaa aatcagtagc 300 tggaacggaa agacgacaag tacactgctc cagtaataca gaacgagatc ctccaagact 360 tggaacttgg caagctacga gatatatgac aaaatatcca agatgctgtt ttctacacca 420 tcatggccga tgaaacagca gatatctcag gcaaggaaca gctagttatt tgtatccgtt 480 gggtagatga caatattata gtgcacgaat acttcatagg gatgtatccc ctagagaaaa 540 cgacggcaga tgttgttggg gtgctaaagg gtgtgctggc taccatgcac ctcaacatac 600 aaaacgcacg agggcagtgt tatgataatg ctgcgaccat gtctggacaa agaacagggg 660 tggctaccca gataaaagct ttaaatggca agtgtttgta cactcattgc tatggccacg 720 cattgaattt ggcggtcggc gatgctgcaa aatctctaaa atgcatcaaa gactcacttg 780 agacagtcga aagatcggag cgatggtgct ttcgatcttt tctggtcttg cctactccaa 840 cgaaaaaatg cagaattttc gagtatcgag gacccaaccc ttcccagaca gagacgagta 900 ccagcaaggc aaaagattgg tagacaagga accaactatt acccagcttc cgcaaaggac 960 cactacaggc agatatattt ttttccacca ttgacgtggc cacagaatgc ataaacctcg 1020 gggttcaatg agactgattt tcaaatctat gtgaatatcc aagaggtact tttaaaatat 1080 gtgaaaagag gaagctatgg cgaggagcta gcccaagtgg tgtcaatgta tggtgactca 1140 gatatttact cgtataaact ggagagtcag ctttccctga tgccgcaaac tacagagtcg 1200 atggaattcg acaaatctag atttgatatt catgatctgc taacactcct agaaaatttc 1260 ggtgaagagc ggaagttctt gttatctgag atctgcacac ttggaaagat tatacttgtt 1320 atgccggcaa cgaatgccgt gagcgagcga tcattttcgg cgctcaaaag aatcaagacc 1380 tatctccgtt ctacaacgtt cgaatccaag ctaaatcaca taatgatgct tcacgtacac 1440 acggacatga cagacaggat tgacc 1465 // ID L2-22_NV repbase; DNA; NEM; 3226 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 30-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone CR1-20_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; L2; NVREP165; KW L2-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3226 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3226 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 718-718 (2009). XX DR [2] (Consensus) XX CC S = 98%. This family belongs to the L2 group. XX FH Key Location/Qualifiers FT CDS 305..2905 FT /product="L2-22_NV_1p" FT /note="endonuclease and reverse transcriptase." FT /translation="MFSHASSAISQQVVVLGDLNFDLLERPLPAPTKQYLS FT IFDSLGYQQLITKSTRPISNSLLDHIFVSSSDFVIEADTVSNTASDHLPIF FT VAWKLRAGYTRPTGHKVLRFRSRKNFCTESFMHDLSLVPWSTLDIYDDVND FT ALDQWYKLFNDILTVHAPIKEHRIKRPLKPDWFNAEISAAIKARNCLHRIA FT TSLKTDTSWSEYRRARNHVVHLIRKAKKTFYNDAIKNNLENPKNLWKIIRN FT ISPSKHVNLPNRLTVNDTLYEDTFDIANSFNEHFSNISSQVSIDAVPEFPD FT WSVLTNFINSKHQPGSYFSIPPISEDFVLNSLSRLDIGKAAGLDELNGFFI FT KSAAPEIFRSLTKILNLSISSCVFPDPWKSAKVSPLFKDGSLFDRTNFRPI FT SVLCILSKVLERHTHTSFYYFLTSQDLLTDFQFGFRWFRSCELATINLSDS FT ILKNMDNGLLSGMLLIDLKKAFDLVDHNTLLLKLGLYGCDELTLKWFKSYL FT SGRTQKTCFKGVLSNALPINVGVPQGSILGPLFFLLFINDLPLFLSSDFVT FT DTTMFADDTTFLISGPSVPDVELKLNKLAADVHKWATLNRMVLNTKKTKSM FT LIGSHQKISNLAESSLSVTLNSCPIEQVNSARVLGVVFDNHLTWEPHVEHL FT CKKINSRISLLRRIAPFLTPAGAIHYYNACIHSQFLYCASVWGNCSQTLQL FT LLLRSQKRAARTILSADFSVPSVSLFSRLNWLPICDLIKQRKLLTLFSILI FT NPDSPLCLRSKFSFVSHERRTRSSTSHNLVLPQPRTDAGKRTFSFSAVSLF FT NLLPPSLKQLADSRILNPNQLXNVTSLAKKKVRDIFHSHLNSVSHLEQLFC FT HTCRFYIDCRCYFS" XX SQ Sequence 3226 BP; 819 A; 739 C; 560 G; 1106 T; 2 other; aaacgggaga tctaatctca tccttggcct cagtgagacg tttttggacg aatcatggac 60 ggataccgag ttggctgttg atggttactc gctggttaga gctgatcgca catacaactc 120 tggtggcggg ctgctagttt tcatacccag ccatatttcc ttcaaaaggc gcgtggatct 180 tgagtttgaa ggtattgaag ccatttggct tgagctctta ttcccccgat ctagcccgtg 240 ctttgtttgt tttatttacc gtcctccttc ttctacttct gcatacatag ctcttttgga 300 cgaaatgttt tcacatgcta gctcagcaat aagccaacag gttgtggtgc tcggtgatct 360 taattttgat ctcctcgaaa ggcctcttcc tgcgccaacc aagcagtatt tatccatctt 420 tgattcgctt ggttatcaac agcttataac caaatcaacc agaccgattt ccaactcctt 480 actggaccac atttttgttt caagctctga ttttgttatc gaggcagaca ctgtttctaa 540 tactgcgagt gatcacctcc ctatttttgt cgcttggaaa ctcagagcag gttatactag 600 gccgactggt cataaggttt tacgttttcg atcccgtaaa aacttctgta ctgaatcatt 660 tatgcatgac ttgtcacttg ttccttggag cacacttgat atatacgatg atgtaaatga 720 tgctcttgat caatggtata aactattcaa tgacattctt actgtgcacg cgcctattaa 780 agaacatcgc ataaagcgcc ctcttaaacc tgattggttc aatgctgaaa taagtgctgc 840 aattaaagcg cgcaactgcc tccaccgcat tgctacttcg ctgaaaacag acacctcctg 900 gagtgaatat cgccgcgcgc gaaatcatgt tgttcactta ataagaaaag ctaaaaagac 960 cttctataat gatgcaatta agaacaacct tgaaaatccc aaaaatcttt ggaaaataat 1020 acgtaacatc tctccatcaa aacatgtcaa tctccctaat cgcttaactg ttaatgacac 1080 tttatacgaa gacacttttg atatagctaa ttctttcaat gaacattttt ccaatatatc 1140 ttctcaagtt tctattgatg ctgtccctga atttccggac tggtctgtcc taactaattt 1200 tattaattct aaacatcaac ctggttccta cttttcaatt cctccgattt cagaagactt 1260 tgtccttaat agcctctctc gtttagacat tggtaaggct gccgggttgg acgagttgaa 1320 cggttttttt atcaaatcag cagctcctga aattttccgc tccttgacta aaatcctaaa 1380 cctgagtatt tcctcttgtg tttttcctga tccttggaaa agtgcgaaag tgtcaccact 1440 ttttaaggat gggtctcttt ttgaccgtac gaattttcgt cccatctccg tactttgtat 1500 cctatctaaa gttctcgagc gccacaccca tactagtttt tattattttc ttacttcaca 1560 agaccttctg acagattttc aatttggttt ccggtggttc cgttcatgcg aactggccac 1620 tataaatctc tctgattcca ttctaaagaa tatggataat ggacttctaa gtggtatgct 1680 cctgattgac ctgaagaagg cttttgattt ggttgatcac aacaccctcc tattgaagct 1740 tggtttgtat gggtgcgatg aactaacact caaatggttt aagtcttacc tttctggacg 1800 cactcagaaa acgtgcttca aaggagtttt atcgaatgca ctacccatta atgtgggagt 1860 tcctcaaggc agtattctcg gtcctttgtt tttccttcta ttcatcaatg acttgcccct 1920 ttttctctcc tctgactttg ttaccgatac tacaatgttt gcagacgata ccacattttt 1980 gatttccggc cccagtgtgc ctgatgttga acttaaacta aataaactgg cagctgatgt 2040 acataaatgg gctacactca atcgtatggt actcaacacc aagaaaacta aatcaatgtt 2100 aattggttcc caccaaaaaa tatcaaatct ggctgaatcc tctctttcag taaccttaaa 2160 cagttgtcca attgagcaag taaacagtgc gcgggttctt ggagtggtgt ttgataacca 2220 cctcacctgg gaacctcatg tcgagcactt atgcaaaaag attaayagcc gcatatccct 2280 actacgccgt attgctccct tcctgacgcc agctggtgca atacattact acaatgcctg 2340 tattcatagt cagttcctct actgtgctag cgtttggggc aactgctcac aaaccctcca 2400 gcttttactt ctacgctctc agaagcgcgc tgcgcgcact attttgtctg cagatttttc 2460 cgtcccgtct gtttcgctct tttctcgtct aaactggctc cccatttgtg atttgataaa 2520 gcaaaggaaa ttattgactc ttttttcaat tcttattaat ccggattccc ctctttgttt 2580 gcgttcaaag ttttcttttg tttcgcatga acggagaaca aggtcgtcga cttcacacaa 2640 tctcgtgctc ccccagccca ggactgatgc tggcaaacgc accttttcct tttctgcagt 2700 ttctcttttt aaccttctac cccccagcct taaacaactt gctgactccc gtattttaaa 2760 tcccaatcaa ctacmaaatg ttacaagtct tgctaagaaa aaagtccgtg atattttcca 2820 ctctcacctt aactcggtat ctcacttaga acaacttttt tgccatacat gccgttttta 2880 tatagactgc cgctgctact tttcctaaaa ccggttatcc attctcatgt taattgttat 2940 tgcatgttaa ttaatgtttg tctgtttgta cttgtttcta tgttgacgtc tacctgtttt 3000 tgtagttagt tttgtagtta gtttttagtt gctttatcaa gatgtagtat tagtgatgtc 3060 ttgtatagtt taatttccaa gtttcccctt tgtatttccg taaatgtcta acatagtttt 3120 ttttattatt atcataggta cttagatata gggagggcca tatattataa aactgtaaaa 3180 ggttaatatg aaaccctcgt taaataaagt ttattgtatt gtattg 3226 // ID Gypsy-73-I_NV repbase; DNA; NEM; 3796 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-73_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73-I_NV; KW Gypsy-73-LTR_NV; Gypsy-73_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3796 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3796 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-73_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 572-572 (2007). XX DR [2] (Consensus) XX SQ Sequence 3796 BP; 1235 A; 1004 C; 898 G; 659 T; 0 other; aactgtaaaa acagacagaa actgtaaaaa cagaccgaga aatacagagt ctctttattc 60 ttgtactcca taggcggcga ggcatgtaaa acgttcaaca cctttcacct tacagaaaca 120 caaagaaagg atctcaagag catcatcgaa gcctttgacc gtttcgccac aggcgaaaca 180 aacgagatat ataaaagata caagttcaat agcagcgatc aaaaggaaag cgagtccatc 240 tcagcatacc tcaccaagct acgagccctg acgcaaactt gcaattcctg tacgtgttta 300 cacgactctc ttatcagaga tcgaatcgtc ctaggaatac gagataacga cacaagcaag 360 cgactgctgc aaacaaagaa actgtccctc gcacactgca tcgacacatg cctagccaac 420 gaagccacta aatcacaact taaagaggta gccaagcaga caggagagga gatggttaac 480 gaagtcagac aagctagaag gaaaactaag aagcgtgaca aatcacgata gaagcacgaa 540 gacggcaaat ccggaaaacg tgatctttag aagcacagct ccaaactgtg ccggtattgt 600 ggaaagcaca gaccgggacc cgacaggtgt gaagcacgtg gaaagttttg tacagcatgt 660 ggaaaaagaa actatttcaa gcgtgtctgc agaaaacgac aaaagaacaa gcgcatggga 720 tcgcagacga aacagactca agcgactcag attacctcga atacgtgacc gttaaagaat 780 ctgtcaacga aatcgggaac aaatacaaga tcaccgatga gccggtctac gcagagatga 840 caatagccgg aaatctaatc aagtttcacg tagacagtgg cgcatcagtc aacgtactac 900 cggaaatgta tgtcaccgga aatgatatca tcaggcccac aaacaaaacg ctggtaatgt 960 ggaacaaggc ggaactcaag ccgatcggcg tcgcaaggct aacgctacac aatccgaaga 1020 cagagaaaag acactcaacc gagtttgtga tagtcaagga ggatctaacg ccactactag 1080 gcctgaagac ggtgcaacgg atgaagctca tacaaatcaa agcgtgaaaa cttcaaaccc 1140 atatcaacag tcgcaccaaa acagtcgagc aaaagcacct taggagacga aaaagacatc 1200 atcagaaaat acaaagacgt ttttcacggg gatctcggca ctttggcagg cgaacagcac 1260 ttgaccgttg acccggaagt cacgccatcg atatcaccgt cacgccgact tccgttcgca 1320 atgaaatcta agctcaaaga cgagttggat cgcctgactc tgatgggcgt ggtgacccct 1380 gtcgaagaac cgatcgactg ggttagcaac gtggtaaccg caaccaagcc attcggagaa 1440 atccgcatgt gcattgaccc gaaaccactt aacaaagcct taaagcggga gcgctatccc 1500 atccccgtca tcgacgaggt cctaccagat ctggctaagg caagagtatt cacaaaggtg 1560 gacgcaaaaa aaccgatttt ggtcggctca ccaccttcgc cacacccttc ggcagatact 1620 gctggaaaag gctaccgttt ggaatttccg tgtcatcaga aatcttccaa aagaggctaa 1680 accaagccct agataagctg ggcggtgtac ttacggttca tgacgacatt gtcacctacg 1740 gcaaaggcta aacagacaat gaggcgaggg aagaccatga caggaattta aacgcattcc 1800 tggaccgctg tcgtgagcga ggcattaagc taaacaagtc aaatatccaa ctcagaccct 1860 cggaaatatc gtatctggga cacatagtca caaacaaagg actcaggccc gacccagcca 1920 aggtcgaggc taacgtcaac atgcctcctc cagaggacat caaagaagtg cgtagactct 1980 gtgggtttgt gaactacctc gcacggttcc tacctaacct atcagacaca ctagagccga 2040 tacaccaact cacccgccag ggaggtccat ggcagtggac gacaacccat agcaaggcat 2100 ttgacgcgct caagagaatg gtgtcgacac tcccctcctc acctacgacg atcctagcaa 2160 ggaattaagg atccagtgtg atgccagcga caagggtgtc ggggctgcac tcctacaaca 2220 gggccaacca atcgcatttg caagccgcgc cctcacggac accgagacaa gatactcgcc 2280 gattgaaaag gagatgctat cagtcgtttt ctccctccac aaattcgaac aatacgcata 2340 cgggcaagca gttacggtga acagcgacca caagccacta gaagcgattg cgaagaagcc 2400 tttgcgcaat gcacccaagc atctacaagg aatgctcctg aaaacccaaa agtacgacct 2460 cacaatcgag taaaagccgg gcgcgcaaat gcacttagcg gatactctaa gcagatcaca 2520 catccccgga gcccctagcg caaaggaaaa ctttgagcac gtccacgcag caaagtttgt 2580 accaatgtga gaaacaagag aggagcgcaa aaagaaatca accaaaggtg atgaagtcct 2640 ccagcttcta aagaggacct atcacctccc ccggaatttc ccatgtcctc tgtgatgggg 2700 gggggatgag atctcctctg accatactcg agggttggcc agagagcgca actgaggtaa 2760 cgccgaccct ggcacctaat tatggcttta gggacgagct agcagtacac gacggcctaa 2820 tttataggga aagggggaac gcctagtcat cccaaggcgc tcaaaccgga gatgcgagaa 2880 gaggctcaca gctcgcacat cggcatcaac agatgcatca gacgggctcg cgagagcatg 2940 tactggccat gcatgaacaa tgacatcaga aaccacgtgg cccaatgcgg gatctgccgc 3000 acgtacgaaa ccagacaaca aaaggaaacg ctacgcaacc atcctgtcac agacagaccc 3060 tgagagaagg tctccatcga tatctttacc ctcgagaaac gcaactacct agtcctatgc 3120 gactactact ctaatttcat cgagataaac catctcgaag acacgcgcgc accggcaacg 3180 ataaagaaga tcaagagcca cttctcccga tacgggattc ctgacaccgt ggtaaccgac 3240 aacggccctc agtttgcgtc tgaaaacttc aagcaattcg caaatgattg ggggtttgac 3300 gtccatccta gcagccccgg gcaccagcaa gtaaatggtg ccgctaaatc tgcggtaaag 3360 acggctaaga ggctactcaa gaaggcaaag gcaagcggga aagaccctta tctagcgctc 3420 ccagcccacc ggaacacacc ctcaatggcg atgggctcga gcccagctca gaggatgctt 3480 ggccggcgaa caaagactct acttccgaca accttggcgc ttctcaaggg atcaacattg 3540 aggggacaaa ggaaagaaaa tgcctggcaa acacgcaaaa gacctggagg cgctaaaaga 3600 aggcgacatt gtcctaatgc gccctttcct tctcaacaag aaaacatggg acaaggctgt 3660 cgttaaacag cgccttgaca acagatccta cgcgattgaa acggacagcg ccacatgcag 3720 aaggaacagg ttggacatca agagaacaaa tgagggaata cgggatgaca cgccagcgca 3780 aacagcacgg agtccc 3796 // ID TE-14_NV repbase; DNA; NEM; 411 BP. XX AC . XX DT 14-MAR-2011 (Rel. 16.03, Created) DT 14-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-14_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP87; TE-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-411 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-411 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-411 RA Kapitonov V. and Jurka J.; RT "A family of TE-14_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-MAR-2011). XX DR [3] (Consensus) XX CC The 143-bp 3' terminus forms a palindrome. XX SQ Sequence 411 BP; 126 A; 80 C; 84 G; 121 T; 0 other; ttaaggcctc tcgcgggtaa ttgttttcaa aaattcgttc aaattgaaac ccgtttagta 60 gccccttcaa agcgtgcgat cgatctgatc tttggcgaac ataatcacca atgcttctag 120 tttgcaaatt ctgaaataaa aattagatat taataatcgg cgaggcgcga cgcacgtgca 180 aatgaaatcg cagttttggg ggtttggtac aaaatctaaa aaactgtagt tgcaaaccac 240 tccattttgc gtatatgagg tcagtccaac ttgatgtctt atatgacaag cggacaaccg 300 aatcgattcc ttggaaatat cgaagagtag agtgacaaat tgacactcga ttttcttcga 360 tatttccaag gaatcgattc ggttgtccgc ttgtcatata agacatcaag t 411 // ID Helitron-N5_NV repbase; DNA; NEM; 2993 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N5_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N5_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2993 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2993 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N5_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 601-601 (2007). XX DR [2] (Consensus) XX SQ Sequence 2993 BP; 948 A; 514 C; 528 G; 1003 T; 0 other; tagcggagcc aagcgcggcc gcaggccgcg cgcgtagccc cataggcata gaaatatggt 60 ataggtatgc gacttggttt ttgtggtcat cgcgcgggta ccctgtggtg tcactcgcca 120 gccagccagc cagccagtca gccgcgcgac tcccaggccc cactcggccc cgaaatggcg 180 actaaataca agcacggagc aagggaaaaa gttcttgtcg attatgcgat gattatttat 240 tttgcctcaa attttgtgac ttaaggataa agtcaactag aggagatcta ctaacattca 300 ttcacgccaa gatttatctg gttttagcta gtaaatttaa gcaagtaaca gttcacatta 360 aaaagcgaac agaaccacaa gaaagcgacc aaaaaaaaaa caatgcaagg tgagtttcgg 420 acgacgattt gtattgtcta ttgaggatat gacagttatt aggctttttg ttgtcctttt 480 tgtatgcttt gagaatgcga gtacttaact tagtaatcaa attatttgag cataacaggt 540 tttgttttga cattcttcgt tttatctata ttcttgattg tgttgaataa aatacaatac 600 aacaaaaact ggaattcgtc tttaataaga cttcttcagg gcagattgat tgtgttgaga 660 tatttcataa aggctaacca atatcgtgtt gcatttgtca aatactgcta aagaagaccg 720 ttcttgtctt tatatcctgt gctcttagtc ctaagaagat acatatcctt agaagataca 780 gcagcttttt caacttacaa gagaaatttt ccttaccgag gataaaaaaa aaacctattt 840 tcaatatgta ttgttgttat tgtctgcatc ttgcatctca tgtgtttatt ttttttttca 900 aatagttgtg gaaaattagt tagattataa atggcttgat aaaaagattg ttttgaaaga 960 aataataaat aattgttttc actcttttat gaaccaggaa ctacctgagg gccaagatga 1020 atgctaaaga ctggaagaca tgagaattaa aaatcatgtc ttgaagagaa cagtaggatg 1080 ttcttattca ctagtcattt gataccccca cacccatggt cccagggaag ggtgggggat 1140 taaactttaa taaaagcctg tttccaagtt aagagtcaaa aacagtcaat accaccaccc 1200 ctcttgacat attctggtta aaaagtggtc taaaacccca cattaacccc tgacttctgc 1260 gggaccataa gggagggggc gcaaatgact agttcattac tatgtgattc agcagtacac 1320 actcataggt ttttttagaa caagatactt atataatata aaactaaaaa caaacttttg 1380 ctttttaaat aataaatctg taaagaaaac agttttctat caacctaaag ataatgggaa 1440 aggggatatt ttagaaaagt actgaatata attatcacat tattgttatt atattttctt 1500 ttcaaacatt taaggaagag tcatatttct tcctttttct tctccctgtt gactattttt 1560 atgcaattga tgctctttgc tatttcccct ctacaccaaa aataaattaa tgaacagatt 1620 tgatttttaa attagaaatt ttcatttatt actttcactt atattttctt tttaggattt 1680 tctttccaag tctcttgccc attacattta ttttagatgt ttagatttat ttcattggaa 1740 tagttagatc cagggtttct caaaacacca aaatataatg cattactgga tgtatatttg 1800 tagatattaa ttcccatggg gatggaaaat caccacttaa aatggtacat taaatcttca 1860 gcattgcatc ttatctaaaa ttgtgtctga cactatattc catctttgaa atcctgtttc 1920 atccattgtt cttcgcaaga acaaagcttg tcagaatgta gctttacaaa tgtacattaa 1980 tggaactttt attaagggga agggtttttt agggcaagat acttaaactt tataacacta 2040 gcaacaacct tgttcttttt caataataga attctgttca catagcttgg atagcaaaga 2100 catggcctct ttagaggcct gtggtggtga aagggttaag ataatgggaa aggggaaatg 2160 tcaagaaatg ctcaatcaaa ttattttcat tactgttata tttttttcac caaacctttc 2220 aagttgagtc aattcacttt atatctcctc tcccgtcgat tattttttag tcaattgata 2280 ttctttgatt cctctctacc ccaaacatag atcaatgaaa gggtttggtt tgaaattaga 2340 agttagcatt ttagcactgt cagtgatgcc ttggatgttt tttttaggat ttgcttccaa 2400 aatcaatctg ttttttcttc attgcattca tttgggagta ggccaccaac aacaaggcca 2460 ctatatggta aagtggggtg caccaatatg taatgcatga aaggagatat atttttggat 2520 tttaatttcc agacattttt ctgaatattc ggtccaatga aggagagaat cgccactaaa 2580 tcaatacata aaaatcacag tatggcatct aaacagtcta aatatattat tttgaatctt 2640 tggaatgctg ttacatccat gacattttct gcacaagggc aaagcttgtg ggagtattgt 2700 tttgattaaa aaaaagatat tcataatgga acttctatga tgggacataa gaatttacca 2760 ttagactctt gacaactttg acagccatat ccacaccagg aattgtgttt gttaactttg 2820 atgtactgca taatttaaat tattgaataa ggcctggatc catttggttg gtacaataaa 2880 taaatctcag tagagagcag gatcctagat cccccaataa tacctttgat cagtcaacac 2940 aaaaggtgtt tatgctggct ccgcttttag gcagtgccta aatctatata tta 2993 // ID Gypsy-3-I_NV repbase; DNA; NEM; 4231 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-3_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3-I_NV; KW Gypsy-3-LTR_NV; Gypsy-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4231 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4231 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-3_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 511-511 (2007). XX DR [2] (Consensus) XX SQ Sequence 4231 BP; 1313 A; 932 C; 901 G; 1085 T; 0 other; ttttttggcg acgaggattt cggaaatggc aacctacggc aaaatagatg aattcgacag 60 agattctgat tcatgggaac agtatatcga gcgtctaaac ttctattttg aagcaaatgg 120 agtaactacg tctgacgatg acttgaaaat acgccgtgca atcctcctca gttcggtagg 180 gaaaaaaacc tacaaattaa tgtctgatct gctggcccca gcgaaacctg gagagaaatc 240 ttatgctgac ttgtgcacct tggtaaagag ccatttcaac ccaaaaccga gtgaaagcgt 300 gcaacggcac aagttcaata accgtttcag attgagcggg gagaacgtgt ctgactttgt 360 agcggctcta cgaaacatgg cagaatactg caattttggt ggcagtctgg aaaatatgct 420 gcgtgatcgt ctggtgtctg gaattaacaa tgaaagaatc caaaggcgtt tgctatcaga 480 agagaactta actttcaaaa aagcttacga cattgcttcg tctatggaaa cgaccgcaca 540 gcacatggcc gaacttcaat ctgctccttc tacgttaagt tcaacgtctg catctgtaaa 600 aaaggtcagt tcttcgccct taccgcgttc taaaagcgaa aataaagagt gttatcgttg 660 tggaaaaaat caccacccgt caaaatgtcg tttcaaggag gccacgtgcc attattgtaa 720 aaagaaagga catattgttg ccaaatgtct caaaaaagca aaaaagtcgt ccgagacaac 780 caagccaaat tccaaccacc atccaaaaca agggaaacca gcaattcatg tcctggatac 840 tgataaagaa atagaagatg aagatatata tccattgttt gctgtcagtc aaggcaaccg 900 ccaaaatccg tatttagtag atgtggaatt aaatggtctt aaagttcaaa tggaactgga 960 cactggtgca tcactttcag taatcggaga ggacattttt gatcaattga agaacattga 1020 gggttcatct ctcaatctgc aagataccaa gctaaccttg aaaacataca ccggggagac 1080 aattccagtt ttaggaaagc ttgtagtgga agtcaagtac aaggacttct ttgaacactt 1140 gccagttata gtggtacaag gcaaggtgcc cagtctcttt ggacgagatt ggttacaaca 1200 tgttaagttg tcatggccag agattttcct agttcaagtt gtatcccctg atgtgtctga 1260 cctgctaaag aaacatgaaa atttattcaa ggaaggacta gggacaattc aaggagtgaa 1320 agcaaagata tacgttgatc ctcaagccaa acccaagtac ttcaaacctc gcacgttaga 1380 atatgcacga cgtcagaagg tagagagaga attggaccgt ttgttagaag aaggaacaat 1440 tcgtccagtt caattttcgg aatgggcaac acccattgtg cccattgtca aatctgatga 1500 gtctatacgc atttgtggtg acttcaaagt tactttgaac caagttagca aacttgacaa 1560 ttacccaatt cctaaaacag aggatctgct agctcaactt ggaggtggag tgcagtttac 1620 aaaactagat ctgagtcaag cttatcaaca acttgagtta gatgaagaat caaagaagta 1680 caccactatc accactcata aaggcctatt tgagtacaat agactgtgct acggcattgc 1740 ctcagcccct gggattttcc aacgcacaat ggaaaattta ctgcagggta tcccgaatgt 1800 tgtagtacga atagatgata ttctcattgc cgggaagaca tcagcagatc atctcaaaag 1860 tctaacagaa gtcctgtcac gtctggacaa agctggcgtc cgtcttaaac gttcgaagtg 1920 catttttcaa gcacctgaag tcacttacct gggacaccgc atagacaaag atggtatcca 1980 cccccttgac gagaaaatca aagcaattca agagtcaccg agaccttcta atctgaaaga 2040 actgcaagcc tttttaggca tgcttaacta ttacgcttgt tacataccta acatcactac 2100 aatactatct cctttacatc agctgttagt caaagacaca ccttggaact ggagtgaagc 2160 acatgaaaaa tcttggaacc aagccaagtc cacacttcac tcttcacaac ttctagtgca 2220 ttacagcttg gaaagagagt taacccttgc ttgtgacgca tcaccatatg gtcttgtttg 2280 tgttatttca catgtgatgg atgatgggac tgaacgtcct atttcatatg cctcacgtac 2340 tctgtcccca gccgaaaaga actattcaca gctcgacaaa gaggcagcag ccatcatgtt 2400 cggggtgagg aagttccact catacttata tggacggagt tttaccatct acactgatca 2460 caaacccctg ctgggtctgc tacagtcaac taaacaaata ccgacctcag cctcaccacg 2520 catattgagg tgggcggtat tcctgtcagg ctactcatac actttagtat atcgagaagg 2580 ccagaaaaat ggtaatgccg atggcctgag ccggctgcca ttgccaaatg aaaccagaaa 2640 tgttccagtg cctggcgaca ttatgtttgt aatgaatcat cttgaagtca acacacccgt 2700 taaagtcaag gacattgagc gttggacctc aaaagatcct attcttagtg cagtacgaca 2760 ccaagtaatg tccggttggc ccaattcaaa tgatcgcatt gagttcaagc cctactctga 2820 tagaaagcac caacttagct gtcaggatgg ttgtctactc tggggctctc gcgtagtcat 2880 tcctcctcaa ggaagagtca agcttctcca ggaactacat gatggacatc ctggaatggt 2940 tcgcatgaaa atgttagccc gaagctattt ctggtggcct ggcctggacg cggatattga 3000 gcaaaaggtg aaagattgca caagctgcca aagtaatgct aaggcacctt ctactgcacc 3060 cctacatccg tgggagtggc cgtctagacc ttggtctcgc atacatattg actatgcagg 3120 acctttcgaa ggacacatgt tcctggtgat cggtgatgcc tatagtaagt ggatcgaggt 3180 attcaagaca aactccagta ctgctgcagt aaccatccag aagttaagag aatgcttctc 3240 agtacatgga ctgcctgata tcattgtatc tgataatgca actgccttca taggtgaaga 3300 atttgccctt tttatgtctg agaatggcat aaaacacatc acttcagcac ctaaacaccc 3360 agcatccaat ggatttgctg aaagatatgt tcgcactttc aaggaaacaa tgaagaagat 3420 gggaggggaa aaggaaaact tagacacgaa gttaagcaga tttctactaa gctatcgtac 3480 cacacctcat gcaaccactg gtaaaacacc tggtgagcta ttaatgaacc ggaagctgaa 3540 gacgcgcttg gacctggtaa acccccttag tcaggacaca attcgcactc gtgtagaaga 3600 taaacagctc gcacagaaga aacaacacga caatctagtg ccactcagag aatttcaagt 3660 gaatgaccca gtatttgtca agaatttttc atatggtcca aagtggttat gtggaacaat 3720 tattcaacag tcaggaccgg tttcgtatgt cgttcaactc agttcaggtg gagtgtttcg 3780 acgacatgtt gaccatcttc gcctgaggac aagcacaccc acagtcgcca atgatcttca 3840 gagttcaaca gaattggccc aagttccaat gcaaacaact gtacccaagc agattccaga 3900 ggaatttaag gaacctgaga tcacagttcc agaaccttca ttggaaccga agaagacaga 3960 gcttccagct tctgaacctg caagtactct gcgaagaagt actcgactca aaaccacacc 4020 tactcacctc aaagactatg tatgttaatt ttaagcagca tatcacactg tgtacatttt 4080 tccggatctg atggattgac aacttgtcaa gaacttgtca tggacattgt tgttgttttt 4140 tacttgttga catattgtgt gtataaattt gatagtttta ctggcctcag caagcaagta 4200 tcttttagtt gtaaacttgg gtggggcagt a 4231 // ID Gypsy-31-LTR_NV repbase; DNA; NEM; 196 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-31_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31-I_NV; KW Gypsy-31-LTR_NV; Gypsy-31_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-196 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-196 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-31_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 494-494 (2007). XX DR [2] (Consensus) XX SQ Sequence 196 BP; 68 A; 45 C; 23 G; 60 T; 0 other; tgtcatgata tcatgcaacg cttcgctcac actagtaata tagaactaaa tcgttagaga 60 ttaatcacgc aatattattg taatctgaaa cttaatcctc tttctctcaa ctacatgcgc 120 tcgcttcaac acacaatgct tcatcctggc aattatactc gataaattga ttaaataaag 180 accgcaaatc attaca 196 // ID DIRS-22_NV repbase; DNA; NEM; 3405 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-22_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3405 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3405 RA Kapitonov V.V. and Jurka J.; RT "DIRS-22_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 417-417 (2007). XX DR [2] (Consensus) XX SQ Sequence 3405 BP; 621 A; 1039 C; 898 G; 847 T; 0 other; ttgtcggccc ttgcggccta tagttgcggc ccttggtggc ctatagttgc ggcccttggt 60 ggcctagttg cggcccttgc ggcctatagt tgcggcccct tgcggcctat agttgcggcc 120 cttggtggcc tagtcgcggc ccctggtggc ctagttgagg ccccttgcgg cctagttgcg 180 ccgcttgcga cctagttgcg gcccctgggt ggcttagtcg ccccccccct ctgggtggcc 240 tagtgcggcc cctggtggcc tagttggcgg ccatttgcgg cctagtggcc ttcgcggccc 300 tgtgcggttt ctgcggtttc acgggtgacc tcggcggccc gtgtggcctt tggcggcccc 360 tgcgacctat acggccctcg ccgtccagca agtggggtcc aagcattcgg tacttacatt 420 gttctcatta ccgttacacc ctccacccaa cctctccctg acgggtgctt ttcgtgtcct 480 ttgcagccat actgcccccc gtgtcgtccg tcacgcctct caatcccaac cgtttcgctt 540 gggagttgcg cgatcacccc gataaaaaaa ttaccttttt tgtgatcgac ggcatccgcc 600 agggctttcg gattggcttc gatggtgggc tatctctgag atcggctaca aagaacaaca 660 agtctgctag tgagttcccg ggcgtcatag acgaatacct ggcgaacgaa gtgcatttgg 720 gaagggttgc tggcccttca tattagcaat tcggggtcat ccccaagcgg ggccaaccag 780 acaaatggcg acttatcgtt gatctctcct acccagaggg agcaagcgtc aatgacggca 840 tcgatgggga ccttttcgca ctccattaca ttggggtgga tgacgtgctc caactggccg 900 acggtctggg gaacggagcg cttctagctt aatttgatgt tctagcagcc tacaggaaca 960 tccccgttca tccatcagac cgttacctcc tcggaatgaa gtagcgcaac tacttctacg 1020 tagacctcgc cttgcctttc agccttcgat cagccccttt cattttcaat agcgtagcct 1080 ccgctgtcga gtggatactg gtgatcaact atcaggtgac ccacctcgta cactaccttg 1140 atgattttat catggcgggt ccccccaact cgtcagtgtg tagcctcaat ctagctacgg 1200 ctctaagggt gtgcagcgag ctatgcttgc ccttgcaccc cgggaagtgc gagggcccct 1260 ctaccattct cactgtactc ggtatccaga tcgacaccgt caataggatc gctaagctcc 1320 cggaggaaaa actcgccgat attcgtggtc ttctggagca atggtcatcg cttaaatggt 1380 gcacgaggca cgaactcgag tccctcatag gccacctcca tcatgccgcc aaagtggtct 1440 ggccgggccg cacctttatt cgacgcatga tcgaccagct gcgctgcttc cgtcaccgcc 1500 aacatccaat tcgcatcggc tcagagcttc gacttgacct ccagtggtgg agagacttca 1560 tcgcctcgtg gaacggcgtg tccttctggc tgtacccggg gatggcagcc acaccaacga 1620 cagtggttac atctgacgcg gcgggcgcca tgggctacgg ggcctttcac cgcagcaggt 1680 ggttcaacgg cgtgtggacg gagcctcaaa agctcgaatc tatcgcgtat aaggagctct 1740 tccccatagt cgtcgcggct cacgtgtggg ggcattcgtg gcggaaacaa cacgtcctgt 1800 ttagaacaga caacgaagcg gttgtctgta ttctgacctc gcggacttca cgcattccta 1860 gcattatgca tttgctacgc agtctgcttc tagtcgcggc caggcaaggg ttctccttct 1920 ctgcggcgca cgttcccggc gtggagaact ccgtcgctga cgcactgtct cgttttaatt 1980 ggcaggcctt cctcacactc gcgccttggg ctgccccgtc acctacctca ataccccagg 2040 cggtcctggt ggagctaaca cagccaacct cgaagccaga tgccgggagc tgctactaca 2100 aggcttagcc cagtctacac ggaggtctta cgcttcgggc caaaaaagat tcatcgagtt 2160 ctgctctcag atcggtaaac ttcacccgtc gtcgggttcc ccgtgccccg cggacgaatg 2220 gacgctttgt ttgttcgcta cttacctgtc cagttctctg caatcttcat ccattaatgt 2280 ctacatgtct agcgtacgtg ccctacacat cgagcaaggg ttccctgacc cgcttgccgg 2340 tcgcctgcga ttgcaaaggg ttctacgtgg cataaagcgc acgctaggca caccaccctc 2400 ttcgcgcctt cccgtcacca ccgaggtcat gtcaatgatt cataagcatc tggatttaac 2460 gctgtttgac catgctatgt tctgggccgc atgctgcctg gcctacttcg gtttcttacg 2520 cgcatcagag tttacggtca acagtagtag cattttttcg ccagatctcc atttaagtgt 2580 cccggacatc tccgttgact ctatgtctaa tccaaccatg ctgcgcattc acgtgaaggc 2640 gtccaaaact gacccgttta gaaagggaac acacgtcttc atcggtagag ccaagccccc 2700 tgtatgcgcc gtggaggcgg tgctagggta cctcacccgc agaggtggcg cgcccggccc 2760 gttgttcgta atggaatcag gtcagccctt atcccgtcaa aagcttacta gttggctccg 2820 agaaattctc cagctcgaag gcgttcccgg taactattct agccatagct tccgcatagg 2880 agccgccacg gtggcggccc gcaatggcct accggaccac ttgatacaga ctctcggtcg 2940 ctggaccagc ggcgcgtatc gctcctatat ccgcacgcca gtcgacgttc tagcgggggc 3000 ttccagtaaa ctagtctaat aaatcagtct cccatgttcg ctggtgtgtg tgtggtgctt 3060 gtttcgtttg gggtctggag gtcccatggc ccctgccact ctccctcctt ttcaagcacc 3120 tttttggcgg gggattgtgg cctagttgcc atggttccct gggagagcgc ggctcgtggg 3180 ccgtcgcaat ccagtacctg accccaaact tatcagacga tgagtttaaa tgtgtctgaa 3240 tgcaatttag acgaggttaa aatcgagtct gaccgcgcga gcccgggttc tagtgctcgc 3300 ccctgagctc gctgtaggcg ccccctatcg catgtttttg tagcctgctc gacttgcaga 3360 gattcagagg agtttgtttt gccccgccct ccctcctctt ctttt 3405 // ID Gypsy-29-LTR_NV repbase; DNA; NEM; 160 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-29_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29-I_NV; KW Gypsy-29-LTR_NV; Gypsy-29_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-160 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-160 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-29_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 490-490 (2007). XX DR [2] (Consensus) XX SQ Sequence 160 BP; 39 A; 31 C; 34 G; 56 T; 0 other; tgtagtatta tgctatagct taggcatatt tgggaaccct ctgttatgtg tttgtacatc 60 cgggacttga gggtgagtcc gccatcttgg attaacacaa acgttgttgt tgactgttca 120 tcggtgtact tctctcaact caatcgatca taatataaca 160 // ID Gypsy-5-LTR_NV repbase; DNA; NEM; 213 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-5_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5-I_NV; KW Gypsy-5-LTR_NV; Gypsy-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-213 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-213 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-5_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 556-556 (2007). XX DR [2] (Consensus) XX SQ Sequence 213 BP; 59 A; 37 C; 51 G; 66 T; 0 other; tgtagtgatg tgtgcgtgat gtagcggaac agattaagag attaagttga tgattgtatg 60 acagttaggt cgctagtaat acgatgctgg gtgtatcaga tttagacttg aacccgatgt 120 cgaaagcgag tgaattatat tgttaaacgt cccaacttca ttgtaattct ttgtctctgg 180 gccaccaaac cctatcctga ccgagctatt aca 213 // ID DNA-TTAA-7_NV repbase; DNA; NEM; 385 BP. XX AC . XX DT 24-MAR-2011 (Rel. 16.03, Created) DT 24-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-7_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TTAA TSD; KW NVREP529; DNA-TTAA-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 12-385 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 12-385 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-385 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-7_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~77% identical to the consensus. It is one of the CC oldest familes of transposons identified in the anemone genome. CC It was reported originally as the unclassified NVREP529 CC transposable element [1,2]. XX SQ Sequence 385 BP; 132 A; 61 C; 68 G; 124 T; 0 other; gagagaattc attagaactt cgagcagccc acggccaaaa atcatgtacc aagataattt 60 ccatgatttt acatagtttt agggtatagc tttggatatt gtttgcacca ccgtgaaaac 120 ttttttcaaa gtttggaaat tatacagaat gctatagagt tgaaattgac atggaaagtg 180 attcagaaaa acagtgcttt ttggagaatt aaaatcaatt ttaacagctt ccaataaaga 240 tatttcaatg gaaacaccac acatgattac tgacatgttt gtttttaaag acaccaaaac 300 tattgctgca gactttaaaa tgtcctggta caagattttt gacgcccatt gatggaaatt 360 gctcgatatt ctgttggaat ttatc 385 // ID Gypsy-48-I_NV repbase; DNA; NEM; 3689 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-48_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48-I_NV; KW Gypsy-48-LTR_NV; Gypsy-48_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3689 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3689 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-48_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 529-529 (2007). XX DR [2] (Consensus) XX SQ Sequence 3689 BP; 1024 A; 1015 C; 835 G; 815 T; 0 other; atttactcaa catattaaca ataagacatg gacactgttc tgaagcctca ccgtctggac 60 ctggatccaa actcgcccac agcggcaaaa gaatggaaac actggctgaa gacgtttgaa 120 aactttatcg ctgaatgtgg gtcgagggcc ccggatcgct acagaaccct tatcaattat 180 gtttcgcata atgtatacga gtacatcgaa gactgctcaa cgtacgactc agccatccaa 240 gtactcaaac agctgtttat aaagacacct aacgaaatat tcgcccgtca ccttcttgct 300 acacgacggc agaagacagg agagacactt accgaattca agagctgaga agactaagca 360 aggattgcaa tgtcaaagcc gtatcagctg aacagtaccg agaggagctt atacgtgact 420 ctttcataaa cggcctaaac tccccgttca tccggcagag gctgttggaa aaccgagagc 480 ttgatctaaa gactgctttt gatcaggcga atgctcttga tctggcacag aagaactcgg 540 attcatacag cgtaccactc caaacagcgt ctgtctctgc ggtcccagaa cagatagaag 600 ctcagaaccc tgaccatgaa gttcctgtca ccgctgctgc gtataggccg tccaagagat 660 gctacttgtg gcggtccgct gcataaccgc aaagactgcc ctgccaagaa ctgctcttgc 720 aataactgtg gaaagggagg ccactatgct aaagtttgca agtcaaaagg ggctgcaaaa 780 ggaacagccg cctccatctg ctcgatttct gccgcgtgcc ctgagagtct agctcaggct 840 tctgtggaag ccagtattgc aggccactca ctgacagcac ttgtggacac tggcagctca 900 gggagctata tcaatgaagg ggtagtccaa cgcctcgggc tacaggtgaa caagtcaaca 960 gtacagagtg tatcaatggc tcttagctct atcacaaccc aagtcactgg ccattgtcta 1020 gtagacctca ccgtcaagga acacacgtat ccctctgttc gccttggtgt tctgaagaat 1080 ctatgcagcg atgtcatact tggactagac ttccagcgta gtcacaacag cgtaataatc 1140 caatttggcg gcacacagcc cgacctgaag atcacccatg aggcgcctgc ctgtgccctc 1200 tcagcagctg agatggagga accatcacta ttcgccaacc tactcccaga ttgcaaaccc 1260 gtagcgagca agtcaaggca atttgggaag gaagatcgag aattcataga gcaggaagtc 1320 aacagcttgc tgtcggaggg cattatcgag cctagcgcat ccccctggag ggcccaggtt 1380 gtcgtcgtga aagacccact acagcgtcac aagaagcgcc tctgcatcga ctactcacag 1440 actatcaact tgtatacgga actggatgcc tacccactac cacgtattga tgacatggtc 1500 aacaccctcg ccaattatga aatgttctct acgttcgatc taaagagcgc gtaccaccag 1560 gttcccatca aagaaaccga ccgcaagtac actggttttg aagccaatgg caggctttac 1620 cagtttcgtc gcattccatt cggagttact aatggtgttg cagttttcca gagggctatg 1680 gacaagttca tagacgaaga aggtctcaag gacacattcc catacctaga taacataaca 1740 gtagcagggc gtaatcagaa ggagcatgat gagaatgtcc gaaagttccg agaggcggtg 1800 cagcgccgga accttacctt gaacgaaagc aagaccatag agtcaaaatc atctatcaat 1860 atacttggct actgtgtcgg caggggagta atcacaccag accaagaaag actccgccct 1920 ctgcaagagt tcccgcctcc ccagagctca cagtcactca aaagggttgt aggaatgcta 1980 gcctactacg ccaagtggat accgaacttt tctgacaaga tacagccact atcacaagcc 2040 acaacgttcc cactgaatgc agcagctcta aatgccttca acgcactaaa gaaggaattg 2100 gagagtgcca ctcttcactc tatcgacgag agtgtaccat ttgaagtgga atgcgatgcc 2160 tcggaggttg ctatctcagc caccttaaac cagggcggac gaccagtcgc cttcatgtct 2220 aggacactgc aaggaagcga attacactac cctccagtcg agaaggaagc catggcaatc 2280 attgaggcag tccgcaagtg gcgtcatttt ctagcaggtc gtcacttcac cctggagact 2340 gatcagcgtt ccgtggcatt catgtttgac aacaggaaac gcacgaaagt aaagaacaat 2400 aagatccaag actggaggct agagttagcg tcattcagct atacagtgaa gtacaggcct 2460 ggtaaggata acgttgctcc cgattcactc acaagagctt tcactgcctc gatgccaaca 2520 agcagcctcg ctgagatcca tgcagcactg tgccacccag gcgtaaccag gatgttgcac 2580 tttgtgaagt ccaagaacct accctactct acagatgagg tgaagaaaac atgtgcagcc 2640 tgtaggacct gtgcagagct caagccacag ttctaccgac cagaggccag cgtcctcatc 2700 aaggccacac agcccatgga gaggctcagt atcgacttca aggggcccct tcctacttca 2760 actcataacc catatatcct cacagtggtg gatgagtact cacgctttcc ttttgcgttc 2820 ccgtgcccga acatgcactc ctccactgtt atcaagtgct tagaacagat atttactctt 2880 tgcggcacac caagctatat ccactcggac cggggtgcct cactcatctc acaagagtta 2940 aaagagtatc tatcagcacg agggattgca tcgagcagaa ccacacccta ccaccccatc 3000 ggaaatggtc aagtcgagcg gtacaatggt attatctgga aggcagtaca gcttgctctc 3060 aaatcgtcga atctaccagt tactaaatgg gaacaaatgc ttccagatgc tctccactcc 3120 atccgttctc ttctttgcac ttcaaccaac acaacaccac atgagaggtt cttcaacttc 3180 caacgccgct ccacgcacgg cacatcgcta cctacctggc tgcagttacc tggtccagta 3240 ctgcttcgcc gatttgtgcg tgctaacaag aatgaccccc ttgtcgacca ggttgagctg 3300 aaagatgcga accctacata tgcacacatc cagtatgcag atggaaggga atcaactgtc 3360 tctctcaggg acctcgctcc atgcccaccc cagaacactg ccccacagat gagtcaagag 3420 ggtacattcc aagggcaagc agctcctact cctacgactc cacccactga ttctggtttg 3480 aagacaccag cccccatcct tcctgatcct gatttggtgg cagaagttga gtcaggccct 3540 gctaatctac tgcgtcgctc aaccagggag atccggcggc catcacgctt tgactgttag 3600 cgccctgtat gatgctttga ctgttaacac cctgtatggt gaactttgaa tatttcccca 3660 tcattgttac attttatagg aggggaaaa 3689 // ID BEL-9_NV-I repbase; DNA; NEM; 4448 BP. XX AC scaffold_430; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: internal DE portion. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-9_NV_; KW BEL-9_NV-LTR; BEL-9_NV-I. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4448 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-3805 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_430; Positions 139724 135277. XX CC 'GACGT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 482..2020 FT /product="BEL-9_NV-I_1p" FT /translation="MQRSEATLPEMQPQVTMQLPSYRTPLVPTESYQKKTL FT SDLNPNAPPWNQSVEMQNIRADVSSAANHGQDKSFEKLAATLRQGFTLPRP FT EIQRFDGNPQNYWSFIRSFENKIDRNTSDESEKLTYLLQYCSGDAKRVISS FT CVTMDPTVGYRTARDLLRQRFGHPYTIASAHVKEITDGPTIKASDVQGLMV FT FADRLKNCENVLMSIDDIDEINSADNLRKVVERLPYSWRTKWLDRAGAIQE FT SGARPRIHHISKFVSDKARAANNPVFGTVCNDSKDKPRFTGNKNRAGTPSA FT NKGSTHNTHGAANDQLESGEKPDVKADVKAGYEARDKQGKCRLCDGAHFLT FT TCKDFANKYYEERLSFVRRARLCYKCFKGGHIAPRCRRDSACQRDGCTLKH FT HSLLHPKKAKGAESNPTDTKSGEGAGSKITSYPSNSGQCSRSTTGNSKVRL FT RIVPVRLRGRGGHSVATYALLDNGSDVSLCDTSLVQELGIEGVERSFFLTT FT QEKKESSKTGLEVKMKV" XX SQ Sequence 4448 BP; 1290 A; 922 C; 1254 G; 982 T; 0 other; ccattaaaag actcttgaag actgagaatc ggctgcagag tgtattgttt gggtgataat 60 ttagataaga agcagcaagt cgaagagagt tcgcgcgaaa ataattcgag acatcggaga 120 aatagagaat ttgccacgct ttaatatgca aattagcgaa gccattgaca aaagtcggaa 180 gaggaagccc agcgctgacg gggcattcaa tgacagattt gaagaaatta agttgggaga 240 ttctgcgagt gaggtaggct caaatgtttc catcactagc tctttgttag cgaagaaagc 300 ggctgcgaaa agggctgttg ctcaattaaa actaatgtaa ctacaaagga gacaaggaat 360 ggaaataaag gaaaatgaga tgaaacgctc tcacgaactc tttgatgcgc gatgcgaaat 420 agaacaggct gaattagagg ctaccatttt cgaagaaata aatgggtaag ggagggctca 480 aatgcaacgc tcagaagcca cgttaccgga aatgcaaccc caagtgacaa tgcaattacc 540 ctcctatagg actccactag tacccactga atcgtatcag aaaaaaaccc tttccgattt 600 gaaccccaat gcgcccccgt ggaaccagtc cgttgaaatg caaaatatca gggctgatgt 660 cagcagcgca gcaaatcacg gtcaagataa gtcctttgag aagttagcag ctacattgag 720 gcaaggtttc actctaccta gacctgagat tcagagattt gacggaaacc cgcaaaatta 780 ttggtcgttt attcgctctt tcgaaaataa gatcgacaga aacacttctg atgagagcga 840 gaagttgaca tatctcctcc agtattgttc cggtgacgca aagcgcgtca ttagtagttg 900 cgtgacaatg gatccgacag tcggctaccg taccgcccgg gatttactga gacaacgttt 960 tggccatcca tacactatcg catctgcaca cgttaaggag attacggacg gcccaacgat 1020 taaagcgtca gatgtacagg gcttgatggt gttcgcggac aggcttaaaa actgtgagaa 1080 cgttttgatg tcaatagatg atatagacga aataaatagt gcagataacc taagaaaggt 1140 cgtagagcga ttaccgtact catggagaac caagtggctt gacagggcgg gtgccataca 1200 agagtctggg gcgaggccta gaatccatca tatctcaaaa tttgtttcgg acaaggctag 1260 agcagcaaat aaccctgtgt tcggaactgt gtgtaacgac tctaaggaca aaccaaggtt 1320 cacgggtaat aagaacaggg caggcacacc tagcgcgaac aagggtagca cacataacac 1380 tcacggggct gcgaatgatc agcttgagtc aggcgaaaaa ccagatgtga aagcagacgt 1440 gaaagcgggc tatgaggcgc gcgataagca agggaagtgc aggctgtgcg acggtgcgca 1500 tttcttaacg acgtgtaagg attttgcgaa taagtattat gaagagcgcc tttcctttgt 1560 tcgacgcgcg aggctttgtt ataaatgttt caagggtggt cacatagcgc caagatgtag 1620 gcgggacagc gcgtgtcaga gagacggttg cactttgaag caccattccc tgttgcaccc 1680 caaaaaggcg aaaggcgcgg aaagcaatcc taccgacacg aaatccggag aaggcgccgg 1740 ttccaagatt acatcatacc ctagcaactc cggtcaatgc agtagaagta cgactggcaa 1800 cagcaaggtg cggttgagga tagtaccggt aaggctaaga ggaagaggag gacacagtgt 1860 tgcaacatac gctctactcg acaacggatc agacgtttcg ctgtgcgata caagtcttgt 1920 gcaggagctt ggaatcgaag gagtggagcg atcgttcttc cttacaacgc aagagaagaa 1980 agaaagttcg aagacgggtt tggaggtgaa gatgaaagtg taatcaatcg acggtgctga 2040 gaagttagac atcccgaagg tgtggacggt gcgaaagctg aacgtttcag ctagtagtat 2100 accgactgat cgagacacac agaactggga ccatttatag ggcatcaact tgcctgaaat 2160 cgacgacaaa gagatatgtt tgctcatcgg gggcaacgtg cccgaagcat tctgggttct 2220 agaagagaaa cggggcggca gaggccaacc gtatgcagtg cgttcattgc tatgatggac 2280 gcttctcggt ccaacagagg aatgctcgac agaggccgat ggcggtagcg tgaacttcgt 2340 gcgcctagac gagtcagagg tggaaggtga cgacccttta ttaaggaagc taaagaggtt 2400 ctggaaatcg gacttcgtag ataccggtac cgctacgcaa gcgtccatgt cagtggaaga 2460 caaaagagct ttagcgaaga tagaagagtc agttgggatg gtggacgggc attatcagat 2520 gtcgttgcca tggagaaagg agcctcccta tctccctaat aatagaccgt tagccgaacg 2580 tagactctgt tcgttaaaaa agagattcca agccaatcag gagcttttcg acatgtacat 2640 gactgctgta gatgattttg ttgcgaaggg atacgcgaga agggtccgag aagaagagtt 2700 agaggcttct ggcaagcctt tgtggtactt accacaccat ccggtcgcac atgctcaaaa 2760 gaaagggcgt gtgcgcgtag tgttccactg cgcggctaag tataatagca cttcattgaa 2820 cgatcagtta taccagggcc cagatctgac tagcaatctg accggggtgc taacgaggtt 2880 tcgacaggag aaggttgcca tagtgtcaga cgtggaagct atgttttatc aagtgaaggt 2940 tgataagtag gatcaagacg ctctcaggtg gtggtcctat ggtggcccgg caatgacttg 3000 acgaaggagc ctgtcgacta cagaatggaa gtacacatat ttggaggaac gtcttcatca 3060 ttctgtgcaa actacgcact gcgacgtaat gcagatgata acaaggaaga ctttgaacca 3120 gaagtcgtga gttcagtgaa gaagaacttt tacgtagacg actgtctgaa gagtgttgag 3180 acaacagaag aagcggtgaa gttatcgagt gatctgagag agctgttgac acgtggtggt 3240 tttaagctca cgaaatggct aagcaaggag aaggatgtca ttgaagcgat ccctaaaggt 3300 gaatgagcaa agtctgtgct ggatttggat ctgaacgaag atgagcttcc ccgacagagg 3360 acactaggcg tccagtggaa tgtagaaact gatatgtgtg agtacacagt cagtcccaag 3420 gagaagccct ttagtcgtcg aggtatactc tcggttacga gcccggtttt cgatccgata 3480 ggatacctgg ctccagtgat actgccggca aaattgctgc ttcaagactt gtgcagaatc 3540 ggatacggat gggatgacac cgttggagac gcggaagcgc agagatggaa ggcttggctc 3600 gaagagctac cgacgttgtc agaagtcaga ttggagagat gtataaagcc accggaattt 3660 gggagagtga agaatgtcca gttacatcat tttgctgatg cgtcgtcgta cgcttacgga 3720 gccgtctcgt acatgcggct ggtcgacgtc gattcactgt gcgttcttgc tggcgaaatc 3780 gcggctaggg catatcaaac ctatgacgat acatcgcatg gaactgtcgg ctgcagtgct 3840 cgcagtcaag ctagatgaga tactgcgcag cgagctagaa acaaccgtgg acgagagtgt 3900 tttctggtcc gactccacgg cagtcttaca gtacattcgt aactgcgatg atccacacgc 3960 gcgatctgca agccttaacg cccaaccatc ttttactgtt gaggtcaaac atgaacttac 4020 caccagggct ttttgatgag gccgacggct acttgaagag gaaatggagg caggtgcagt 4080 atttggcgaa cactttctgg aaacgttgga tcgctgaata tctacctacg ttacaagaac 4140 gacaacgatg gcggaagcct aggcgcaatt tccagattgg agatctggtg ctggtagcag 4200 atgagagggt accccgaggg cattggcctc tcggtcgtgt cactgcagtc tgcgagggac 4260 gagacgggta tgtgcgctcg gtgacggtca agacgaggaa cgaggcggag ctcaagcggc 4320 cgatcgcgaa gctgtgccta ttagaggcgg actgagacac tagtgtgttt gttagtttaa 4380 gtacccgagg tatcgacgat agtaaggtag ttacagtaga tgaactcgtt agtccatcgg 4440 ggcggcga 4448 // ID DIRS-N1_NV repbase; DNA; NEM; 5654 BP. XX AC . XX DT 28-MAR-2011 (Rel. 16.03, Created) DT 28-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DIRS-N1_NV nonautonomous retrotransposon - consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; Nonautonomous; KW NVREP392; DIRS-N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 4711-5654 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 4711-5654 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5654 RA Kapitonov V. and Jurka J.; RT "A family of DIRS-N1_NV retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~95% identical to the consensus. Its '3-terminal part CC was reported originally as the unclassified NVREP392 transposable CC element [1,2]. The 3' terminal part is similar to that in CC DIRS-24_NV. XX SQ Sequence 5654 BP; 1216 A; 1465 C; 1825 G; 1117 T; 31 other; atgtatgcta cattagcata atttagcata agttaaaatc gaggatgacc gctggcgcct 60 gggcccattt ccattcaagc cgtggcacgt ttgcactctc tcttgaatcc ctgcaaattc 120 atgactcagc acgggattcg gggatatttt ggcgtgtttt taccgtgtaa gaggtgtaca 180 aaacagaaat cttcgctagg cttactagtc ccggtcatgt tcttatccct ggaggttttt 240 tagaagctat ttcagcggcg ttggaggcgg ctaagtcggt aaaaacatct caccacagca 300 atcaaccatc aacagcaggg cacatgtgct agtagtggag caaactgcag agatagccgg 360 cgagagtatt tgtcccatgc tctgttgaga ctgacacgga aggtttgttg gggcggctat 420 acactatagg tgtatttgat cgagttcttc gctcctcttt tgagaacggc tatkcgtgag 480 tattmactta agtaaggtaa cttacttcag attactatat ctgaagtata tgctcagctt 540 attttatcgt catgtcgggt gattccggct gattaattgg tggaatgcta tatatatctt 600 agcktgggca ggtaactgag gctggcacag agtcgagcaa aatagccgag tgtcgtggat 660 aacagcaacc atgtcaacaa caccagsacc gcgtggaact agtcagtgat ggacagtctt 720 aatttaggga gagctagctt ggggtttttt tattgttgta gcaatggcat tacacggtgg 780 tgacatcggt agtatagtcc attatatggt ggggcattgg atctgtttat aggggcaggt 840 tcccttgtca gtacagtgtg gcacgatgtt acctatatta ggtggcggtg gctgcctgtg 900 cgtgttacct accttactgt ctgcctgggt actattatgt gttattgtat cgactagatc 960 caggctaggg cagccaatta gatacacaaa ctaaagtcac agtcagattc ttgcatatgt 1020 gttactaggt tccctcccct tcccccagtt aacctcaaca gcgttgctgt agtggtcctc 1080 wggtccgccc tagccccacc caacaagctc atgcaaggcg tcgccataag actcgtcagc 1140 attatctagc gatctcagag ttcgttgtga ccatgaggct agttaggtca accttaagcc 1200 ccgaggcgtg gctgaggggg cgttaggtcc acccgtaagc cctagccggg gngcanaagc 1260 gagtcgagct atgtgttggt tcactctgcc cccccccccc cccacacaca cacacacaaa 1320 cacacacact cgattcatac gtacgtgacc ttaccacngn gatnntcaca tncggnnctn 1380 gnngcaaccg tccaatttca ctcccttaca ccggctccaa gtctaaatag aagcactatg 1440 ttaggcaatg gkggtgttat aggttcgccc tcagcattgg cgagttatcg agttcaagtg 1500 ttcacggacn kcscctcccc ccacccccct tgamccccct gcacgtaagt gttaagggaa 1560 casaatacgt cagaaattta cgtagcttgg tgggccgcct cgtaaccgcc acaggtatcc 1620 catacgctca accgtgactg cgttaaatca attagcatgt caacgctcga tgatagttag 1680 ccttacctca caacacggaa gggtaggata cagcagtgtt cccctgcttc aggacgtgga 1740 aacacaagaa aatcgagtag tcaccaccat ccagcctccc cccccctcca gcccccatac 1800 agatgtgacg acgggccagg gcggccttaa gcccatgcga gtgagggcgg gccagggcgg 1860 cccttaagac catgcgagtg gggcgggcca gggcggccat taaccatcag agtgcgggcg 1920 ggcaagagcg gcaagcccat gcgagtgagg gcgggccagg gcggcctcta agcccatcag 1980 agtgcggacg ggcagggcgg ccattaagcc catgcgagtg agggcgggcc agggcggcca 2040 ctaagcccat gcgagtgagg gcgggcaagg cggccactaa gcccatgcga gtgagggcgg 2100 gccagggcgg cccctaagcc catgcgagtg agggcgggcc agggcggccc ttaagcccat 2160 gcgagtgagt gtgggccagg gcggccacta agcccatgcg agtgagggcg ggccagggcg 2220 gccattaagc ccatgcgagt gagggcggac ccggtcggcc ctttagccca tgcgagtgag 2280 ggcgggccag ggcggccatt aagcccatgc gagtgagggc gggccagggc ggccattaag 2340 cccatgcgag agattgcggg ccagggcggc cattaagccc atgcgagtga gggcaggacc 2400 agggcgcctt aaccatgcga gtgagggtgg gccagggcgg ccctaagccc atgcgagtga 2460 gggcgggcta gggcggccat taagcccatg cgagtgaggg cgggccaggg cggccattaa 2520 gcccatgcga gtgagggcgg gccagggcgg cccttaagcc catgcgagtg agggcgggcc 2580 agggcggcca ttnagcccat gcgagtgagg gcgggccagg gcggccacta agcccatgcg 2640 agkgagggcg ggccagggcg gcccttaagc ccatgcgaga gagkgcgtgc cagggcggcc 2700 cttaagccca tgcgagtgag gccgggccag ggcgaccact aagcccatgc gagtgagggc 2760 gggccagggc ggccctaagc ccatgcgagt gagggcgggc cagggcggcc attaagccca 2820 tgcgagtgag ggcgggccag ggcggccatt aagcccatgc gagtgaggcc gggccaggcg 2880 gccattaagc ccatgcgagt gagggcgggc cagggcggcc cttaagccca tgcgagtgag 2940 ggcggccagg gcggccctta agcccatgcg agtgagggck ggccagggcg gccmctaagc 3000 ccatgcgagt gagggcgggc cagggcggcc cttaagccca tgmgagtgag ggcgggccag 3060 ggcggccact aagctgttga ggaggaaggc cagggcggcc actaaccatc gagagagggc 3120 tgtgcagggc ggccctaagc aggaggccat gtgagtgagg gcgggccagg gcggccacta 3180 agcccatgcg agtgagggcg ggggcggcca ttaagcccat gcgagtgagg gcgggccagg 3240 gcggccatta agcccatgcg agtgagggcg ggccagggcg gccattaagc ccatgcgagt 3300 gagggcgggc cagggcggcc actaagccca tgcgagtgag ggcgggccag ggcggccatt 3360 aagcccatgc gagtgagggc gggccagggc ggccattaag cccatgcgag agagggcggg 3420 ccagggcggc cattaagccc atgcgagtga gggcgggcta gggcggccat taagcccatg 3480 cgagtgaggg cgggccaggg cggccattaa gcccatgcga gggagggcgg gccagggcgg 3540 ccattaagcc catgcgagtg agggcgggcc agggcggcca ttaagcccat gcgagtgagg 3600 gcgggccagg gcggccatta agccgatttg agggaggaca ggccagggcg gccwttaagc 3660 ccatgcgaga gagggttgtg ccagggcggc cattaagccc atgmgagtga gggcgggcca 3720 gggcggcctt aagccggagt gagggcgggc cagggcggcc attaagccca tgagagtgag 3780 ggcgggccag ggcggctcta agcccatgca agtgagtatg ggccaacgag gacgcccaga 3840 caaacgagga cgggccggtg cggcccctgc gcccaggcat gagagggtgg gccagcgcgg 3900 cctttacacg ttttttctca cggacgggca atcaaaacct cgcccaatct atcgcgaatg 3960 ggtaatcgag gcccttgccc attcaatccc gggcaggcaa aggaagtcat gcgcagatac 4020 taccgtgggc ggtaaaccga gtccttcagt ccaaaatatc gcgggcgggt aatcgagacc 4080 cgacgcccaa tcaatcgcgg gggtgcaatc gagacccgac gcctattcca tcgcgaacgg 4140 gttagcgagg cccactactc ctactatcgt gggtggataa gcaagcccct atgattactt 4200 tggtttggcg cttaacttgc cctggggaag ggctaaataa ggtcatgctg tgcactcggt 4260 gccgcactgg caagcacaat cgcggtttct cttccgccag ggagagcttt aggaagcaag 4320 aggggcgtta atgggactgc taataggcac tgctattagg gacagagaga tgaattgaga 4380 gtgaagtcgg agtgaacaat tggtcctcga gacttgcgtc acgtggagaa tgacggttga 4440 ttaccagctg aatcacccca ggggaatccc agcctcaaag gggctcttct cctatgaggt 4500 aaggggcacg gcggggacgt tgaagccctc tcgcgacgta aggtgcccgt attacgcaag 4560 ggttcgtgca tatgggtgtg aggcagtgta ataggcggct acacggatat cgaactcttt 4620 ctgtaatggt atatggttac aatacattca gagtacacgc atgagctacc ctatgaggca 4680 tgtgcctgca ctttaagcta ttattatttc ggaaaatttc accggtaggt gatcgggcat 4740 cgccggctgg taagcaaggg gtcttgtctg ctactcccca cttggcgtgt tcgggtatat 4800 gtagtgcccg gatacagagc ggcacattcc caggtttgga acgatttagt ccgtaggaca 4860 gctggttact caggcgctgg tagaagcgtg ctgttaggcc aatggccata catagtgctt 4920 acaccttgtt ctaccaagac ggcgaggcga ataagttttt ctcaagcggg cgtacggaat 4980 gtatggtgat ggtaaaccgg atgggtaggg cctggcagtt ggccacaggg caggtttgcg 5040 tgcctggttg atatgcatac ctgctggctt tttattttgc tgggctcccc gtggtgaccc 5100 gacctttggt cttcaagtgc ttgttctccg gtggtgcttg gttatgtttg gggtcaggag 5160 gtaccattcc ccggtcctca gtccctcctt ttcaagcacc tgtttgggcg gggagctgtg 5220 gcccggaggc ccggctcctc gggtgcgctt ggttaggagg tcaccaagct atccgatacc 5280 tgaccccaaa cttatcagac gatgagttta aatgtatgct acattagcat aatttagcat 5340 aagttaaaat cgaggatgac cgctggcgcc tgggcccatt tccattcaag ccgtggcacg 5400 tttgcactct ctcttgaatc cctgcaaatt catgactcag cacgggattc ggggatattt 5460 tgcccctccc accactccct tatgtggagc gtatctattg ggtaagtata ttccaccgaa 5520 aggtgtgaca ggtatccccc gggggggggg gcggggagct gtggcccgga ggcccggctc 5580 ctcgggtgcg cttggttagg aggtcaccaa gctatccgat acctgacccc aaacttatca 5640 gacgatgagt ttaa 5654 // ID DNA-5-8_NV repbase; DNA; NEM; 158 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-8_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-158 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-158 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-158 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 158 BP; 41 A; 43 C; 44 G; 30 T; 0 other; caggggcgta gccagggggg tggcccaggg ggcccggccc ccccttctag cagccaaaaa 60 tacagtaaat gtatgagaca ttatctaaaa tacaggagaa aatgccttga aagggccttt 120 tgggccccct cctgttaaaa atcctggcta cgccgctg 158 // ID DNA-AT-2_NV repbase; DNA; NEM; 261 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-AT-2_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW AATT target site; AT TSD; NVREP446; DNA-AT-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-261 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-261 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-261 RA Kapitonov V. and Jurka J.; RT "A family of DNA-AT-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 87-96% identical to the consensus. It was reported CC originally as the ucnlassified NVREP446 DNA transposon [1,2]. CC This tansposons contains >100-bp imperfect TIRs and it was CC inserted specifically into the AATT target sites generating the CC AT duplications. See also comments to DNA-AT-1_NV, which is 65% CC identical to DNA-AT-2_NV and shares with it the same structural CC hallmarks. XX SQ Sequence 261 BP; 83 A; 48 C; 51 G; 79 T; 0 other; agtccagttt cgaattcgaa aatgaccgct agacagatta attgagggcg cattttacag 60 tgttagcctc gacgtgaaga aaattattca taaattttca caagaaaacg aagtattcac 120 aagtacaatc attgtatgat tttcaggatc ggtagtttct cgttggaatt tgtgaataat 180 taacttcacg ccgaggctaa cactgtaaaa tgcgccctca ataatctgtc tagcggtcat 240 tttcgaattc gaaactggac t 261 // ID DIRS-41_NV repbase; DNA; NEM; 2609 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-41_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-41_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2609 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2609 RA Kapitonov V.V. and Jurka J.; RT "DIRS-41_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 438-438 (2007). XX DR [2] (Consensus) XX SQ Sequence 2609 BP; 676 A; 587 C; 504 G; 842 T; 0 other; aaccccatgc tgccaggtca tctacaacaa cctgttccaa caccaataaa tcgtgatcgt 60 ttagcgcatt tgcttgatgg gtacacccct tcaattgcag cttatttgac aacaggtttt 120 actgagggtt ttaagcttca tttcgaggct gaataggtct ctcttgcggc caacaacttg 180 ttatccgctt tgaattaccc taaagtagtc cgttcgaaat tgcgcaagga actgaaggct 240 cataggctcg ccggaccatt tttcactcct ccattcgatt cattttaggt gtcgccccta 300 ggcgtggtcc ccaaaatggt gccaggcgag tttcggatga ttcaccacct atcgttccct 360 aaaggttcat ctattaacga tggcattttg ccagaaaatt cctcagtcaa ctacgcaact 420 atacaggatg taattaggtc tgtgatgtcg gttgggaaaa actgttacct tgccaaaacc 480 gacattaaaa atgctttccg tataattcct gtacaccctg acggctactc cattttaggc 540 atttgtttgg attaccttta ctattacgat aaatgcttgc ctatgggctg ttctagttcc 600 tgcaaaattt ttgaaacttt cagcactgca attgaatggg ttgcccgtca caaatgtagt 660 attccaaaca ttttacacct attagacgat ttcttaattg ttgcccctac tgaatcactt 720 tgccaaaagc aattacaaat tttcattgaa gtttgcaatt atctgggtat tcctattgca 780 catgacaaaa cttttgggcc ttcgcaagtt ttatcatttg ctggtattga actagatact 840 tgtctgatgg aagctaggct accacccgaa aagattaata agtgtttacg ttttttatct 900 aatttcctta ggaggaaaaa ggttacttta aaggaaaccc agactttaat tggccttttg 960 aattttgctt gttctgtaat actaccggga cgggccttcc ctcgtcgcct tattgattta 1020 accgctggca tccgtgctca gcagcattct attaggctta cgcaatcagt taaggaggat 1080 ttacgagtct ggtaaacctt tttctccgaa tacaattgca aatctttctt tcttgaagaa 1140 gtatgggcca acttccacaa actaagtcta tatactgatg catcccttgg ttttggagca 1200 attttcggca atgaatggtg cctgtggcag ttggcctgac aattgggttg gaaaaaatat 1260 tgctatctta gaattttatc caatagttct tagcctatat ttatggggta aacagctgca 1320 aaacaaatgc atcttattct tcactgataa cgaggcacta gttcacgtga taaacaagca 1380 atcctgccgg gataagtcgc tgatgttttt tgttcgcaag ttagttgcag tatgtttaag 1440 gcggaatatc acgttcagag ctaagcacat accgggcatt aaaaactctt tggctgacgc 1500 tttgtctcgt caacaggttt ccaccttcaa gcagttggca caggctccat gcacccatgc 1560 cctaccacta tccctgtaca tctgttacca caaaattggt taatatagtg tccaagttga 1620 taaaatctag cttacagccc tcctctgttc ccacatatag gagggcatgg aacctttttc 1680 acttgttttt gagttccatt tttcaacatg cagtcgttac actgcccatc tccccttcta 1740 ggatggctct tttcattgct tatctttacg acaagaatta tgcaccctct acagtgaaca 1800 cttatgtttc agcaattggc tacacccaca agctgtatca acttcctgat ccatccaaag 1860 cctttttttg tgttacaact attacgcggt tacaataagg ttgtttttcg tatggatgct 1920 agactgccaa ttactttgtc aatattacac aaattgtttt ctgcttcccc tcacgtttgt 1980 agctgtcctt atcaaactgc taggtttaag gcgatgtgtg ctttggcttt cttcgccttt 2040 ttacgtgtgg gggaaattgc ttggacttca aacaactgtg tttctgtctt gcaacttcac 2100 aaccttgtta cgctggttga tactgcgaag agttctgtat atggtttaaa acttacattg 2160 tgggatttta aacatcgcta taaccaaacc ccattttcca tcactatcag tcgtcaacag 2220 catccttgtc cggttgatat tatcttggat tacttgagaa tgagaggctc tcggcctggg 2280 ccattgttta tcaccatgtc gggtggaaca gtatcaaggg ataatttttg caattctcta 2340 gcatctgttt caaacttttg cggcttagat tcctccaggt acaaagggca tagcttccgc 2400 ataggcgctg catcacatgc agcagagaaa ggtatatcag agacacaaat acgcctgcta 2460 gggcgatgga aatctaatgc tttccttaaa tatatccgag ttccaagtct tgcaacttag 2520 cctgcattca gtaggggcca caatgtatat tcttggaata gcctgcaagg gcagtattcc 2580 cgttgagatt catgagcata gcaacacta 2609 // ID DNA-9-31_NV repbase; DNA; NEM; 586 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-31_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP141; DNA-9-31_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-586 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-586 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-586 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-30_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 86-96% identical to the consensus. It was reported CC originally as the unclassified NVREP141 transposable element CC [1,2]. XX SQ Sequence 586 BP; 169 A; 121 C; 118 G; 178 T; 0 other; tagactttct caaagtccgc tggccagctt tttagaaatt ggcttctgct gtacaacgga 60 cttttctagt tcgcttcccg ccaattttta ccgacctaaa tttaggtcgg tgacgtgtct 120 cataaacatc caatcggagc gcgagaaaga tgccgacgcc acagtaaacg tcatggtcgc 180 tattttgttg ctttcagaaa tcttgtttct tgcagctctt tcgttctctt ttaagatatc 240 aaattcggat taacatcaat agtgtaaaga caactaaatt ttcaatcttt cctggtgact 300 ggacagaaaa gaaatagaga ctggaaagat tttgaagcaa aaacgttttc aagtttcgtt 360 attttcatgc gcgcgctaaa gaatagcgtc attttaaacg agcgcgcgca tatattgtat 420 ttatttttcg cggcaaaaat atgcaaatta aaatcgaaat cgtgcaaacg gaacaagtcg 480 tcctctccgc gcgcctgatt ttttttactg attattgagg aaaataccca tcagatcgcg 540 cgctcctatt agggaaaatc aaagagggcg acttggggca agtcta 586 // ID TE-23_NV repbase; DNA; NEM; 1433 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-23_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP224; TE-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1433 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1433 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1433 RA Kapitonov V. and Jurka J.; RT "A family of TE-23_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1433 BP; 491 A; 404 C; 254 G; 280 T; 4 other; aaccggtagt ttctcggtgt tacagagcac caagatggcg tccatcacct ctagctaaag 60 caccaaatcg gtgttctcag acaaattctc aaagcaccac acgaatcact actctcgccg 120 tttgtcgcca gattgcacca acatggagtc ttgttttgtc agctttgtcg gtactgacaa 180 atcgacaaac gcgtttaaag gcacataacc accgcacaga gcactgacaa atcgacactg 240 acaaattttg tcgacctgtc gactgacaaa tcgacaaacg cgtttcaagg cacataacca 300 ccgcacagag cactgacaaa tcgacactga caaattttgt cgacctgtcg actgacaaat 360 cgacaaacgc gtttaaaggc atataaccac cgcacagagc actgacaaat caacactgac 420 aaattttgtc gacctgtcga ctgacaaatc gacaaacgcg tttaaaggca tataaccacc 480 gcacagagca ctgacaaatc gmcactgaca aattttgtcg acctgtcgac tgacaaatcg 540 acaaacgcgt ttaaaggcat ataaccaccg cacagagcac tgacaaatcg acactgacaa 600 attttgtcga cctgtcgact gacaaatcga caaacgcgtt taaaggcata taaccaccgc 660 acagagcact gacaaatcaa cactgacaaa ttttgtcgac ctgtcgactg acaaatcgac 720 aaacgcgttt cacggcacat aaccaccgca cagagcactg acaaatcaac actgacaaat 780 tttgtcgacc tgtcgactga caaatcgaca aacgcgttta aaggcatata accaccgcac 840 agagcactga caaatcgcca ctgacaaatt ttgtcgacct gtcgactgac aaatcgacaa 900 acgcgtttaa aggcatataa ccaccgcaca gagsactgac aaatcgccac tgacaaattt 960 tgtcgacctg tcgactgaca aatcgacaaa cgcgtttcaa ggcacataas caccgcacag 1020 agcactgaca aatcaacact gacaaatttt gtcgacctgt cgactgacaa atcgacaaac 1080 gcgtttaaag gcacataacc accgcacaga gcactgacaa atcgccactg acaaattttg 1140 tcgacctgtc gactgacaaa tcgacaaacg cgtttaaagg catataacca ccgcacagag 1200 cactgacaaa tcgccactga caaattttgt cgacctgtcg actgacaaat cgacaaacgc 1260 gtttcamggc atataaccac cgcacagagc actgacaaat caccactgac aaattttgtc 1320 gacctgtcga ctgacaaatc gacaaaccgt ttcacggcac ataaccaccg ccagagcact 1380 gacaaatcaa actgacaaat ttttcgacct gtcgactgac aaatcgacaa acg 1433 // ID Harbinger-1N1_NV repbase; DNA; NEM; 744 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger-1_NV; Harbinger-1N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-744 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 157-157 (2007). XX DR [1] (Consensus) XX CC Harbinger-1N1_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons derived from the autonomous CC Harbinger-1_NV; they were active in the Nematostella vectensis CC genome in a last few million years. The Harbinger-1_NV transposon CC is characterized by 25-bp terminal inverted repeats and 3-bp CC target site duplications. XX SQ Sequence 744 BP; 209 A; 152 C; 168 G; 215 T; 0 other; gggccggttc ctgaaaagcc gattagcgct aacccagggt taaattaacc ctaacccacg 60 attaaatttt tacccccaga ttagttctgt tcccgaaacg ctggttagcg ctaactctgg 120 gtcagtttgg aggtaaaatc taaccctgct cgcgaggtgg gttaactcgc taacccacgg 180 tttagttggc gtaacacagg cctcccaaac tttgtagtag aactaaagct tcataaaata 240 aagttgtcga caaaaaagac gttacacaaa aacaatgtag ggatcaaata tcctaacatt 300 tcgctttatt atgtgacctt cgttgcgatg ctgactcgaa aattgtgctg ggacagacag 360 aaagttacat gaaatttata cttgaaatga atctgtctcg ctagtgtcac gcaccaactc 420 gaatcctgca aatgacactt ttttggcaat gaaatggagg taattacagg tgatgtagag 480 gtgttttggg gcttttctgc gaaaataaaa tcaccaaagg taaatttgag ttgctttctg 540 ttgatctact gggtatcctg tgtgaatttt actcctcaaa ccagtttttc actcgtttaa 600 tccagggtta gtaaatcggg ggattacttg gctttcggga acggtgagtt atccgtaggt 660 tagctaacct acgattagcg aattttaacc cgggattagg cgctgatcga gggttaagtt 720 aatcggcctt tcaggaaccg gccc 744 // ID Penelope-3_NV repbase; DNA; NEM; 1387 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-3_NV autonomous Non-LTR DE Retrotransposon - incomplete consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-3_NV. XX NM Penelope-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1387 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1387 RA Kapitonov V.V. and Jurka J.; RT "Penelope-3_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 633-633 (2007). XX DR [2] (Consensus) XX CC This is only a 3' terminal part of Penelope-3_NV. XX FH Key Location/Qualifiers FT CDS 1..1098 FT /product="Penelope-3_NV_1p" FT /note="GIY-YIG nuclease." FT /translation="GLAIMDETPRNIERAKKNICKVFADNGLKVTIDTNKK FT IFNSLDVTLDLNTGKFKPYSKPENTPLYVHSKSNHPPSIIRNIPESINRRL FT SEISYDENTFNDAAPQYQEALRKSGYEYELKFQPTPQRTSTQRQSRNRQRD FT VVWFNPPYSKNVSTNIGREFLKLADKCFPTDHKLRKIFNRNMLKVSYSCMP FT NVKHIIDGHNKTILTKNELQQTETEKKCNCRKKDKCPLNGECLTQEIVYQA FT IVKTEEKTETYIGLTANTFKTRLGNHKQSFRNVNRKNDTELSKYVCELKEK FT REDYFIDWKVLARAKAYSNKTKRCSLCTTEKHLIITKPNMATLNRRNELVS FT TCRHRRKYILRFNDSRTGNVARA" XX SQ Sequence 1387 BP; 526 A; 258 C; 286 G; 317 T; 0 other; ggactggcaa taatggatga aacaccaagg aatattgaaa gagcgaaaaa gaatatatgc 60 aaggtctttg cggataatgg cctaaaagta acaattgaca ccaataagaa gatcttcaat 120 tccttagatg taactttaga tttgaacacc gggaaattca agccatattc gaaaccagaa 180 aatacacctt tatatgtgca cagcaagtct aatcatccgc caagcatcat aagaaacata 240 ccggagtcaa tcaacaggag actgtcggag atctcatatg acgagaacac attcaatgat 300 gctgcaccgc aataccaaga ggcactaagg aagagcggtt acgaatatga gctaaaattc 360 cagccaacgc cacaaagaac aagcacgcaa aggcaaagtc gcaatcgaca aagggacgtt 420 gtatggttca acccgcctta tagcaaaaat gtaagcacta acataggtag ggagtttctc 480 aagttagcag ataagtgttt ccctaccgac cacaagctta ggaagatatt taatagaaat 540 atgcttaagg taagttatag ctgcatgcct aatgtaaaac atataataga cgggcacaat 600 aagaccatct tgacgaagaa cgagctgcag cagacagaaa cggagaaaaa gtgcaactgt 660 aggaaaaaag ataagtgccc attaaatggc gagtgcttaa cgcaagaaat agtttatcaa 720 gctattgtaa aaacagagga aaaaaccgaa acctacatag gcttaactgc aaacacgttc 780 aaaactaggt tgggaaacca taagcagtca tttagaaatg taaatagaaa gaacgacacg 840 gagcttagca aatatgtgtg tgaactcaaa gagaagcgag aggattattt catagattgg 900 aaagtgctag ccagagcaaa ggcatactca aacaaaacta aaagatgcag tttgtgcaca 960 acggaaaagc accttatcat aactaaacca aatatggcaa cactgaatag gagaaacgag 1020 cttgtctcga catgtaggca caggcgcaaa tatattctta ggtttaacga ttctagaaca 1080 ggcaatgtag cgcgcgcttg acaatcttat aacgcgcgca gtttgtaacg gccatattat 1140 atgttaaatt ttgcatctca cgaaaccata cataatttcg tagacgtacg tcagtgttac 1200 agttgtaaaa aggtttaact gaggagtgga acaaccttac ggttggtcca cgaaacagaa 1260 ctgtattaaa ctaatttacc tggatgaact gagtcgttca ttactgatct acataagctc 1320 ctgcaaagtc gagcactatt ttggctcaag gtgaaaactt ctactggatt atatatatat 1380 atatata 1387 // ID DNA-9-18_NV repbase; DNA; NEM; 648 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-18_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP20; DNA-9-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-648 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-648 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-648 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-18_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are up to 95% identical to their consensus sequence. CC Originally, it was reported as the NVREP20 unclassified DNA CC transposon [1,2]. XX SQ Sequence 648 BP; 186 A; 142 C; 140 G; 180 T; 0 other; cgctgtgtct acttgcacgg cttccggtaa aggaggaaaa aaaactagct gcacggctgt 60 ctcccatttt ctcgattttt agcctaaata acaagtttct ggctttgaaa cacttccacg 120 attattaaga acagccaaga gatgtttttt agcttgaaaa gctgtgcatt gagtgacccg 180 caaatgctcg gcacagtatg aacgaagcgt ggagttcgac acctcgtttt cgccataaca 240 gctgtgcaag gagaaaaaaa gtagatgcac ttcccttttt tctttttgcc attaagccaa 300 aatgaaaagt tttgacttta aaaacctccc accgttattt agaaccgtca aacgatggct 360 tcgagcttga aaaaattcgc aaaaggcgac atgcgagtgc tcggcacata atgaacgatg 420 catgaaatgt cgaactccac gcttcgttca tactttgccg agcatttgcg ggccgcttgt 480 tgcatagctt ttcaggctaa aaatcgtcgc ttggctgttc taaataatcg tggaagtgtt 540 ttaaagccag aaacttgtta tttaggctaa aaatcgagaa aactggagac agccgtgcag 600 ctagtttttt ttcctccttt accggaagcc gtgcaagtag acacagcg 648 // ID DIRS-44_NV repbase; DNA; NEM; 1958 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-44_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-44_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1958 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1958 RA Kapitonov V.V. and Jurka J.; RT "DIRS-44_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 441-441 (2007). XX DR [2] (Consensus) XX SQ Sequence 1958 BP; 483 A; 404 C; 410 G; 661 T; 0 other; tttcgtcttc tcaacatcaa gtggggtcct tacaccattg acagattcgc tacccactac 60 aatgcacagc ttccccattt caattctaaa tttgctgctc ccggttcatg tggagtagat 120 gcttttacaa aggaatggtc tggtgaaaac aactggattt gtcccccagt tcagtccatc 180 agagcactgt cttcgtccca gggttatggt actcttatta tccctgaatg gccctcgagc 240 tacttttggt catttttgca ttctagccct accctatttt agtcctttgt tttggagtct 300 tttagacttc cgcgcattcc tgacttaatt ctgcagggtc ccggacagag tcagatttac 360 aagtcgcacc cttctgtgtt ctctggcttc cctatttttt tcatgctagc tctgtgcgta 420 gattttaggt aagaaatgtt ttagttattt ttgcgtatga caagaggtta gcacttgaat 480 tgtttttttg catatgcaat catatttaca agatgcttga ggttgagcca tccctgcgtt 540 atgcgagagt ggcatgtatc catgttatgt tattgtttgc ttgtgatcag acgctcaagt 600 ttaaagcttg ctcacagttt gcgagggtat tcgtcatttg gcaagacgct ctagtttgaa 660 gcgtgctcgc cttttgcaag ggtattcacc atttggcaaa acattctagt ttaaagtgtg 720 ctcgcgtttt gcgagggtat tcgccatttg gcaagatgct ctagtttgaa gcatgcttgt 780 ttttcacgta attcgccttt ggagagtagt tatatttgaa ttcgttttga atcatcttta 840 tttttaatca ttctgtttag gattgttttg gtatttatta taggggcgta taaatattgt 900 aatgagattc agcatttcca ccaatgacag cttacttgtg ttgttttcag gtctacctga 960 agaagggtat ctgaaaagag gccttacatt tagatcaatc atttttttat ctattacgcc 1020 acaactgaaa gatctacagt tgtcttctgg agcaacctta actgtgaaca agtacaaatc 1080 tggatgggat tgttggatag ctagggctgg tcaaagtatg ttggtctcac ctaccggcca 1140 accctttgca tgttgctctc tacctgacag atttgtgtcg gagtgctagc ggtaacggcg 1200 tttcttccat cgagtctgct ttctatagca taagatgggg ccaccacatg gctgggatag 1260 acagtcctac tgaccacact ttcctcaagt ctacactgga aggagcaaag agaaagcttg 1320 cccgccctat cagtccaaag gagccactta ctcctgagca agtgcacagc attgccaatc 1380 attgcataag tagcactagt ctagctcaca tcagatttct ttttgtagtt cttgttggtt 1440 atgccggttt tttgcgcatc agcgagattc taaacttaag acccaaagac atcactgttt 1500 tcgctgattg catgtcattg actatttcaa agagaaagaa cgatcaatat agagaaggcc 1560 atacttctat atactagtta ggattagtaa ttcaacttgc cctgtgtcag cttttgagcg 1620 acttagcaag cttttaccat cagattcctc tgatgacgct tctatattga agcgcattgt 1680 tagatctaaa acaggtgaga gttttcactg ttcaaaatca atatcctact cttgtatgag 1740 ggtagaattt cagaaataca tcgccccttt tgttgatgat gtcactaaat attgtacgca 1800 tagtatacag tcaggagctg cttctaatcc agcatgtcgg aatgttagta gtgacttgtt 1860 agatcttcat gctggctggc actcttcagg tgccaagtac attaaattta gcaaataaga 1920 tcgattgggg ttgtcaaaag cgatctcact tcagtgat 1958 // ID LTR-5_NV repbase; DNA; NEM; 310 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-310 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-310 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-310 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Copies are flanked by 5-bp TSDs. XX SQ Sequence 310 BP; 102 A; 58 C; 50 G; 99 T; 1 other; tgtatcattc taaacgatga attttgttaa tttattcgta tcaatttttg acgtcataac 60 gtgttaatta agaacctaga acatttgaaa ctacgactga ckcgaacaag attacaggag 120 ccagcgggta aatctctgtt aaaaatcctg gctacgccgc tgtgaatctc aaattgttgt 180 aacactaaat ccatttgata atgctgtata tgattatttc agatttcaaa cctctcctaa 240 tatcaaactc cagttgtaac tacaataaat ggtttgaacc aatggcgaag tcgttcagtc 300 agtcagtaca 310 // ID Copia-1-LTR_NV repbase; DNA; NEM; 152 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Copia-1_NV autonomous LTR DE Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1-I_NV; KW Copia-1-LTR_NV; Copia-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-152 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-152 RA Kapitonov V.V. and Jurka J.; RT "Copia-1_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 379-379 (2007). XX DR [2] (Consensus) XX SQ Sequence 152 BP; 44 A; 23 C; 34 G; 51 T; 0 other; tgttgagtta tgtttataat gacgtaacct aatgttgcat tctgggtaat cgttaccctc 60 gtggtctgta tgatccgcca tgttgtacgc gttgtatgtt tattgaagag aataaaagaa 120 gtaaagacac tcataacgag atgagttcta ca 152 // ID DNA-2-2_NV repbase; DNA; NEM; 273 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-2-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-2-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-273 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-273 RA Kapitonov V. and Jurka J.; RT "DNA-2-2_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 387-387 (2008). XX DR [2] (Consensus) XX CC DNA-2-2_NV elements are flanked by the TA target site CC duplications. XX SQ Sequence 273 BP; 93 A; 46 C; 60 G; 74 T; 0 other; caatcggcga attaaatggt tgataaaatg atttcttaat cagttatata ctcaatatgc 60 tattttttta aatgaaaaca caaaaattcc cccctccccc ctattcaatg ttgaggacta 120 aggtcgcagg tgtcagacta caacattgaa aggggggaag gggttcctag gaaagggggg 180 gtggggtaca aaggagttat actagaaata tgacgtgaac acatggaaag cgttttccac 240 tgaaaaaatt atcaacattt aattcgccga ttg 273 // ID Harbinger-N9_NV repbase; DNA; NEM; 717 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP88; Harbinger-N9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-717 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 168-168 (2007). XX DR [1] (Consensus) XX CC Harbinger-N9_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N9_NV CC transposon is characterized by 28-bp TIRs and CWG target site CC duplications. XX SQ Sequence 717 BP; 208 A; 155 C; 148 G; 206 T; 0 other; gggccggttg cacaaagcct ggataagtta tccgccggat aggcgctaac cgccggataa 60 aatccctatc cagcgaatag ttatccggcg gataaaatag cgttgcacaa agcgtggata 120 gaaggctgga taactatccg ctgaatagcc atcatttacc actaaatggc ttcccgtttc 180 catggtaaat atgcaaagcg cgcgctgttt ttccttcaaa caaaatggcg accgttgaaa 240 aagctactaa aagtgccaga aaacaaacag tttatcgagg caaagtgcat gtaaatcatg 300 gaatgatcac aggggatagt gtttagcttc ttcctgtctt tgggagtcac atttctcgac 360 agaacggaca atatagtttg attccagtcc tgccaaagct gcatgtaagt tcgtagttca 420 ttgtaaattt accaacagta aaattcgtcg tttgcatgtg tttcaacttt cactgcgtct 480 aaaattaatc taaattctga caaaaaattt tgaaagcaag acgccatttt gttttttctt 540 cacatttatt cggtggataa gattttatcc gacctctatc atccggataa ctttaaccgc 600 tggataactt ttattcgggc tttgtgcaac cgaatcacgc cactcggata acttttatcc 660 gctggataag gatttaaccg gtggataaga cttatccagg ctttgtgcaa ccggccc 717 // ID Gypsy-10-I_NV repbase; DNA; NEM; 3961 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-10_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10-I_NV; KW Gypsy-10-LTR_NV; Gypsy-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3961 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3961 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-10_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 451-451 (2007). XX DR [2] (Consensus) XX SQ Sequence 3961 BP; 1315 A; 791 C; 937 G; 915 T; 3 other; tggcggcagc ggcgagattc ctgaatccac cggagttctt cgacttcacc aagcctttaa 60 agtggccgga atggaagcag aagttcgagc gatacgcgat tgctacgaaa cttacgaagg 120 aagaagggga aatacaggtg agcacgctcg tttattcaat gggaattgaa gcggaaaaca 180 ttctcaagtc ctttgatttt gggtcagaag ctgacaagaa agacttagag aaagtcctaa 240 agaaatatga tgattatttt attccaaaga gaaatgttat tcatgagcga gcgaaattcc 300 atcagagatc tcaaataccg ggagaatcgg cagaatcatt cataagaaac ctgtacgaat 360 tagctgaata ttgtgaattt ggggatctaa aggacgagca aattagagat agaattgtca 420 ttggaactct agataaagaa ctatctaaga agttacaaat gaaatcagat ttaaacctgg 480 attcagcaat acaaatggct cgacaatccg agttgatcaa atctcaaatt tcagaccaaa 540 gtccaaacaa attgctcgaa gaagttcacc gtaaaccaca gggttcccgc acgcagggta 600 gaaaccggaa gttcaaagaa caaaacaagg ggcaagraaa aamaraacag agctaagaaa 660 tgcgacaggt gcgcccgcac acacgctaat aatgatgttt gtcccgctaa aggaaaaaag 720 tgcaacaagt gtaataaata caatcatttt gcggcagctt gtcactcgcc acctatgaat 780 gctaatgagg ttacacaacc acagggagac cagcgatttt tcttaggaga tgtagaatcg 840 gacggaacaa agaatccatg gacagttgat ttgttaatca accagaaacc tgttaatttc 900 aagattgaca cgggggctga tattacagtt ttgtcggaat cgacttataa tcatctccca 960 aaccctccaa agctagagcc agagcgcgct gatatttcaa gtccaggagg aaaactgatc 1020 tgtaaaggac aatttctgac tgaagctaag ctaaatgggg aggcatacca ggttaagatg 1080 tttgttattg caggagagca agtgaacaat ttactaggac gggacactgc ttgtaaaatg 1140 ggtctagtac agagagttgg agaagttttg tttgacgtat tcggagatat tggtcttctt 1200 aattgtgcgc cagtgaaaat cgagttacga gagggtgcac aaccgtatca cgtcaatacc 1260 gccagacaaa tcccgttccc actcttacct aaagtcgaga gtgagctgga tagaatgaag 1320 cgcgaaggta taattgagga aattacagag cctactgatt ggtgcgcgcc tatgattcca 1380 gtcgcaaaga gtaatgagaa ggtcaggatt tgtgttgatc tgagacgact aaatgaatct 1440 gtgaagcgag agagatatgt cctgccaacc cttgatgatg ttgcgcccaa gatggttgga 1500 gcgaccttgt tttcaaagct cgacgcgtca agtggatttt ggcaaatacc cctcactgat 1560 gaaagcgcaa agcttacgac cttcatcaca ccacaaggca gattttgttt ccgaagattg 1620 ccgtttggta taacctctgc acccgagata ttccagcgat gcatgacaga tttgttgaag 1680 aaccaagaag gagcatacgc gataatggat gacgtcatta tcgtcgggaa aaccccggaa 1740 gaacacgaca aaagattacg cgagactttg aagatcattg aagaatcggg tttgaaactg 1800 aacaaagaaa agtgtgagtt ccgaaagaaa gaaatctctt atttcggaca tgtgattaac 1860 cagcaaggca ttagtccaaa ccccgagaaa gtgagagcta tccaagcact cgcagcgcca 1920 gagaatgtca gtgagttacg ccaagtgaca ggcatgatta actaccttgg caaattccta 1980 cccaacttat ccacagtcat ggctccaatg aacgacttgc ttaagtcaga tacagtctgg 2040 cagtggaccg aagtacaaca agaagccttt gataaggtca aagagatggt atccacaacg 2100 ccagttctaa cattttacga tccaaacaag gcgatcactg ttagcgcaga cgctagtagc 2160 tacggaatcg ggggagttct acttcaggaa gacaaaggga cattgcgtcc agtagcattc 2220 tgctcgcgaa cactaacacc agcagagaac agatactcgc agatcgagaa ggaatgtttg 2280 gcatccgtgt ggacttgtga gagattttca cgttatctga ttggtctaga atctttcaca 2340 cttcttacag atcacaaacc gctagtaccg ctgattaact gtaaggattt ggataagaca 2400 cccgtgagat gtcaacgcct gctaatgcgc ctgatgaggt ttaatgcgaa agcagtgcac 2460 atacctggta aggaacttat aatagcagac acactgagca gaaacccact taagtcaaat 2520 gtgtcagaca gcgaagatgt taaagcatac gtagactcag tagtgaacac tagaattgcg 2580 aaagataaac ttcgagagat agagcaagaa actcaggaag attccaagct taagttagta 2640 ttggaatacg ttagaaatgg atggccgatg catccaaaac aggttcccga agaaatacga 2700 gagtattttg gaattcgtaa cgaactatca gaagtcaatg gcaagctcgt gtttggaagt 2760 cgtattgtga tcccagaatc gatgcgcggt tacgtcttgg acagaatcca tgatggacac 2820 cagggtgtaa caaagtgccg cgagagagca cgtctctccg tctggtggcc tggtttaagc 2880 agaagtatcg cacagaaggt tgcgtcatgt gaattctgtt tagtcaacca gcctacgcag 2940 aggaaggaac ctctaagaac cacaccccta ccagatagac catggcagat gattgcagca 3000 gatcttgcaa tgtcggatgg tcaagattat cttatcgtca cagactacta ttcaaggtat 3060 attgaaatcg cacacactac aaagtcacct catactacct ccaaacgagt gattggtaaa 3120 cttaagaaca tgtttgcgag atggggaata cccgaactag taaagagtga tgggggacct 3180 cagttcacat ctaaggagtt cgaggagttc agtaaggagt atggttttac gcacgatcca 3240 tcgaccccac atttccctca aggaaatggt gaagcggaaa gtggagtacg aattgcgaag 3300 aggattctga aacaagagga tcctttctta gcattgatga cttatagagc aacaccgaca 3360 caagccacaa aggaaagtcc ttgtaagctt ataatgggtc gcgaaatacg cacaagattg 3420 cctacactaa ctgataattt acatccaaag acgccaaatc acaaagaggt gagaaaagcc 3480 gacgagaaaa ccaagcagag atacaataag tcattcgatg atcgtcacgg cgttagatca 3540 ctacctgtac tcgaagaagg agatcaagta agagtcaaac ttgataatga aaaaggatgg 3600 aaaacgcaag gtccaattgt tgcagcagac actcgtaaca gatcgtacat cgtagaaacg 3660 tctaactcaa gtcttctgaa gcgaaatcgt cgtcatttac gtccttcagc tgggatagat 3720 caagatacta ttccctacga gctaccggaa gaagaggatg tcaagagcga tgacactcaa 3780 gatgttgatg actctacagg agctgagcag tttgatgatg ctaatactag ggagctcaaa 3840 acccgtagtg gtagaactgt taaaaaacca atgagataca ttgaagagtt ctatggacta 3900 atattaagac tgtaacgttc atattacgtt tgataagcag tatctccttt taggggggag 3960 a 3961 // ID DNA-X-11_NV repbase; DNA; NEM; 1290 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-X-11_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP298; KW DNA-X-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1290 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1290 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1290 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-11_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Target size duplications are not visible. XX SQ Sequence 1290 BP; 368 A; 271 C; 291 G; 357 T; 3 other; ttcacccttt cggcgctgga aagtcacgtg cgttttacgg ggtaaagcca acaaatcgta 60 aacaacccgc gaaagttcgg acaagtgaag aagcgtgtgc ttcgtacgaa caaawtggtg 120 acaacaaagc attgcctcat ggcacctgta gaaatgaatc tagattcccg cagttatagg 180 agagaaatgg caatgggggc cctgtactat tcttccattt tkccaggaga gaaaagaaaa 240 acagaaagat agaaagaatg aataaagcgg tgcaaacacg gagattcatt caagtgtggc 300 aaggatattt atatttgcag cttgcatttt gtcggcgaaa atggcaccac agaagatgat 360 cctgatccta tacctgcaga tgtcggtaaa gggagggtat ttttggttta attagttccc 420 gaaggcaaca cgttattttc ataggttgaa aaacgtttaa agcgaaaggc gtgtttgagc 480 gtaggacaga gagaatttgc cttcacaaaa cacaaaacag cagcgaaaac cctgatgaca 540 ctcattgcca gacgagttaa aaacatgcag cggctagggc attattagat ttcaggtcgt 600 cggtggttga agatcgcgac gattttcttt cttcccgccg aaaacgagtt gcccgaactg 660 ctggatgatg tgttttccga gtggagaaaa ctgtccttcc gcacttgaat gagccttgaa 720 tgagatcttc aaccactgat tacctctaat ctattaaggc tgcattttct tgttcagatt 780 tatccgaatg gcgatgaagt cggttttcgc tgctgttttg tgaaggcaaa ttcttctgtc 840 ctacgctaaa agacgccttt cgcttgaaat tttgttcgtt caacctatga aaataacact 900 agtgttagcc gtcgggaact aaattaaacc aaaaataaat aacttaccct tccttgactg 960 acatctgcag gtataggatc aggatcatct tctgtggtgc cattttcgcc gacaaaatac 1020 aagctgcaaa tgaacttacc ttgccaccct tctgtgtttc ttttctcctg gaaatggaag 1080 aatagtacag ggtccccatt gccattgttc ttcataactg cgggaatcta gaatcatttc 1140 tacaggtgcc atgagacaat gctttgctgt cccawtttgt tcgtacgaag catacgcttc 1200 ttacttgtcc gaactttcgc gggttgttta cgatttgttg gactttgacc ccgcaaaacg 1260 cacgtgactt ttcagcgccg aaagggtgaa 1290 // ID Kolobok-N26_NV repbase; DNA; NEM; 1061 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N26_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP332; Kolobok-N26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1061 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1061 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1061 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N26_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1061 BP; 288 A; 201 C; 238 G; 334 T; 0 other; aggggcagta tgacgaggtt cttaaaatac gtcctctcgc gcggaaatgt aaagattaag 60 cgttcaacta tcaggttcca aacgctccaa gtgaaatatc gagttgaagt atgttttgtt 120 taaacctgaa atacagcaat ttttggccgc cattattcag ttggaatcga acgatcgaac 180 gctgtgatgt cacttgtccc caaaatcaag ctatgggatg gaatgcctcg ctctgagtcg 240 caaaaaaatc acagcacgca cagagagtgg ggtgaggatt tagccagaga attcagcgca 300 atacgacaat tattcttgat tctaagtttt ttggattaaa atgatataat atttttggaa 360 agtttgtcat ggctagtgta gaggagtctg ccgccatttt gtttatcgag tcatctcttc 420 ttgttgtgtg ttgtacggtt acttatcttt gttttgtgac gctcattcga taattgaaca 480 aagagcaaga actagaattg agttctttgt ttgaaatagc accattgatt caaatgcagc 540 atggatccga tcgaaaactc accttgtaga ggtggacttg ttgattcctt tcgtgttgaa 600 attacgcacg tggtcggcag atgatcgctt tttatagcag acgctcgtaa ttcaaggcag 660 ttttcttcgg ctaccagggg tttagaatgc gaaaggtttc ttctggatct cggtcaggta 720 atcaaattta aaaacaggcc cgtctttctt cccataaccg ctccatattg atgtttggag 780 gccagacacc aagtatacac gtctatttgc caatggttct gaatgtaatg agccgacttg 840 ttggggacaa gtgacgtcat aagtgctctc caaatcaagc tagctcaagc aatggccgcc 900 gattttcgaa cgttttatac gggctttatt gtcacttttt acaactttgc tgttggagtt 960 ttgagctaat tttttcacca agagtatatc aaacgatgct ctttctaatg aatgtagcga 1020 gaaggcgtaa tattgatgtg aatttacgtc atacggcccc t 1061 // ID DNA-7-4_NV repbase; DNA; NEM; 983 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-4_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-983 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-983 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-983 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 983 BP; 284 A; 208 C; 207 G; 284 T; 0 other; cacaggctta ccaacctctc agtcagtctc cagtcaatcc cagtaactag ctcgaatatt 60 ttcacgattg atcacctcct gtaattgtcc tataattgtc ttatatccta gaataaaggt 120 cacaataaac tctcattgct ttgtgatgtg tatttattca gaataagcgg tatttctaac 180 gtttgagcag ttgagggatt ccgcgttact atatacctat aaaaagaagt aaaggcaggc 240 aggctttgga gacatgcgat cagatcaagc ggccagaatt ggagtacgag taaaatctcg 300 aaaatcaacc accacagtgc ggtagaatat aaatatctcc atgtccccag cgattttcgg 360 cctcccaaac aaactctttc taccagaaaa ggctaagttt ttacacatat tggcaaccca 420 gagacgatag aggaatccgt ggatgcaaca ttcgaattca atttgacagc gtggcttgaa 480 ttaaccaatc agcgcgtcgc tttaccgaca gcatgcatct ggtgacaatt agcgttgcat 540 ccacggattc ctctatcgtc tctgggttgc cgatatgtgt aaaaacttag ccttttctgg 600 tagaaagagt ttgtttggga ggccgaaact cgctggggac atggagacat ttatattcta 660 ccgcactgtg gtgggtgatt ttcgagattt tactcgtact ccaaattctg gccgcttgat 720 ctgatcgcat gtctccgaag cctgcctgcc tttacttctt tttataggta tatagtaacg 780 cggaatccct caactgctca aacgttagaa ataccgctta ttctgaataa atacacatca 840 caaagcaatg agagtttatt gtgaccttta ttctaggata taagacaatt ataggacaat 900 tacaggaggt gatcaatcgt gaaaatattc gagctagtta ctgggattga ctggagactg 960 actgagaggt tggtaagcct gtg 983 // ID DNA-5-15_NV repbase; DNA; NEM; 3393 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-15_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3393 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3393 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3393 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-15_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 3393 BP; 1108 A; 664 C; 611 G; 1009 T; 1 other; cagttaggat cataactaaa attggatgca ttttgtaaat aaaraaatta tccaatcaca 60 gcagagtacc caccccctcc cccttggtat ttgtatgcca agctatcact tgaaacaaaa 120 tggcggcgcg aaggggagta cgattataca gcctaaccgt ttctttgaag ctgtttgaca 180 ccccgaaaat aatatgccac attcaatatc gaaaaacacg cacttatagt tcactaaacg 240 ctgaacacag acccgggaag caccgtcgac tcgatgctaa tgcgttgtaa taagctaagt 300 acagcaacta aaacactagt gtaaaagttt tacttgatac aaaattaaat agagaacttc 360 taactttgcc cctctgtttt tctatcaaaa tcacgaggta tttaagttat tttaaactgt 420 tcttcaaggc agttacttca taccaggggt ctactataaa gccggagatt atacatagat 480 tttacttaat tttctcaata gtttcacgtg tgatcaaaat acaacggcgt acagtgaatg 540 tatcaaacaa taaaagtact tataaaaaaa ataagcgaaa gagagagagg gggcttaaac 600 ttgaacaacc tattctgggt gcaagtttac ttgtgtgacc acagtcattg tactccactg 660 gacaccatta agcagacata ctgtatgaga aaaatttggt gacagttaac ttatatgatg 720 gcttcagatg tcttcagaag aaaatcaccc ccattcccac ccctggatct gtctctgtat 780 gggtgtgttc attagaaata aggtatagac atgaaagccc tacagaaaat ataggacaac 840 agacagaatc attttcaaac attaaaaatt ataagcgaga gagagagagt attttggcct 900 aaaagtgtgg taaagcagca gaaatgatca tgaatttgaa tgtaatatgc tgagattgca 960 ttgtttctat tattttgtgc cactaattta ctttgcgtat tctagcgggg aattatgtga 1020 tcctgtgctt tgcacttgtg caccagaaat taatactgta gccaccatca tctccagaaa 1080 accaacccaa caaccccttt ccaaatactc caaagcatta agcagacata ctgtatgaga 1140 aaaaatttgg tgacagttaa cttatatgat gtcttcagaa gaaaatcacc cccattccca 1200 cccctggatc tgtctctgta tggatgtgtt cattagaaat aaggtataga catgaaagcc 1260 ctacagaaaa tataggacaa cagacagaat cattttcaaa cattgaaaat tataagcgag 1320 agagagagag agagaggggg ggggggctta aacctgggtg caagtttact tgtgtgacca 1380 cagtcattgt actccactgg acactaaaat ctttttttgc ttcaaaagct tatctttctc 1440 agtccaccca aaatgtagtt ttcataattt aattctttat catcagggcg ttgactatag 1500 attttcaagt gtgacagtat ttagaattag gagggtggta ttttttggac acaacccatg 1560 tattctagca taaaaaggaa cttttaaaag aaatccaagg tgctaagcaa tgaataattg 1620 tttttagtac ttttttacta aattgttggt caaccctcct tgtgtataac cagtgtgtgt 1680 aagtgtataa ccttacacat ccctggtata acttaccctc ctggtgaaat ttcatttgtc 1740 atgtcaacta actgaaattc ataaatattg ttaaatttta caagtcttgt gcacactaga 1800 aacaattctg cattattttg gcctaaaagt gtggtaaagc agcagaaatg atcatgattt 1860 tgaatgtaat atgctgagat tgcattgttt ctattatttt gtgccactaa tttactttgc 1920 gtattctagc ggggaattat gtgatcctgt gattagcaag tgtgcaccag aaattaaaac 1980 tagccaccat catctccaga aaaccaaccc aacaacccct ttccaaatac tccaaagcat 2040 taagcagaca tatgagaaaa atttggtgac agttaactta tatgatgtct tcagaagaaa 2100 atcaccccca ttcccacccc tggatctgtc tctgtatggg tgtgttcatt agaaatgagg 2160 tatagagaca tgaaagccct acagaaaata taggacaaca gacaggatca ttttcgaaca 2220 ttaaaaattt tatttttgat attaaatcag gcatcctatt ttagcctgac aatgttttga 2280 aaattacaaa ataatataac tgaatgatca attgtcaatt acacccacat gaactctcta 2340 tttttgaaca gaaattctgt ccgcttgact aaagggtgca acttagttta catgaacatt 2400 tttcatcttt ataaaagaaa agataacagg ggtttgatgt ataagcacta aacttctgat 2460 tcctttccat acagaagtct ttaaatgtag gcatgtatct ttataccaag ccaaagagaa 2520 tacggcagaa attgctttgt ttatttggca gtatccactc aaactttgca tcatgcactg 2580 gatttacgta aaataagttg ccatctagca tggtataaga taggtataca atgatttatt 2640 gtagaatact gcagaaaatt ccacttgtca tgtatctcaa gagcataccc cttgaaaaaa 2700 tatcccagat aaataagctc ctactcatgt gctcactagg ccagtccctt tcaatttcat 2760 cgattatttt tattcgcaac ggctactgta gcaccccaac caaaacgaaa agacaagaca 2820 aaaaaggttt accacaactc tgcttcttgc ttgttttagt cggctacctt tcttctgcga 2880 ctttgatgta tgcgagttac ctcaaacacg ctctcaggta ctggacgtga gattccatga 2940 tacagcatgt aacttgcgaa aatgtaaaca aaaactaaat ggcggggtac ccatggggta 3000 cccacgaggt attcgcttgt tcaaagcatc aaaatgatga aaaactattg tagattctgt 3060 cgatgtattt ccttttttgc tgacaccgtc cggacctaac gaaaatccca actttctcag 3120 atcgatcggg cacacatgag ggcgaaattt tgagtgacgt tggccgtaaa tcttgaaata 3180 aatattttct cgccacgatc gcactgattc tcttttacaa caaggcgtcc gggttcctct 3240 agcatgcagt aaacgcaata aatcataggt aggagtatta ttcggccgac agaagaacgt 3300 tttctgcgtg gttctctcgc cgcggctatg gctgccattt tgcataataa tgaggtaaac 3360 tgatacctcc aattttagtt atgaccctag ctg 3393 // ID DNA-TTAA-3_NV repbase; DNA; NEM; 2274 BP. XX AC . XX DT 14-MAR-2011 (Rel. 16.03, Created) DT 14-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-3_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TTAA TSD; KW NVREP81; DNA-TTAA-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1160 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1160 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2274 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-3_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-MAR-2011). XX DR [3] (Consensus) XX FH Key Location/Qualifiers FT CDS 240..446 FT /product="DNA-TTAA-3_NV_1p" FT /note="THAP domain (DNA-binding)." FT /translation="MTANSSKKPGSTCAAMGCSNNHYTTHVSIHASPKDPE FT IRKKWARFVGTKRKEFSIGSATALCSSHFADE" XX SQ Sequence 2274 BP; 719 A; 477 C; 403 G; 673 T; 2 other; agaaaggctg aactgtagaa taacttgttt tttcccactt attgatgctt taaggtagac 60 agttacctaa aaaaaagccc gtccaaggtt tttcattttt ttacaaaaca cgcgcgaagt 120 tgttgttttg ccattgcaaa ctgtctcgcg ttttgctcgg tcaaagccgg gcttatgacg 180 tcacaacctt ggtacagctt ctcaaaattg ttttaaaacg atagcaactt cgttttaaaa 240 tgacggcaaa ctcgtcaaaa aaaccgggca gtacttgcgc agccatgggc tgctccaaca 300 accactatac aacacatgtg tcaatacatg catctccaaa agacccggaa attaggaaaa 360 aatgggcccg attcgtcggg actaagcgaa aggagttctc catcggaagc gccaccgctc 420 tttgttcgag ccatttcgcc gatgaatgat tcaagcgatc aaacctgaat ctccctgatg 480 ctaaggcccc gaaattcaaa aggagtttaa agaggggacc tcttcctaca ctgcatcggg 540 aaagaaaaga gaacataacg gaaaaagctc gcaagggacc gcatgtacta agtatacaat 600 gcatatttac gacaattacg ctgtgacaga ctgtgcgagt cacagcaagt tttgaggttg 660 agttgttttt gttactatag atgttattta aatataagtt aaagaatgta ataaaacaga 720 atcagcctgg ctttagtggt catttctttt tcattgatac atttcttttg ttcaaaaata 780 caaaacgcaa aaatgaataa gcaagtattt cacacaacgg caacgcattt ggcctcaaaa 840 gatctacgcg gtcagattta ccaaacaaat tcttcacagc atggtaataa aagcacaatc 900 ttttaaaaca gttttatcga aaatgcaata cacatgacaa cattgtattc gtccacagca 960 ctcacaccga tagttattat aacgccacct cggatttcta tctgttagga tttcactgat 1020 agtttatttt cctctgactt cgactttctc cgatcgaggc aatgaatagt tcaacaacaa 1080 aatccaatga gatcaacaag aaaggatcaa atatccaatg gctggaaccg gaatctaaag 1140 agttgtacaa gtcattttat tacttttata ataatatcga gaacatgaca aaaattgaag 1200 aatgaaattt gagaagattt caagcgggaa aagtcaataa caatagcaat cgagcgcgtt 1260 ggttgaatga aagtttgccg taaaatcgat tacaaataat ttaatgtgtc attaatctat 1320 taatactcac atgaaacagg atttgcctat tttatttagt atgccaagct ttaatctgat 1380 ttgattcgaa ataaaatagg aaatacaggg aacagaacag gcaaattcga atgtacgaat 1440 tgttttgaca atctctacgg cgaacaaaac gaacgaaagc tatctaccga taaataaaaa 1500 aacattttta tttacctcaa tcccacttct ccatgctaga ttcatgcgag tccatattta 1560 tcaacctatg ctacttcatc gacaagtacc tctaaagttg agtcatcgtc tttcagtttc 1620 ccattcagcg ttgaaaacaa cacttccaat tccattcgta aatcgtagtt ctgtaatgtc 1680 aaggtttttt ttaatgcttt cgccttttac aagttcagaa tcaacttcct tacggcttgg 1740 agttcaccat agaagactga actcacattt gtgtattttc acagtgtttt atagtattat 1800 aaaaagcttt ggctgtgtct ccttttcacc agatgagcct tcaacgatcg gttcgccatg 1860 cgctctgata gtgatatggc ggaaactcgc atccaccttc ctcaaaaacc atctcaaact 1920 ccttgttgtc ttcttctgtt gaactcttat tgtcactggg gtctgtgagc tctaagcctc 1980 ttggcctggt actttcgatc gacgacgcca ttattcgact gagttctggg gctttgattt 2040 cggatctcct atatgattta acactaaaat ttcgcgccgt accatggttg tgaagtcacc 2100 acaggcctcc caacggtcca aattcggccc cagtctgcga gacattttct ttcgacggaa 2160 atttaaaaaa aatccaaaaa csaacaaaaa tgaagcgcct ttttttattc aggcttgcta 2220 cttaacctct agacttatgt tttagcaaaa taaagttttc gtttckgacc tagt 2274 // ID TE-6_NV repbase; DNA; NEM; 1091 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-6_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP380; TE-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1091 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1091 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1091 RA Kapitonov V. and Jurka J.; RT "A family of TE-6_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC It is a family of unclassified transposable elements. It was CC reported originally as the NVREP380 transposon [1,2]. XX SQ Sequence 1091 BP; 336 A; 199 C; 209 G; 347 T; 0 other; ttaagcaata aaacgcatat cccgtgtctg tctaggtttt tacagacacg cgggggatgt 60 tgggagaatt gataaaaaaa cttgaaagtc acgagccgga ggcgtcttat tgcttttata 120 aaataactaa gaaataacaa tcacaatcaa gagatgcgta gaattcatta tcaaaatcta 180 attctcctta aatagtgaga ctcgtgacct gagcgttgag tttgtcacgt ttgaaaaaca 240 gcggcgagaa gaagccgata tcagaaactt ttggaaacct aaaagaccag attaaacgcc 300 agcagtcact ccatcctcga aagaaatgac aaggagtgcg tgctcagagc tttctaggct 360 tgaaaagaaa agcaagtgaa ctgaagcgac tttacattga caactttcat ttgacggaca 420 tcgtggtcgc atcgctatga aaactttgta gtgctttgtc ttattctccg tccgacattt 480 caggtaaaat tttctggatc cctctttcaa ttctccattc tataaataat gcaggttcat 540 tgtaaagcaa ttcttgagat ctgaaaagtg taaagttatg atttagcggc aacttgcatg 600 cgtgtgtttt gaataaactg ttcgagattc tttgtaaaca tttgtgtttt tttgtctaat 660 aatacattct tcactttgtt tatgagagaa atgattatta agaaatatat ttcgaatcat 720 ttttctacct tctaaaaggg gaatcatcca ttttattgag tatttcgtgt gtttttattt 780 tcgtatcata acaccatcga tcttacttct cagccgcagc aaaacgcaca ttgatttgga 840 tctttcgtct tctattctcc gttcaaaatg tccaaactaa aatcaggcaa atagtcgcta 900 gcaagcattg cctgtttaaa ttcaagagaa aaacagtttt gcgcgaaata aaagtatata 960 aaagtcggcc gagtgagtgt tgcgttgcgt tacttgctgt caaaagcgtg tctgtactgt 1020 ttttttacag acacgctcat ttgaagctct cgaccaatca gcgcgcgaga tacactggtg 1080 ttattttata a 1091 // ID Gypsy-55-LTR_NV repbase; DNA; NEM; 143 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-55_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55-I_NV; KW Gypsy-55-LTR_NV; Gypsy-55_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-143 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-143 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-55_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 546-546 (2007). XX DR [2] (Consensus) XX SQ Sequence 143 BP; 32 A; 28 C; 35 G; 48 T; 0 other; tgtagtgtta gccattttgg gtaccctgtg gtacctgcct cgttttgagg taataaagat 60 gttgatatcc aatatggccg tctcgtgttg gcttgtgtca gtgtgcagga atctacttcc 120 atcgtcgtta agaaaacact aca 143 // ID CR1-2_NV repbase; DNA; NEM; 3654 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-2_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3654 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3654 RA Kapitonov V.V. and Jurka J.; RT "CR1-2_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 396-396 (2007). XX DR [2] (Consensus) XX SQ Sequence 3654 BP; 1142 A; 743 C; 727 G; 1042 T; 0 other; tgaaccagcg ggatggctgg tccattcgaa gctccgcttg aaattttgtt tttagccctt 60 cttttaagtt ctaaattgga ctttgacagt cccgaaaact ttttaataca cccaggactg 120 atttatcaac aatatgtagg ccaagaagca tttttaacct cgttttctgg aagaataaga 180 gtaaatggtc ggcctggttc cgccatcttg gattctcctc caacacgtgc aagactacta 240 tgtggtctcc ttctcctctg tggagacatt agccttaatc caggaccagc ttggaaatat 300 ccatgtggcc tatgcaagaa gcctgtgaag tcaaaccaac gtggtcttca atgtgactcg 360 tgtaacattt ggaaccatgc gaaatgtatg gacattagca taccatcgta cgagtccttg 420 gcaaattcgt cctgcctatg gctttgcccc aagtgtgacg cttccaattt ctctgagact 480 ctgttaagcg cttcaacatt ggagctctca aactccttca attttcttcc aagtcaaact 540 tcgtccccag ttgctaaaac tacaccaaga aattcctcta cgagttctgt gttggaacat 600 gctcgcaaga gctcacgacc acgccataaa caaggcctga aggtatttaa catcaacttc 660 cagagcctaa agaataagaa ctgtgaattt caagctttcc tagcaactga gagtccagat 720 atagtaattg gaactgagac ctggttgaat cccagtgtta aaacctgtga attcttccct 780 tctaattact cagtatttcg gaaggataga ccggatggat atgggggagt tctattagca 840 gtcaaggatc tcagctgtca tgagctttac gaacttaact cagactgcga aacagtttgg 900 attaaagtct ctattaacag aaggaaacat gtatatattg gagcttttta caaccctgac 960 agttcttgcg aggcacttga tgagttagac cgctcccttt caaagctaca gaggaagtct 1020 ggaaattcag ttatatatct cggaggtgat ttcaaccttg gaggagacat atgctgggaa 1080 acaaacacca ttgcaagagg aagccgtcac gtcacagctt gcgagaagct actggagatg 1140 tgcagcattt atagtttgga gcaagtggta gataagccta cccgtggtga taagatcctt 1200 gacctgctct ttacaacaaa tagcaccctt gttgactcag tacatgtcaa acctgcaatg 1260 ggagaccatg gatgtgtgga gatacaaacc ttagttacac caaagctggc acgcccgatc 1320 aggaggaaga tctttctgta ttcaaaaggg aactttgttg acatgaaaag ggacctacta 1380 gagtttagct ctgtttattt cacaaacttc actgttcgat cattgcagga aaactgggac 1440 atgttaaaag gaaaactttc ttctcttatg gaggaatata tccctgctaa aatgtcctca 1500 agtaggtaca atctcccttg gtttactcac aatctaaaca aactcaaaag aaaagtccaa 1560 agattgtata acacccagaa acgtacaggt ttggaaagtg acaaaaggaa atttagacaa 1620 actcggaaag cctatagata taagctaaat aaatcatatg gagattatat aaataatttg 1680 ctagggtcct ctcaaagaga acaacctaag aaattttgga gatttgtgaa atcaaaaagg 1740 caagataaca tgggtattaa cctacttcat aaccagcata atattgctgt ttcaaatagc 1800 ctagacaaag caaatgtcct caatggttat tttttctcta tttttactaa agaggactct 1860 agtacagcac caagcttaaa tccaaattca tcaagcccag aaatgggtaa aatcatagtc 1920 acctcaaatg gtgttcagaa gcttttgaat tcacttgatt caaataaggc tggggggcct 1980 gataaattgc caactcgtat tttaaaggaa ttatcccaag agttggcacc cctatataca 2040 caacttttcc aacagtcctt agatcaggga aaattaccca tggactggaa aattgccaat 2100 gtagtgccaa tttttaaaaa aggtaaaaga tcatcaccaa ataactatcg acccgtttcc 2160 cttacatctg ttacttgcaa aatcttggag catgtaatat gccaccatgt ttggcaacat 2220 ttggagcagc atggcatact tagcgatttt caacatggtt tccgtaaaag gaggaactgt 2280 gaaacacaat taattataac atgccatgac ttagtaagcg ccataaatca agggaaacgg 2340 gttgatgctt ttatcttaga tttttcaaag gcctttgacc gagtgccgca tagacgactt 2400 ctttacaaat taagctatta tggcatcagg ggtagcttgc tgacctggat ggaagatttc 2460 ctcacccaga gatcacagtg tgtaacacta gagggtgcaa catccagtca atgctctgtt 2520 acctctggtg taccacaagg aacagtttta ggaccacttt tgttcctgct ttttgtaaat 2580 gatctccctc taaatatctc gtcaactatt aggctttttg cagatgactg ccttttatat 2640 cgcactattg atggctcaaa tgacagccta gctttacaaa acgatcttga tgctctaaat 2700 agatgggaga gggattggca aatggccttt aatgtggaga aatgccacac tatgtgcttc 2760 tccacaagca gagcgaaaat tccagaccat ccctatatac ttaacaacag gattctagag 2820 agggtttacc atcactccta tctaggagta ctactctcag gggatttaaa atgggataaa 2880 cacatcgcac aaattacatc tagtgcaaat cagacccttg gggtcattag aagaaatttt 2940 agaacagcct cggtagactg caagtctaaa ctctattgca gtctagttag accgaagctt 3000 gaatatgcaa actctgcctg gtacccgcat ctccaaaagg ataaacaccg ccttgatatg 3060 gtgcagagga ctgcagccag agtttgctat aataattatt tgagggagcc aggggtcgta 3120 acaaacatgc taagagagct ggagtggcca tcccttgagg gcagacggac tctctctcga 3180 atgtccatgt tccatcaggt tgtttatgga actgtggaca ttgagggaga gcccttcttg 3240 gttccgatgg accggccttc aaggaatggc aactccaagc gcttccatag aacacattcc 3300 aagtgcaacc agcatgcaaa tagctttttc ccgtggtcta taaatttttg gaacaattta 3360 ccaggttcaa ttaccaacat aaaagaaaag ggcaaattca aagagaagct tcagcagcat 3420 ttaattgata atggccagtg gttctagtat tcaagttata aattaattaa gctaaattat 3480 ttaattgaat tactttattg aaaattattt tataaattta ttttacaaat tatgaatata 3540 ttgtataagt tatgtaaatt attccagatc tgtatatttt taccttgtat ttatttatac 3600 tgatgtgata ccgacatggt tttatcagtt aataaagtag aagtagaagt agaa 3654 // ID TE-7_NV repbase; DNA; NEM; 354 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-7_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; ~9-bp TSD; NVREP44; TE-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-354 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-354 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-354 RA Kapitonov V. and Jurka J.; RT "A family of TE-7_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 85-99% identical to the consensus. It was reported CC originally as the unclassified NVREP44 tranpsosable element CC [1,3]. This element is inserted into copies of different CC transposabele elements. Usually it is flanked by 7-10-bp TSDs. CC Often formes inverted structures and can be composed of several CC tandemly repeated copies. XX SQ Sequence 354 BP; 83 A; 86 C; 91 G; 94 T; 0 other; gttgccgaac tgcacgggta atagactgtg ctagcgtccc gtcttggccc gactggtgcc 60 aatgtgtgta tgctagtgtg cttctaaagt ccacatttat gtatacatac tcgcaaggat 120 agtttggcta tccgacggag ttttagacta gcaaaggtcg catgcgtgat ccgcacaatt 180 ggcatcacgc tagcccggtc gcagctctag atcccacatg gatctaagct gtggtttaaa 240 gcacttcgtt cgagtcgaag tcgccctgca gtttttttgc cgatgaagtt taactgaggc 300 aaaccggcta tgccatgctg acgagtccta ataaggacga aacagctgtc catg 354 // ID DNA-9-4_NV repbase; DNA; NEM; 808 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-4_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-808 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-808 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-808 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 808 BP; 234 A; 172 C; 188 G; 214 T; 0 other; ttccctgcta gcagaggcct cttttctctg tatttcgctg ggctggagtt cgcgaggaaa 60 agatacctct gccatgggtc gaaactgttt ctgttgcgca tgcgtgagcg ttaataagcg 120 accgcatgac gtgccaaaac ccgtaccatc gcgcgaaagc tgtcaatatg ctaatatgct 180 ttgcatgggt ttagtcggaa atcatgaatc aaactccggt tagttctcct cttcgaaaaa 240 agaaaacaac tgttcaattt caatcaccta aaacgtcact aaaaagattg aacaacaaac 300 gcagcaaaga cgagttttgt cttgtttgtg ggattaattt caagacatct gggcaggcga 360 gtttcttcaa tgtaaatatc gcacagttgg attcgaagaa aatgttacaa aactttttgg 420 taaacttaga tcagctattc ccagaagaat atgcaaaacc tgtaaacgga agattgactc 480 gttagtcaaa agagagaaaa ttctgaatga agataaggca ttgaatggct tcttttataa 540 ttcgtcgcgt gatatttcta cggaggacgc cgtttcgaat gcgggcttat tatcccgcag 600 cggatatacg tttcatgcat gcgctagtca ttgtgggctc aaatagtggc cagtaattaa 660 tgaacggagc atgcgctctg gatctcccgt ccacgatcgt ggacggcggt ttgatcaaac 720 gaacttgcga cccatggcag aggtatcttt tcctcgcgaa ctccagccca gcgaaataca 780 gagaaaagag gcctctgcta gcagggaa 808 // ID hAT6-N2_NV repbase; DNA; NEM; 190 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A family of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW NVREP301; hAT6-N2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-190 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-190 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1195-1195 (2007). XX DR [2] (Consensus) XX CC It is a family of non-autonomous hAT DNA transposons that belong CC to the hAT6 group, characterized by 6-bp target site CC duplications. hAT6-N2_NV contains 13-bp imperfect TIRs (1 CC mismatch) and shares common termini with the autonomous CC hAT6-2_NV. The hAT6-N2_NV family is relatively ancient: genomic CC elements are ~10% divergent from the consensus sequence (11% with CC CpG included). XX SQ Sequence 190 BP; 47 A; 48 C; 34 G; 61 T; 0 other; catacctgcc aactctcccg gttttcgcgg gagactcccg gtttttagcc ttcatctccc 60 ggcaaaaaaa tcgaaacttc ctatacattt actgtaatct cccgggaaaa ttcatcgaga 120 atttcttata cagttcttgt atttgaagca caatctcccg gtttttgagc tttcaaggtt 180 ggcaagtatg 190 // ID Daphne-1_NV repbase; DNA; NEM; 1340 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Daphne-1_NV non-LTR retrotransposon - consensus. XX KW Daphne; Non-LTR Retrotransposon; Transposable Element; CR1; Crack; KW NVREP579; Daphne-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 475-1340 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 475-1340 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1340 RA Kapitonov V. and Jurka J.; RT "A family of Daphne-1_NV non-LTR retrotransposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [3] (Consensus) XX CC There is not enough sequence data to recover the intact CC retrotansposon. The consensus codes for the incomplete RT domain CC damaged by a few mutations. XX SQ Sequence 1340 BP; 503 A; 240 C; 175 G; 419 T; 3 other; acttctatgw tccgaggaac atgtcataaa tggttcgaaa actatcttaa agacaggaga 60 cagatagtaa aattcaaaca tgtaaaatca agagaaatga caattaaatg cggagttcct 120 caaggatcag tgttggkacc acttctattc ctcatatata aatgatatcg taaactcaag 180 ccagcatttg tcatacattc ttttttgcag atgacactaa tttgtattgc tcgggaaaaa 240 acataaaaat cattgaaaat cccataaaca aagaactaga ttcaatatcc ctttggttgc 300 attcgaacca actaactcta aatattaaaa agacacatta tatgatattc aaaacaaaac 360 aaaaatcttt agctaacgac ataaaaatat caatcaatga taaagaatta aaaaagtcaa 420 cmttacaaaa tttctaggtg taataattga cgataacctc acatggaata accacataaa 480 ttttgtcaat acaaaaatat cgaaaactat aggagttata tgtaagcttc gtcactttat 540 aagtcagcaa gttctgaaaa cagtatacaa ctgcctggtc tatccttacc ttcactatgc 600 taatattatt tgggcaaata attaccaaac tcggctcgac aaaatattta aactgcaaaa 660 gaaactagct cgaataatga ccttttcaga ttacctcgct ccatcaaaac cacttttcaa 720 atcattaaat cttttaaaca tatacgaaat aaatgaattg actttcttat tggctgcttc 780 acgtacaagc ttacaactaa aaatctacca aagtactttg ataacttcta cccccccccc 840 ccccttgcat atgtacatac tattcatcac cataatacaa gggggcgcgg aaaattgcgg 900 caacccctca gtagatcaaa ttatggcaaa ttatccacta ggaataaagt atccacaatt 960 tggaatacta ttcctgattc attaaaatgt tgtaattcct ttaggctatt taaaaagcaa 1020 tacaaaaatt acattttaga gtgtaacaag ttttagattt ttctccaaat aaccaacctg 1080 ttgtaaatat attatatgtt tttttttctt ttctgcttga ttggcatatg tgctgtgata 1140 caagataact taaacttatt tgtcatgaaa ttatacgctt gtacatgtag ctaatttgat 1200 acctttaatg aaaatatata tgattctttt agaaaggtgg actacttgtt aaagcctgtt 1260 agggtttgtt tagtcctcct accaattgta ataagaacat atgtatatga caacaatcat 1320 aattatggta aataaataaa 1340 // ID hAT-3N1_NV repbase; DNA; NEM; 415 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-3N1_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW 8-bp TSDs; non-autonomous; former NVREP633; hAT-3_NV; hAT-3N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-415 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-415 RA Kapitonov V.V. and Jurka J.; RT "hAT-3N1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 588-588 (2007). XX DR [2] (Consensus) XX CC hAT-3N1_NV is a family of non-autonomous transposons derived from CC the autonomous hAT-3_NV. XX SQ Sequence 415 BP; 122 A; 84 C; 91 G; 118 T; 0 other; caggggcgta cgcagcctat aggcctgcag tcactggact gcaaaaaaaa tttggcgatc 60 ttatttgcat aacgagggga aaaaatcaaa tgtttactca ttcattttta tgtacgtagt 120 tttatatata tgatgaggat aaaaactata attttcttaa tcatggtagt ctacagatga 180 tttccaaaca tattgttatg tcgttcagtg ccacgcgacg actgaagtcc tatttcagat 240 cgaggatgac agaggatcgt gtaatattct caaaagtctg acgcattgac gccaatttca 300 aacccaaaag cgggagctat gaaatcttca cggggatgcg ggatgagggg ccacgccctc 360 attcagcttc tgaatgcttt gactgcaact tgttaaaatc ctgcgtacgc ccctg 415 // ID DNA-TTAA-5_NV repbase; DNA; NEM; 806 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-5_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP160; KW DNA-TTAA-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-806 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-806 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-806 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-5_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~93% identical to the consenus. It was reported CC originally as the unclassified NVREP160 transposable element CC [1,2]. This family can belong to either Kolobok or Sola3 CC superfamilies. The real size of the target size duplications is CC not clear: 4-bp (TTAA), 2-bp (TA), and 0-bp (TT|AA). XX SQ Sequence 806 BP; 253 A; 151 C; 144 G; 258 T; 0 other; gggcctatgg tactatctcg ttgctacgaa actccgttgc tacgaaaggg aaaagcgcta 60 cattcggtta aatagactaa aatcgccgcg cgccttccaa cttgattccg tggcccagtg 120 gttagcacct ttgactcgta agcaagcgct ccgggttcaa tccccggtcg agtctttttt 180 tttattttta ttttcttcga aactccagtt ctaattttct tttttctttt ttcccaagag 240 attaaaataa actttcgaca ttttgtagaa gaaaatgcaa tttttatatg tttttcgaga 300 ataaaaatag atggcgaaaa aacaagatgg cggccatttc cgcgcgagaa aaacacgtta 360 attttgaaca ttttacaaca attgtgaatt ttttttcact caaaccattg atattaccat 420 tcctaacaac ttagcgcatg ggatttttga tttttgaaga aatgaaaaag ttattaccaa 480 atatgtggtt ttcgaagaac ataaaaattc gccatttctc gcggtatcaa aatttcgcaa 540 atccgatgcg tgaagtttta gaaaatagtg atgttaaaat atttctgcaa aaaaaattat 600 gttagatttg aacagtagct tctccgacac gtttttctgt tctgggtcac gtgaccatgg 660 gaggggtcag atgacgtcat cacttgtgtc atttatgtct aaaacactta tgttgaaagt 720 tccaagagat ttgacaaaaa acagaagctt ttataaaaca aacaaatttc cctagcaacg 780 gactcaaaag atagtaccat aggccc 806 // ID Chapaev-3_NV repbase; DNA; NEM; 7071 BP. XX AC . XX DT 01-APR-2011 (Rel. 16.04, Created) DT 01-APR-2011 (Rel. 16.04, Last updated, Version 1) XX DE Chapaev-3_NV non-autonomous DNA transposon - incomplete DE consensus. XX KW Chapaev; DNA transposon; Transposable Element; nonautonomous; KW 4-bp TSD; Chapaev-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-7071 RA Kapitonov V. and Jurka J.; RT "A family of Chapaev-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (1-APR-2011). XX DR [1] (Consensus) XX CC Copies are 98% identical to the consensus. Its internal portions CC is incomplete due to the lack of sequence data. As a result the CC Chapaev transposase is also incomplete. XX SQ Sequence 7071 BP; 2315 A; 1361 C; 1331 G; 2045 T; 19 other; cacggctgtt tcgcagtgga cattaggttc tagtctctcg cgcggccaaa accggttgct 60 aggtgaattt gagtctatgg caaccaaaat ggcggcgatt ttaaaatcgt aaacattgaa 120 aaagatggct agaggacacc gcccataatc aaaattaacc aaaacaaata tcagaatgtg 180 ttactagcat ccaaatgttt tcaaaaatgc aaataccatt agtcatagtc cgaaaaacag 240 agagtgaacg gcattgaagt tcaaaagccg gcgaaggagc atagtatttc gtacagcgaa 300 aactagctca aagaccgtga aaagtttccc acatcgcaac ttattttgaa tagaggtaag 360 acatttttgg ttactttatt tattccttgt gtcagattca ttaaaatatt tgctgtacca 420 tttttttaaa tgagatccaa gtaatttctt ttcgcgggtt ttctcgtgtt ttcgcgcgcc 480 ttatgttgca attacttacg ttgttgcagt taacatggag agtcccgatg cgatgcatgc 540 agcgttccta accaaaagct gcaggatttg cggaaaatac agtggaagaa gtagtagcaa 600 tcggttttgg aaaaccaacg atgaatttgt aaaatcaaaa atttatcaaa tctatggcat 660 caacatcgaa aaagacaacc aactgatcca tcctgaacaa gtatgccata cttgctattc 720 ccaccttgac aaacgcaatg ttagaaagct ttttacttgg ggcccgcatt ctttacaatg 780 caaaatatgc gaaatttttg cagccaaaag gcaaggcgga cggcccccca aaaagggtgt 840 aggaagagga agaccaaagg gtaaatccca aaacgagcag agcaacacag ccacgactat 900 tcagtcaata ccaaaggaaa tgattcccga tgttcttatt aacgaaatgc cagaaactga 960 acgctttgtg tgtcctcccg actttgtttt ctgtgctata tgtaaagagg ttctgacgca 1020 gcctatagca actccatgcg accattactt ctgtgtgctt tgcatctgcg aatggctaga 1080 tcaaacatac aacaaatctg gatgccccgt ttgcaaagcc agcatttccc ccggcgtgct 1140 gcataagatt ccgcgagttt taggcaacac cctagcctca tgccaagttt tatgtagatc 1200 atgtaaggaa ccacatcgtc tggataccct tgccgcacac gaggcaatct acactacgta 1260 catagcgcag cctgcgacaa caactgtgcg cgaaatcctc aatgcgggca aagacacccc 1320 actctcacag gtcgaggagc ggatatgtac tcagttaatg aagaggaagt tgagtgtatc 1380 ccaatctctg ccagttctct tgtttacagg tggcacggtg agtatattat ccagaggggg 1440 ggggggggag gatgcggggg tgcgtggagg atgtagtact ccaagcccct catggtggtg 1500 gtggtgtgtg ccttgcattc tgtagtttcc atttttcaat gccaatgtcc aaatcaactt 1560 gaattgggtg tataactaga atgtaagaaa gagtacaaac atgttataaa tagccaccta 1620 ctagtggaac aatatgcaag gcaagtagac ggatagtata gtttcaattt attccataca 1680 tacaatagca tagttttgag aaaaaaaacc ttctatcatc tgtgacacat caaagggctt 1740 atacatattg tggtacttta tactaaaaat tatcaaatat agggggggca ttcggcctac 1800 ccagattcga cctgacagtt tcagtaaaaa aatcagtttt tactaaaaaa aattccattg 1860 cataatttta atgccttgag caatggctac gtttgacagg tctccttctc ttaacctttc 1920 ttattaagcc attgaagatt tgccatgttc cacgaccacg taccaacagt gcatctgcca 1980 gcagtaagac agtgcagcgt agagcttctg tagttgaaac acttaggcag caaatcagtg 2040 gtggtgaacg tgatgacatc ttaaggcaga aaaaggctga gatgcaaagg atgggccaag 2100 aggagagaga aaccatagca caagaagctg ggctgaagat tgaagtacct gaagggcaag 2160 ggctggccat gaaagcagac atagggatac cctggaacaa attaagagag ttgaaaaggt 2220 agagattagg ttttatcaca aacattatag atagttctta aatatacagt aacaaaacac 2280 tcagggcata aaaaagagac tacttaataa tagagggtgg ctattaaatg gaggttatta 2340 aataatgtac ggaagtatag catatcagtt tggtgtcaga aaagtagcag tttaatagag 2400 ataacactgt aaagacccct ttcaagcctt ttccatgggt cttatcaaaa ccgcaataag 2460 gctttgctca cacttggtgc tcaatctgaa ccccccagtg cctgagccaa aattcaggct 2520 ttgtgctggt gccctgcatt tttctccgtc attgtctagt gctcgggcac tggtgcctgt 2580 gcaccaagtg tggacacagc ctaagtattg tttgtaatta atttcataca tcacagtcat 2640 tatttttatg caattttagg tggcttaata gctttgggtt gcaaattgcc agtgagaaga 2700 aacagcgcaa gctagcagaa ggccaaaagt tcacagacat ttattcagag gaaatgccat 2760 ttgtttttag caagaccgga ggtggcacag aaatacgtct ggctgtctgt gcccaagttg 2820 aggaccttac agccctggtc tatggccact tagaggagaa catggagtaa gtttcacacc 2880 ccaaattctg cattattaaa aatatttttc catttcaaaa caaaaaaaca gttctttgtt 2940 tagatgctaa tttwwwwaaa aatggttccg agatcaatga tattaaagaa gtgtggcccc 3000 atgttgccta caacaaccat attttgctta ctgctagata caacaatcta acctggcgtt 3060 aaagttggtg gwgacmaggg tggaggatct wtwaagctgc tgtttgagat tgtaaatctg 3120 aagaaccccm attcmagtaa aaactcagtt gtcttctcaa catttgaggc accagactgt 3180 gcacataaca tggaacttgg cgtgcagagg tcatgakgga tactgaagac ctagagaaga 3240 aaccatggag gttagtggct actggaaatg cattgaaaaa gcattcatta ataacagctt 3300 gttgtgcgtg acccataaak tgtactgtgc caaatttaaa tgccagtgat tctattcaga 3360 aaccctaaaa ggtacwataa gcagccctat cctcttgata wagggagccc cccaggtgtt 3420 tttcacaata tcacactgca aacttgtaaa taacataaat aattgttttc ctttgtattt 3480 tctttaagaa acaagcagat caaagtgatt gtagctggtg actgcctttc tgtgtttaat 3540 ctatkgactg tcaggtgcaa gtggtaagat atacatttwc agtaataaaa atatccatga 3600 ctttgttwaa caatgctgtt gttgaaggtg tgtgtgcctg cactgcacct cagtatagga 3660 atattcaaca gactgttcct tcttctggtt ctatcccttc aagcaatgga cttggctatc 3720 gctaactctc ttgcaaaagg agataagaag gtttaaagga ttttttttct tagaaattgt 3780 gctttgatag aacattctat acaatacatc aaaaattatt ttatgagatg ttgcatccca 3840 tttggagcac tatatatata ttcaccattg gatttgggaa atatgtttat cctaatgaca 3900 tatactggta ttaatcaatt cacatgatag tcaagttaca tttacgaatt aaacttgtat 3960 gctttgtttg cactaaggtt ggaactgttg agttccaaaa gttggttaat gacaaacgga 4020 aacagctgca ggtccactcc ctgctagagg aagcagctga cctggaatct atggcaacat 4080 atgctgcttt acatcaaatg cccctgtctg aaaccgacgt ggaacatctt attgcccagg 4140 cattagtctt gcaacaacaa gcaaaaacct ggtacattac aaccataata aaataacmtt 4200 cacagtaagt ttttttagga aatgtattgc atgcaattac ttaatggcaa tcacacccac 4260 aaatgtctta aggtattaaa gtgacactaa attattgaaa tctagcatat tatcacactg 4320 tttcacaaac acctttttct ttttttaaag gaaaaaaacg tgacaaagtt agctgaaata 4380 ccatcaacca tggtatctca cagtcccctt gataaagaac ttgaagatca ggcaaacacc 4440 attagcaaac aatttcagga gttgctggga tcatatggca gagtccatag acgtatgaat 4500 ggcaagggga aacttagcag tgaagatata acagaacttg gtatgatagt aactgtatcc 4560 atgatttact catggggggt aaaatgatgt aacacaaaat gttggtatag gtaatsatac 4620 agtttcaagt tcaatttggg ataaatttat cacagtcatt atttttatgc tctttaatat 4680 attttgtttt tagaccaaga catcaaatat ttcatgagtt tttatcgcgc cacctttcca 4740 cagtcctcaa tcattcctaa aatgcacatc ctcgaggacc atgttattac ctgggtcaag 4800 atgtacaaca caggatttgg gttactgggt gagcaaggga ttgagtctgt gcaccaccag 4860 ttcaacaagc tgagtgctga ttacgctggt gtgagaaata ggagcaatcg tgctaaatgg 4920 gtaatggagg agcaccacag acgatgccat ccagaaaaca gatcatatgt cccagtccga 4980 aaacaacgca aatgcataga agaataggga catgcaacaa tgtcacaact agaaatcaag 5040 attttcttaa aactctccag taccttcttt cctgagtaaa ccattatata tttgaattta 5100 atcgttttga atattattgt ttacacaata tgacataaca atatattaat actattgtac 5160 aaatgtaagt aaaaaacaat atattaatac tattgtacaa atgtaagtaa aacattgcta 5220 atgtaaataa gcctttttct gtagtcacac aataattaac gtaaataata aataaataat 5280 gtacatattg taaagaatac aaattgtaaa cattgaaaca taaattaaag tgaaaacttt 5340 ctcttcttca tcattttctt ctctttctcc ctttttagtc tttcttctaa ttcctgtttc 5400 ctcctcagag ctttctcctt ctctgcgctc tcctcctctt cagtcctgaa aaaaggcaca 5460 taatcagaat caggcagttt aattaaacta tatttattag gaaatgatat tacaacagaa 5520 aaccaaaagt taaataataa cttacaagta ggtctttgga aaacagcata cactggttga 5580 ggggaattaa tacaaaaatg atttacatgt caaaatataa tacagtgaac aactttgaca 5640 gttattggta gaatataata atagaaatta acaaaatatt atatcttccc atggcaatac 5700 tagcatgcat gcacatacat ttctctagtc aacatatata gtcaaaatca atattaaaaa 5760 aaaaaacata agcttaagct taagttactt tgaaaatttc atccataaga aagtttagtc 5820 ataattcatt tctataggta agtttttgtt ttctgtttca ttttatttag cgctttagaa 5880 ctttataaca catagtttta gcgctttgtt tgaataatat taaattatta ttattataag 5940 tataacttaa ttccaatttg tattcattgt ttcaataagc aaaaaaaaat taagcaaaaa 6000 tacttacaaa tccacatacg aaattccatt ctccatcttt ttttttcttc ttaaattctg 6060 ctgtcatcct tctcctaaaa tatacaaaaa caaaacaagg ttgagttcag gtgcaaaaat 6120 aaacaatgaa tgcaaacaaa atcaaactta ctttctttct gcctctgccc gccaaatatg 6180 tgcgtttagc cttagcgtct tctccctcct ctccctcaac ttcctctcct cctcctcttc 6240 atcaacccac tcatataatt gggtttcgtc ctccattttc ctttagtatc acgacgaaat 6300 aaaaattgcc gggtgtacca cgcgcgtgtc gtaaaaaggc gggaaaatag ataaccaaaa 6360 aaatattggc caaaaaatgg aaaataactt acacagatat ttcacgcttg tcaaaagtaa 6420 gtaaataatt ccaggtgatg atactgtgga aacagttgtt agagtttcat aaaagaagca 6480 taccaaaatt tatccgcttg aaaagaaacc cttgaaacaa caaaacaaat gcagtggaat 6540 gtcgaagcgg agttcgcttc cttcgattat caattaggct aaatgtcggg attcctaggt 6600 aagacaaatt tacttttaaa aaaaatggta cacctgtaga aacatcatat tggtaagcta 6660 aatagtcaaa tacaacaaac ttgacttacc gaattgaagg aataagtgtg agtccctgtc 6720 atatcccgcc gtgaagttca cgaaaaatcc aacttctgct gatgccatct tcgaaatgta 6780 aaatttgccg agcggtttta cccatatttc ttctcgaatc tcaccaaaca gtgcaaatac 6840 agttcataca tgttgccttg tgaatgtgct tcacacattg ttcgatgtgg ttttagaaat 6900 gaaggaggaa attcagctga gaattcagct gtttacaaga gcttttttct ctggttgacc 6960 ctggtgtctt caaaacaagc gcctcgcttt catgctagca taccgcgtat gtgagcgcgc 7020 ggagggacct agaacctaat gtccaccaaa cgcgcatatg aaacagccgt g 7071 // ID DNA-TA-8_NV repbase; DNA; NEM; 141 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-8_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-141 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-141 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-141 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 141 BP; 58 A; 21 C; 24 G; 38 T; 0 other; gagtggtttt caaaatcccg tgcaacaaaa tgtaattgtt aaagtgtaat agtcaagcca 60 gaacaaaaga gaacaaagac attacagtgt attagtacta aataaactaa atagtatttc 120 acgggttttt gaaaaccact c 141 // ID Gypsy-27-LTR_NV repbase; DNA; NEM; 180 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-27_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27-I_NV; KW Gypsy-27-LTR_NV; Gypsy-27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-180 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-180 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-27_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 486-486 (2007). XX DR [2] (Consensus) XX SQ Sequence 180 BP; 63 A; 37 C; 33 G; 47 T; 0 other; tgtgacaata tcggctgtac gtgacctatg ggtcacggaa cccgatttat tgacagcttg 60 aactctcatg tgattactag atcagatagc atagccaaaa gcgttgagac cagaatcaaa 120 aggcaataaa tcacggaaat acacaatatc aaaacttcgt tcattcatca tattgttaca 180 // ID Harbinger-N26_NV repbase; DNA; NEM; 364 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N26_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TwA TSD; Harbinger-N2_SP; NVREP329; Harbinger-N26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-364 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-364 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-364 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N26_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 88-93% identical to the consensus. It was reported CC originally as the unclassified NVREP329 DNA transposon [1,2]. CC This transposon's 76- and 89-bp termini are 85% and 83% identical CC to the termini in Harbinger-N2_SP from sea urchin. Such high CC identity points on horizontal transfer involved in evolution of CC these two families. XX SQ Sequence 364 BP; 102 A; 72 C; 64 G; 126 T; 0 other; ggccaagtaa aaaaaaagac atgtttatcg tccccgcccg catccttttt cggggccgca 60 tcaatatttt tattttttat ttagttattt ctgctgcttt tttgattgtt tgttcctcag 120 aagttcaaat ttcgtgcgtt agcggtgcct gggcactgaa ataaaggcag acgttcccgt 180 ttcaaggctt ttcttacgat ttttttcacc cgttcgcaac atcgcggaaa tttcctttgt 240 gaatcgtaca aatctttgat aaaccaagga gaaaaaaaaa taaaaaataa taaataaaaa 300 gggccgcatg ctccctattt tgatcttatc aggacgataa acatgttttt atttttactt 360 ggcc 364 // ID Helitron-1_NV repbase; DNA; NEM; 9691 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-1_NV autonomous DNA transposon - DE consensus. XX KW Helitron; DNA transposon; Transposable Element; Helitron-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-9691 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-9691 RA Kapitonov V.V. and Jurka J.; RT "Helitron-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 596-596 (2007). XX DR [2] (Consensus) XX CC This is a family of autonomous Helitrons. The Helitron-1_NV CC encodes two proteins: a RepHel protein fused with the OTU CC cysteine protease (N-terminal portion) and AP endonuclease CC (C-terminal portion) and a RPA70-like ssDNA-binding protein. CC RPA70-like proteins are also encoded by Helitrons in zebrafish. XX FH Key Location/Qualifiers FT CDS 312..7484 FT /product="Helitron-1_NV_1p" FT /note="OTU cysteine protease/RepHel/endonuclease." FT /translation="MYSIPFVFSTRHNLLCICHVGISKEYFRFWGALCGLF FT ANKSSIASLALLHKTSPYGRMVSFNSLRGTNKPRNGAQNLLRESIEFLREA FT NKPRNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRETNNHSNVTER FT HYNGKYCGNQFVNKSIFGIPVYMLLYLSDKTGQTNHIFSTVYNDRSNLVDE FT FTSKTSNNSITNAFEKTMPSIENKHDNNKHASCPSIKISKCIENHRHSRIC FT SKQLNHKCRDREPSRISLKKVMRLLRYRKLRKRHKKMIIKGTPVSSVFYRI FT ATNYNYWKLKYINRLNSFYSSFFRATCKTSVRYNGCKQTLLLSGDIELNPG FT PVTDNNNIEDICLYSNGDFTLRYRMLRHGLTPLDVGGGGDCFFKSVSHQLY FT GNSNKHAEIRALGVRYLKDNPERFIESIIDSSWSQYLTNMSLQGTWANHII FT IQAVADAMSLKIHIIESDSNIREVTLVEPANTIINNIRTIYIGHIGQVHYV FT STCSVSHQQSSNNIDRENTISSRPEKRKQASTSKSSNSNETKKQDRATYIR FT QYMKEYRQSKQNNTSPEKKSKRNEYQRNYREMNASPEKKLKCNEYLRKYRE FT INSSPEKKLKCNEYLRKYREMNASPEKKSKRNEYQRKNREMNASPEKKSKR FT NEYQRKYRANSSIEFAIKRFHEIVNQGPLYICICCDQLWYKHSVSSTTKLR FT QSNPDVVKYLSNKISVGNKEWVCRTCSNYLQKNKVPPCAVANGMAFPDKPD FT FFDLNELECRLLAPRIAFQKLMQAPRGRQLKIHGNIVNVPADVTHTVSILP FT RLQNQTATIKVNLKRMLKYKSSALSLNVRPYKVLQAANWLITHSSLYRDEG FT IVLNNDWINQYNRADNDEINEKVQSDTIDETDDNDIDSEGLDQNESHEDEA FT ETIAGVTDTMFTATDFLEDNERQNILNIAPGEGNRPLSVFRDKYCEELAYP FT GIFLGQPRIDNKQRLVDINYSDICKSELRRSDRRAAVCIENIFYKTKKLQM FT KILLGKSHIALRKCKGNNKNITAGQLKQQGSIDRLIRHDDGYKFLNALRGS FT PPYFEKAKKDLFAMIRQLGPATLFCSFSSAETQWMHLLRILGQLVDNKEYT FT DEQIDNFNWDDRCRLIQSDPVTCARHFDYQVNQFLTNFLFSSAQPLGKISD FT WFYRVEYQQRGSPHIHMLMWLEDAPQFQIDSDEDVTSFIDKIITCQKPVDN FT ADLLVLVNRQVHRHSHTCRKNTSSKCRFNYPQPPMKQTMIIYPLDEDTPEK FT EIKIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINT FT PTVFLKRNPNELRINNYNPDCLSAWRANMDIQFVLDVYACAVYIVNYISKG FT QKGMSELLREACTEARQGNKTIKQQVRDIGSKFLNNVEISAQEAVYIVLQL FT PMRKSSRQIIFINTSPPNERVDLLKPMDNINEMDDDSEEIYTSGLLKRYSK FT RPLKLENITLADWAAWYDCAGKPYVKQTNQVDVDGLPLENFVDDNLNDDDD FT TEAQKTPRSKTKKRAKARIIRSVWFNKEAEPEKHYRELLMLFTPWRNEETD FT ILGTFSSYEERYMLLANVINEQMKQYAVCNEDFNEIQQDMNRLEDRFDEIA FT PCTQNLEQQDRAEGDQDLHPDFTGNYNLSDDLGIPSVDNTETLIMNELPDD FT EYRCMVQTLNKEQKEFFYHVLHLIKTSGEAFYCFLSGGAGVGKSHVTKALY FT QAALKYYNTRPGVNFAETKILMLAPTGKAAYNIKGNTIHSALAVPACQSLK FT NYKKLDSSRLNTLRCQIGGLKLIFVDEISMVGNTMFNVQFNNRLKDIKGSS FT LPFGGVSIVAIGDLFQLQPVMDGYIFKDMDNDEYGVLAPNVWQELFKMFEL FT KEIMRQRESKDFAELLNRLREGNHTKEDIIKLKERILNHTSAQYPKDAPHL FT FIQNAKVNDFNYKAHNALQGPKYSIKAHDTVIGTDSEELRDKILKQIPKDP FT RKTKQLHSVLHLAIGERTEISLNTRNDDGMTNGAGSVIKFMQIHKTDKPSG FT IIWVQFDHADVGQKTRHDNRQLYVNDIEPTWTPIKPISTQFAVGRTRSVHV FT MRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVTTID FT GLYITDLCESKIAVNTDVQTEMHRLRTEGKLSLSVSPIYEAPQASIKICFL FT NARSLHKHIDDIRHDLNYSSTDVNIFSETRFFQHENDDSYLLDDKNYTLFR FT NDGTPRQNVRPYGGTAVYSRLDYYPGYPFCSNIHGVEITILRFMIIPHITI FT VGVYSSPTVSITELCNAMKETLDSLPTQINIFIGDFNVNWFSESRRASLYN FT FFITQNCYRQLVSCSTTDSKTCIDHIYTNLPEVQTSFQILETYFSDHKAIC FT VLINSFIN" FT CDS 7928..8977 FT /product="Helitron-1_NV_2p" FT /note="ssDNA-binding protein (RPA70-like)." FT /translation="MTKISSILSDVQLEGFVHSLSPVKHAKKNRKPYFDCL FT VQTGEAEKVRAVCYDPQLRKNLLEPYQNKSPIKITATKRMASTSTSEEFRM FT TKKSKITSAAPEFSYNSQVVSSIVTVQEALSAPEYKAVDIVAKVVTKNHEN FT QLIIKQGQQLKKSDCIIGDEHSTIKLTLWEDLIDRVECGKTYTFKNVRIRV FT FDDVKYLSTNTSTSIEPADRQIHDINLTSEQFAENIIEGRFIGANVKAANS FT CVVCNTTLNQDDSEDDMITCPLPTCQTTMLFSECQTKLVCNLTVKKTDGKM FT QMYTCFNDGLQSFLISINKGDTRIDDLSPKELNKLFLTAGTKQLIVDNSTS FT VIHQVLF" XX SQ Sequence 9691 BP; 3572 A; 1589 C; 1700 G; 2830 T; 0 other; tttttgtgac gaaaggcctt atggggcctc tcgtcactat gccatcggtt tgagtgagtg 60 aaagaaagag ttgtaaacaa tagaatttca cttgaagcag gcgttcctag cggtcattca 120 tcgaacacgt gatcgtcgtc gtagatgtcg ctggcgaaga gggatcggat tgatttcgga 180 ttacgacgtt gttttgaatt atagtccacg agcaaaaaat gattggagtc aaacatgtgc 240 tttctcttcg cacttctcgt ttgatttcac gagctcttgt gaaggtgagt tgatttaata 300 cttcttttac aatgtattct atcccttttg tgtttagtac taggcacaac cttttatgca 360 tttgtcatgt tggtatttct aaagaatatt tcagattttg gggtgcttta tgtggtttgt 420 ttgccaacaa aagctcgatt gcatcgcttg ccttattaca caagaccagt ccttatggcc 480 gtatggtgtc cttcaattcc cttcggggaa ccaataaacc cagaaatggg gctcaaaatc 540 tccttcggga gagcatagaa ttccttcggg aagcaaacaa acccagaaat ggggctcaaa 600 atgtgcttcg gcacactgaa tattcccttc ggggaactag taatcacagc aatgtgatct 660 taactgtgct tcggcacact gaaaatttcc ttcgggaaac taataatcac agcaatgtga 720 ctgaaaggca ctataatggc aaatattgtg gaaaccaatt tgtgaacaaa agtattttcg 780 ggatacctgt gtacatgttg ctgtatttgt cggataaaac agggcaaaca aatcacattt 840 ttagcactgt atataatgat cgaagtaatc ttgttgacga attcacctca aaaactagta 900 ataacagtat aacaaatgca tttgagaaaa ctatgcctag tattgaaaac aaacatgata 960 ataataaaca tgcatcttgt ccatctatca agatctccaa gtgtatagaa aatcatagac 1020 attctcgaat atgttcaaag caactaaatc acaaatgtag agatagagaa ccatctagaa 1080 tatccctaaa aaaagttatg agattgctca gatatagaaa gttaagaaaa agacacaaaa 1140 agatgattat taagggcaca cctgtttcat ctgtttttta cagaattgct acaaactata 1200 actattggaa attgaaatac attaacagac ttaatagttt ctatagctcc ttttttagag 1260 caacttgtaa aacatcagtg aggtataatg gatgtaaaca aactctttta ttgtctgggg 1320 acattgaatt gaatcctggt cctgtaactg ataataataa tattgaagat atatgtttat 1380 atagtaatgg tgactttacg ttaagatacc gaatgcttcg acatggttta acaccactag 1440 atgttggtgg aggaggtgat tgctttttca aatcagtatc acatcagcta tatggtaatt 1500 caaataaaca tgcagaaatt agagctttag gagtgagata tttaaaggac aatcctgaac 1560 gatttattga aagtatcata gattcatctt ggtcacagta tttaactaat atgtctctac 1620 aaggaacatg ggccaatcat attataatac aggctgttgc tgatgcaatg agtttaaaga 1680 ttcatattat agaatcagat tcaaatatta gggaagtcac attagttgag ccagcaaata 1740 caataataaa taatattaga acaatataca taggacatat tggtcaagtg cactacgtat 1800 caacatgttc tgtttcacat caacaaagtt cgaacaatat tgacagggaa aatacaattt 1860 cgagtcgtcc agaaaaaaga aagcaagcaa gtacaagcaa aagttctaat tcaaatgaaa 1920 caaaaaagca agacagggct acctacatta ggcaatacat gaaggaatac aggcaatcca 1980 aacaaaataa tacttcacca gaaaaaaaat caaagagaaa tgaataccaa agaaattata 2040 gagaaatgaa tgcatcacca gaaaagaaat taaagtgtaa tgaataccta agaaaatata 2100 gagaaattaa ttcatcacca gaaaagaaat taaagtgtaa tgaataccta agaaaatata 2160 gagaaatgaa tgcatcacca gaaaaaaaat caaagagaaa tgaataccaa agaaaaaata 2220 gagaaatgaa tgcatcaccg gaaaagaaat caaagcgtaa tgaataccaa agaaaatata 2280 gagctaactc atccattgaa tttgcaataa agcggttcca tgaaatagta aaccaaggcc 2340 ctctgtatat ttgtatatgt tgtgatcaac tatggtataa acatagtgtg agtagtacta 2400 ctaagctgag acaatcaaat cctgatgttg tgaaatatct atcaaataag ataagtgttg 2460 gtaacaaaga atgggtttgt agaacatgct ctaattattt gcaaaaaaat aaagtcccac 2520 catgtgctgt agcgaatggt atggcatttc cagataaacc agatttcttt gatctcaatg 2580 aactagaatg tagattatta gctccaagaa ttgcatttca aaaattaatg caggcaccta 2640 gggggagaca gcttaagata catggaaata ttgttaatgt acctgctgat gtgactcata 2700 cagttagtat attaccacga ttgcaaaacc aaactgctac aattaaagtt aatttaaagc 2760 ggatgctgaa atataagagt tctgcactgt cactaaatgt aagaccatat aaagtacttc 2820 aagcagcaaa ttggcttata acacatagta gtttatatag agatgaaggt atagtactga 2880 ataatgactg gatcaatcaa tacaacagag ctgataatga tgaaattaat gagaaggtac 2940 agtcagatac aatagatgaa actgatgaca atgatattga ttctgaaggg ctagaccaaa 3000 atgaatcaca tgaagatgaa gcagaaacaa ttgctggtgt tactgatact atgtttacag 3060 caactgactt tttagaagat aatgaaaggc aaaacatatt aaatattgct ccaggtgaag 3120 ggaatagacc attaagtgtt tttagagaca aatattgtga agagttagca taccctggaa 3180 tatttcttgg acaaccacga attgacaata aacaaagatt agtcgatatt aactatagtg 3240 atatatgtaa atcagagttg agacggtctg acagacgagc tgcagtgtgc attgaaaata 3300 tattttacaa aacaaaaaag ttgcaaatga aaattctctt aggaaaatca catatagctc 3360 tgagaaaatg taagggaaac aacaaaaata ttactgctgg acaacttaaa cagcaaggat 3420 caatagacag attgattcgt catgatgatg gatacaaatt tttaaatgca ttgagaggtt 3480 cacctccata ctttgaaaaa gctaaaaaag atctgtttgc aatgattagg cagttaggtc 3540 ctgctacact attttgtagt ttctcatcag ctgaaacaca atggatgcac ctacttagaa 3600 tacttggtca gcttgtagac aataaggaat acactgatga acaaatagac aattttaatt 3660 gggatgacag gtgtcgctta attcagagtg accctgtgac atgtgcaaga cactttgatt 3720 atcaagttaa tcaattttta acaaacttct tgttcagttc tgctcaacct ttaggtaaaa 3780 tatctgactg gttttaccgt gtagaatatc agcaaagagg gtctcctcat atacatatgc 3840 tgatgtggct tgaagatgca ccacaatttc aaatagatag tgatgaagat gtcacatcat 3900 ttattgataa gataataact tgccaaaagc cagtagacaa tgctgattta ctagtcttgg 3960 ttaatagaca ggtacataga cattcgcata catgccgtaa aaatacaagt agcaaatgta 4020 gatttaacta tccacagcca ccaatgaagc aaactatgat aatatatcct ctagatgagg 4080 atacacccga aaaggaaata aaaatatata gagataattg gaaggcaatt caagtgtatc 4140 tagatgaaag caaagaaggt gaagatatta catttgacca gttactcgtg aaccttaata 4200 tcactaaaca aaactattta cttgctgtaa gttcatcgat taacacacct actgtgtttc 4260 tgaaaagaaa tcccaatgaa ttacgcataa ataattacaa ccctgattgt ctctctgcat 4320 ggagagctaa catggatata cagtttgtct tagatgtcta tgcatgtgct gtgtacatag 4380 tgaattatat atcaaaaggc cagaaaggca tgagtgaact tttaagagag gcatgtactg 4440 aagctaggca aggtaataaa acaataaaac aacaagtaag ggatattgga agtaagttcc 4500 tcaataatgt tgagataagt gcacaagaag cagtgtacat tgtgttacag cttccaatga 4560 gaaaatcatc tagacagata atatttataa atacatcacc acctaatgaa agagttgacc 4620 tattaaaacc aatggataat attaatgaaa tggatgatga ctctgaagaa atctatacca 4680 gtggtttact caaaagatat tcaaagcgcc ctctaaaact agaaaatatc acacttgcag 4740 actgggcagc atggtatgat tgtgctggaa agccttatgt aaaacaaact aatcaagttg 4800 atgttgatgg tcttccgtta gagaattttg ttgatgataa tctaaatgat gatgatgata 4860 cagaagctca gaaaacacca cgtagcaaaa ctaaaaaacg agcaaaggct aggataatta 4920 gaagtgtgtg gtttaataag gaagctgagc cggaaaaaca ttatcgtgaa cttctaatgc 4980 tatttactcc atggcgaaat gaagaaactg atattcttgg tacattttca tcttatgaag 5040 aacgctatat gttacttgcc aatgtcatca atgaacaaat gaaacaatat gcagtttgca 5100 atgaggactt taatgaaata caacaagaca tgaatagatt agaggataga tttgatgaga 5160 tagcaccttg tactcaaaat cttgaacaac aagaccgagc tgaaggtgat caagacttac 5220 atcctgactt cactggaaac tataatctat cagatgattt aggaatacca tcagttgata 5280 atactgaaac acttattatg aatgaactgc cagatgatga atatagatgt atggtacaga 5340 cgttgaataa agagcaaaaa gaatttttct atcatgtact acatttaata aaaacttctg 5400 gtgaggcatt ttactgcttt ctaagtggtg gtgcaggtgt gggtaaatca catgtcacta 5460 aagccttata ccaagctgct ttgaaatatt ataacaccag acctggcgtt aattttgctg 5520 aaacaaaaat acttatgtta gcacccacag ggaaagcagc atataatata aagggcaata 5580 ccattcatag tgctttagca gtaccagcct gtcagtcatt aaagaactat aagaaacttg 5640 attcaagtag gcttaataca ttaagatgtc aaataggtgg acttaagttg atatttgtag 5700 atgaaatatc tatggttggt aatactatgt ttaatgtcca attcaataat agacttaaag 5760 acatcaaagg cagctcgcta ccatttggcg gtgttagtat tgttgctata ggagatttgt 5820 ttcaattaca acctgtaatg gatggttata tatttaaaga catggataat gatgaatatg 5880 gtgttcttgc acctaatgta tggcaagaac ttttcaaaat gtttgaactt aaagaaatca 5940 tgcgacagag ggaaagcaaa gactttgctg aattattgaa tagattaaga gagggaaatc 6000 atactaaaga ggatataatc aaattaaagg aaagaattct taaccacact agtgctcagt 6060 atcccaaaga tgcacctcat ttatttattc aaaatgctaa agtcaatgac ttcaactata 6120 aagctcataa tgctcttcag ggtccaaaat actctattaa agcacatgac actgtcattg 6180 gaacagattc ggaagaactt agagacaaaa tattaaagca aatacctaaa gatcctagaa 6240 aaacaaaaca actgcattct gttttgcatt tggcaattgg tgaaagaaca gagatatcac 6300 taaacactag aaatgatgat ggtatgacca atggtgctgg tagtgtcata aaatttatgc 6360 aaatacataa aacagacaaa ccatcaggta ttatatgggt acagtttgat catgctgatg 6420 ttggtcaaaa aaccaggcat gataatagac agctatatgt caatgatatt gaaccaacat 6480 ggacaccaat caaacctatt agcactcaat ttgctgtagg tagaacaaga tctgtacacg 6540 tgatgagaaa acaatttcca cttagacctg ctgctgctaa aacaatacat agatcacagg 6600 gtgatactga aagtagaatt gtagtaaatt ttgaaaccaa aagagccatt cctcatatac 6660 attatgtagg attaagtaga gtaacaacta tagatggtct atatataact gacttatgtg 6720 aaagcaaaat agctgttaat actgacgtcc aaactgaaat gcatcgattg agaactgaag 6780 gaaaactgtc actttctgtt agtcccatat atgaagcacc tcaagctagt attaaaatct 6840 gttttctcaa tgcaagatca ttgcacaagc atatagatga catacgtcat gacttaaatt 6900 actcaagcac tgatgtaaat attttttcag aaacaagatt ttttcagcat gaaaatgatg 6960 attcatatct attagatgat aaaaactata cattgttcag aaatgatggt acaccaagac 7020 aaaatgtaag gccatatgga ggtacagcag tgtatagccg tcttgactat tacccaggat 7080 atccattttg tagtaatata catggtgtag aaataactat tttgaggttt atgatcatac 7140 ctcatattac aatagtggga gtatacagct caccaacagt atcaataaca gaattatgta 7200 atgctatgaa agagacacta gactctctac caacacaaat taacattttt attggtgatt 7260 tcaatgtgaa ctggttcagt gaatcacgcc gtgcatcact ttataacttt tttataacac 7320 aaaattgtta tagacagcta gtttcatgta gtacaacaga cagtaaaacc tgtattgacc 7380 acatctacac taatttacct gaagtgcaaa caagctttca gattttggag acatattttt 7440 ctgatcataa agccatttgt gtattgataa acagcttcat taactaaagg caaaaattga 7500 taatggagtc tataaataca gtgcaaacaa tttacattac acactagttt atttaacatt 7560 agcacatact gattatgttc ttataagact accggtattc tgaataatta ggtacttatt 7620 ataaatatta tgtattagaa acacagttaa atacactcaa tagtgcaatt gtttagatac 7680 actttatttc attacagaat accaacatga gcactcctac aacaaacccg taagtacttg 7740 tatcttaatt tcatttctat ttttcgtttc catcttatct taggtaatat ctttgtactc 7800 tttgctaata ttattacata acatctcctt ttaattgcag acaacaacaa ctcaacaaag 7860 ctgacgactc accaggtaag atatatattt ctttgttgtg taaagcataa taaacaatgt 7920 gtttgcaatg actaaaataa gttctattct ttcagatgtt caactagagg gttttgttca 7980 tagcctaagt cctgttaagc atgcgaaaaa aaacagaaaa ccatactttg actgtcttgt 8040 ccaaactgga gaagctgaaa aggtccgtgc cgtgtgctat gacccacagc taagaaaaaa 8100 tctccttgaa ccataccaaa ataaatcacc aataaaaatc acagccacca aaagaatggc 8160 tagcaccagt acctctgaag agttcagaat gacgaaaaaa tcaaagataa catcagcagc 8220 gccagaattc tcatataact cccaagttgt ctcatctatt gtgacggtgc aagaagcgtt 8280 atcagcgcca gaatacaagg cagttgacat tgttgctaag gtggtaacaa agaatcacga 8340 aaatcaattg atcattaaac aaggtcaaca gctaaagaaa tcagactgta tcattggtga 8400 tgagcatagc acaataaaac tcactctctg ggaagacctc attgacagag tagaatgtgg 8460 aaaaacgtac acatttaaga atgttagaat cagagtattt gatgacgtta aatatctatc 8520 tacaaatact tcaacatcaa ttgaaccagc tgatcgacaa atccatgaca taaacttaac 8580 atctgagcaa tttgctgaaa atattatcga gggacggttt atcggtgcca atgtgaaagc 8640 agcaaactct tgtgttgtat gcaacaccac gctaaatcaa gatgatagtg aagatgacat 8700 gataacatgt cccctgccaa cttgccaaac aactatgctc ttttcagaat gccaaacaaa 8760 actggtttgc aacttaactg tcaagaaaac tgatggcaaa atgcagatgt acacatgctt 8820 taatgatggc ctgcaaagtt ttctcatctc catcaacaaa ggcgacacta gaatagatga 8880 cttatcacct aaagaactga acaagctttt cttaactgct ggaactaagc aacttattgt 8940 ggataattca acctctgtca ttcatcaggt tctcttttag acctcaaaac acgtcgaagg 9000 tataaacact acagaaaaac atttatttgc atattttgag tttttgttga actacaggca 9060 taatgtctga tattctctgc ttttcttgta taatacagag aaattcattc aaaaaagtta 9120 aatttagagt tcgtttagtt gtaaaactgg aaccagcatt attgttcttg ttcatattgt 9180 atctagatga ctgtgtacaa tggtcttgct gatattcaac tcatattgat catattgtat 9240 aagccaaaat ctagttattg gtcaaccaag accatccatg atatattgtt tctaatcaac 9300 aaacatttca caattatatt acaaaataga gtgaaagtac agacaaatat tattttaaag 9360 ggattttatt gaatatattt ttatataaga tgttactgtt catattataa ctatatcaat 9420 atttttgaaa agccacaaaa attgtattca cgttatatat ttatattgaa gtggaaataa 9480 aatgtttata ttttgcaaaa ttgaacattt ttatggtgtt tagccacaca acctaatttt 9540 tcacatcttt ctgtttctta tgcttacact gtaaattcta acttcttcag aaacaattca 9600 ctatgctaag acctacacta aagtctctac tctttacgtt tcttatgcat tataccttga 9660 gtcacatgca gtctttgact gcctattttt t 9691 // ID TE-27_NV repbase; DNA; NEM; 581 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-27_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP375; TE-27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-581 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-581 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-581 RA Kapitonov V. and Jurka J.; RT "A family of TE-27_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 581 BP; 173 A; 125 C; 111 G; 171 T; 1 other; ttttggctaa acttcagaat acccgtccac attttaaggc ctctaaattt catcggtccg 60 cggtccgcag tccagaacta cttaatataa agtatccatc attgcacaat taatttataa 120 tactactcaa tataaaatat ccatcattgc acaattaaat tataatcgga tatgttatgt 180 tggttcgcgg tccgcagtca aagactacta attcatccat aatgcgaaat tggttggtcc 240 gcggtctata aatatgcaaa gacggcttca ctgcggaccg cggaccacgg tagcagtgac 300 ttagattact tagacttatt atttgatact tcgttctata aatatgcaaa gacggcttca 360 cagcggactg cggaccacgg tagcagtgac ttagattact tagacttatt atttgatact 420 tcgttctata aatatgcaaa gacggcttca ctgcggaccg cggaccacgg tagcagtgac 480 ttagattact tagacttatt atttgatact tcgttctata aatatgcaaa gacggcttca 540 cwgcggaccg cggaccacgg tagcagtgac ttagatcaat a 581 // ID RTEX-6_NV repbase; DNA; NEM; 2049 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE RTEX-6_NV non-LTR retrotransposon - incomplete consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; NVREP427; KW RTEX-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1239-2049 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1232-2049 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2049 RA Kapitonov V. and Jurka J.; RT "A family of RTEX-6_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~97% identical to the consensus. There is not enough CC sequence data to reconstruct reliably the 5'-terminal portion of CC this retrotransposon. Its 800-bp 3'-terminus was originally CC reported as the unclassified NVREP427 transposable element [1,2]. XX SQ Sequence 2049 BP; 761 A; 386 C; 370 G; 529 T; 3 other; tattgataat atmctgaatg aattcctstc aataggaaag gagcatttaa aaaagcactt 60 tcaagtgtta ttcaacagaa tcctgactag cggaaaatat cccgccctat ggaacgtagg 120 attaattgtc cctatttata aaaaggagga cccagcaaaa gcagaaaact acaggggcat 180 tacactactc tcgtcactcg ggaaactatt cacatcgatt ctaaatagaa gactatctga 240 tttccttatt caagagggaa taattaagga agaacaagga ggtttccgga aaaaccacgg 300 aaccatcgat agcattttta tcttgaaatc aataatagat aaatatgtaa aaagcgaacc 360 taaaaagaaa cgtaatttac tttttacttg tttcatagat tttcaaaagg cgtttgattg 420 cattccgcgt cacaaactcc tcgataaact aaaaaatgtt ggagttaacg gcaagtttta 480 tgaagtcgtt tcgtcgatgt actcaaatga taaatcggcc gtgaaaatca ataatttatt 540 aacaccttca ttcaagtgcc ttgtaggtgt gaaacagggc tgtatgctka gcccaacgct 600 gttcaattta tatgtacacg accttcctga gcagctagac acttgcaaca tagacgatat 660 taatatcaac ggcaaacctc taagttgttt gctttatgca gatgatcttg tcattttctc 720 aaaatcggaa aaaggactcc aaaactatct cgacaaggtc caacattttt gcaagcaaac 780 agacctgaag gttaatatta agaaaacaaa aattctcatt ttcaacaaca acggtaaaac 840 aatgaacaac atctcgtttt acatcaatca tgtcagactt gaaaatgtca agtcatacaa 900 atacctcgga cttcatttat cggcatttgg aaattttgct ctggcaaaac aagagctcaa 960 aaagacagcc ctgaaagcac tctacaaatt gagaaaagaa ttaggagact gctttagagc 1020 tgatcctaaa ctcacaatga agctatttga tacgctgata gcccccattc tactgtatgg 1080 gagtgaggtt tggggtatgg gaaccgctac aaatgaaaaa gagccaatag aacaagttca 1140 tataaagttc tgtaaaatgt tgctcggcgt tggtaaaggt gcaagtaata acgcatgcag 1200 aggcgaactt ggaaggcttc ccatgagaac aaaggcaaaa atgcgatctt taaaattatg 1260 gctgaaatta tctaatgtaa acgaaacgca gaaactttcg aaaactgcat acaactggat 1320 taaggaggcg gacaacaaag ccttctggag ttataaaata aaagactggc tcaatcgaaa 1380 tgggctggga gatatatggg aatgccaaaa tctaataact gataatttta atgcaattga 1440 aaagttaata aaacaaagaa tacaagacgt tgagttacag acatggttcg gcgacataca 1500 tgatgacata agaaaagaat ccaaccaaca aaacaaactt agaacctata gaatattcaa 1560 aacaacatac gaatttgaaa catatatcag ccaggtcacc aatacaaacc acagaatcgc 1620 gctgacaaaa ctgcgaatta gcaatcataa gctcgaaatc gaagctgcgc gttatcgaaa 1680 accttacaaa agagcaaatg agaggatatg ccctatttgc gctaccggtg gggtggagga 1740 tgaggttcat ttcctgacaa gatgccccaa attttgtgat gaaagagccg aacttttcac 1800 aaacatacaa atggcaacaa acattaatgt taatcgaatg tcaggaaatg acctcttcct 1860 cctcctcatt aatccaccta caaaacttca aaaaataata gcaaaattta ttgccaaaat 1920 cactgcgtta cgaagcacat taacgttgta gtccttcatc gcatgtgaaa ctatcttaat 1980 tttatttgga actcatccca tgtacacaat ctgtataagg accaaataaa aagtatgtat 2040 gtatgtatg 2049 // ID Kolobok-N10_NV repbase; DNA; NEM; 246 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-1N_NV; Kolobok-N10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-246 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 359-359 (2007). XX DR [1] (Consensus) XX CC Kolobok-N10_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N10_NV transposon CC is characterized by 28-bp TIRs and TTAA target site duplications. CC This family is composed of several thousand elements: while the CC youngest elements are less than 3% divergent from the consensus CC sequence, the oldest elements are >20% divergent from the CC consensus. XX SQ Sequence 246 BP; 81 A; 56 C; 42 G; 67 T; 0 other; agccgcattg tcaccagttt acttccggag gtccgacgga aacctcaacc gttaaaagac 60 aaaagaatct attagaatcc gagatattta acaggccatc cgctctaaat tatcaatcac 120 atcctcaaag aaacttccaa tagacacact gctttcaata ttttgaaata tttttcgcgt 180 tttccgttaa aaatcatcgg agattgttac gtaatcgacc ggaagtaaac tggtgacaat 240 gcggct 246 // ID Harbinger-1_NV repbase; DNA; NEM; 5945 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5945 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 156-156 (2007). XX DR [1] (Consensus) XX CC Harbinger-1_NV is a consensus sequence of a family of autonomous CC Harbinger transposons that were active in the Nematostella CC vectensis genome in a last few million years. The Harbinger-1_NV CC transposon is characterized by 27-bp terminal inverted repeats, CC 3-bp target site duplications, and it encodes two proteins: (i) CC the 344-aa Harbinger-1_NV1p transposase and (ii) the 153-aa CC Harbinger-1_NV2p Myb-like DNA-binding protein. XX FH Key Location/Qualifiers FT CDS 5639..5181 FT /product="Harbinger-1_NV_2p" FT /translation="MSQNSTVEDTKPDKRKRKPNFSQRELNVITESVEAKK FT DILQSKFTNNLTNQMKQKVWLDITAKVNAVGVAYRTVEEVRVKWKALFSVA FT KKEYSVAKKGKRQTGGGPPPKEPSEISKQIVEVYDNTPGFSGIEGGFETGI FT ICVLNIIHIHDTVM" FT CDS join(203..752,1082..1563) FT /product="Harbinger-1_NV_1p" FT /translation="MADMLLFGNLAGRPAQPRRFRHFRTELDDYYNDKNVK FT SRFRFNSDSIRYIADLLSPQLARSTKRNHALSPTLQVLVALRYFASGNFLE FT VIGDTFGLPKSTVSRCITDVSKALVANKEEFIAWPSDEEKRQIKEAFFAKK FT GFPGVIGCIDGTHVRIQGPPRNENDFVNRKGFHSINVQAICDNKGLFTNVV FT AKWPGNAHDSFIFQDSGIHDKLQLEHKSVEDGVLIGDSGYGCKPFLMTPFP FT HPETPKQEAYNEALGKTRVKIEQTFGIFKRRFHLMHTEIRVDPSKATLLIG FT ACAVLHNIAIIRNDVYNPPRGVVFEDDQPEVPPYEGPEDGLRIREYICQNY FT F" XX SQ Sequence 5945 BP; 1838 A; 1116 C; 1131 G; 1860 T; 0 other; gggccggttc ctgaaaagag gattagcgct aatccaggca taaatctgct ctaatctggg 60 cataaattta aaccaggatt aaatcgcgtt cctgaaagcg ggaatagcgc taatctaggc 120 ataaaatcgg cataacttta taccacctag cgaggagggt atagctcgct aatccgggaa 180 taaaagtcga gcaacaaaca aaatggcgga catgttattg tttggtaatc ttgcaggaag 240 gcctgctcaa ccgcgtcggt ttcgtcattt ccgcacagaa ttagatgatt actataatga 300 taaaaatgta aagtcgaggt tccgtttcaa tagcgattct attcgctata ttgcggactt 360 actttcacca caattagcga ggagcacaaa gcgaaaccat gcactgagtc cgaccttgca 420 agttcttgtt gctcttcggt actttgcctc aggtaatttt cttgaggtta taggggacac 480 atttggactt ccaaagtcta cagtatcacg gtgtattact gacgtttcaa aagcacttgt 540 tgccaacaaa gaagaattca ttgcttggcc tagcgacgag gaaaaaagac aaatcaaaga 600 ggcgtttttc gcaaaaaaag ggtttcctgg agtgataggc tgcatcgacg gcactcatgt 660 tcgcattcaa ggacctccca ggaacgagaa cgacttcgta aataggaaag gattccattc 720 aatcaacgtt caagccattt gtgacaacaa aggtgcgtaa agattcataa taaacaaggg 780 tagtggttgt ggggggtggg ggtgggacca attagtgaac tttttggggt atatcagccc 840 cctgtaagta aatcagatcc acattctccc taataggtcc accctttcta aattacgaac 900 tgaattttct caaacaaata atcacagcta ctgtatttta tactgtatta ttaattatcc 960 acgatcaaag aatactgtca aatgaactat cttttacaat atttgttttc tgtcatctca 1020 tcaaacaaat gaaaaatatc ttttgtaata aatatttttt aatttttttt tccactctta 1080 gggcttttca ccaatgttgt agccaaatgg cctggaaatg cccatgattc tttcattttt 1140 caagacagtg gaatacacga caagctgcag ctggagcaca agagcgtcga agatggtgtt 1200 cttattggtg atagtgggta tggatgcaag ccctttctaa tgaccccttt ccctcaccct 1260 gaaaccccaa aacaagaggc ctacaatgaa gcactgggaa agacaagggt gaagattgaa 1320 cagacatttg gcatatttaa gcggagattc catctcatgc atacagagat cagggtggat 1380 ccctcaaagg caaccctgct aataggggct tgtgcggttt tgcacaacat tgctattata 1440 agaaatgatg tttataatcc tccccgtggg gttgtctttg aggatgatca gccagaggta 1500 cccccctatg agggaccaga ggatgggcta aggatcaggg agtacatttg ccagaattat 1560 ttttaatatt tttttaatgt attcaatact ttattagaat gatggactac ttttacaagt 1620 ttgtatgtca aagaatgctt cttataataa aaaaaatacc catatgactg aaagattggg 1680 tactataaga ttttaaagat tgtaaattta agactataag attgtaaatt tctaaagaac 1740 atgaattaca atggagggaa attaacaaaa agaccatttt tccttttctt ttcaaaaaaa 1800 agaaacagac aaaatataaa ttagataaaa cttaggcgac acctgcaaat ttacagtcaa 1860 tttatggcgt taggcttaat acattattaa taaaagatga aattctatct gcaaattcca 1920 tcaaaagctt tgaaaaaaga ttgcattttc aaatgcaata ctcactaagg attcttgccg 1980 gcatgtgtaa gggagttgga agttagggac catggtaagc tgtactatcg tgtcaaaact 2040 ttaaatactg taaaactgct gcaaatgtgt gcaagtccaa aaatactagg ttcaaacatc 2100 ccaagaaatt ggctatcaat aatcgataaa aaaggcaaca cttctttgtc gaaatagcat 2160 agtgttctga tcatgatttt tcaccaagag taatggcaaa ttaatattca ttgattttca 2220 aacaattgaa ttttgaatta cttttaggat gttgctcaga ttagagctaa tctaaaacca 2280 aaatcaaact cactttgagt taacagggag tttgaattat cctagttcaa atgtcagtag 2340 caaattcaca gctggcccag gaatgactct gtaaggttac cttatctttt gattagattt 2400 gagtacagac tctactccct aaaccctaat cttccagttg tcacggctct gagcatgtga 2460 cgtcatgtgc gctacggcgg ctgtctttag attttgtttg gaagtgtaaa aggcatgtat 2520 caagcaaaga gcagatattt tgactgaaca tgtgctgtgg gcatttttgt ggcaaaatat 2580 ggctttcgag taaaagataa gcttgctacc acttcaaacc ctaatttctc actgtgtcat 2640 gaaggtattt ggctctcaaa ttattctaga gtatacattg agcgtttgca ttgactttgc 2700 ctgcgatttg aacatttatg ataactttta tctgcaccga tcatgacaca aagtaagccc 2760 gaagagttct aaatagattc aatgctagcc aaaaaatatg ttttaaaatg acttcagata 2820 ttcttgttga ctgtacagtt tacgtataat tgtcattgtt tttgaagtat tttttaaggc 2880 ttttattcat tatttttaaa tggaagatgt catcctgtga agtgtcttgt agacttcact 2940 ctcttggaga ctttacttta tatttacact tgcttgtttg attttcattg ccatgccatt 3000 ctgactagat ccgtcaacat tattttaaaa cttaaaaaaa gaaatccaga ttacaatttt 3060 cactagccga aagcaatgca ctgaatctct ttgaaatcca aacatggcta acttgcccga 3120 aatagcctca agcatgacat cattgctcag agcctatatc ccaaacccta agaatactat 3180 tccaaacagc ttgtaaaaaa atctaaagag ttaaaggtct tgagaattag acattttcaa 3240 gacccttaac tcttgagcta atttctcctt cttcattatt atatactctt tctgcagttg 3300 gagagtttca cactgcaggg taagtaaatc atctgcagtg taccttttct ttctcttatt 3360 actcttaggg acaggggctt cagcaaggac agcaatagtc ggctcttcta caatatcatc 3420 aaatgcaatt gtggggaact catcacccac tacatcttct gatgtttcca gcagttcttg 3480 gtagatattt tctcctacag taataaagta agacatcaga gtagcacaca cattgaattt 3540 agagagaaat gcatttacag cgtcaccagt aaaaccgtga aaagcagaaa tgcatggaat 3600 gcattttttt ttcaacaaat agtagtatga gtctgttgaa ttctcacttc tgattcatca 3660 caagacaata aacattctgc tcaggcgttc cagccttact ggttgtgctt taaatcaagt 3720 cagacaacag caacaaggaa aatcatgaat acctgtctgc cggtagttat ttgctttatt 3780 catgcccggt gtgttcaatc gatagaacca ataatctaca ttaattgatt ctagtcgaca 3840 aaattaacta aatgcatcgg caatcaatca taatcaatag caaaaaaatt tggaggtcaa 3900 ttgatattta tcgatttttc aattgagacg gtcaagaaat attgatttct ttattgatga 3960 cgtttgaata aactacacat tccatacaga caaaatacga cacagcattc ttaaaaaaag 4020 gtctttgtag aaaaaagagt gtgtaaagat gtatttctct taggaatcac cattgcacag 4080 tttccctcca gcaattctag ctacgtgcct ggattgtcaa atatttagtg cttcatgttt 4140 ttggaattcc gaagatcaca ggttttgttg gcaagactat aggtgcaaga agggaagttc 4200 agtgcttcac tatatgctta tataattagg aaactccttg caaaatgcga aatcagggtg 4260 agaaaatgtt tcatataata cagcaagtga aagggtttct caagtgaagc tttcgatttg 4320 tggcacaatt agaagtctat cttttgaaaa ttcctgatgt aatcgatata tttgacagac 4380 taatgcaggg ttgtttgagt ataaattatt atcgaacttc caatccaatc gatatcaatt 4440 cattgaggtt atcaaccaat ttcaatttaa ggactggtct tttgataaga tatgtttgga 4500 aatatcgcct gaagttgagg ccttcatgtc aaaatacaaa aagggacttc atataaggat 4560 agctcaaact acatgattgg cattaactta tctaaacact acaatcaaca gcaaaactgg 4620 tagaacaaga gaaattaatc ttcatttttt ttcgaaggtg tgtcgttatg tcgttatgta 4680 aggttatgta agagtagcat gacagtaagt catgcttcgg tatgtagaat tatgtaatat 4740 ctattgttag tagttgacat aagtcaacag tgttctaaaa caaacaccca aatgtttatc 4800 agttgttgta tttgattata gttatgctga gaattaaaag gaaaatattt ttcgttcgga 4860 cgaactggtg aggtagaatg aaacgttcat ttcacagtag agaaaaccac ttgttactgt 4920 gttttgccaa aaagttccta tatccctgca taaacagatg acttcactta atgcttttaa 4980 ggattataat acgtgttcaa ctattagcag aggaatactt atctttcggg acgtgtgtct 5040 tacagagaca ggcgatatat tagattttct ttgtgatgtt tggagatttt gcttcgttct 5100 acccccgttt gtaatgttat acaaacatgg ctgtgtgaaa ttccgacagg cgttgcgcgt 5160 agagtaacgt gacataatca catgactgta tcatgaatat gaataatatt caaaacacaa 5220 ataatacctg tctcgaaccc tccttcgatc ccggagaacc ccggcgtgtt gtcataaacc 5280 tccactattt gcttgcttat ttcggagggc tccttcggcg gcggaccccc gccagtctgc 5340 cgctttccct tcttggcaac ggagtattct ttttttgcca cgctgaacag cgccttccat 5400 ttaaccctga cctcttccac agtgcggtaa gccacaccca cggcatttac ctttgcggtg 5460 atgtccaacc acactttctg cttcatttgg tttgtaaggt tgttagtaaa cttagactgc 5520 aatatgtctt ttttggcctc aacgctctcg gtgatgacgt ttaactctct ttgagaaaaa 5580 tttggctttc gctttcgctt gtctggtttt gtatcctcca cggtgctatt ttgtgacatt 5640 tttagttgtt tttttaagcg tgccttttgg aaattttccg aggaaatcaa cgtttgttta 5700 cacaggtttc ccgcaaataa aaagaaaaaa aacgcgcgcg cgttgccgta ttttcccgcc 5760 aaaactggtt ttccactcgc taatctaggg attaaacatt tatgctggga atagctattc 5820 ccggcaactt gtgctttcag gaaccgatat ttatgcccgg aatagctatg cctagcatag 5880 tggatttatg cctagaatag cgcttaatcc gggcataagc taatcctctt ttcaggaacc 5940 ggccc 5945 // ID Mariner-N6_NV repbase; DNA; NEM; 427 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Mariner-N6_NV non-autonomous DNA transposon - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW TA TSD; NVREP208; Mariner-N6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-427 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-427 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-427 RA Kapitonov V. and Jurka J.; RT "A family of Mariner-N6_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies of this transposon are 78-87% identical to the consensus CC sequence. Originally, this family was reported as the NVREP208 CC unclassified DNA transposon [1,2]. XX SQ Sequence 427 BP; 137 A; 69 C; 82 G; 139 T; 0 other; cagtaaacac ccgcgtataa gaacctagag attaagaacc tacaggctga aatttggcat 60 tttaagcacc cttttataag aacctaatca gcctggtggg gaagaatagg ttcttatttg 120 aaagatcact caaatgtttt gtcaaaattc tgatttacgg ttgataacaa gagagaaaag 180 atactttttc ataaatgttt ggtgcattgc atactgtagt taaatacaac atgggcttat 240 atgttgtgtt cagcattgat tgttattgtt gttaaagtca gcaagcattc tgactgtaga 300 ctgtttttgt atataagaac caattaagaa cctaaacagc ctgatttgtc aaaaggtacc 360 ccgatttata agaacctatt cagcctgatc ttgaaaattc taggttctta tacgcgggtg 420 tttactg 427 // ID DNA-3-9_NV repbase; DNA; NEM; 1569 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-3-9_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 3-bp TSD; KW NVREP474; DNA-3-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1569 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1569 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1569 RA Kapitonov V. and Jurka J.; RT "A family of DNA-3-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus. It was reported CC originally as the unclassified NVREP474 transposable element CC [1,2]. XX SQ Sequence 1569 BP; 498 A; 261 C; 263 G; 545 T; 2 other; aacagcacgt caggagaaaa tgccgttttg ccgtttagca agaaatggca agaatatacg 60 attttctcaa gactcgcctt aaaaatttgc taatttcact aaatatgaat cccccgtcct 120 tttacgttaa gaagtcaatc gataatttta cgattcgtgg cacaaatgat tatgtgttcc 180 gggatggaat gtctaaaaca tccatttctt atcatttatt gtatttataa agaagcgaaa 240 tagaaattac ctcgaatgac gtgtttcata aaagaaagca atgagtgttt tagctataac 300 cgataaaaat gtccatgtta accggaagat atgtcaaaat cttttatttg tcagtatctg 360 ttacatttaa aaaggagcga aacaacaatt gttgaatgta taaatttata ccgtccctga 420 gttcaaatag gaatgtataa atttatacat tcctttttga actccgggac tgtataaatt 480 tatacattcc tttttgaact ccgggactgt ataaatttat acattccttt ttgaactccg 540 ggactgtata aatttataca ttcctttttg aactcgggga ctgtataaat ttatacattc 600 ctttttgaac tcgggractg tataaattta tacattcctt tttgaactcg gggactgtat 660 aaatttatac attccttttt gaactcmggg actgtataaa tttatacatt cctttttgaa 720 ctccgggact gtataaattt atacattcct ttttgaactc ggggactgta taaatttata 780 cattcctttt tgaactcgga aactgtataa atttatacat tcctttttga actcagggac 840 tgtataaatt tatacattcc tttttgaact ccgggactgt ataaatttat acattccttt 900 ttgaactccg ggactgtata aatttataca ttcctatttg aactccggga ctgtttggga 960 ttgtataaat ttataccttc cctggaacta aagggtattt ttactctttt atagacaatt 1020 gttgtttcgc tcctttttac atgtaaaaag gcccaaaaaa tccaaagtct cctcaaaatt 1080 taggactccc gccaagaaaa gccttaggaa cacaaaatgt gttaagtgtc cttgaaatgc 1140 gggagtatct ttacttaatc gtgctttagt gttattttta ctgtatcttt aggaactgaa 1200 tcgttgaagg atcgagtatg gccattttgt tatgaatggt aagggtcgaa tatcaaattt 1260 ttgtaaaagt agaggaaatt gaaataactg aagggctctc aaaggagtaa gttacggaca 1320 tgtgaaaaag taacgaaatc cattatgttg aaaaggatcc gacgctcaaa ttgtgtaata 1380 tctgtacgtc tgcacaaagg ctgtgattgc agaaattgtc taatattgta aatttcaaat 1440 tcgttactta tagtataaca gaaaaatccc ttgatttcgg ctaaaataga gctaatgtca 1500 ctccattttc gccaatttta aataaaatac cccaaacggc aaaacggcat tttctcctga 1560 cgtggtgtt 1569 // ID Gypsy-44-LTR_NV repbase; DNA; NEM; 233 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-44_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44-I_NV; KW Gypsy-44-LTR_NV; Gypsy-44_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-233 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-233 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-44_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 522-522 (2007). XX DR [2] (Consensus) XX SQ Sequence 233 BP; 54 A; 57 C; 59 G; 63 T; 0 other; tgtcagagcg cgatttccgg tcacttgtta agaaaagtcc taggcgttca tgtagcgcgc 60 tcgcgccggc ctggaccgga gtcaggcacc tttgtcagga catgttcagt tatgtaatgg 120 cgatcgagcg tgttgataat tacacagcgc aaaatctcgt cgaaattgtg tgttaaagta 180 gtctttctcc gctcggaaac ctttggaaat agtccccgat atcccctgct aca 233 // ID Gypsy-46-LTR_NV repbase; DNA; NEM; 174 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-46_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46-I_NV; KW Gypsy-46-LTR_NV; Gypsy-46_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-174 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-174 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-46_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 526-526 (2007). XX DR [2] (Consensus) XX SQ Sequence 174 BP; 54 A; 43 C; 18 G; 59 T; 0 other; tgtaataata atagcctatt gtattatttg atcgacattg taatcaatac tagataaccg 60 cacccatttg taatcacgta taagctttag ctcgaccatc aataaacact attcaatcac 120 tacccttgga gtacgttatt ccgctatcca tcctacacta tccttcatct tcta 174 // ID DNA-2-5_NV repbase; DNA; NEM; 1346 BP. XX AC . XX DT 23-FEB-2011 (Rel. 16.02, Created) DT 23-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-2-5_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 2-bp TSD; KW NVREP150; DNA-2-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1346 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1346 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1346 RA Kapitonov V. and Jurka J.; RT "A family of DNA-2-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are flanked by 2-bp TSDs. Oroginally, this family was CC reported as the NVREP150 unclassified DNA transposon [1,2]. XX SQ Sequence 1346 BP; 400 A; 268 C; 272 G; 406 T; 0 other; tgtgacccgg caagggaaaa cgtacactag cgaaaaacgt tttagggcaa atctggaaga 60 tcaacgaacg ctttttctat aatgagggaa cgatcttgtt aataatgagg gaacgatctt 120 gcttcgttat atcgttcata aacgatcttg ttcccggggc acaatcggaa gaacgttttt 180 taaattcgga agttcgttcc cttcaaattg gaaacgctca agttcggaag atcgttctct 240 aaaattcgga aagttcgaaa gatcgttctt taaaattcgg aagatcgttc tcttgaagct 300 cgggagaaca ttctttaata attcggaaga tcgtctctag aaattcggaa gaacgctctt 360 aaagtttgaa agaatgtcct tgatatttgc cgtatgcaaa ctaagaaagc gagtcgactc 420 tatttgtatt tgcaatacaa cgacattaca catgttaacg gtgacgacaa caatatgacg 480 gttctcgctt gctactaaag tcgcgcatca aacagacctc tctaaaaaga gtcctctata 540 tctcagcttt cctttgccat taggactgtt agggtagtaa cgattcgaca attgatttgt 600 ttgagccgta tgtaaattaa gaaagcgagt cggctgtcga tattttcttg tcttttcaaa 660 acaacgaaat gttaatggcg accacaactt tactagtgac ggctttgcgc ttgctattta 720 actcgcgcat caataagacc tccaaaaaag aatctcctat atctcaaact ttaatttgct 780 attacgatca tcgcggggat tatgagccgt atgcaaacta agaaagcgag tcagctttta 840 cttgtctttg caaaacaaca acttgttaag ctgaaatata gctcaaaatt aaaattaaca 900 aaccaagcat ttctcaaaag agcgatgttg tctttttggt aacgattttc aaaatcggaa 960 gaaggttttt gccttcgggg ttttcccgca ctgataaacg tttttcaaat cccggaaaga 1020 agttcttgtc ttcgtgaagc cgatcatttc ttcggatgaa cgatcttgaa aatcggaaaa 1080 tcgttctcgc cttcgagtgt taacctcggc gatgaacgat tttaaaaaca gggagaacga 1140 tcttgtcttc ggaagaacga tattgccttc ggacagacga tcttgacttc ggggaaacgt 1200 tcttgaaaat cggatatcgt ttctcgtaga aacctgatat cgttctgaat atcgtaaaag 1260 cgttctgcat aatccgtcga acgatatttt tcgttcatag cccgaacgct ttttctctag 1320 tgtacgtttt cccttgccgg gtcaca 1346 // ID Penelope-7_NV repbase; DNA; NEM; 506 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-7_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-7_NV. XX NM Penelope-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-506 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-506 RA Kapitonov V.V. and Jurka J.; RT "Penelope-7_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 637-637 (2007). XX DR [2] (Consensus) XX CC It is only a 3' terminal part of the retrotransposon. XX SQ Sequence 506 BP; 144 A; 81 C; 105 G; 176 T; 0 other; ttcgcagtac ggttaccaat aagaaatatg tctttaattt tgacttagat tgtaattcag 60 attttgttgt ttatgtttac ttgctctatg tttatagcac gcagtacgta ggttctacta 120 tcaataattt tagaaagcgt tttaataatc acaaaagaag gttaaataag caccctagat 180 taccggttag tgagagagtt aaggatgacc ttatctatca acattttcat tgcgacaatc 240 atttaggtct tagtaatgta atggtacaac ttatagataa gtgtaactct gaggctcagc 300 ttagggaaag ggaaggtcag tgggcttatc ggcttaagtc tatctacccg cggggtctta 360 atagtgatga ctttttttgt agtaggaacc cacgtagaga tgtatagcgc gctattctag 420 aaaatgcgcg tttttgacag ttgtaatgtt tttgcgtctc gcgccactat tctgatgtaa 480 ataagcttgt aacgattcac cttctt 506 // ID MuDR-N1_NV repbase; DNA; NEM; 1174 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone MuDR-N1_NV non-autonomous DNA transposon - DE consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW MuDR-N1_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1174 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1174 RA Kapitonov V.V. and Jurka J.; RT "MuDR-N1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 624-624 (2007). XX DR [2] (Consensus) XX SQ Sequence 1174 BP; 345 A; 228 C; 230 G; 370 T; 1 other; gggtgtctac aaaacgaaga cctaaaacct aaaacctgtg accccaaaag ctacgacccc 60 aaaagcwacg acccccaaaa ttttgccgtt attatttagc ctaccttgtt tcccaaaatg 120 gctacacagc gtggaagttt catgtggaat cagtgatcct tatgagataa taagcttatt 180 caatttgttt ttttttttaa ttgggaaata gggaactact tgtgtttcca ggtggtcgtt 240 tcttaaaacg ccgataaact cagaaacccg gaatgtcacc cggtaaacat tttcgggtgt 300 ttcttccaaa atcttaattg cccgctaact ttatacggga aatcgcttca tgttctagtt 360 gtgtcgagtt gtagaaagtt ttcatcacag agaaaaccat tccactgccc ggtaaaaagt 420 gggccaatca aggcttacat cattttatcg gatttccttc caaccaatca ggtttcatct 480 ctgtcaaatg atttgacatt tagctgtcac agtgcgccta aaaatataaa cagctttgcg 540 aaattattag aagtttttct acaaaatgag actttattta cttgttcttt gtctttcttt 600 cgaaaaatgt cgatgccaca gcaatttttg gggtgcaagt tgtctacaga catcgacaaa 660 actaggattt caataactat ttagccaatc tattcataaa ctttggaaat tataatttac 720 ttgtcgggaa cccgtatcgg cacgctacgc aaaagctttg ttttgataaa cactcttcct 780 cgccagggag ttcgaaaact tttctggggg catttttcta aattaccggt aattgccggg 840 tctgttaggt taccgggaga gtttttggga taatttttcg ggcaaaggag cgtgtctgaa 900 aaatgagtgc aactacaatt tttaatggga caaataaacg acgattaaaa atagttcatt 960 ggcgcgcaca tgagaatatt tcctccatga aaagcacaac aaaattcgct gaattacctc 1020 attaggatca ctgattccat atgaaacttt cgcgctgtgt agccatttgg gaaacaaggt 1080 agactaaata ataactgaaa tttttggggg gtcgtagctt ttggggtcac aggttttagg 1140 tattaggttt taggtcttcg ttttgtagac accc 1174 // ID DNA-3-4_NV repbase; DNA; NEM; 2735 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3-4_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2735 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2735 RA Kapitonov V. and Jurka J.; RT "DNA-3-4_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 394-394 (2008). XX DR [2] (Consensus) XX CC DNA-3-4_NV elements are flanked by 3-bp targets site CC duplications. CC The consensus sequence contains long TIRs. Termini of DNA-3-4_NV CC differs CC from elements that belong to the Harbinger and En/Spm CC superfamilies, which CC are also flanked by 3-bp TSDs. It is likely that DNA-3-4_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-3-3_NV, CC DNA-3-5_NV, DNA-3-6_NV and DNA3-7_NV. In addition to 3-bp TSDs, CC all these elements CC have the 5'-TAG and CTA-3' termini. XX SQ Sequence 2735 BP; 833 A; 567 C; 516 G; 818 T; 1 other; tagtccagtc aatctgtggt ttcaggtgga actaattgca atagaatttc tctcaacgga 60 ttttgaacaa gtgatacaac ctagttaaca tactaaaagt ccccaaaaat ccctttggtg 120 gaacatcctg aaatttgtga tttttccatt tcggagcaaa accacagggt acccgcgtcg 180 gtaaaacgga aaaataataa aatacacgtc taaatcagta catttgaaag accattggtc 240 aaagttgatt aaatacccag tttggatatc gaaacaaagc aaattgcccc tgttttatat 300 ctttttccaa tatttctgta atccaaaaac cacagggtac ccgcgtcgaa aacactaaac 360 aaatttgaaa attcaagtct gaatcagaaa attttcaaag gtcattggac aaaaattact 420 aaagacacaa attctagtat cgaaataaag caacttgtcc atgtttcatt tctattttaa 480 atattttctc cacaaatgta tttctgcaty ctggcgtcag ttactgaaat ttgtatagaa 540 aacaaactta catgtgacag caactcagta gctagggttg ttatagaagg catggcctct 600 cgtcacctcc cagtgacttc cggggtccct caaggaagcc taataggccc ccttctattt 660 aggacctaca tcaacgatct agcagacgcc acagacaaag gcacaccgct atatactcag 720 acgacacaaa gctataccga agaatctctt cgataaagga ctgtgaagct cttcaggatg 780 acctgacaag tctaacaagt ggagcgacga aacaaatata aagtgttaat taagtcttga 840 cagtctcacg gaagaaatcg cccaactggt ggatcagctt ggcgccacaa gtcttcagcg 900 catcaacatt gaaaaagatc tcgggggcac aatatcgagc aatctcacat aggacaccca 960 cattctattt gtggtgtcca aggccaacag aatgcttggt ctgctcaaga ggacatgtgt 1020 cctaattaca gatacagggt caggcgtact ctgtacctgt cccttgtcaa gtcgcagcta 1080 tgtttcgcca ctgaagtctg gtcccccggc agcgtaagac ttaaaatgtc ctcctagaaa 1140 gagttaaaag gcgagccacc cgttgaattc taagatccaa gatcggggac ttgagctata 1200 aagagcgact tctaaaactc gatctactac ccttggtcta cgactgagag gtgaaagacc 1260 taatcttttt tttagtgtaa ctaactagtg taacttcgaa atgaccgacc tgaatgttca 1320 actttttgtc acttttgtaa atcataatcg tactcgtaac ctgaacccaa ccttaacttt 1380 atctccggct ctttgcagaa caactacgtt tcaagcatct tatttcaatc gtattgtaaa 1440 accatagaat ctagtatgta acttaactca gttcaataag ttctctggcc tactcgcgct 1500 tataaatatt tcctgaagaa ccattatcag accctacttg ccaatgtttt caacgtagac 1560 ttaccctgta catggtccat cgcacggaac tgtgactgcc accacaatta ttttttatat 1620 tcattttatt tccaatttgt ttgtttgggg gtacgtcctg catggacctt gtgcccgttt 1680 acgtatgacc ccccattggt catctttgtt gtctaataaa gcttttgaag actattctag 1740 taatcagtaa cacttttgtg ttttttgagg ttttacaccc agcctaaaga aagcaaatgc 1800 aatccaattt gtgcatttgc accgcaccat ttctagcagc gatccgtgtg ttggaggcaa 1860 gtctgtccgc actggaccat ccccaaggat cgctgataaa tataatgcga tacaaatgct 1920 aatcggattg cagcaccaga agatgaacct gcaagaagaa tggtctagac tgtagtgcga 1980 cgtttggaaa gtgtaagtca gacttgtcac aattctggac taatcgagct agagctagac 2040 gttcagtttc attagaagtg taagtagctt tctctaggct ggtgtaaaac ctcaagaaat 2100 tacaaaagtg ttccagatta ccgctgtatt acatgtattg aataggctac ctactgagct 2160 gatgtcacat ataagtttgt tttctagaca aatttcagtc actgacgcga gtgcgaagaa 2220 tgcagaaata catttgtgga gaaaatattt gaaatagaaa taaaacatgg acaagttgct 2280 ttatttcgat actaaaattg tgtctttaat catttttggc caatgacctt tgaaattttc 2340 tgattcagac ttgtattttc aattttttca gggttttcgg cgcgggtacc ctgtggtttt 2400 tggaatacag aaatattgga aaaaagatat taaacagggg caatttgctt tgtttcgata 2460 tccaaacatt gtctttaatc aactttgacc aatggccttt tcaatgtact gattgagacg 2520 tgtattttat ttttttccgt tttaacgacg cgggtaccct gtggttttgc tccgaaatgg 2580 aaaaatcaca tatttcaaga tgttccacca aagggatttt tggggacttt tagtatgtta 2640 actaggttgt atcacttgtt caaaatccgc tgagagaaat tctattgcaa taagttccac 2700 ctgggccata aaaatttcat agattgactg gacta 2735 // ID Gypsy-64-I_NV repbase; DNA; NEM; 2332 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-64_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64-I_NV; KW Gypsy-64-LTR_NV; Gypsy-64_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2332 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2332 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-64_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 561-561 (2007). XX DR [2] (Consensus) XX SQ Sequence 2332 BP; 740 A; 529 C; 508 G; 555 T; 0 other; aggatccaag aaactcttga taatctggga gggaagtcgt ggtttagtgt cctcgatcag 60 ggtaaagctt accaccaggg cttcatagca gaaggcagtc aacctctaac gacttttata 120 actccatggg gtctttacga gtgggttaga atcccattcg gtctaaagaa tgctcctgcg 180 aatttccagc ggagtaaagc ttaaaccgaa aaagtgtgat ttattcaagc gagaagtgtc 240 cttccttgga cggatcgtct cccaacacag ctaccgcatt gaccccaaag cgacaacagc 300 tgtgcaagag tggcaagatg aggtcccaca gaacgtaggt gaggttaggc ggttgatggg 360 attgatatac cgtcgccata ttccgaattt ctcaaagacc gctaaaccta tttacggcct 420 actaatgcaa agaccacgcc taagtctccg agagaatggg cacctcaaca aaaacaaaca 480 ctgaaagaat caaagaatta cagtgatcag aaaggcaata accagatttc gcgtaagtct 540 ccggtagaat ggacatctga gcacaaacaa gccctagatt cattaattga gagtataact 600 agccctccaa ttcttgctta tccagactat caatcgtcat ttatcgttca cacagatgcc 660 tcgcaaagtg catctcggac attgtcgcca gcagaaagga attatcacct gcactcggga 720 aaattggagt tcttagctct caaatgggcc gttacagagc agttccgtga ttacttatat 780 tataccagag tttacagttt acactgataa caatccgctc acttacgttc ttactactgc 840 caagctcaat gcaacaggtc tgcgatgggt aggagaactc gcagattata actttaacat 900 caaatatcgc cctggcaaga tgaacgtaga tgcggatagt ctctccaggc taccagaaag 960 cttttataag ttcatggaaa catgcacatc aacaatcaac caagatgatc tgtcgactac 1020 actctcgtca gtagcggcac ttgggtctgg tgacaccatt cttttggcta gtgtaacgga 1080 tcaacaagat ttgctaaaca tcgatatgga ctgtttactt gtaaatgaag tgaaggtctt 1140 gggcattttt aaagcacaaa gtgatggtcc caacattaaa cgaatcatgg aactcatgtc 1200 agctaacatg cgacccagac gtcagacgtc gtgaatcacc agaagtaagg aagtacatat 1260 aagagtatag caatctccat atagatgaaa aggcactgct tcgccacaca gagcaggtag 1320 tgctccccag ggcatttcaa tcgaatgtaa taagagaatt gcataacaaa atgggacatc 1380 ttgggactga tcgcgttcta gccttagcta aagatagatt ctactggcct tacatgagaa 1440 gagatattga ccactatatg tctaacgtat gtcgctatct gcaacaaaga cacccctcca 1500 ggcacacaag ggaacccctt cagccaattg tcacctcgtc tccctttgaa ctcgtatcta 1560 tagattatgt acatcttgaa aggagttctg gtggatatga gtatcttctt gtaattgtcg 1620 accatttcac gaaatatgca caggcctatc ccaccaagaa caagggttcc acgactgcag 1680 cagaaaagat atataacgag tttataccgc gtttcggtta tccaggcaaa atacatcccg 1740 acatgggagc ggagtttgaa aacaacttgt ttaaacacct agagaaattg acaggtgtaa 1800 tgcattctag gacaaccccg taccatcctc agggaaatgg actggtcgag agaatgaacc 1860 gcaccctact aggaatgatg cgaacacttc ctgaaatgta caaaactgga aggaccatgt 1920 acataagctt gtacatgcgt acaactgcac gaaacaacag gatttgcgcc gttcaaacta 1980 ctattgggcc gttcaccaag actcccaatt gaccttatgt ttggcctcga ctctgacaaa 2040 gacaaagctt cacactcaga atattacaag agatggaaaa ctgcgatggg acaagcatac 2100 agccaggtac ttaagacaac cacacaaagc agtcagagaa attgcattca gtacaacaag 2160 agagttcgtt cttcagtact agaacctgga gatagggtct taattcggaa cctaaaccct 2220 cgtggaggtc caggcaagct tcgaagttac tgggaagaaa aggttcatgt ggtggttaaa 2280 cgaaaggcac cagatagccc agtgtacgag cttaaaccag agggggcaga ag 2332 // ID DNA-6-2_NV repbase; DNA; NEM; 1980 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-6-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-6-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1980 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1980 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1980 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1980 BP; 635 A; 394 C; 363 G; 588 T; 0 other; tcgccccatg taaggtaatc caagaggctt ccggattctg gattccaggc tctggattcc 60 ggattccgac ccttggattc cggattccag gcacaactta tattccggat tccaacaaaa 120 tattaatgac attctattaa aatcatgcaa aactctcgac atagcaatga acagaaaaca 180 ttagcgtatc gaagtgtaat gctaaaaagg gacaactagt gaaaagaaac catttgttta 240 ccattgcttc actaagatat gcattatacc actaagatat gcattatact actaaaatat 300 gtattatacc accaaaatgc attacaccac taagatatgc attacaacac taaaatatgc 360 attatatcac taaaatatgc attatatcac taaaatatgc attatatcac taaaatatgc 420 attatataac taaaatatgc attatatcac taagatatgt atcccactaa aatgcattat 480 acatgcattt ataacactaa aatatgattt ataccactaa aatatgcgtc actggcgtca 540 ctgttttctt tacgtcttgc aacgtttttc aaagagcaaa ggcatttggt tgacgtccaa 600 attcgaaacc aagattccac gaggttacac cctgctcagc cacacgcggt cgccaggaaa 660 aaaaactttg caaaacggat taatggcttc cgtgacgcga cgcacaatat ttgggccgct 720 tgcatggtat atttggtagg aattcaagtt gacacatcct ttcattcgta atgcatgcgt 780 tcgcgttaat gtatcgataa tcagacagat atcataaaag ggttgctcaa atcgggtctc 840 ggaaataaaa caattgatat ggattaacgt ctgagtgcaa actcactcgc tcttttgacg 900 aaaagtttca caggcactga aggattattc ccactttagt aataggcgat tccagctata 960 actgcatatt ttcaatcaga aatgccgagg acgctaccac agctaccaga accagaatgc 1020 aacgcgcact ttttacagtt tgctcgacga atctaccaca actaccgtca tgccgcgcgc 1080 gtgcgtttta gctggaatgg tctattcaaa gacgaacaaa accgagtttt tggtgacgtg 1140 tgcacgtgag aatggctata ctctgtgcaa tacacccctt ctatctcata gagcggattt 1200 cggatgagtg taaaaagtaa aagtaagtca ggcttgcgtt ctgttagcgt ttctattggt 1260 ttagggtata gtgttttgaa ttttagccaa tgaaattgca aactaaatca aaacgcgcca 1320 gtacttacgt caaggctaaa cgcaaatttg actttcttcg cctcctgatt tgtttgttgt 1380 tgaatggctt ccattcccga ttggctaaat tttcgacatt aatatgaaat tcgctcattc 1440 taacaagaac gggagatcag gctaaaatgc gtatatctcc cgtaaaatgc ataatgttag 1500 aagggagtcc tattttataa gcttatggct tctctggata tccttgccta ctcaatttta 1560 tgaattgtaa ctctaataag aaaaatactg gcaaaataaa actgtgaact gtgagtctta 1620 actggagaac ttgttttgta ctcttactag tgttcttaag aatgtaagaa ttctgccaat 1680 tgaagctaat tagaccggaa aaagttgtac aatgatcgac aatgaatttt caatcaatta 1740 tgctaaacac taaccagaca cacctcctca ttagaaatgc aaataaaggc aagggcttgt 1800 gtggtaattg tgggattttt ttaagtcatt tatttgaatg aaaagtatag attccggatt 1860 tcgaaactat ttggattctg gattccagac tgtggattcc ggattccaat ctctggattc 1920 cggattccaa gggccctaaa aacctggatt ccggattctg gattacctta catggggcga 1980 // ID Mariner-N2_NV repbase; DNA; NEM; 175 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-N2_NV non-autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Mariner-N2_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-175 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-175 RA Kapitonov V.V. and Jurka J.; RT "Mariner-N2_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 618-618 (2007). XX DR [2] (Consensus) XX SQ Sequence 175 BP; 55 A; 30 C; 49 G; 41 T; 0 other; cagtagaacc ccgctaactc gaactctgaa gggaagcaaa aatcagttcg agttagcggg 60 gaattcgagt tagcagagta aaaatgactc aaaattaggt tcaagggaaa tcgaacttag 120 ttcgagttag cggggaattc gagttagccg agttctagtt agcggggttc tactg 175 // ID DNA-TA-18_NV repbase; DNA; NEM; 221 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-18_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-221 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-221 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-221 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-18_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 221 BP; 48 A; 67 C; 70 G; 36 T; 0 other; gggtgattta gatccacgac gccggcaaga ggacgccgcc tcgcgcacgt tcgattgcgc 60 gcgcacgcta atttttgccg gcgtcccgtc ctgaagagga cgtgaaaaag catgaaatgc 120 cgtcctgaac aggacgcgac gccggcaaga aaagcgtgcg cgcgcaatcg aacgtgcgcg 180 aggcggcgtc ctcttgccgg cgtcgtggat ctaaatcacc c 221 // ID Gypsy-42-LTR_NV repbase; DNA; NEM; 211 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-42_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42-I_NV; KW Gypsy-42-LTR_NV; Gypsy-42_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-211 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-211 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-42_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 518-518 (2007). XX DR [2] (Consensus) XX SQ Sequence 211 BP; 66 A; 40 C; 40 G; 65 T; 0 other; tgtaacaata ttgttatgtt cagttagtga tttgttatta gtgattttgt tatgcaatca 60 gtcactgctc ccccacgtgc cccggatatc acagtattga tatatgacac cggggtcagt 120 ttgtaaaata gactgagcat gaataagaca aacgaatcga ccacgaatcc tgaataaagc 180 ctatagaaac tctgaatagc ttttcgttac a 211 // ID Gypsy-24-I_NV repbase; DNA; NEM; 4265 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-24_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24-I_NV; KW Gypsy-24-LTR_NV; Gypsy-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4265 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4265 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-24_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 479-479 (2007). XX DR [2] (Consensus) XX SQ Sequence 4265 BP; 1410 A; 913 C; 1045 G; 897 T; 0 other; tggtgtcaga aatagaggat tcacagtctc tgtaaaagaa tacagtgaga agagaaccca 60 aaatgccaga cgaaagcgga gagtcgacga gtgtgcctgg gtttgtacaa accaacctcc 120 aactaccgca aaagttagag acgagaggca acttagctaa caattggaag acctttaaaa 180 ggctctggat aaactacgaa atagcctcgc aactggataa acagagaatg gagctgagaa 240 cggctacttt gatttcatgc attggtcccg aagcacttga gatctacgac ggtttgccct 300 ttgcaaacga agaggacaaa acaaatatca atcgcattat ggagctcatg gaagcgcact 360 gcgttggaga aacgaatgag atctatgaaa ggtatttgtt taaccgaaga aaccaggaaa 420 atggtgagtc agtagaaagc tttatcgctg cacttagatc acttgctaaa acttgtaatt 480 acggcgaatt gcaagatgga atgattaggg acagaatcgt agtcggaata gccgacaaca 540 gtattaggaa gaaattgctg acggaagcta aactcacctt agcaaagtgt gttgacatat 600 gccgtgcaaa tgaagctact gctaaaaggc taaaggaaat gtcccagcaa tccggcgaaa 660 taagcgctat taccacaggc cccccgcgca gaaaaacagg gtcaaaaggg ggtagaaggc 720 aggaacccag aaaaccgcca catacggata gcagcaaatc aaatccccac cccaaatgta 780 aattctgcca tagattacac cctagagcta aagaaaaatg ccctgcttgg cagaaaacat 840 gtgatacatg tggagaactt aatcacttct cagtagcatg taaggctcta aaagcaagca 900 agaagggtaa gaaaccaata cacaatcttg attatgaaag tgacagtgac tatggtgcat 960 tatttactgt ggagtctgtg gacactctga acacaaatcc actcagccct aagaaaattt 1020 atgcacacat gcgccttcgt gatgagctaa tcaagttcca attagattgt ggagccacag 1080 tcaatatctt gccagaagat ttgtataaga aagttttcaa tgacccaaaa ttgaaacgct 1140 tacagaaaag cagcgcaaca ctagtcatgt ttaacaagtc agagctaaaa ccgctagggg 1200 tggtcaacat agaaaccctc aacccaagga ataatgatct actgctgacg aagtttgcaa 1260 tagtccctag aggctacacc ccactgctag gtgcacagtc cgtgcagaat ttcaagctaa 1320 tgacagtgaa cagtgagaac attatgtctt tgtcagactc aagcccaacc tcagacccag 1380 ttagtgaatt tccagatgtg tttaaagggg agggtaaact agatcaaaag ctacacctag 1440 agctcgatgc aactgtcccc cctgtaatcc tcccagtcag gaaggtgccc ctggcagtac 1500 gagaaccact caagaacgaa attgatcggt tagtggggtt aggagtcctt cagtcggtag 1560 atgttcccac agaatgggta tcctcaatgg ttgttgtcaa gaagcctaac ggaaagataa 1620 gactctgcat agatccgaag ccccttaaca aagcgttaaa gaggaataga taccctctac 1680 cagtgattga tgacttactt ccgcagctta ctaatgccaa ggtgttcagt gttgtagatg 1740 cgaagaacgg attctggcat atacaactgg atgacgagag tagtttcctg actacatttg 1800 gcaccccatg gggaaggtac aggtggacga ggatgccgtt cggtatcgcc ccagcccccg 1860 aagagttcca gaggagattg gaacaagcac tagaaggcct ggagggtgtc aaaccaatct 1920 tcgatgacat ccttatcttc ggaaaaggtg actccaaaga agaagccatc agagatcatg 1980 atgccaagtt gagatccctc ctcgagcgct gtcgccaaaa gggtatcaaa ctcaacaagg 2040 agaagctgaa gctgcgttgt gctgaagtca agttcatggg tcacgtggta tcgacagacg 2100 ggttgaagcc agaccccgac aagttacagg gtattgaaga aatgcctaca ccaacaaaca 2160 agcaagatat caagaggttg cttggtatgg caaattacct ccagaagttt gcaccgaatc 2220 tctcagaagc agctgcaccg atgcgcgaag tgctcagaga agagaaccag ttccactggg 2280 acgagcaagt acaaggacaa agcttcaaga atgtgaagaa gattgtttca caagcaccag 2340 ttctgaagtt cttcgaccca cacgaagaag tcgagctgca gtgtgatgca tcagagaaag 2400 ggatgggagc ctgtctaatg cagaagggac agcccatcgc atatgcgtca cgttctctaa 2460 cagaaaccga gaagaactat gctcagattg agaaagaaat gctgtccatt gtatttggag 2520 tggagcgctt cgagcattat ctgtatggac ggccaataaa agttgaaacg gatcacaaac 2580 ctcttgaaag cattttcaag aaaagcctca ttagtgcccc caagcgccta caaagaatga 2640 tgttgcgact acagaagttt gacctgcaag tcaactataa gagaggagct gaaatgtacc 2700 ttgcagacac cctaagcaga gccttccgag ggcagaagag gagtgctagt cgagatgatg 2760 taggagatgt gatgctacta ggagagatga gaggtacgac tgagcgagaa gtagaaagta 2820 ttgacatgat acagtttcta cctgtctccg aagctaccca agcatcacta cgacaagcta 2880 cagagcagga cacagctatg agagagctga agtctataat ccgacaaggc tggccagagg 2940 tgaaggatga cgttcctgtg agcatcagag attactactc ttttagagat gagttgtcac 3000 tacaaaacgg cctggtcttc aaaggagaga ggttagtgat tcccaacagt tccagagtag 3060 aaatgttggc taagatacat gccagtcaca tagggatcca gggatgtctc cgtagggcta 3120 gagaagtcct atactggcct ggaatgaata aagaagtaga agagtatgtt gccaaatgtg 3180 agatttgcaa cagtcactta tcagagcaag gcaaagagcc aatcatatgc catgaaatcc 3240 ccaaccgccc atgggagaaa gtaggcatag acctgtttga actgaatggg aaagactttg 3300 tactaacagt tgattactat tcaggcttct ttgaggttga caggttggaa ggcaagactg 3360 cgaaagaagt gatgaggaag atcaaaccac atgtggccag acatggtatt ccagaccaga 3420 ttatgagtga caatggcccg ccattcgact cgcatgagtt tagacagttt acaaacagtt 3480 atggaattga acatgtgacc agctccccag gctatgccca atccaatgga aaagtagaga 3540 atgcaatcaa gacggcaaag aatctgatga aaaaagccac agaatcaaac aaagacccgt 3600 acttggctct actggattgg cggaatacac caagcgaaac agttggttat tcaccagttc 3660 aaagattgtt caataggaga accaagacac tcctaccaac ttccagcaga ctcttgaaac 3720 catcagtgcc cagagatgta cgccagaagc tcacgctaca gaaggcaagg caaagcctga 3780 attacaaccg tggagcaaag gagttagaag agctgaaaca aggagatgtt gtgcgtctac 3840 aacctacaaa gacagtggga agggccaagc aatggaagca agcaagagtt gaaggaaaag 3900 ttgatattcg atcatatcag gtacgtactg aagacggacg ggtttaccga cgaaacagac 3960 gacacctgcg gaaaaccaga gagcagatgc agccaccgca gcaagaagag atagaaatgc 4020 actgcccttc cccaagcaga cctgctaaac cggcgatgcc tacgacacac aagcagcagc 4080 agcaggagaa acaaccttca gagaaagccc ctgagaatac tgcccaggat gtccccgatg 4140 tcccagcgga gcaacgcacg cgttcaggaa gggttgtgaa accgcctgta cgttttcaat 4200 agttttatta tccaggacag tgacattttg ttagtgtatt tttttttaat ttttggaagg 4260 ggaga 4265 // ID Kolobok-N22_NV repbase; DNA; NEM; 2145 BP. XX AC . XX DT 14-MAR-2011 (Rel. 16.03, Created) DT 14-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N22_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP90; Kolobok-N22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2145 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2145 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2145 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N22_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-MAR-2011). XX DR [3] (Consensus) XX CC It contains ~800-bp TIRs. This family was originally reported as CC the unclassified NVREP90 transposable element [1,2]. XX SQ Sequence 2145 BP; 671 A; 400 C; 411 G; 661 T; 2 other; ggtggcgcgc cgaggttgtt ttggctaaac agcttatata ctatgttccc tacagaagac 60 tcattttcgg cgcgattttc gtaaattttt cagattttat taatacatct atgctttatc 120 agwttccgct agattcactc ttcttggaaa tcaaattatt ttttgtcatg caagttaaaa 180 ggaagcaata tttttatatt aaaataaaaa tctcgaaatc tgcgcgatga attttattct 240 aaatctacag taacacctaa caatactcca acttgaagca cacgaatttt tggcttaaaa 300 ctgacctgtc aaacttcgcg attgatgaat ctttatttca cgccaaaatt gtcctcgcaa 360 tatttgaaaa aaataaatgc actcttgcct acaaagatcc atccccgaat ttacgccccc 420 tgctaagtcc aaaccctaag gcaacttgtg tgagaggggc aagaggacca gtgttgcaca 480 agaataaatt tcagatagtc aattcgagag tatttttgtt aagataattt gaaaactaaa 540 gaatttttcc ttttcaacat tttagcgcaa cccgctcatc ttccaaacta ttacccgact 600 ctattggtaa aataggcctt accgaaagta cttgcttgat gtagttgtat gtcgaacctg 660 cgtttatgag aaattagaat caaaagttga gtatctgaac gcgcttcaaa cgaagcccac 720 gctagtgtca cacatggtaa tcgacgatag ctgccttgtt tgtttcacat gtgacaaagt 780 tgcacgagcg gaactgagat cccgggttgt gcatttcgta cagatatctc tattctgtga 840 gaacgcttac tgtgaagatg tgaacgctga aagaaacact ctatacagtc taaagtacgg 900 aagaatataa aaaaatgcta cgggtatata ttttgaagag gaaatttgtc aatctatgaa 960 aaactataga taagaatcat ataaaacaca cataaccccc tctcactgaa aaaaaaacat 1020 tgttatcaaa aagtttgcaa tttcgaagtt tttttgacag ttatttcgca cggtattttt 1080 tttgtctacg ttttttaaat ttttcactgg acttggggtt ttcaagcccc acacccaccc 1140 ccgctatcca gcatctctct ctctctatga gtaaaatgcg acttagaaca tgacgggttt 1200 ttgttttgta ctttacgtat tttttatttg aatgaatcga aacggttaaa cgggtggagt 1260 ctagaaaaag agttcaaagg cggtwgcata accaaatgga atagaatagg agatatctgt 1320 atgaaatgca caacccggga tgcatgggat ctcagtttcg ctcgtgcaaa tttgtcacat 1380 gtgaaacaaa caaggcagct cgtcgattac catgtgtgac gctggcgtgg gcttcgtttg 1440 aagcgcgttc atatcctcaa ctttcgattc tagtttctca taaacgcagg ttcgacatgc 1500 aactgcatta agcaagtact ttcggtaagg cctattttag ccatagcgtc gggtaatagt 1560 ttagaagagg cgcggcttgg gctcaaatgt tgaaaaggaa taaattcttt agttttcaaa 1620 ttatcttaat aaaaatactc tcgaattgac catctggaat ttattcttgt gcaacactgg 1680 tcctcttgcc cctctcacac aagttgcctt agggtgtgga cttagcaggg ggcgtaaatt 1740 cggggatgga tctttgtagg caagagtgca tttatttttt caaagattgc gaggacaatt 1800 ttggcgtaaa ataaagattc atcaatcgcg aagtttgaca ggtcagtttt aagccaaaaa 1860 ttcgtgtgct tcaagctgga gtattgttag gtgttactgt gaatttagaa aaaaattcat 1920 cgcgcagatt tcgatatttt tattttaata taaaaaaatt gcttccattt accttgcatg 1980 aaaaaaatat aatttgattt caaacaagtg tgaatcttgc gggatctgac aaagcataga 2040 tgtattaata aaatctgaaa aattcacgaa aatcgagccg aaaatgagtc taatataggg 2100 aacttagtaa aagctgttta gccaaaacaa cctcggcgcg ccacc 2145 // ID DIRS-34_NV repbase; DNA; NEM; 2031 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-34_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-34_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2031 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2031 RA Kapitonov V.V. and Jurka J.; RT "DIRS-34_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 430-430 (2007). XX DR [2] (Consensus) XX SQ Sequence 2031 BP; 541 A; 495 C; 428 G; 566 T; 1 other; aaaaagacac caggggaata ccgccttatt caacatttgt ctttccctca tggtatttcc 60 atcaacgatt tcatacccga ggaatattcc tcagtgcact acgctacaat ttcggatgtt 120 atttctatcc tgcagaggat gggccctggc tccctcatgg ccaagatatt aaatctgcct 180 taagaataat tcctatacac cagtctgatc atccactatt aggcctaacg ttgcagggtt 240 cctgtattac gatcgctgtc tccctatggg ttgttcttca tcttgtgcaa ttttcgaagc 300 ttttagctca tcccatgcga tatggggcat ccggagttct gcatatttta gataaacttc 360 ctttttatcg ccaatagtgc ggaaaaatgc cgggaagaca taactttcat tctatgtgta 420 acttcctcgg ggtttccatt gcacaggaaa aaaaccatgg gtacagagac gtgtttgcaa 480 ttcgcgggca ttactctgga ttcagtgcac caagaagcac ggctacccgg cgataagctc 540 gcaaagtgta aggctttgat agcccctttg cttaaacgca aaaaagtcac atttaaggaa 600 ttgcaatcgc ttatcggcct cataaatttc acatgctcag tcgttttgcc ggggcgcgcg 660 tttctacgtc gacttatcga tctcactcga ggcgttaagc acccagcgca ttgcataagg 720 ttaacgcgcc aggctaagtc cgatctcaag gtccgatctc aaggcaatct tttttacatg 780 atcataacgg cagatcattt tttatcgaga agcgttggca actatcgtca aagctcgggc 840 tatttacaga cacagcaggg tcaaaaggtt atggcgcgat tttaggaacg cactggtttt 900 acgtggcttt gaaaaaagcc tggcaaaact ttaacataac ctttttggaa tttttcccaa 960 tcgtactggc actccatatc tggggccata gngtctaaca ccaaggccga tttgatttca 1020 cggttccagg tcgatcagtt tcgagaaata tttcccgaag cggacactca gccaaccgcg 1080 gtacccctga gcctacgacc ggagacttgg tgcgtatttt aaacgagctg ttaggtaatg 1140 ccctctcttc cgggtcgcaa caagcttacg ctagagcatg gaacacgttt cgacagtttt 1200 atcatcagtt ctatcgcaca gaccagctaa acctcccatt aggcacccct actttagcac 1260 tctttatttc ttacttgaga gctaagcaat tagccgcctc gacaatcctg tcatatatgt 1320 cttcgatagg ctacgtacat aagctaaaag gcatgccgga cccaacgcaa gcgtttataa 1380 ttcacaaact tttgacagct gtcaaaaaac aaaaatcacc agatgtgcga ttgccgataa 1440 cagaaacagt gttacaccag ctggtggatg cccttgtttc cacaaattct tcggcctcgc 1500 aacgcacgct attcaaagca atgtttatgg cggctttcta cgggtttttc cgcataggtg 1560 aattaatccc aaaaatatct gccttaggcg atcaagtcgt tcaaatcaga gatttagcgc 1620 tctataaaag cggcaaagag ataagtaaac tagtgataac gacttcgcat ttccagcata 1680 ccacgagtaa taggccgttc gagataacaa ttgcgcgttt gccgtcggcc aactactgcc 1740 cagtgcgcgc tattatggat tactgcgctg cgaggggatc ccaaccaggg cctctttttc 1800 tatcccatgg taatcccgta tctatgtccc aattttcatt agaattaaat cggtgcctta 1860 gtttttgtga gttggacact tctcgctata agagccatag ctttcggatc ggagcggttt 1920 gtcacaccta cgaaaagggc tattcggatt cccaaataag ggctatgggt tgatggaaat 1980 ccgatgcgtt taaaatatac attaggcccg atacctttaa ggcgacctag t 2031 // ID Kolobok-N1_NV repbase; DNA; NEM; 226 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former CON1; Kolobok-N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-226 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 360-360 (2007). XX DR [1] (Consensus) XX CC Kolobok-N1_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N1_NV transposon CC is characterized by 16-bp TIRs (3 mismatches) and TTAA target CC site duplications. This family is composed of a few thousand CC elements that have been transposed continuously for a very long CC time: the youngest and oldest elements are ~8% and 30% divergent CC from the consensus sequence. XX SQ Sequence 226 BP; 72 A; 45 C; 40 G; 69 T; 0 other; agagcccttg tcagccacac ctttgttatt gttttcattt aatattggaa ggcacataat 60 gtgctaaaat ctcgaaataa ccatctaaaa acaaagttta atactttatt taccaaattc 120 aatcgaaaat atcgcattgg cttccccaaa tcagccgatg gaaatggatg ctttttcaca 180 cttggtactt tgctaggatg acaaaatggc ggctgacaga ggctgt 226 // ID Troyka-1-I_NV repbase; DNA; NEM; 5148 BP. XX AC . XX DT 29-APR-2008 (Rel. 13.04, Created) DT 29-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Troyka-1_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Troyka-1-I_NV; KW Troyka-1-LTR_NV; Troyka-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5148 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5148 RA Kapitonov V.V. and Jurka J.; RT "Troyka - a distinctive group of gypsy-like LTR retrotransposons RT inducing 3-bp target-site duplications."; RL Repbase Reports 8(4), 511-511 (2008). XX DR [2] (Consensus) XX CC Troyka is a distinctive group of gypsy-like LTR retrotransposons. CC Troyka retrotransposons differ from canonical gypsy and other LTR CC retrotransposons by the length of target site duplications (3-bp CC in Troyka) and by the unusual 5'-CG and CG-3' termini of LTRs. CC The ~1600-aa polyprotein encoded by Troyka elements is composed CC of the aspartyl protease (pos. 350-400), reverse transcriptase CC (pos. 700-900), and integrase domains (pos. 1250-1400). The CC polyproteins encoded by different families of Troyka present in CC the cnidarian and amphioxus genomes are ~50% identical to each CC other. However, there proteins are only 20-30% identical to the CC pro, RT and INT domains encoded by canonical gypsy LTR CC retrotransposons. CC Troyka-1_NV is a very young family of Troyka LTR retrotransposons CC present in the cnidarian genome. Copies of Troyka-1_NV are CC flanked by ~99% identical LTRs. XX FH Key Location/Qualifiers FT CDS 102..4994 FT /product="Troyka-1-I_NVp" FT /note="Gypsy polyprotein." FT /translation="MAATHRAPKQWSLSKTETITSFENWKQNLMYTLSLDT FT NFSTYLADGATWKKKTKTEPLRGYTDDDETVQQSKRLTAQQKVNFLELMLG FT QIANYCPIISRNTLVKNSTSLEFIWQAIRQHFGFQVTGAHFIDFVDIHLEP FT DERPEDLFQRLMAFAEDSLLKPNNLTHHGEQVTEEEELSPTLENLIVLTWL FT RLIHPSLPRLVKQRYGTELRSRTLASIKPEISQALSSLLEEIRTSDDAKIL FT RSAVSNTYQWKPATSHNNQWKPAPNSKTTSRKPRSSKVCPLCSQANRSDTH FT HFLSECKFLPDSDRRYMIKARQIADIFDDNDSELETHAQMPSTESIDPPAH FT TAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGNMIRLSTATRLGCN FT ITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAG FT TPFMEKNDIAVRPAKGQIILGDNTIYTYGAHHSTLTSTTARLVTVLRAPPR FT NATVWPGEFLEITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWPPPGIVT FT SIAGRIRIPNLTSEPRSLKRNEHFCQVRQLFEPSNVTTTSPARAFPSTDTL FT HSANVSLDPDSLLPSDIKAKFKALHHEYDQVFDANIEGYNGHVGPFEARVN FT MGPVEPPQRKGRLPQYAREKLLELQDKFDELENQGVFKRPEDVGISVEYLN FT PSFLVRKPNGGSRLVTAFADVGRYSKPQPSLMPNVDSTLRQIAQWNHLIAT FT DLTSAFYQIPLSRDSLKYCGVATPFRGVRVYTRCAMGMPGSETALEELMCR FT VLGDLLAEGVVVKLADDLYCGGNTPHELFSNWKRTLQALHECNLRLSASKT FT IINPKTTTILGWIWSAGTLKASPHRVATLAQCPTPTTVGRMRSFIGAYKVL FT SRVVPQCSTFLSPLDEIVAGRESRDTIEWTDNLHTAFYNAQKALSSTRVIT FT LPRPEDFLWIVTDGALRDPGIGATLYITRNGNLHLAGFYSAKLKGSQSSWL FT PCEVEALSIASATRHFSPYLIQSHHRASILTDSKPCVQAYEKLCRGEFSAS FT PRISTFLSAVSQYQATVRHVSGSSILPSDFASRNAPPCEDEACQICSFVKQ FT LGDSVVRRSSIQDVIDGNERLPFTSRSAWLAIQSECPDLRRTHSHLKQGTR FT PSKKVTNIKDVKRYLGVATIAKDGLLVVKRETPLSPSRECIIVPRRVLDGV FT LTALHIQLCHPSTHQLKMATKRYLFALDLEKAIVRVSQACHHCASLRTSSK FT ARIEQSSCDSPDAIGVSFAADVIRRSRQFILIVRECVTSYTTSLLLTNEQH FT STLRDALIRLCVQMRPLDGPVAIIRTDPAPGFQALKEDKLLQHHRLVLEIG FT RAKNVNKNPVAEKAVQELEREILQLDPLGGPVSEVALAVATANLNARIRLR FT GLSAREMWTQRDQFSNSQLPFQDQTLIEKQHDQRNSNHAYSEKSKAPTADF FT RPSTAITVGDLIYLHPDRNKTRGRDRYLVVDTEGGFCNIRKFIGSQLRSTS FT YRVKKTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATKRLPPPAPPDIPT FT AITDPPSRDVPPQSDADASETRAMDSSHCPSNLQDDDTSPPRRSTRERHLP FT LRYRDDDFITDFK" XX SQ Sequence 5148 BP; 1396 A; 1519 C; 1068 G; 1165 T; 0 other; tggtggcagc tggatttcgt cccttcgtct ctttcgccaa aaaaaatcac agaatagaac 60 agcaaacgcc gctgtgacag cacaacttat ttaccgaaga aatggctgct actcacagag 120 caccaaaaca atggagccta tctaaaaccg aaactatcac cagttttgaa aactggaagc 180 aaaacctgat gtatacgctg tctctcgata caaatttctc aacttatctt gccgatggag 240 ctacatggaa aaagaaaaca aagaccgaac ctctccgtgg ctataccgat gatgatgaaa 300 ccgttcagca atcaaaacgc ctcactgccc aacagaaggt gaacttttta gaacttatgc 360 taggacaaat cgcaaactac tgtcctatta tttcgagaaa cactttagtt aagaactcta 420 catctctaga gtttatctgg caggcgatcc gacaacattt tggatttcaa gtaactggtg 480 cacacttcat agatttcgtc gacatccatc tagagcccga cgagcgcccg gaagacctgt 540 ttcaaagact tatggctttc gccgaggatt ccctcctcaa acccaataac ctaactcacc 600 atggcgaaca agtaacagaa gaagaggaac tttccccaac actagaaaac ctcatagtgt 660 tgacttggct gaggcttatt cacccatcac tacctcgcct tgttaagcaa cggtacggga 720 cagagctacg ttctaggact ctcgcatcga tcaaaccaga aatctctcag gcattgagct 780 ccctgctaga ggaaattcgc acgtccgatg atgcaaagat ccttcgctca gccgtcagca 840 acacttatca gtggaaacct gccacaagcc acaacaatca gtggaaaccg gcaccaaata 900 gcaagaccac atcaagaaag ccccgctcct cgaaggtatg cccactctgc agtcaggcta 960 atcggtcgga tactcatcac ttcctaagcg aatgcaaatt tctcccagat agcgatcggc 1020 gctatatgat taaagcaaga caaatcgctg acatcttcga cgacaatgac tctgagttag 1080 agacacacgc ccaaatgccc tcgactgagt ccatcgaccc ccctgcacac actgcccatg 1140 acgcggtcgt cctcagaata cagacccgcc agtcaccata tctagacgtc ttctacaatc 1200 accataccgt acgaatgacc gtcgacagcg gtgccacagg caacatgata agactctcca 1260 ccgcgacacg cctcggttgc aatattacaa ccagctctca gtccgtaagc caggccgacg 1320 gctcatccca gttacgtgtt gttggtgaaa cgcgcctttc tttcacccgg gcagataagt 1380 ctttctcatt tgaaggtctc gttgtggaaa acctagacgt agaagtgtta gccggcacgc 1440 cctttatgga gaaaaatgac attgcggtcc gacctgcaaa agggcagatt atccttggag 1500 acaacaccat ctacacttat ggagcccacc actccaccct cacctcgacc acggcacgcc 1560 ttgtaaccgt cctccgtgca ccaccacgca acgcaacagt ctggccaggc gagtttcttg 1620 aaatcacact accggacgac acacccactg atgccgagta tgcacttgaa cctcgtaccg 1680 acgcgccgag cgctcgtaga gtaaaaccat ctgctgtctg gcctccccct ggcatcgtta 1740 ccagcatagc cggaagaata cgtattccca accttacatc ggagccacgc tcactcaaac 1800 gtaacgagca cttctgtcaa gtccgccaac ttttcgaacc atcgaacgtc acaacgacca 1860 gcccagcccg tgcgttccct tctacagaca cccttcattc agcaaacgtt tctctagatc 1920 ctgacagttt gctaccatca gatatcaaag ccaagttcaa agccctccac catgaatacg 1980 accaggtgtt tgacgctaat atcgaaggct acaacggcca cgtaggcccc ttcgaagcca 2040 gagtcaacat ggggcctgtt gaaccccccc aacggaaagg gcgccttccc caatatgcac 2100 gtgaaaaact tctcgagtta caagataaat ttgatgaact ggagaatcag ggggtcttta 2160 aacgcccaga agacgtaggc atctccgtgg aatatctaaa tccatcattt ctagtccgca 2220 agccgaatgg aggttcacgc cttgtaacag cctttgctga tgttggaaga tacagcaaac 2280 ctcaaccgtc gttaatgcca aacgtcgatt caacattacg ccaaatcgcc caatggaatc 2340 acctcattgc gactgaccta accagtgcat tttatcagat ccctctgtca agagactctc 2400 tgaaatactg cggagtcgca actccctttc gcggcgtcag agtttacacc cgttgtgcaa 2460 tgggtatgcc tggttctgaa actgcgttag aagaactaat gtgccgcgtc cttggagatc 2520 ttcttgctga aggcgttgtt gtcaagcttg ccgatgatct ctactgtgga ggaaacaccc 2580 cacatgaact cttcagcaac tggaaaagaa ccctccaggc tcttcacgaa tgcaatcttc 2640 gcttgtctgc ctccaaaaca atcatcaacc ccaagaccac tactattctt ggatggatct 2700 ggagtgcagg caccttgaag gctagccccc accgagttgc tacgctagcc caatgtccaa 2760 ccccaactac cgttggtcgc atgcgttctt ttattggcgc atacaaggta ctttcacgag 2820 ttgtaccaca gtgctccaca tttctatcac ccctcgacga aattgtcgct ggccgggagt 2880 cacgagatac tattgagtgg actgacaatc tacatacggc tttctataat gcccagaagg 2940 ccctctcttc cacccgcgtc atcaccctgc caagacctga ggatttccta tggattgtca 3000 cggatggcgc cctgcgtgac ccaggaatcg gcgccacact ttacatcaca cgtaacggca 3060 acctacacct cgctgggttc tacagcgcca agctaaaagg ttcacagtcg tcttggttgc 3120 cctgcgaagt tgaggcactg tctatagcct ctgctaccag acatttcagc ccctacttaa 3180 tacaatctca tcaccgagcg tccatcttga ctgacagcaa accctgcgta caggcgtacg 3240 agaaattatg ccgcggcgag ttttccgcaa gcccacgaat ttcgaccttc ctctctgcag 3300 tcagtcagta ccaagccaca gtcagacacg tatcagggtc ctccattctc ccctcagatt 3360 tcgcaagtcg aaacgctcca ccgtgcgaag atgaagcctg tcagatctgt tcctttgtca 3420 aacagctcgg ggactctgtt gtcaggcgct catcaattca ggacgtcatt gatggcaacg 3480 agcggctccc tttcactagc cgatcagctt ggctcgcgat tcagtccgag tgtcctgact 3540 tacgtcgaac tcactcccac ctcaaacagg gcacccgacc ttcgaaaaag gtaacaaaca 3600 tcaaagacgt caaacgatat cttggtgtcg ccaccatcgc caaggatggc ttactcgtcg 3660 taaaacgtga aacaccctta tcgcccagcc gtgagtgcat cattgttcca cgtcgcgttc 3720 ttgacggcgt actcacagct ctacatattc agctatgtca cccgtcaact caccaactca 3780 agatggccac caagcgctat ctgttcgccc ttgatcttga gaaggccatc gttcgcgtgt 3840 ctcaagcttg ccaccattgc gcttctctcc gtacaagcag caaagcacgt atagaacagt 3900 cgtcttgcga ctcgcccgac gccattggag tttctttcgc agcagacgtc atacgtcggt 3960 cacgccagtt tatcctgatt gtacgagagt gcgtgacttc gtacaccacc agcttactgt 4020 taaccaatga gcaacactct acccttcgcg atgctctcat tcgtctttgc gtgcagatgc 4080 gtcccctcga cggtcccgtc gccatcattc gcacggaccc agccccagga tttcaagcgc 4140 taaaggaaga caagctcctg caacaccatc gattagtcct cgaaattgga cgcgcaaaga 4200 acgtcaataa gaacccggta gctgaaaagg cagtacaaga gttagaacgt gagatcctac 4260 agcttgaccc actagggggc cctgtctctg aagtagcact tgcagtcgct acagctaatc 4320 tcaacgcccg catccgatta cgtggtctgt ctgcgaggga aatgtggact cagcgtgacc 4380 agttttccaa cagtcaactc cccttccaag accaaaccct catagagaaa cagcacgacc 4440 agcggaattc taaccacgcg tacagcgaga aatctaaagc gcccaccgca gactttcgcc 4500 catccacagc aatcactgtt ggcgacctca tttacctgca tcccgacagg aacaagaccc 4560 gagggcgaga tagatatctc gtcgtagaca ctgaaggagg cttctgtaat atcagaaagt 4620 ttattggctc gcagttacgt tctacgtcat acagagtaaa aaaaacagat tgctacaagg 4680 ttccatctga agtaccggac aagacaccga ctgcagccta tgactgtgac tcttccgcag 4740 atgaagatga cactccggcc accaagaggc ttccgccccc agccccacca gatataccga 4800 cagcgataac tgatccacct tcccgggatg taccacccca aagtgatgcc gacgcctctg 4860 agacgagagc tatggactcc agtcactgtc cctccaatct tcaagatgat gacacatccc 4920 cacctaggag gtctacccgc gagcgtcacc ttcccttacg ttatagagat gacgacttta 4980 tcactgactt taaatagggc ttaatgtata aactatgcta gcaattaggc ttactgttat 5040 agtcctatcc tttaatcagt ccatcgtatt tacattgtac gccgtgaaag acattagttg 5100 tgtgatttct ctacagtaga tagtataaga gagaaagaaa ggaagtca 5148 // ID TE-21_NV repbase; DNA; NEM; 1351 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-21_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; TE-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1351 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1351 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1351 RA Kapitonov V. and Jurka J.; RT "A family of TE-21_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1351 BP; 383 A; 313 C; 237 G; 413 T; 5 other; aaaaaaagtc gagtattctc agatatactc ccgagggcag atttaagtaa gattcgaaat 60 cttcctctgt cttccttgcg tcttccccct aggggtaaat attcccgtgt cttccctaag 120 tattctccga atatactcaa gactataaat tacaacaagt aatgccctaa tatacaccgt 180 gtgaagacac gcggaagatg cgagtatgca tctaatttac accacatgga agacaaggtg 240 catactaagt gtctacctca tgtcttcccc taataatcca cgggtgtaaa ctcgtgtttt 300 ccacaagtct tccccggtgg taagacatga ggtcgactcc gcgtctactc gaatattcta 360 cagtgtaaga tctggaatat tccccatgtc ttacgcgcat attcgcatgt cttcataacc 420 cccctttggt aacccccctt ttgttcgtat tcgcatgtct tcccctaata atccacgggt 480 gtaaactcgt gttttccgca agtcttcccc ggtggtaaga catgaggtcg acaccgcgtc 540 tactcgaata ttctacagtg taagatctgg aatattcccc atgtcttacg cgcatattcg 600 catgtcttca taacccccct ttggtaaccc cccttttgtt cgtattcgca tgtcttcccc 660 taataatcca cgggtgtaaa ctcgtgtttt ccgcaagtct tccccggtgg taagacatga 720 ggtggacacc gcgtctgctc gaatattcta cagtgtaaga tckcraatat tatactacac 780 tctgaatatt acaatttgtt gcacaggttt ataaattttt atttttttaa taaatcagtt 840 tcttattgaa cttagtactg atacttagta ctgcctcact aagtgctgat tattgatgta 900 acgcgaaatt agctatagaa cgtatttatg tttttatcac tggcttagca acccatctac 960 tactaactat gtaagcatgt tatgggattt gttattctga agacattatg cacttgtatt 1020 ttacatttca ctgacttaca tgtaaaaaaa ttgttaataa actattttta acatgaatat 1080 tatgtccaaa gttttactgt ctccaaacgc aaattatcac cacgtttgcc cgacggacac 1140 gagtttgcgc cagcgaatac tagcgaaaga cgcggcgaac actcgagtaa gcgcaaataa 1200 tcacctatag gaaawctagg raatatatat ttagatatgc acatataatc accttgtctg 1260 tactgcggaa gacacgcgct tacgctagcg aatactagcg gaagacacgg cgaatatttt 1320 agtaarcgca aataatcacc cataggaaaa c 1351 // ID Helitron-N2_NV repbase; DNA; NEM; 953 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N2_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N2_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-953 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-953 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N2_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 598-598 (2007). XX DR [2] (Consensus) XX SQ Sequence 953 BP; 179 A; 216 C; 218 G; 340 T; 0 other; ttgctcggag ggagcgcagc gaccggagag caagtctaat cttggtatcg catatgattt 60 ttcgtgtcca caccacaggc ttcccagtcg gctgatttgt atttttattt catgctgatc 120 agcggtcttt ttagcgcatg cgcgagtttc atatagtgga tgcgattttt cgtgtccaca 180 ccacaggttt cccagtcggc tgatttgtat tttgatttca tgctgatcag cggtcttttt 240 agcgcatgcg cgagtttcat atagtggatg caatttttcg tgtccacacc acaggcttcc 300 cagtcggctg atttgtattt tgatttcatg ctgatcagcg gtctttttag cgcatgcgcg 360 agtttcatat agtccatttt tcgtgtccac accacaggct tcccagtcgg ctgatttgta 420 ttttgatttc atgcagatca gcggtctttt tagcgcatgc gcgagtttca tatagtggat 480 gcgatttttc gtgtccacac cacaggcttc ccagtcggct gatttgtatt ttgatttcat 540 gctgatcagc ggtcttttta gcgcatgcgc gagtttcata tagtggatgc gatttttcgt 600 gtccacacca caggtttccc agtcggctga tttgtatttt gatttcatgc tgatcagtgt 660 tttttttagc gcatgcgcga gtttcatata gtggatgcca tttttcgtgt ccacaccaca 720 ggcttcccag tcggctgatt tgtattttga tttcatatca gatcagcggt gtttttagcg 780 catgcgcgag tttcatatag tggatgcaat ttttcgtgtc cacaccacag gcttcccagt 840 cggctgattt gtattttgat ttcatgctga tcagcggtct ttttcgagaa cccctgtact 900 gaaacatgtt cgtcccgtcc tccgagcatt cactttctat tagaaacttc tag 953 // ID TE-20A_NV repbase; DNA; NEM; 251 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-20A_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; TE-20_NV; TE-20A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-251 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-251 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-251 RA Kapitonov V. and Jurka J.; RT "A subfamily of TE-20_NV transposable elements from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 251 BP; 65 A; 57 C; 50 G; 79 T; 0 other; ttattatatg gctacgatag tacgcgcgct gtgattggct aattggtagt cgtgacattc 60 ccgtattgcc cgtctctgag ggcattacgg aattgcgtat tgccctacga aaaaaaaaat 120 tcacaatctt ctgtttgttg aattttttcc accttcaaac tgcaaaattc gcaaagcctc 180 ggtcgatacg ccaaagcctc agtttgatat ttcccggcat gacctcactc tcggttagta 240 agtagttaat a 251 // ID Kolobok-N23_NV repbase; DNA; NEM; 913 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N23_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP148; Kolobok-N23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-913 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-913 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-913 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N23_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~91% identical to the consensus. It was reported CC originally as the NVREP148 transposable element [1,2]. XX SQ Sequence 913 BP; 289 A; 164 C; 197 G; 263 T; 0 other; ggtcgctcgc gcgttaatca acagatcata aacagagggc gttatcaatt ttaaacttcg 60 cacagaaccg tcaatgttta tgcgattgct ctagattttt taccaaagac gacccaatgt 120 atggagagtg cacacattta aaaattgtat ttgtattaac acgcaataat gtagtagcac 180 ataaaaagta aacaacatgt tttgcactta tttgagactg acgcaaaatt gagcgttagc 240 tttttgacga cactaccaga atcagttcaa tatgtggtga tacagcctct gtgaaagtta 300 gaaaaaaatc tgtggaaggg aaaaaaagtt agatatatat ttagaatttc gacccgaaaa 360 attgacggcg aagttcagtc cgttcgaaaa gcgtttatgt tagcctttat tacccgagtt 420 tttgcaaata caaccgccaa ttgtgtacga taactcatgt caaatttggt ttggctatgt 480 tcaatagaaa gaaagttgta acattttgaa taacactacc attttagaac atctttccgc 540 aaaactgata aaaacacatt ttccgcaata tttcaacaat caaccgtgga attttagaga 600 tatttgtcaa tgataaaatt cggtccttta gacaacttct atgatcgact agactacata 660 gaagcgcttt gttggggcag gggaattttt taaagtgagg gactatctcg ggttgtgttt 720 tcgtggtggc gggggttgtc aatttcacgc cacacagcgg tatgcaaatc gagagcgtgt 780 tggaaatgca cacatcagtc aggggggagc aaagacgagg gtcaagcgtg agctgtttac 840 aatacaacac catatgatct cgtgcgtatc agcgtgctca gtttgtgatc tgttgataaa 900 cgcgcgagcg acc 913 // ID BEL-4-I_NV repbase; DNA; NEM; 5331 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone BEL-4_NV autonomous DE LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-4-I_NV; KW BEL-4-LTR_NV; BEL-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5331 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5331 RA Kapitonov V.V. and Jurka J.; RT "BEL-4_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 372-372 (2007). XX DR [2] (Consensus) XX SQ Sequence 5331 BP; 1354 A; 1264 C; 1570 G; 1143 T; 0 other; agttggtcct tccgagccgg atctattgaa gaatattgga gtagccagaa tgccagaaac 60 ccggtcgaat gtggagaatt gccgagcgaa gagaaaagtc gtcaggtcca attgcacgag 120 gaacataaac aagatcaaag aattgctccc cgacaagaaa aacaagtcaa aagtgaggca 180 gttcgcaaac aaccttgatg aggtaagggg taaagcacgt gaattaactg ctgagctaga 240 ggagctcgat ccggaacaca tagaagcgga cggggactgg ttacaagacc tagaggaagc 300 cgtaagtgag attatgggag aagttgtaga ttatttcagt gaagccgcta gttcagagcc 360 tgctaacagt agcgatgtca tgggaaatag taatagaagc ggtttgaagg gagttcaggt 420 cccacttttc aaaggaaatc gggaagactg gccatatttt tggggtattt tcaagtccct 480 tgtgcatgac aataaaacgc tgagtgagcc tgtgaagctc gcacatttga acaactccct 540 cgctgacaat gtcaaaattg tgatttcggg tctaaccgga ggtcctgggg attatgagaa 600 gtctgtcaag ttgttagagg gaagatttgg ggacccgagg gatgtgatag aggcccattt 660 aaaccgaatc acagactggc ctgctgttag gagtgatgac cgcacggggt ttgaggggtt 720 tgcagacgcc ttgcaggccg cagtgtttgc gctagataac cctacatttc aacatgagct 780 aaagagtctg ccactttgca cccagttagt gcgcaaactg cctgctgaag aaagggatga 840 gtaggtgcgg caagtagaga gggggcaggt gcaagaggat ctaaaggggt tagctgagtg 900 ggcgcagaca cggtcaaaga cactgcgcat gcgcgagcgc tataatgaac agcccacagc 960 taaaagcgtg cccgcagcta aaggtgcgtc ccagcaaagg cgacaccaga ggtaccaaac 1020 catgcacgtt ggtgagaagc accaacgaaa atgtgcccta tgtgaaaagg atcactcaga 1080 gtcaaaatgc ccaacccttt taccagcaac ggtagacaag cgctgggaga tggttaagga 1140 gaaaagagtc tgttttggct gtctcaggga gcgacatcag cgacgttcgt gcagtagatc 1200 ccagaaatgc ggggttgatg gttgtgactg aggtcatcat taccttttgc attcctttgc 1260 tcccaaacaa ccacctagag agcccttaac tgtcgaactt cctccagggg ataaaggggt 1320 tcattgcggg aaagcgcaag ccagcacgcc aagtgtcaat aaagtcgcgc tcaaaactgt 1380 tgcagtacca tttaccagtg actctggcca agtagttatg ggattagtac ttttggattc 1440 aggcagcgaa actacccttg taagaactgg gtttgcaaag caactgggga tatcaggtcc 1500 taggcaaaac ctaaccgttg acacagtagg gggggttagt accacggtca agtcagagcg 1560 cgtgcatcta ccatttgcat catctgcggt taaaggaact gtgagcgcgt ggacaataaa 1620 aagcatctgt gctcctctca gtgctattga ttggtcagag gtcaagcgac gctatgcgca 1680 tttgtgtgat gtcccagtag agaacacggg caacgggacg gttgatgttt tgttaggcct 1740 cgacacagca gccttaatgg ccccattgga agtcaggagg ggtggggtca cagaaccgta 1800 tgctgagaag acaccgctgg ggtgggttat cgcgggccca gtctcagact ccgagggtgg 1860 gggaaagcgc atactccgcg cacacgtgtc agaagccgaa gacgacacaa atcacaacct 1920 gcgcatgttc tgggaagtag acacgtttgg cgtccgcgtc gaggaatcac caccatacag 1980 ccgcagcgaa cagagagcct tggataagtc atgccgacta gtggattcag gttacgagtt 2040 agcgctcttg tggaaacctg accgacctcc attacctaac aactacgcca cagccttgag 2100 tcgcctagag tcagtggagc gtcgcctgca gaaagacccg gagctggcgc aagggtataa 2160 gaaagcgatc agcgcgtacg tcgagaaggg gtttgcccgc aagctctcag atgaggaacg 2220 ggtggaggat acagagcaat ggctgctacc ccatcacccg gtgttgtcgc cacacaagcc 2280 tcttccaaga gtcgtgtttg attcagccgc agtgcacgat gggatctgtc tcaacgactg 2340 tctagaagca gggcctagtc tacataacga tctaccaggc gttttgatgc gtttccgtga 2400 acgacctgta gcgctcgcgg gtgatgtgtc agacatgttt tgtcatgtgc gcttgcgtac 2460 agaggaccgc aagtaccacc gctatctttg gcgagatcta gagacggaca agccgcctga 2520 tgtttatgag atgaattgcc tcgtgttcgg agataagtcg tcgccatgtg aagcgaactt 2580 tgccgtccag cgtacggctg aagacaacaa ggagcaatgg ccagacgccg ccgccgtagt 2640 caagcgcgac atattcgttg atgacttata cacgtcctgt gaggatgtcg gagaagctgt 2700 aaagctgcgc gaggatgtta ccgcacttat ggctgaaggg ggatttccca tgcgtaagtg 2760 gatgtcgtcg tctgccgagg tgttagctac cgtaccggag acagagcgag ccgtccgtaa 2820 cgaggcccta gagatgggag agctgccgca aggtcgagcg cttggggtgc gatgggatcc 2880 tcagtcagac accctcggct ttgcatttgc acacgtcgaa agaccccccg cagaagaaac 2940 aaaacggggt gtcctcaaga aactagcggg attgtatgac ccgttaggat gggcaagtcc 3000 atacgtggtt cgcgccaaag tcatgttgca gcgtacatgg tcacgtggca tagactggga 3060 tgagttacta ccgtcagatc tgcgcttaga gtggagcaag tgggaggcgg agatggttgc 3120 cctaaagtcc tttgttgtcc cacgctacat ttaccgtcag cccagtaagt taaggaagaa 3180 gcagttagta gtgttttgcg atgcgtctga ggaagcatgc gccgcagtcg cctacgtgcg 3240 cgcaacgtcg acagtcgggg aagtcacgtg tcatctagtc atcgcaaaaa cgcgcctcat 3300 gccgttgaag ccgatctcaa tcccgagagg ggagctaatg gcgtgtcagc tagccgtacg 3360 actcgccaag gccgcttgtg tacagctcag tttgagtatg cgagaggtga tctacctttc 3420 ggactccact accgcactgt ggtggattcg tggcgagccg aggaatttca agccgtttgt 3480 cgccaaccgt gtagctgaga tcttgacaga gagtgacccc atccagtggc accacgtacg 3540 aacggagatg aacatcgccg atgtggcaac aagaggagcc tccgcaggcg acatacaagc 3600 ccacacaact tggattgaag gaccggagtt cctgaggtta ccagtgcacg cttggccgat 3660 agatgacgtt caaaccactg caccgccgtc ggaaaagtct gagatgcgaa agaaggtcct 3720 gagagtgcag caagaagcaa acgccccttt gatcgaccct gctgcgtttt ccagttggtt 3780 aaagctgcgc cgagttacgg cctagatcct gcgtttcctg tataacctgc gcaaccgaga 3840 taagcccaag tcgggagcac taagcattga agagttgaag acagaggagc tgtactggat 3900 caagtgggca cagagagaca ggttcgccag agaaattgag tcgttggaga agggacagcc 3960 agttcctcga gcaagtcgca ttgcaaacct cgacccacag cttgtagatg gagttctccg 4020 cgtcggaggg aggatagacc gggccgacat accatgggaa acgaagcacc cgataatcct 4080 cgaccacgga caggacgtca cacgcctgat agtcaccgag taccatcaga agcttcgcca 4140 tgttggagtg gagcatgtct tcaaccacct acgcgagaga ttctggatac tgcgtgggcg 4200 ggcagaagtg aaggagtgca ccattaagtg cccactgtgc catcgccgtc gcgtccagcc 4260 gatgacccag aagatgagtg accttccagc cgttcgtctt gctggtgtca gcacgccgtt 4320 caagcatgta ggcttagact acgcggggcc gtttcaagtt cgtgttggtc gaaatcgcgt 4380 ggagaagcgt tacgtgtgcc tatttacgtg cctgcacatg cgcgccgtgc atctagagac 4440 cgcgcatagc ctcgatacag attcctttat tatggctttg cgtcgctttc gcgcccgccg 4500 aggtaatcct gtcaggatta tgagtgacaa tggttcgaac tttgtaggag ctgagcgaga 4560 gttgagggat gcactccagg agttgagtca agaacgaatc gcagatgagc tcagtgtgca 4620 cggtgtcaag tgggacttca atccgcctga tgggccttgg ttcggtggag cctgggaagc 4680 gttggtgaag tctaccaagc gcacgatgag agtgatgtta ggaaacgtcc ttacagtaga 4740 tgaagtcttc cgcactgttc tcgccgaggc agagtctata ctgaactcgc gtccactggt 4800 gtacggggga agtgtgtcat ctcctactga tgtgagtgtg ctaacgccaa accacttcct 4860 tcatggatgt gcgagtacaa attccgcgcc cggtgaattc agcgagagag atatgtcact 4920 tcgtcgtcga tggcgccaca gtcagtactt ggccgatcag ttttggcgcc ggtggagaag 4980 agagtacgtg ccacacctgg tccagcgcag caagtggcgt gcgatacagc gcaatcttcg 5040 ccgcggcgac cttgtgttga tcgtggagag agatgtaccc agaggcaagt ggcgcttggg 5100 acgagttctg gcaccgattg ctagtcctga tggtcttgtg cgatctgcgg aagtcgcaac 5160 tacgaaagga acattgatcc gacctgttgg gaagctagcg ctcctggaag caagccagga 5220 acagtgacac tgttatgacc gaacagctaa gacgatagtt acgttattgc tattgatatt 5280 gaactgtgtt agatagtgac gtttcacccc ggatcacgtc acgggtgggg g 5331 // ID DNA-7-19_NV repbase; DNA; NEM; 754 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-19_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP469; DNA-7-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 13-268 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 13-268 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-754 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-19_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Originally, portion of this transposon was reported as the CC unclassified NVREP469 transposable element [1,2]. XX SQ Sequence 754 BP; 214 A; 151 C; 157 G; 171 T; 61 other; cccggcgtaa tcaatcgaac aaatccgaac aaaatgccaa tcgaactcaa tcgaatttca 60 atcgttcgat tgttcgcgat tggttcggca atcgaacaaa atcgaacacg ttttcggtga 120 gttcgatttc cgaacacaat cgaactctca accaatcgaa cgattcgatt agttcgattt 180 cgttcggttg attgaataac tggaggcgag gggaaaacat gagtaaagcc agtatttcga 240 tgagctactt taatttcaaa gtctaaaaat agtattcgaa cagtaagcgg taataattac 300 aaaccgtmaa agaggcaaaa aaaacscsgg cagcwssaww ksgaccascg aggctscgww 360 cttacamcct mawagwwaca wgawctmsgt mcggtgwtat aakwgccscc scmccmcscc 420 acsmmcwggc twaggagacm tgawwgcwwc ctwgccmcaa aagascawtm waatttcmtw 480 ckctggkcaa aawcagcgca gtacaggaag gcwgctggcg ktcttkcatm mgttgcgcgc 540 gcattgtttg tcagattgaa ttgacagcat gaaaactgag atcggaactt gcaattgata 600 atttcggtcg aaaaaagttc gattaccgaa cgcccgattg tgttcgattg gaaaatattt 660 tgggttagtt cgattttgtt cgattgccga accaatcgcg aatmaatcga acggttgaaa 720 ttcgattacc gaacgttcgg ttgatwasgc cggg 754 // ID RTEX-5_NV repbase; DNA; NEM; 1265 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE RTEX-5_NV non-LTR retrotransposon - consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; NVREP379; KW RTEX-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 523-1265 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 523-1265 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1265 RA Kapitonov V. and Jurka J.; RT "A family of RTEX-5_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [3] (Consensus) XX CC There is not enough sequence data to recover the 5'-terminal CC portion of this retrotransposon. However, classification is CC reliable, given ~65% identity to known RTEX elements. XX SQ Sequence 1265 BP; 477 A; 244 C; 218 G; 326 T; 0 other; cacaggactg caaaataatc taaatagtct ggaagaatac tgcaaaaata atagtttatc 60 cgttaatgaa agcaaatcta agataatgat atttaatcct agtggcagaa aactgaatcg 120 ttaccttttc catgcaggta gtaaacaact tgaaaacgtt acaagatata aatatttagg 180 tttgactctg agctccacgg gatcctttac catagcaaaa caagagttaa aaaagtcgcc 240 ctaaaagccc tatattcatt acgtataaat atgggcacgt cgtttagaag gaaccttccg 300 ctcactattc acttatttga cacattaata aaaccagccc tcacgtatag tgcagaaata 360 tggggtttgg acacagtcaa gtacaacgag ttacgtgacc cgatagagca agttcataca 420 agattctgta aattaatcct aggcgttagc agaagagcca caaacaaagc ttgcagagca 480 gaactaggac aattcccagt tatagtcgag ataaaagcaa aagcgatatc attttgggcg 540 cgccttctga cacttgacga acacagaata gcaaaacaag catatctgga ccaattaagt 600 tttacgaact cgcggaactg ggcaatggaa attaaatcac ttttgtttca aaacggttat 660 ggctactgtt gggagtacca aagcgaggct accttagaca ctaaatcaat aaaacaactt 720 tataaagaat tcaaacagag gttagaagat atcgaaatac aagattggag atcaagcctt 780 ttcgacgata attccagacc aattggaggg aacaaactaa gaacattcag agaattcaaa 840 tcagaatata aactagagga ttatttacta aaagtatcga atatagaata tcgtagggca 900 ctaacaaaac taagaataag cgaccacatt ctacaaattg aaagaggtcg ctacaataaa 960 aactatataa caccagaatc aagggtttgc ccgcgctgtc agactatgga aaacgaagaa 1020 cactttcttg tcaaatgccc aatttacaaa gaacttagaa atactctttc gcaacaacta 1080 aatagacatt tcccaaactt tacagattta atagccccca aaaaacacca cagcattgta 1140 gctaaataca tttatgactg ctttttaatt aggcaatctc acttataaat attagagaat 1200 aatggcctat gtacatcttt gttcacggca ctctaataaa atctgtctgt ctgtctgtct 1260 gtctg 1265 // ID Gypsy-6-I_NV repbase; DNA; NEM; 4077 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-6_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6-I_NV; KW Gypsy-6-LTR_NV; Gypsy-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4077 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4077 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-6_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 567-567 (2007). XX DR [2] (Consensus) XX SQ Sequence 4077 BP; 1098 A; 897 C; 1019 G; 1063 T; 0 other; tctggcgacg agaaccggat ctgtggaaca ccatgagtgt catcggtcaa ctaagagagt 60 tcgaccggca aaaagagtcg tttgaagctt acattgagcg gcttgaaaac ttcatgaagg 120 cgaatggcgt gcgaaaggag aacgaggtag ctgtcttgct cactgcaata ggtcctgaaa 180 cgtacggact gttgaggaat cttttgactc cggaaaaacc tgacaccaag acatataaag 240 atcttgtgga tattttgagt ggccatttgc atccgaaacc cttggttatt gccgagcgat 300 tcaattttca taaccggttt cgtcacgact ccgaaacagt tgcggacttt ggcgcccaac 360 taaagaagct ttcaactcac tgtgagttcg gaactttcca agatgaagct ttgagagacc 420 gttttgtatg tggtctacgc caggaagcga ttcaacggaa acttttaacc gagaaaacct 480 tgacgtttgc gaaggctttg gagatcgctc agtcgatgga aatggcggaa tcgaagtcgt 540 cggaattgaa gggctctgga tcgtccggat cgggctgcgt tgaagaagtt catcagcttg 600 gaaaaaagcc acagaaacac aagaaattca cacagaacaa gggaggaaag cccaaaacag 660 catgtcatcg ttgtggcagt gctgaacatg atggtaaatc ctgtaaatac aagaagtata 720 agtgtgataa ttgtggcaaa gtgggtcacc taaagagagt ctgtcagtcc aaggagtgca 780 aggaaaccaa gtatgttgaa gtttcagtgg acaatgacca agaagatgag tcattggggt 840 tcttttcaac tcgtgaaccc agcagcaaag cagtgacagt aactatcact gttaacggaa 900 aggaaattcc aatggaagtt gatacgggag ctgcacgcac agtcatccct gaaaagttgt 960 tcaaagagaa ttttggacat ttgaaactca agaatgcaag tacctcatta aagacttatt 1020 ctggaacagt gttaccttta attggtgaaa ccgaagttct agttgagtac gagggtcaaa 1080 gtgccaagtt gcctctgatt gtggcaaaag ttgagagcaa accagctatt ctgggtcgta 1140 attggctcag tgttgttaag ctgaactggg agcacctttt tagtgtttct tcttctgatt 1200 tagttcatga actgactgca cggttcaagg gtgttttcgg tacgggcctg ggcaaaatca 1260 aggagtttca agcaagaatc aatgtgcaac ctgaggccac gcctaggttt cataaggctc 1320 gccccgtgcc gtatgcccta aagccagcag ttgaagcaga gttggatcgc atggaaaagg 1380 aggggatcgt gacaaaagtg tcccatagtg agtgggctgc cccgttagtg gtcgtcccta 1440 aggcagatgg tggtgttcgt ttgtgtggag actacaaagt tacggtgaat ccagttttgg 1500 acgtcgacca ataccctctg cctaaccctc aagatttgct cagtgctctg gcaggtggta 1560 ccaagttttc taaacttgac ctcaagcatg catatcagca actgcctctt ggtgaggagt 1620 ccaagaagtt cctcactgtc aacacctgta aagggctcta tcagtataat cggttgcctt 1680 ttggtgtcgc aagcgcacct gctgtatttc aatctactat tgacaccatt ctcaagggca 1740 ttgatggtgt tgtttgctat atcgacgata ttttgatcac tggaaggaat gaccaggaac 1800 acaaagcaag attagaggcg gtgctggaaa gacttgagaa atacggaatt tctctcaagt 1860 tgtcgaaatg cagtttcctg gaggacaggg tcggttttct cggtcatgtc attgatgccg 1920 agggtgtcca cccttcacca gagaaagttc gggctgttgt ggatgctcct gcgccaacta 1980 atgttaccga gttgagatct tttctgggta tgttacagta ctacggaaaa tttctcccga 2040 acttgtcaac attgctgcac ccgttaaaca acctcctgcg ggacggggtt gagtggtcat 2100 ggctgccaga atgcgagcaa gccttcacct ctgcaaaaga gctcctgcaa tcagcgaaag 2160 tcctaactca ttatgacgtc aatcttccaa ttaaattggc ttgtgatgca tcaccctatg 2220 gcattggagc cgttatttca cacgttatgc caggaggcga ggagcgcccc attgcttttg 2280 cctcaagaac cctcactggt agtgaaaaga attatgccca gctagagaag gaagccctgt 2340 ccattattta cggagttaaa aagttccacc agtttttata tgggcgacga tttattctgg 2400 agaccgacca taaaccactc ctaacaatct tagggccaaa gtcggcaatt cccacactag 2460 ctgcggctcg tcttcagagg tgggctttaa ttttagcatc ccaccagtat gatgtcgttt 2520 accgtaaagg tgtcgatcac agcaatgcgg atgggctgtc cagacttcct gttgataagc 2580 ctagagtttc agaggaaact gaaatttatc atttcagtta tgtggatgac ctacctgtaa 2640 cggcaaggga cattgctatg gaaacaagaa aggattctgt gttaagcaag gtacttcatt 2700 atgtgaaaag tggctggcca cagcagacac aggaggagga attacgtcct tatttcaatc 2760 gtcgattgga actgtctgtg gaacaagact gtgttctctg gggtctgcgg gtcattatcc 2820 cagaggcatt tcaggagaaa atcctgcatg atcttcacgc agatcaccca ggtatgtgtc 2880 gcatgaagtc tctcgcacgc agctacctgt ggtggccaaa gctcgatcag gctatcgaga 2940 acatggtgca ccattgtgag gcctgccagt ctgttcgtaa gcagcctgcc acagcacctt 3000 tgatcccatg gaaatggcct gttagagttt ggcaacgagt gcacatggat tatgctgtta 3060 aagacggagt gaactttttt gttgttgtcg atgcacactc aaagtggcct gagattattg 3120 ctacatcttc cactactgca cccaagacca ttgaaatgct ggctggtcta tttgcatcac 3180 atggattacc agaggagatg gtctccgata acggtccacc gttcatttct agtgagctgg 3240 acatgtttat gaaaagtaat ggaatacggc atacacgggt ccctcgctat catcccgctt 3300 ctaacgggga ggcggagaga tatgttcaaa ctctcaagca ggcgttactt accagcaagt 3360 ttgatcaggg gaaatcgcta cagcaacggc tgtcaagttt tctgttttcg tacaggaaca 3420 cgccccatac ggttactggg cagacacctg ctgagttgtt cttgaagcgt aagcctcgca 3480 cacgtttggc attgcttcag cccaatctgg cccagcatgt tgaggagcgt cagatgaagg 3540 aaaagcaaca gcatgatggt ggccgaacaa aaactcgtga gtttcttcca ggagacattg 3600 ttttagttcg taacttcaga ggaaaacaca agtgggataa aggaacagtg atcttgagaa 3660 tcggtcccct agcataccag atacgtattg gaggacgaat gtgtcatgta catgttgatc 3720 accttctagc agctggtgat gcggagcaca catccccacc aactacagct acagctatga 3780 ctgggagtgg ctttgttttg ccctctactc cagtagtgtc ctctaaaccc attcttcctg 3840 agcctgaggt tacccctcta cctgaagtct cacctaaatc ttcagagact gttgttccta 3900 catgtacaac tgagtcacca cctgacgtgg catctacacc tgtgaggcgt tacccaaggc 3960 gtacccctaa acctgtagta cgtctggact tgtaaagaga ctattagatg tatttagctc 4020 tctagtcatt gacattgttt acatgtttgt agctagttca ttccaggaac ggggaga 4077 // ID R2-2_NV repbase; DNA; NEM; 2277 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 28-MAY-2010 (Rel. 15.06, Last updated, Version 2) XX DE Starlet sea anemone R2-2_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW R2; Non-LTR Retrotransposon; Transposable Element; R2-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2277 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2277 RA Kapitonov V.V. and Jurka J.; RT "R2-2_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 654-654 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 1..1047 FT /product="R2-2_NV_1p" FT /translation="GTQPVQLCSGRTIFLPKETVPETEQQHRPLTIASAVI FT RLFHKIMAARLNTTVNTNEAQKGFKAGDGIAQHVLTLRAIIDSAKSDLKPL FT NLVFVDVRKAFDSVSHETILIALKRLGVPPPLLSYVCDLYSRSTTIIQHGG FT RGSQPISVRQGVKQGDPLSPFIFNAVIDWALAELDPLIGVKFGGIMVNALA FT YADDVVLLAETRAGLSKIVSAFERNLALGGLTISSGPKGKSATLSIAVDGH FT AKKCVVVDEPFLTVAGKVVPSIGPTSDYRYPGILISAGGARVRTDCREILT FT EGLKNITRAPLKPHQRLILLKTYFLPRFMHQLVLAPVNDGFLRWFDNCVRA FT ACFTLG" XX SQ Sequence 2277 BP; 556 A; 526 C; 601 G; 594 T; 0 other; ggcacgcaac cggtgcagct ctgctcgggc cgtacaatat ttctaccaaa ggaaacggtt 60 ccggaaacgg aacaacaaca tcggccgctg actatcgctt cggcggtaat caggctattc 120 cacaagatta tggccgccag gctaaacacc acggtaaata ctaacgaagc ccagaaggga 180 tttaaagcgg gagatgggat tgcccagcat gtgttaacgt tgcgggcgat catcgactcg 240 gcaaaaagtg acctaaaacc gctgaatctg gtgtttgttg atgtcaggaa agcatttgac 300 tccgtcagtc atgagacaat tctcatagcc ttgaagcgac ttggagtacc gccaccgtta 360 ctgtcgtacg tgtgtgacct gtatagtaga tcgactacga tcatacagca cggtggtcgg 420 gggagccagc cgataagcgt taggcagggg gtgaaacaag gtgaccccct gtctccgttc 480 atctttaacg cagttatcga ctgggcccta gcagaactag atccgctgat tggagttaaa 540 tttggaggaa ttatggtgaa tgcacttgcc tacgcagacg atgtggtgtt attagccgaa 600 acaagggctg ggttgtctaa aatcgtgtct gcctttgaaa gaaacctagc actgggtggt 660 ctaacaatta gctctggacc gaaaggtaaa tccgcgacac tatctatcgc cgtggatggg 720 cacgcaaaga agtgtgtggt tgttgacgag ccctttctta ctgttgcagg caaggtagtc 780 ccttctattg ggcccactag tgactacagg taccccggga tcctaatatc tgccggaggt 840 gctagggtgc ggacagactg tagagagatt ctcacggagg ggctcaaaaa catcactaga 900 gcacccctga aaccacacca acggcttatt ctacttaaaa cctacttttt accgcgcttt 960 atgcaccagc tggtactcgc cccagttaat gatggtttcc ttcggtggtt tgataactgt 1020 gtgcgagcgg cctgtttcac tcttggctga aactgccaca cgacacgtgt atggctttct 1080 ttcacgctgc tatattggac ggcggtctgg gtataccgtc cctaagttat ctggtgccac 1140 ttctgaaacg agaccgattc ctcaaaatct gcgaggctac ggactcttgc tcaaaggagt 1200 tgcgtggtca ccccttctta gccacccttc tgaatcgccg cggactccca accaagatcg 1260 gtggagtcct agcatcggat aagggtgcgg tccggagggg atgggcagct gagctgcatg 1320 ggaggctgga tgggaagggg ctagggcaat caagaacagt gccaggtgcc catgagtgga 1380 ttgagtctcc ccccccccta gaatgggagg tgcagagttt gtcggggcca tccgtgcacg 1440 cgggggactt cttttctcta agacccgggc ggcgcggggg cggcaggtgg ctaatgttaa 1500 ctgtgaatcc tgccttcgcc cccaatccgc acagcacatg gttcaaattt gtcccaagtc 1560 gcatggtgcc agaattcgcc ggcacgacgg cattgtcgaa attctagcta aggctgcaac 1620 tcgaaagggt ctcatggttc aatgtgaacc cttgatctca gaccctatgt acggtctgcg 1680 aaaacccgac ctcgttgttg ctggggaaca acaggccttt gttattgatg ttactgtctg 1740 ctctgaaaac atagatccag atgcggcaca tcggcagaag tgcttatact ataacacgga 1800 gggtgtcgtg gagtgggtta agaagaagac tggttgtagg gaagtcgtct ttggtgcttg 1860 tgcagtctca tggcggggtg tgttcagtgg tttgagtgca gactttctgg tcaagaagtt 1920 gaggttgcct aaaggggtaa taccagtgtg cgccctgaaa gcagtcactg ggtcagctaa 1980 ggttcacaaa ttttataaca gcaccacttt catctaattg cttgctcagt tggaactttt 2040 ctcattcata ctagtaatta gccaatattg gatccttttt atttttctat ttcactattc 2100 attttagtaa ttacttagct cattgaaagg cgtcggccag cctaagggcc taatttctac 2160 gtaattttat atttagtatt attagaatta gtttttagct aaggtagtta aataaaggcc 2220 taggccctgg taataatatt taaaaatcct tattttgttt ttaaaaacgt agaacac 2277 // ID DNA-7-17_NV repbase; DNA; NEM; 874 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-7-17_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP256; DNA-7-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-874 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-874 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-874 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-17_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, it was reported as the NVREP256 unclassified DNA CC transposon [1,2]. XX SQ Sequence 874 BP; 265 A; 173 C; 153 G; 283 T; 0 other; cacaggttcc ccaaggtaac attgtatttt acgggttcat ttatagctac agttaatatt 60 tggtgagatc caataaaaca attgagacca aaaattaata aaatacttcc aaacttttct 120 tacctgtttt tggagttgtt agttacatcc ctgtgaagtt tccatccatt tggggcaata 180 ttgagtgatt gtattccccc catactaaga gaagagaaag gtagcactct aaaatgctga 240 aacgggcagt agaattgaaa ctttaaaagt tcaccaaaat tcctgcaaat tatacttata 300 ctttacactg ccacacagaa attatgaatc cagttgacta actctttgcg tacctaaaac 360 gccattcttt acctgccttg ccttatcacc tatgtttgat acaaacccat gggttggatt 420 ttcaaccgtc ctgacaaaac agcttgttta catctccctt cgggctagcc tgtatgcagt 480 ctcaatttgc acgtggagtg gggccttgct gtcaattccc attggtcagt gacggcgcag 540 ctttttgggg aagggggatg tagatatact gtagatgtat cgttataata ttgtttacat 600 gaattttggt gaaatttcga atttccagtt ttctagaaac gattttctac cgcccatttc 660 gccaatttta gactacaatc tacaatcgct caatattgcc ccaaatggat tgaaacttca 720 caggatgtaa ataacaactc cacaaacagg taagaaaagt gtgaaggtat ttaattatat 780 ttttcgttcc atttttttta ttgtaaccca ccatatattt gcagtaactg tgaatgaaac 840 atgtaaaata caacattagc ttgagcaacc tgtg 874 // ID Harbinger-N2_NV repbase; DNA; NEM; 472 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; Harbinger-N2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-472 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 160-160 (2007). XX DR [1] (Consensus) XX CC Harbinger-N2_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. This family is relatively CC old; its copies are ~10% divergent from the consensus sequence. CC The Harbinger-N2_NV transposon is characterized by 120-bp CC terminal inverted repeats and TWA target site duplications. XX SQ Sequence 472 BP; 142 A; 100 C; 105 G; 125 T; 0 other; aggtacggta atacgagcag caaaatcgta caacttttgt ggcagcattg ctgcaaaaaa 60 agttcgtaag tgaagttgcg cgttttacta ccggcgaacc aacttttgtc gcagcaattt 120 ttttgttgca agttgaaaaa gtttgctgca gaaagtagaa gatggttcta ctttttgcaa 180 caaaactcgg agatgtagcc cgtattacta catcaaccca acttgtctcg cagcaaaaag 240 acgtcaagca tacgcaagca gttgcattag cgtttgtgat tggttgaacg aaagtcacac 300 atcagtgtca cggaggaaaa aacgatggcg gatcaacagc aagaaccagt ctatcctttg 360 ctgcgacaaa agttggttcg ccggtagtaa aacgcgcaac atcgccttcg aacttttttt 420 gcaaatgctg ccacaaaagt tgtacgattt tgctgctcgt attaccgtac ct 472 // ID DNA-7-10_NV repbase; DNA; NEM; 1112 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-10_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1112 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1112 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1112 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1112 BP; 328 A; 220 C; 255 G; 309 T; 0 other; cacagggagc tcacctctac ggtttgaata aagttagagt tgttttttta gctttgcgtt 60 gttgattatt tttagtgcgt gtgtgcgttt gtatctcttg tctacttttt cggcgcccgg 120 tgctttctgg cgctctctca ttggttagcg gtctaacggc cgtctcgact gcgaaatggc 180 ttccgtgtca cgacatacct agtaaaaaga gacaagggat gaaactctcg ctaaagtttc 240 tgccgctagc gtcttgagca gaggtggacg gaagtgaaat gagcggaagt ggttttaaag 300 agtgacgtca cctttcaaaa actcaacggc aatagaaccg gcaaaatctt tgaaaatggc 360 ttcggcattc gacatcgtca gctggtaaat aacagttttg attgttgata atattatttc 420 ttcgcatttt cctcatacgc aaggattctc agggcatagg cacaggaata ggtttaaaaa 480 taggaacaaa atatattcca tagaaaaatt cgaataaaag acaactcgta gaaacaaaga 540 gaagtgtaag acttacatat ttttctttga agagtttttc ccgcgtgtct cagtgcgagc 600 gaaacaagca tgggctggcg cgattcgctt attagtatgc aaacggaagt aaaaggtgct 660 ttgatgcatc tacttccgtc cacctctgcc tcggatgaaa cggcagaata gagccagaga 720 atgaaaggtt tgcgagatgc attattgtgg acatgagaac gtgtttattc attttttaac 780 atcactagct taaaaagaca tctttcttct atagctgtac gaattttggg ccgatgaatt 840 cgagctaaag atatttttct ggcgtgtttt ctagggcggg taaaaagagt ttcatccctt 900 gtctcttttt actaggtatg tcgtgacatg gaagccattt cacagacgag acggccgtta 960 gaccgctaac caatgagaga gcgccagaaa gcaccgggcg ccgaaaaagt agacaagaga 1020 tacaaacgca cacacgcact aaatcaacaa caacgcaaag ctaaaaaaaa aacctctaac 1080 tttattcaaa ccgtagaggt gagctccctg tg 1112 // ID piggyBac-2_NV repbase; DNA; NEM; 3322 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-2_NV autonomous DNA transposon - DE consensus. XX KW piggyBac; DNA transposon; Transposable Element; piggyBac-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3322 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3322 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-2_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 641-641 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 1218..2687 FT /product="piggyBac-2_NV_1p" FT /translation="MTRAVDFFQLFFTAHLVQQISANTNAYAYANIEQKQS FT YANEMGAWNDTNPEEINRLIALILYCGLVNVSSFHRYWNTKTLYHGLWARA FT IMARDRFKALMAMLHVVNPIEEDDHDKLRKVRSFLDHFKERCKALYQPFQN FT VAIDEKMVKSKHRSGMRQYIKNKPTKWGLKLWVLADSTNCYTYDFDVYAGR FT QTANAPSTNGLAYDVVMKLLSPLLNQGYHLYCDNFYTSVTLIKDLFLVKTP FT ATGTATENRRGFPEEMKNGRKWAGKQERGSMRWHRDGVCLAQQWKDNRPVT FT ILSSIECANDYVIVSRKVKSREQWTNIEVRQPMAINNYNSYMNGVDRSDQL FT MTKNNALSKCRRWWKVLFFHMIDIAVVNSYILFQLHRAQNPDNTALYRPKK FT YSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRNC FT KVCYATTGKELKVRTYCEAPQCQAYLHLTSTQNCFKIWHSKEFHE" XX SQ Sequence 3322 BP; 1046 A; 609 C; 722 G; 941 T; 4 other; ttaacccttt ggtgccggcc cttgctgaaa tcgttccata tggaacgatg acgtatccgt 60 tgtcatagca atgtttttgt tattatttga aaacaaaaaa gtcttyacaa tggctaatga 120 gatataccca atcagactgc agagtttttt tatacaggra tttgattggc tagccatagt 180 tttgattata atccctgctt catgcttgct ctggtcaaaa tctaaaatgg cgtcttcgag 240 taagcgacca cgtaacgatc aacagcgatt tacagctcaa gaagttgcag aaattcttat 300 gaatgaaaag agcgatgtag agagtaatgt ggacagtgag gtaggaggga tttctagtgg 360 tgaagagttc gagttggacc aagaaatgga agtaggaagt gaagctgaat cgaacacgag 420 gtaagtttat cgtaaacaaa agagacgctt tgaaatactc gctctttact tcgctaaatt 480 gatgttattt acctcgtgtt ttctttcaaa ttattattcc antttactag ctgagtaatt 540 tatattgnat ttattcgatt tggatatatt tgttttgcca tatttttacc tagatgtgtg 600 ccgagtgatt ttcccgggaa tcgcacttca cacctatcaa gatcatacga aaacaaacat 660 atagccgaag aaattcttgc ataagaaatg cctgaaaaac atttttatcg gtaccctagg 720 tgctaaaacg cttctcttta tccatatttt atagtgttga atgactaaaa ctgatttcga 780 ttcgccttta tgtttttatt ttgacattta tagtttcgat gcgcttttat gttttcattc 840 cgacatgtgt aatttcacaa taatttttac aacacaccaa taagatcatc acaaaaataa 900 ctaatatttt ctctgctgtg tattttagtt ttggtgatga ggaggctcat cctgaagggt 960 caccgagtag tgatgagagt gtgggagaag aagcgacatc ttcggcgtcg agacctgttc 1020 gagcgagagg acgaggcgga gggcgaagaa gaggacgggg aagaggccag cagcgtaggc 1080 agttggctac tgcccagcca cagcaagcaa cctcctacaa cagctatgga gatgctgacc 1140 aagtgaacca gctccccgat tttgctccga gtagaattcc tgggctacat ttagaagtac 1200 cactactgag aggagccatg acacgtgcgg tggacttctt tcagctgttt tttactgccc 1260 acctagttca gcaaatcagt gcaaacacca atgcctatgc ctatgccaac atcgagcaga 1320 agcagtcgta tgccaatgaa atgggggcat ggaacgatac aaaccctgag gaaatcaatc 1380 gacttattgc cctgattctg tactgtggtc ttgtgaatgt aagctcattc cacagatact 1440 ggaacacaaa aacattatat catgggctat gggcaagggc aatcatggca cgtgaccgtt 1500 tcaaggcctt gatggccatg ttacatgttg taaatccaat tgaagaggat gatcatgaca 1560 agctgaggaa agtacgcagt ttccttgacc atttcaagga gaggtgcaag gcattatacc 1620 agcctttcca gaatgttgca atagatgaaa aaatggtaaa gagtaagcat cgttcaggta 1680 tgaggcagta tataaagaac aaaccaacga aatggggact taagttgtgg gttctggcag 1740 acagtacaaa ctgttacact tatgactttg atgtctatgc cggaagacag acagcgaatg 1800 ccccaagtac taatgggctt gcatatgatg ttgtcatgaa gttattatca cccctactca 1860 atcaaggata ccatctgtat tgtgataact tttacacatc agtgacactt ataaaggatc 1920 ttttccttgt gaagacacca gctactggca ctgcgactga aaatagaagg gggtttccag 1980 aggagatgaa gaatggcaga aagtgggcgg ggaagcaaga gcgaggaagt atgagatggc 2040 acagagatgg tgtttgcttg gcacagcagt ggaaggataa cagaccagtc actatcttat 2100 cctccattga atgtgccaat gattatgtaa ttgtttcaag aaaagtgaaa tccagagaac 2160 agtggacgaa catcgaagtg aggcagccga tggccatcaa caactacaac agctatatga 2220 atggtgtgga cagatctgac cagctgatga caaagaacaa cgctctctca aagtgcagaa 2280 gatggtggaa agtcctcttc ttccacatga ttgatatagc tgttgtaaat agctatattc 2340 ttttccagct tcaccgtgcc cagaaccctg acaacacagc actttatcgc ccgaagaagt 2400 attcagttgc tgagtttaga gaagaactag tgagacagct ggtaggctta gaagagtttg 2460 gtcccccacc tgcccacaag ccaccaacta gggcacctaa ccagtttgag actgtccaca 2520 tgccaatgat gtcggatgtg aagagaaact gtaaggtttg ttatgcaacc acgggaaagg 2580 aactaaaggt caggacctac tgcgaagcac cacaatgcca ggcatacctg cacctcacca 2640 gcacccagaa ctgttttaaa atatggcaca gcaaggagtt ccatgagtaa gagtgtttag 2700 ttatctatag tttgcaagga caatgctgtg tacagttagt atttcattac ttttttttgt 2760 ttttcataat ttatttagtg aatactagca attgtaagca agaaatgcta ggcagaataa 2820 cacaaagctg attataagtg tataaaagac actattgaac catgatatag tgttcttatt 2880 ttaaatattg ttgataattt cagaaaaaaa taaattttta ttacccgtcc cctaaatagc 2940 ataatttaca tatggtaagc ttttctgctg taactttctc ttctttttgt gcattaggct 3000 agaatttata gcaagtgtgt attatatgat agggaacaat tttgttttca acattttttg 3060 attgacttga tttcaagtgt ataatgtgat attttcttgt aaatagtata ttacgtaaca 3120 ccttaattag cataaattaa tacaaaaaat aattagtaaa tggtgaaaaa attaaaaatg 3180 agggaaccaa tgtgtagccc attttgtaag ctttccatag acatatagca caagcaaatc 3240 ggataaaagc agaagtggca ggatatttta caatgagaga cacaaaaaat ggcccatttt 3300 agggcaggca ccaaagggtt aa 3322 // ID DIRS-7_NV repbase; DNA; NEM; 4635 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-7_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4635 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4635 RA Kapitonov V.V. and Jurka J.; RT "DIRS-7_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 446-446 (2007). XX DR [2] (Consensus) XX SQ Sequence 4635 BP; 1315 A; 910 C; 1007 G; 1403 T; 0 other; attctctttc gatatgctcc acattatggg ataattatgc atacttccta acttactatg 60 gtcagcggtc acatttcaaa gccattcaaa tgcaaatgag acagcggtat ataaccccag 120 ggacatagaa tacaatcagt tcttcctttc gtgctactac aggtcagtga gtcaatttgt 180 atattttgtt ttgcatcgga ccgcgtgctc tctttatctt tctacttctt ttcagaagga 240 aaatggcaag caaagacgat aagcagaacc atattgaacc tgaaataacc gttatttctc 300 gtgaaccagc gagggaaaca cagtctacga aggataaaga cgaagaagca ttggagtttg 360 atgttgacga actgaaagac cagcttggta tatctcatat gctcgagaca atgaaattct 420 tggtcgagca agttactgca aaacaggcag ctacctcgaa ttataacgcc agtgaggcta 480 atattgcagg gaaaacgtcc gactcggacg gttccggttt tgacccgtcg gctagccttt 540 taccggcggt cggagattat actcctgaca aggagagtag tgctaattcg tcgctggact 600 ccagcgcagc agcacagttc ctaccctctt tctttgagga aaaggagggc tatggtccta 660 aggttataga cgttattgcc gagcgtgtca acgacgcatg ttctaaaaaa cctctggagg 720 agaagctcaa ggagctgcag aataaatata agactccaga aaactgcaaa tttctctgcg 780 ttcctaaagt aaacgtggaa ttgtggcatg atctagagcg aaacaccaag tccagagatt 840 taggactgca agaacttcaa aagaatgtgg taaaagcggc gcagcccatt gtcatgctgt 900 ttgactctat cgcaggtaga gcagttgatc ctaaggatat cttgccgatg ctggctgatt 960 ctattaccct attggggcat gcgccttact tgtgctctct aaagagacga gagctactga 1020 aacctgacat agctcaggcc taccaggcag tgtgcagcaa atccaatcct gtgaccacct 1080 ttctttttgg ggatgaactc cctaaacatg tcaaggacat aggtgaagtt aataaaattg 1140 ctagaaggac actagctcgg gtgagttcat cgagacgtgg gcgctctttt gattacaaat 1200 tctcaaacaa caacaacaac actggtcaat ccatgcgtgg caagcggagt gcttttttag 1260 gattacgaag gttccgagac cgaaggacaa agggaagcaa ctgccagtac acacagaaga 1320 attaccagaa ctccaaggac aaagcttgaa tgaggtacct atggctcatg caggtaatct 1380 gcagcaccac attgaaaact ggcgtaaaat caccagtgat ccctgggtac tagaaactgt 1440 atcgggatat catttggaat tcagtgagtc tcctttgcaa aatgaattac ctaagccgcc 1500 tccatttggc gaagatgagg aaaagcttat tgatgaggag atcactaagt taaaaagcaa 1560 aggagccatc atcaaggttt ctccctgcac tggggaattc atttcaaata tctttctagt 1620 accaaagaaa actggtgata tgcgcccagt gattaattta aagcccttga atagttttgt 1680 acaaaagatc cattttaaaa tggaaaatat taatgtggcc ttagatgcca tcgcaaaggg 1740 tgattttatg gtgtcagttg atttaaaaga tgcttatttc agcattccta tttacaagcc 1800 tgatcgtaaa tatttgaggt ttaagtggag aaatgaaatt tatgaatttt catgtttacc 1860 ctttggctac agcctagccc ccagagtttt caccaaggtc ctcaaacctg ttgtctctca 1920 tttgagacta aatggatgtc gagttgtgat atttctcgac gacatccttt tgattggtag 1980 ctctctgcag gaatgtttct cacatttatc catgctcaga ttattattac atgatttggg 2040 ttttataata aatgaagaaa aatctcagct cactccagtc agtcaaatca cctatctggg 2100 ttttgatatt gactctgagt taatgaagct ctcattgcct attaagaagg ttgagaaaat 2160 agttcatgca tgcaaaaagg ttttgttaaa aacgtttgcc tccgtcaggg aagttgcttg 2220 catagtgggg ttgttggtat cagccttccc tgctgtgaag tatattaagc ttcactacag 2280 atctattgaa agagacaaaa ctcaggcctt agcttccaat catcactttg atcaaaatat 2340 ccagattggc tcccaggcaa tgtctgatat caactgggta gcaaataaca tttctaagtt 2400 gaatggctct atgtttgggt ataacccagt tgatgtttat atagaatgtg atgctagttt 2460 gtttggctgg ggtgcagttt gtaatgggca gtctacgaat ggtagatggt ctttgcctga 2520 gtctagtcat catataaact atttagagtt attggctgct ttctatgctt tgcaagcttt 2580 tgttgaaaat cgaaatggta ttcatgtgag actcagactt gaaaactcca cagcagttgc 2640 tttcatcaat aatatgggtg gaatgaaatc tccttctttg gctgcacttc ctgctattat 2700 tagggggtgg tgtatttcaa ggaatatttt tgttttatcc cagcatatct ctggtagatg 2760 taattgtgaa gctgatgctt tatctagaga attcacttct aatttagagt ggtctcttga 2820 tcaggacgta tttagaaatc ttgtttcaaa gacattcatg cctgaattag atctctttgc 2880 atctaggtca aatgcaaaat aggaccgatt tgttgcatgg cacccggaac cgggtgcaca 2940 tgccgttgat gcttttagta tcagttggtc taatttccga tgttatgctt ttcccccctt 3000 tagtctcttg actcgggtcc tggccaagat tcggaacgac agtgcattag tactccttgt 3060 tgctccaaca tggacgacac aaccatggta tcctctattg ttacaactct ccatagctca 3120 gccaatactg cttccacgga tggaccatct gctgacactt cctcacagtc aggagctgca 3180 tcccctgaaa gacaggctgc acctggcagg atggatgtta tccggagatc attgtctgca 3240 aagggatttt ctgatgaggc aatccgaatc atctctgcat cttggtcaac tgggactgac 3300 aagcagtaca atacagtttg gaagaaatgg tgttgctggt gtgatcagag gaaagttgat 3360 ctacttcaag cacctgtgag tgaggtagtc aatttcttag cagactgttt tgctggaggg 3420 aagagctaca gcacaattaa tacctatcgt tcagccttgt ctactacctt gtatagcgtg 3480 aacaatgttg ctgtcggttc acaccctctt gttacaagac tactgaagcg tgtttatagg 3540 ctgaagactc cttctccacg atattcgtct acctgggatg tctctaaagt gactagttat 3600 ttgaggactt tgttcccttt ggagcaactt tctttaaaga ctcttacttt taagactgtt 3660 atgctctgtg cattgtcatc agcacaaaga gagcaaacct tatgtgcttt agatttgagg 3720 tatatgaatt tgagcaatgg atgtatagtt tttgacataa cagagtgcct gaaaaccagt 3780 aggcctagaa agccttcttt aaaggttgag ttttcttgtt tgaatgaaga taaatcaata 3840 tgtcctgttg ttaccctcaa agagtacata aatcgcacaa gttccctgag aacttctagt 3900 ggggaatcag tatcaaagtt gttcatctcg tttattaaac cacataaggc agtgtccact 3960 ggctcagcag caaggtggat taatactgta atggctgcag ctggcattga tactgatacg 4020 tataaagcac acattgttag aggtgctgct gtttcagata agtatttaaa gggtgttcct 4080 gttgatgaga ttctccgcat ggcggactgg tccaatgagc ggacctttag aaagtattat 4140 ttgagagaaa ataatgttgc aaaataattc taagtgttga attatattaa atcatctcac 4200 cagttaagtt tgttgagata tgtgttatgt cttatggctc aggtactttg aaatcgcata 4260 attatcccat aatgtggagc atatcgaaag agaatttaaa aattagacga gaggtactta 4320 ccttgaagtg taattgtaat tctctgaaga tatgcagagc attatgggat aatgctaccc 4380 gcccttgagt cctttatccc cgccctttgg tttcggacct tcgccatttt atacactcca 4440 ggaagaactg attgtattct atgtccctgg ggttatatac cgctgtctca tttgcatttg 4500 aatggctttg aaatgtgacc gctgaccatt agtaagttag gaagtatgca taattatccc 4560 ataatgtggg gcatatcttc agagaattac aattacactt caaggtaagt acctctcgtc 4620 taatttttaa atttt 4635 // ID DNA-TA-10_NV repbase; DNA; NEM; 260 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-10_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-260 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-260 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-260 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 260 BP; 74 A; 64 C; 54 G; 68 T; 0 other; ctgcagtttt caatattctg cgaactctcg ccgacgattt ccaacagcta aatcgccttc 60 tggcttccgt cattcaaaat ccttgaagcg ttttcattgg ccagcactga aatggtttcc 120 aatcacgcca cctctccgca aggcgctgac caatcaaaaa gcaccaaatg taattccgtt 180 agtttgaatg acggaagcca gaaagcggtt tagcagttgg aaattgttga cgagagttcg 240 cagaatattg aaaatcgcag 260 // ID Polinton-3_NV repbase; DNA; NEM; 16575 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Polinton-3_NV autonomous DNA transposon - DE consensus. XX KW Polinton; DNA transposon; Transposable Element; Polinton-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-16575 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-16575 RA Kapitonov V.V. and Jurka J.; RT "Polinton-3_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 649-649 (2007). XX DR [2] (Consensus) XX SQ Sequence 16575 BP; 4777 A; 3789 C; 3831 G; 4177 T; 1 other; agtagtaggg ttttggcgca gctggcgcaa ctttttgatc tccccaaatt tcattccaaa 60 artggcgcaa aagtctccgc acacctccgc caagcctcgc gacctgcgca tgcgcgagtt 120 tgccagagat ctcttgcacg accaagccca cctgtcaatc actttgtcac gtgatagcca 180 agcccacctg tcaatcactt tgtcacgtga cagccacgcc cacctgtcaa tcactttgtc 240 acgtgatggc cacgcccacc tgtcaatcac tttgtaaaaa acctgtcaat cactttgtca 300 cgtgatagcc acgcccacct gtcaatcact ttgtaaaaaa cctgtcaatc actttgtcaa 360 gaacctgtca atcactttgt caagaacctg tcaatcactt tgtcaagaac ctgtcaatca 420 ctttgtcaag aacctgtcaa tcactttgtc acgtgatagc cacgcccacc tgtcaatcac 480 tttgtcacgt gtcgcaccta gggggagctc gagggggcta gcctctcagc ttcacatcta 540 aaaaaagctt ttgaaaagtg gtttaaagac atggctggtt tgatagaaat ggagaacctg 600 aaggtgaaag atctgaaagc cctcgccaag gagcggggta tcccaagata ttactggatg 660 cggagagacg agctcgtcgg ggcgctgacc agcacgtcac caccaccacc accccgacgg 720 gttcctttac ccaaacttgt caaagggctg ccacgaccac cccgcattac cccgtccaac 780 acgtcggaga gtattctcga cggcccgata cctgagatta atgtccctat tctaaaaccc 840 tcccaacccc cacggagttc ccgcgtccaa tcactcaagc attttgcaaa cagggcggcc 900 aacttgatca agagcgagtt agacaagttt gcggattgga tactatctta tgtccctgag 960 cccatcaaaa agaccgtcaa agaggctgca gataaacggg tcgaacgtct gaaggagagg 1020 attaagcgtc tacacgagga ggtggaagat cgcttcacac ccaaggaaca acagacggcg 1080 ttgaaggggt atcttaaaac ccacggaata gccgggcaga gaggttacga ccccaagaca 1140 ttcatcgcca gaatcaaacc gaaagtctta gagctcatca gtcgacaaaa aaagcctatc 1200 aaagtgaagt ttatctttac ttgcgggttt ataaaagagg atccggctac agctcagatc 1260 gaagaagaac tgggatattt tcatacagaa aagcccgaga ttgtgacaga gtcgactgat 1320 ctctctgatt tgttcgatac gatgacaaat tatttactcg gattagttga gctgttccag 1380 aagcaaggct ccggatggca gtttgaccaa gtggaatact ttgacatcaa catagatccc 1440 tttgaaccgc tttctgggtc ttcctatatt ccgctgccgc cgaaactagc gtctaagaag 1500 gcgatcatca atgttaagaa cgagaatgat cacgaatgtt tcaagtgggc agtaacctct 1560 gctgtgtatc ctagggagaa agatcctcaa aggttcagta aacaaatgat agagaactct 1620 gagaaattcg actggtcagg gatagagttc cccgtctcac taaaacagat tgacaagttc 1680 gagaaacaga accagtatac ggttaatgtg tttggatacg aaaccaaaat atatccattg 1740 agaatcagtg agaaggatcc agataatgca atcaacttac ttctcatctc ggatgatgag 1800 acgaatcatt actgctggat aaagaatatg atgagattag tatctactca aattgatgag 1860 tttcatcata ctcgtttttt atgctgtaga tgtctgaact cgtttcggtg caaacaatca 1920 ttagaaaaac attctgaatg ctgcggcaat catgaagcgg ttggaataga gatgcctaag 1980 atagataagg atggaaatct accccacatt aaattcaaaa actacaacag aaaaatgcgt 2040 gtcccctttg ttgtctatgc cgactttgag agcttcacag agaatataga cacatgctcc 2100 ccagatgaga gtaaaagctt cactaagcaa taccagaagc acaaaccgtc tggtttctgc 2160 tatctcatca agtgtttcga cggagatata tccccatccg agcttgtacg atacacagct 2220 gaatctccag acgaagatat cccacagctt ttcgtagagt ctttggagtc agacattaag 2280 aaaatttacg ataagttcag gttccctaag aaggtgaaaa tgactccgaa ggacaaaatc 2340 gcctataacg acgccactca ctgccacatc tgtgagggtg aattagggga agacaaggtt 2400 ttggaccatt gccaccttac agggaagtac agaggtgctg ctcacaacgc atgcaactta 2460 gatcacaaaa ttccaaagtt ctttcctgtt atctttcaca atctgtctgg gtacgacagc 2520 catctattta tcaagaacct tggtacatcg gaaggtaaaa taaactgtat acctaataac 2580 gaggaaaagt atatttcttt cacaaaacag attgtagtcg acagtttcac gaacaaggag 2640 ggcaacaaga ttgatgttaa acgtgatatc agatttatcg acagtttcag gtttatgtcg 2700 gccagtctcg acagtctagt gggtaatatg tcaagggagt gcttcaaaaa cctggcggag 2760 tactatgagg gggaggagct ccagctgttg ttgaggaagg gtgttttccc ttacgactgg 2820 ttcgacggct ttagcaagct cgacgcaaca cagctcccac agagagaggc attccactcc 2880 aaactcaacg acaccgacat atcggaggag gatcacctgc acgcgcggag agtgtgggag 2940 gtctttggga tggggaccat gagggattac cacaatctgt acctagagtc ggatgtgttg 3000 cttttagctg acgttttcga gaactttagg gacgtttgtc tcaagaatta cggtctggac 3060 cccgcttggt actacacagc gccagggttg gcttgggatg cagcgttgaa gaccaccaag 3120 gtgaggctag agcttctaac ggactatgac atgttgctca tgattgagaa gggcatccgt 3180 gggggtgtct ccatgataag caacagacat ggggaggcaa ataaccctta catgaaggag 3240 tatgacccta acctacccac aaaatatatc acctaccttg atgctaacaa tttgtatggc 3300 tgggcgatga gcaacccttt accgactcac ggtttcaggt ggatgggtga ccaagagctg 3360 tcaggttgga gagaccgccc atgcattctg gaggttgact tggagtaccc tcaccaccta 3420 catgacttac acaacgatta cccactagcc ccggaatcta tcgggctagg caatgtggac 3480 aagttggtcc ccaaccttaa cgacaagaca aagtacgtta tccaccatga gactctgaga 3540 ctttatgtga gttttgggct aaaagtcacc aagattcaca ggggtgtcac ttttgaggag 3600 tctgcttggc tggagcccta cattgacttg aacaccgatc tgagagccaa ggcgacaaac 3660 gattttgaga aagatttttt caagttaatg aacaactccg tctttggtaa gactatggag 3720 aacattagga acagggtgga cattcggttg gtgacggacg agaagcaggc caagaagctc 3780 atatcaaagc cgaactatca acatcgcacc atcttttgcg agaatctagc cgccatccac 3840 atgaagaaga caaagctgat cttcaacaag cctgtctact tgggcatgtc cattctggac 3900 ctgagtaaga cgctcatgta cgatttccac tacaacttcg tcaagcccaa gtacggtgag 3960 gatgcaaagc tcttattcac tgatactgac agcctgatgt atgagatcga gacgaaagac 4020 ttttacgagg acatcagcgg ggatgtgagg tccatgttcg acaccagcaa ctttccgaag 4080 ggtcacccat ctggtattga ggtgggtgtg aacaagaaag tcatcggaat gtttaaagat 4140 gaggctgggg gccagcaaat cacagaattt gtaggactga gggccaaact ttactcgtac 4200 aagatggatg aaggtaaaga agaaaagaaa tgcaagggcg tcaagagagc agtcgtcaag 4260 aagagcatcg gtttcgatga ctacaaggat tgcttatttg gtaagaaacc tcagatgaga 4320 cttatgaatg tcatcagaag tcataagcat gatgtttaca ctgaaacggt gaacaaggtc 4380 gctctatctc atgaggatga taaacgggtc atctgtgatg atggtattca caccttcgct 4440 cacggtcatt tcagaacgct attaggtggt ggctcagtat cttcagggac gacttgaagt 4500 tcttccctaa cgaacgacct ccttggagcg ccttcggaga ggtagtacaa cacaggctgt 4560 ccaactgaaa caacactgcg tgatagatca aacactttta aactccaaat agggtctgtg 4620 gctcgtctgc gttcacctcc ttcctcttct ccaggagcta acagatatct aactctaacc 4680 cctggtggta gtctaacttc gtcaagtcca acaggccgct tatacgttgg agggtcaata 4740 tcaacctctt tcaaaccaat agattttgca ggctctttgc cagtaattct tatgggttga 4800 ctattcagag ttttcaaaac acctggcaat cgtttcaccc aaactctgga ccgatcatcg 4860 ctaatcattt cttgagcata ctgatgagaa aacaacctct ccgccagtgt tctattggcg 4920 cgttcgacaa aagcctgtgc gcgatggttc ccagcctcgc ttcgctggat ggtgaccccc 4980 ttctttttca taatcttcgt tacctctccc ctaaattctg tccccggatc gacaatcacc 5040 gtatgaggcc atttaagttt tctggagtat atcttttcaa accctttagc aattccactc 5100 gaatccttgg tagtcagtgc ttctgcatct ttatatctcg aggcaatatc aatcacgacc 5160 aacgcgtaac ggtaggtttt tctgcctacg ttatcgtggg gcataaacaa cagatcggct 5220 tggtgaatct gattaggttt attcacagtc caatgcggtc tggggacata ctttggagct 5280 gggagataga tctgccacaa cgcctgtttt tcaagccacc tcttagcctc ggcttcactg 5340 actttagcga cactagctaa cttagaaata gctgaatacc ctttccagta tccatcggtg 5400 gaatagtata tttttgataa cctgctttcg ttactcattt aaagattatc tctcttttct 5460 taaaataaaa gatggcacaa gcgatatcag aaaaaattaa cccaaacagg atcccacggg 5520 aacccttcgg cctgaaagcg gaatcgtcgc tgaatcggat tacattcaat ccctcatcgg 5580 caagtcctgg agaaaccctc tatataaata ttccaaaact tgctgaaaat gtagtgattg 5640 ttccaggtag tgtatcctta ctatttgact taaacgtcac aggacacgcg aataatactc 5700 tcgtcaacaa cgttggtcga aacctagtgt caaggctcaa gattcttttc ggtggagaaa 5760 cactacagga tactcaaaga tacgatctct tccaaaccta tcacgactta tacttacaag 5820 ctgaagatcg tgaggataga ataaaacaag gtatctcctc tgaaaacatg aggaagctca 5880 ggacaaatgc aggtgacaaa gcgacatcag atgctaagga agtagctctt gcagcagttc 5940 acaacaccaa gtactgcatt ccactcgacc atcctattct cggcgagcat ggggtctttt 6000 atccaaaggc gttacctcat ccgctaatct ttgaaattac tctagcccca gtttccgacg 6060 tcgttgttta tgctgacacg gtcaagactc caacgtacac aatcacaaac ctcgagttgg 6120 aatatgcttg catctcaagt gaatacttgg ctcgtgaggc gttgtcggct tatcaggttg 6180 gtagaggatt cttttacgag aacgtcattc tccacaaaac gttcaccatt tccaaaccta 6240 atgatggtgt cataaacgag cacattaatc tgccgaggag gtcaatgaca gggatattgt 6300 gcctgttcac agagagctac accggaggag caagggattc cgaaaagttt gtcaatccaa 6360 gtatcacatc gatcaacatt aatgtggatg gcatgccaaa ccgtctctac tccaagggga 6420 tgacaccgcc ggacctctgg gagtcggtaa agaaacgttt cggtagagag ggtgttaagc 6480 aaaaggattt ttacgctaat aacaagtttg ctctgtgggt cgacttgagg gcacatccag 6540 ataacagcat tcacggagga ggtctggtct tgaacaacac gcgggacgga gtaaaactag 6600 aaatgaaacg aaaagttgga ggaacgggaa acatcacctg ctacatgttt gtagtagccg 6660 acgcgttgat ggaggttatg aactcgaatt tgagagcaat catgtattaa aaaggacttg 6720 tgtgataata caaaaagaat ggaagaatta cgggaaaaag ttccttttca ttgtattatc 6780 acaggaccta ctaattgtgg gaagacaaag tacctcacgg aacagctccg ggggccgttc 6840 cggcatgtgt ttgaatacat tgtgttgatt tgtccgactt atgcgaaaaa taagtcctat 6900 cgtagatttg ctcacggaga taaacgtttc ttggtattat caccggatgc tagtaacacc 6960 gatgagatta acgagttact aacagattgt gcggtgctat tttctggtac aaatacgtta 7020 ctcgttttgg atgactgtgc tgtatcgaaa gatctaaagc aacgctcgaa caagtttatc 7080 gatctagcgt tctcagggag acacgatggg ttatcagtgt gggtattgac gcaacaatta 7140 acatccatag caaagccctt ccgtgataac gtcgcctgtg tggttacatt ccataatcca 7200 tctcaaatcg gtaccaaaac actgtttgaa gattatgggg gtgacttaga cgtcgagact 7260 cgtaaaaagt tcgtagaact gctgaaaact gaaaagtatt ccagactctg tttctgtcta 7320 cggcatccat tccaaaatta tttagagatt cctgcgacgc ggtgagctcg aggggctagc 7380 ccctcgaagt ggtttaaaaa catcttggtc tacttacaaa ataagatggc aagcattgag 7440 gattatatgg aagaggagcc tgagtctaag gggagttcga agggtgagcc tctcgaagat 7500 gatgttgaag tcaaacgaga atcgctggct attctcgcat ctcttgggac tacgaaggaa 7560 tttcttggtg tcggtatgag tctaggtgat atcaagaagc tctcggcgaa agacgtcgag 7620 aaatactttg ttcgctacca gactgtctta ggcaagcaag ttactgatgg attagtagaa 7680 tcagcacttc aagtggtgtc tcaagtcatt tcctacgtgg ttcctgtaga tgacaccgaa 7740 gcgcttagca aagacttaca gaacgacgag ttggttaaac gcgaattgtc aaactttgca 7800 ggtctcttgg tattgaaggg aggaaggatg gtagcacttg ctagtgccct ctttcgggtc 7860 gctaagcatg ttaaactaac accttcttca caggagactt ccaacaaact tcaagaagtt 7920 tcaagcacaa ctgagcaaac tcttgagcac acctgagcac aactaagcaa actcttgagc 7980 acaactgaac acaactgagc aagctcttga gcacaactga gcaagctctt gagcacacct 8040 gaacacaact gagcaaactc ttgagcacaa ctactaagac gccatttaaa gattatgttt 8100 cttattgtaa atcgaaataa gaaatgtctg acgaaaatca agaggttgaa cagattacta 8160 ggaacccaca accgacaaaa agcaaggaga aagatcctaa aaaagtcgct gctggtaaga 8220 gagttgccga atataatagg agggctagag aagcacttgc tagggagatg aaacgtgagg 8280 cggaggcgag ttcagaagac gctacacgag cagagacacc ccaccaagag ggagctcgag 8340 gggatagcct ctcggacgct tggattccag agctatcgtt tacaactgta ctggctctag 8400 ttggaatagg gctcaccgca ttggatatgt atatgcgttt ttacaaaaag aaagagggcg 8460 aaccgcctaa gatcaacgcc aacgagactg aaactttcga gaggcctgcc ccccacctag 8520 ggggagctcg aggggctagc ctcccgaacg cgacgccaaa aataggaatg ttgtgattta 8580 aagattatct gaatctgtaa taaataaaat catgtcaact gaaaacaaac ttgtgaaaac 8640 gatcaccgac tcagcagtca tcatcggatt agccgccggc gtgggttatg ttgctaaaaa 8700 ggctatgaaa gaatcgttta tcagcgaccc ttcgtcaagt gttacaaact acgctaaatg 8760 ggttgctgtc ctgtccggta gtatgtatct gaaagattat ctggaaacac aaaagatttt 8820 gccaaaaccg ctgtaggcga cttaaagatc ttatagattg attaataaat ggcgagtata 8880 gcatttatga ttggtggagc tattcttaat gcgacggcat tcgttggagg gagttaccta 8940 gcgagatact tatcttctga cgctactcat gttgataaag aaaaaataag acacgataaa 9000 gcgcttgaaa agtatcaaca agcaatgggt gattggcaga aaaaacgaca ggaataccag 9060 gattggttgg gggaagaata taataataaa cttcgtgcag accagaatga taaggagacc 9120 gatcaggctt tcaaactata cgctcaaaca catccagatt ttgatttgaa agagcctgag 9180 ctctcagatt actacagacc aagtagcaac caaaagatgg gagagatggc atatgttgga 9240 ggtggaatgt tagctcttgg ctatgtagcg agtaggtgga tatgagccgg cacgacttaa 9300 agatttctta ttttcaaaca aaataagaaa tggatataga ttttgatccc acaacagaag 9360 aaggtagaga agatttgaat actactgtag acgaagatta tgactctctt attccaaacg 9420 atggtgaggg aagagaatca tggaatgaaa ggatttcaaa cagatttggt agaggtgcaa 9480 gctatgtgag taggaggttg accgacttat ggaaaacacg aaaccccggg agggttgtcc 9540 ccgaatacat ggaattacag aatatgggag gttcttcttc aacggacaca cttagggtaa 9600 accttttgtt atcgaaatat ccagatcttg atgaaaattt agttcagatt tcaacggatg 9660 aaagaggaaa acaattcatt tccttctatt ctgcgagaaa aggtggttgg actagaccag 9720 aaaggttgta taatgaggat agaacggtgc ggaagagtgt tgacgccaaa atcagatccg 9780 gaaagtacaa gcaaattcag attcaactcg atgaactaga cgctacaggt aatacactca 9840 gagaagaaga agagagaaac accgagcaaa tgagaaaaaa taatgaggaa cgaagtgaaa 9900 caactaacca agaaagacta agagctatag atcgtaaaaa tgaagagctc agcgaaagaa 9960 attctgtcat agatgagact ttggaagaga atcaattgga gagagaaaat cttgaagaga 10020 gaatgtcgtt gaaagatcgt gtcaaagcga tttttaagaa atacggattt acagtcgctg 10080 ctgtcgttac cgctgtgggc gttgttatcg gtgttattgt ctctaatctg aaagctgggc 10140 tgactagtgt tgcaaaaggt gttggaaatg gtctgaaaac aataggcaaa aaattaggag 10200 aaatactccc aggaatggtt ggtgcgatag ctagtttcat atttagaacg gcgggtgaag 10260 ttgttggctt tttagctaaa aacgcatggc ttctcatcgt cgctgtcgtc ctgtatttcg 10320 tagaacgatt taaaaggaga cggaaatcat aacaaatggt attactctac attgaaggga 10380 acgttggtga ctttaccgtc tatttagaac accctattga aaagccgcgg tttatcgcgc 10440 tgcgaggatg tgcgtttcat aatcgttgta acagtctctc aagcgaggga acggtctccg 10500 acggtgagaa cattatcctt aggatccccg cggggcagta tacgatcgag acgctaaaac 10560 gtcaaataga tgggggtatg cgtcttggtg aaaagtcagt ctctattaga gactcgtcac 10620 tcgaagttca tcggaacgtc gtgttgaatg agccgctcgc ctgcctgtta ggactcaaga 10680 ccagggagct ggaagcaaac actcgccacg agataaagat gataggtcac gaggctattt 10740 ttatccactg cgatcttgtg aacgcgtctg actccctcca acaaggggcg ccctcacaag 10800 tcctagcaag tgtagagctt gatgaaggaa agatatacct caatccaagc gatccggtac 10860 gggttagtac cacatcagtc ggttacgtga gtagtctccg tcttagtata aagggcggtg 10920 acggaaacac aatagagcgc ggtctctacc cgatacgtct aattttagaa atcacttaaa 10980 gaataaactc tccccataat aaagctatgg aagagtacaa ctcaatctac ccgaacgtac 11040 cccgaggggt cagcccctcg ggtgataact tcagacttca aaagacccac gatgttttgg 11100 gaagtttgga gcaagaagtt aaacattacg agaacgtgag gaaaaagtat aaacgagcgc 11160 agagcgtgtt ttcaaaggta agtgtggtct taggactcgt atccgtcatt cttgggtcta 11220 gtggtttagg aacttctctg tcgggttttg gtatcgtcgt cggagttccg ttgggtgctt 11280 tggctggtgt tttcggtctt acgtctgtag gctgtgcggc ggtttctaaa cgactgtcgc 11340 aaaaagtctc caagcacgac caaacagcgg cgatggcaaa ggcaaaagta aatagcatac 11400 gcgacctggt ctctaaagct ttaaaagaca acaaaatatc agacgaagag ttctctttaa 11460 tcttgaacga ggtggacaag tttgaggctc taaagctcca gatccgtcaa aagtcggtaa 11520 gagaggacga aaaaaacgta aacattacca agctgaggga aacagtaaga gaagagattt 11580 tgaaagacct ggcgagtcga cccgctcggt gaaatttctg tacgagagaa ctcccgtcgg 11640 atggatctat gaattgagat gcgtaaagga ctgatttaaa aacatcttat atgtcatata 11700 agatgaagtt tacagaattt gtgaaaaggt acccctacta ctcacgcttc aggttctctg 11760 ccgacgagca cggcaatgtg caattcgttt tcaatgggga cgaatacgat ccattcgaca 11820 agaatgggaa tctagtcaaa acgttatatc acttccctgg taatagctgg aaacccgaga 11880 atatccagga ttttctagtc gccgacgaca cacaagcata caaggaaacg atccagcaac 11940 tgtttgggtt cccaaaacaa tacagactag acgcgcgtgc agagtacaag atattgccgt 12000 gggacgaaaa ccctacgaga aataattacg tctctttcga tgtttttata acaccaaagc 12060 tgaagacaca ctttgttttt agggacatat tcaccgacag cttgctagta ttcagaacag 12120 caaaggaggc tagtaggtgg ctcgacgccc cgaacctcag ttattggagt caagccttaa 12180 attttgctat gttttgcgcg actgctggat gtggtgtgac gcgtgacatg attgacgact 12240 ctcaagtggg gtcattctac agatttcaca tcattttcac tatcagacga atattaaacg 12300 agctacaatg ccctcttcca aaagataggc tctttagttg gaataaaaac ttttacagcg 12360 aagcggctta ccaaaaacta agaacagaat tccgaactgg tgacgatttc cggttcctcg 12420 gaccgataaa tcatgggtta gggaacgttt ataattatga ttatcacggc ttgtcatctt 12480 ctaacgacaa gtataagcct tatggcacca ttgatcaatt acacgacgaa tgggacgctg 12540 ccaaaagcga ccacgaacac atgaatcact ttgagatcga gtacctgaaa gaccttagaa 12600 ctgggtttca gtatgagtgg ttctttccgg aaaaatcaat ggggttaacc aaagctgggt 12660 tgtctaggat aaaccagagc atcgaagcct ttgtttactg tattctaggc gcgcaagttc 12720 agacccggtc gtcaatcgtc ggtgatagcg gttcagctca ggaaacgaaa caggtcttca 12780 cgaaactctt tgaaagcgcg gtggtggaaa acagtatatc gaaaagtata caacggtatc 12840 agtttgcttt acaacaggcg agacaaaaac tagacctggc tttcgccctc ggctgttggt 12900 taagtccatc gtatcttgtg ataaataaca acacttcgat cgctggctat aataacaagt 12960 tacaaaaagc caccactgat atgaaactgg ggctgaatcc gataaataac gagataaaaa 13020 cgatcccaaa acataatatg ggtcattcaa agattgtgtt acctcatacc gagtcagtca 13080 cggctcacaa accggaaccg gaggcgaaaa ctaacccaaa gccggacgtg attaaaccca 13140 cgaacacaca gcacgaaact aaccttgcca cgatcacagc ctttacggct ggtttagctt 13200 ggtatctatt ccggtaacat gcggggtgca tgtggacgga tgtgacgtac cgcaagaaga 13260 caatacctgt tcacgtgtgc ataccagacc accctggcga ccgcgaactc tcaatgtaaa 13320 tacaaaacct attttcagaa tcgctagttg ttagggtgat taggaatgta tgtgttttgt 13380 aacgtgagac gcgttacaaa actgagtggg tcaatgttaa tttccgttac acgttctgca 13440 atggtgcttt tgtctatcgt gttcgcatat ttgagaccct ccgcataact tacaaaaggg 13500 tctctgtttg ccgtgttcac acatcccttt ccccttgcag tctttacaga catatcttgc 13560 tcgtctgtgc tcacaaatgc taccgccgtt acattctctg caccgcgttt ttctccggtt 13620 gtgagggcag atttgcgatc cgtgacaatc tttgcaataa tatttcactc tgccatgaag 13680 acacttataa tccgttgttc gctttacggg ggatactttc gggtctttca ccgtttggtt 13740 ctccatttct atcaaaccgg tcatgtcctt aaatcacttt tcaatccaac acgcgatacc 13800 cgccttctag ccggccgacg tctacctggc gaaacactct tccaacattt ccttctcttg 13860 ctcatccatg caccaatccc aaaacctgtc tggatgccaa gctactggca ttagttcgtc 13920 ctccagcttt ctacggaatc tcaccttgtg tagcttctcc gggagctcct catgcacgag 13980 accccacctc cacgccgcac gtagcaccgc gacaatttcg tgtagaccca aaaaccgcgc 14040 gtagttcata tgtacaatga gatcggtcgc gccccactcc aagcacaacc tcacaatctc 14100 gaggttgcca gattcggtgg ccggtgttat agcatagtcc gggtcaaact cgctgaagtt 14160 ttctctcagc aactttagaa cctcaacgtg accattgtac gccgcctcag cggtggccca 14220 accgacatcg acatcgacac ctagatctat caacaactca acaaccccca cctgaccttc 14280 cgccgccgca gcacccatgg cctcggtcat ggcctctcct ccgtcggcac aatactcgcc 14340 catcaccttc aaaacctcta cgtgcccgcc tttcgcggcc atggacgctg gatacacgaa 14400 gtcacaggcg cccgactcac aacacatctt aacgatctcg gcgtggccgt tcattgcggc 14460 cctgaccatc ggcttttcga aatccgtcgc accccaactc ttacacaacc tcacggtctc 14520 gacgcacccc tcccacgccg cgcgctccat aacggcgtca aagtctgcgg ctccccacct 14580 cgctaaggtg gcggcttgat cctccacggt gagatttgta agacttccag cactttgcat 14640 atccattttg ttattacatc cacgtcttta aaccactttt ttcgaatttt tttagacgtg 14700 ttaattcaca tctactccga actgacagtt ttctggaaat cctgatttct ctggaaatca 14760 ggaaacatca taccacacca ggcgtaccca ggactgtggc cacttctctc gctttcctac 14820 tgatggttaa ctcggagacg cccgttcttt cggagaattt tttaagtgta atatcgaccc 14880 cctttagccg tacccagtaa taggttaaag cgaccgcaaa ggattgtggg cgagcgcgat 14940 tcaactcaga cgagcggttc ttagatctgt agtagagctg gaccacctct cccttctgtg 15000 cgggggacgc cgagaatcta tccatcacat cgcgaatgtg gtccacgacg gtgggagacg 15060 ttccgtgtag taagtaatct ttaggcatgt taatactaaa gatttttaga cccttaaggc 15120 aactcttcct gctcaatcca aaagtttcca tcaaggtttt cggtgtctga cacttaccgg 15180 acatcttgta ggcgtagtag atacacgcaa agacgatcgc cttccgtggg tcgccgcgaa 15240 aaatctggcc tttcgtcacc tgagtgtata tctcgttagc tttggctaca attaccccgc 15300 taaaacccat gttctccaca tccttgtcaa tatttctatc ctcagaccta cgtacctgga 15360 cccgacttgg atccgaagac cgtttgccgt cggaatgtcc gtaaaaaccc cattcccttt 15420 cgtgcgcgat cacgcgctgc atctgttccc cgcactctaa gcaactagtg accccgtctt 15480 ctgtgactag gtcgtcatga ttgcaaaggg tgttactact atcctcgtct cccaaggagg 15540 ctctactagt ctcgtattcg gtgagggctc ggtcaaacag tgcaaattcc ggcatgaggg 15600 tggggacgtt aatctcaggc accggtccgc cggggatatt atatggtggt ggtgaccgat 15660 cttcaaccgt acgttcaact gttcgttcct ccattttatt aaactgttca tgtctttaaa 15720 ccacttttca aaggcttttt agatgtgaag ctgagaggct agcccctcga gctccctcta 15780 ggtgtgatgt gtgtggttgc taagacttcc gaaggggtcc gcgtgggggc ggtgcggtct 15840 aaagtctccg caccacattc gtggactagt atcttaccca tcttttttcg ccataccgtg 15900 gcatggagac taacattgct agaacaccaa ggacaattgt cgccgctccg gccacaaacc 15960 caacggggtc gaagcttccg tattctgagt cttcatagta atcagcgtca caacagcagt 16020 gttcaggccc cgcatccgca gtgttactca cattcacctc cagcaccgaa caaccgccgg 16080 ctgtagccgc atcgttttta atcttcacct ccgtctttaa tgtcatttta tctaggaccc 16140 catacgtctt tagaccagaa tagcctcctc gagctccccc taggtgcgac acgtgacaaa 16200 gtgattgaca ggtgggcttg gctatcacgt gacaaagtga ttgacaggtt tttgacaaag 16260 tgattgacag gtttttgaca aaatgattga caggtgggcg tggctatcac gtgacaaagt 16320 gattgacagg ttttttacaa agtgattgac aggtgggcgt ggctatcacg tgacaaagtg 16380 attgacaggt gggcttggct atcacgtgac aaagtgattg acaggtgggc ttggtcgtgc 16440 aagagatctc tggcaaactc gcgcatgcgc aggtcgcgag gcttggcgga ggtgcgcgga 16500 gacttttgcg ccacttttgg aatgaaattt ggggagatca aaaagttgcg ccagctgcgc 16560 caaaacccta ctact 16575 // ID Gypsy-79_NV-I repbase; DNA; NEM; 4030 BP. XX AC scaffold_8; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_NV_; KW Gypsy-79_NV-LTR; Gypsy-79_NV-I. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4030 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-3805 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_8; Positions 2047087 2051116. XX CC Positions [3075-3554] - Integrase core CC 'CCCCC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 44..2257 FT /product="Gypsy-79_NV-I_1p" FT /translation="MEKIKPPPELDMDSRNLAEAWREFEESWELYEISSGL FT TTKEEKVQVATLYSIVGLKARRVLKTLPGIPEAIAERKVKDTLKGLKDYCM FT PRTNVTYERYIFRTTTQGERQFDTFLTELRRKAALCDFGVIKDSLIRDQIV FT IGTNSPTLRERLLREPDLTLTTAINLCRASEQAIEQSKLITRPEQSQEIKE FT IDSLNARAPTQNQNKGQSFKCRFCGLQHDRGNCTAYNATCHRCKEKNHFAR FT CCTRKLPQPQAHQQQRGASRAIREVELQEQQDPNNLYKEIESLYIEEVKSS FT NKIKCVEQCLSLNGKNVTFKLDSGAECNVIPEAVAKELDCTIEQTALKLRA FT FGVGKCYIDTLVQGQESPIAVEYYIVEHNVRPILGVETCLKLGLITFSGGA FT RAQGLSIDALEQPRNLLDQFEDVFTGLGCVEGEYDICLKEGARPTIQHQRN FT VPLRLIEQLKTTINDLEQREVIKKVNEPVEWVSNLVIVEKKDKSLRLCLDP FT PDLNEAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLSDAASLL FT CTFNTPFGRFRFCRMPFGISCASEVAQKMVEEHFGDIEGVLPVYDDIIIAG FT KTTAEHDRALHKVLERARERNIRFNKSKIQYRLDKVSYMGEVVSNNRFTPD FT PAKVSAILKMPVPQCKKDLQRLLGMINYLSKYIPSMAELTAPLRMLLRKEA FT AWAWHPEHDAALAKLKTALTSKPVLRFYDIHLTYHLAG" FT CDS 2409..3938 FT /product="Gypsy-79_NV-I_2p" FT /translation="MYTYGADIDVMTDHKPLESIFRKPLHKVPPRLQRMRL FT RLQKYHTSVRYVPGKYLYIADTLSRAYDTEAQTQTNDMHDEMEHMVHCIMT FT DLPVSDTKLSQLQEITGKDQDMLLLGKYIREGWPQNRQSVPVQLRPYWNVR FT HDLHLLDGLVMKDQRIVIPVTWRPQILQQIHKGHFGIEKSKARARAAVYWP FT GLSANISEMITKCDKCLSLQRKQQKEPMQLREVPLLPWQHIASDIGEYQGK FT LYLVVIDYYSKYIEAVNMSGKKAGHVIKALTEIFSRHGYPETLTADNNPFN FT AEEMHEYASRCGFRVIPTSPLYSQSNGLAEKAVGIVKGILGKGCNLHEGLM FT VYRNTQVSNFPYSPNQMLFSRQVRTTLPMHPRALLPTVHDDIRIQLQDRQL FT KTKEYYDKGSKPIPPLKEGDMIRFQKPGEKNYSPGCVSGVHNTPRSYVITD FT QTGREYRRNRRALNASREPPLYVSKDDMLDSTFESENVVITPEEPRRSSRA FT KSAPVWHKDYIMDS" XX SQ Sequence 4030 BP; 1276 A; 866 C; 986 G; 902 T; 0 other; tggtaccagg agtcggaggt ccagggcgac aataatcata gatatggaga aaatcaagcc 60 accgccagaa ctagacatgg atagtcggaa tttagcggaa gcatggagag agtttgaaga 120 gagctgggag ctgtacgaga tatcgagtgg gctaacaaca aaggaggaga aggtccaagt 180 ggccacactt tacagtatag tggggctgaa agcccgaaga gttttaaaga cgctaccagg 240 aataccagag gcgatagcag agagaaaggt caaagacacc ctgaagggcc taaaggatta 300 ttgtatgccg cgcacgaatg taacctatga gaggtacatt ttccgaacaa ccactcaagg 360 ggaacggcag ttcgatacat ttctaaccga gttgagacgc aaggccgcgc tgtgcgactt 420 tggtgtaata aaggactcgc tcatacgtga tcaaatcgtt attggaacca acagccctac 480 gctgagggag cgactcctcc gtgaaccgga tttaaccctc acgacagcca taaatctgtg 540 ccgagcttca gagcaggcga ttgagcaatc gaagttgatc acgaggccag agcagtcaca 600 ggaaatcaag gaaattgatt cgctaaacgc aagagctccg acacagaatc agaacaaggg 660 acagagcttc aaatgcagat tttgtgggct gcaacacgat cgggggaatt gcacagcata 720 caacgcaacc tgccatcggt gcaaggagaa aaatcacttc gcccgctgtt gcacgaggaa 780 actcccccaa ccgcaagcac atcaacaaca gcgtggtgct tctagagcta tccgcgaggt 840 cgagttacaa gagcagcaag acccaaacaa cctgtacaaa gaaatcgaga gcctttacat 900 cgaagaggtc aaaagtagca acaagataaa gtgtgtggaa cagtgcctga gtttgaatgg 960 gaagaacgtg actttcaaat tagacagcgg cgcagaatgt aacgtgatcc cggaagcggt 1020 tgcgaaagaa cttgactgca cgatcgaaca aacagcactc aaactacgag ctttcggagt 1080 aggcaaatgc tatatagata cacttgtcca agggcaagag agcccaatcg cagttgagta 1140 ttatatagta gagcacaatg ttagacccat tttaggcgta gaaacgtgtc tgaagttagg 1200 tttaatcaca tttagtggtg gtgcgcgagc gcaaggtctt agcatagatg cgctagagca 1260 gccacgcaac ctcctggatc agtttgagga tgttttcaca ggtctgggat gtgttgaggg 1320 tgagtatgat atctgcctca aagagggcgc aagacctaca attcagcacc aacgaaatgt 1380 tccactgcgt ttgatagagc agttaaaaac caccatcaat gaccttgagc aacgggaggt 1440 aatcaaaaag gtcaacgagc cagttgaatg ggtgagtaac cttgttattg tagagaagaa 1500 agataaatcc cttagactat gcctagaccc ccctgattta aatgaagcca ttgtaaggga 1560 agattataaa ccgccttcaa tagagaaaat atcaagcacc cttaatgggt gtacggtatt 1620 tacagttgta gatatgtcca gttgctattg gcataagaag ctgagtgatg cagcatcatt 1680 actctgcaca tttaacacgc cctttggtag gttccggttt tgtagaatgc catttggaat 1740 ttcatgtgct agtgaagtgg cacaaaaaat ggtagaggag cactttggtg acatagaagg 1800 tgtgcttcct gtttatgatg acattattat tgcaggaaaa acgacagccg agcatgacag 1860 agccctacac aaggtgcttg agagagccag ggaacgcaac atcagattca acaaatccaa 1920 gatacagtac cggctagaca aggtaagcta tatgggggag gtggtcagta ataacaggtt 1980 cacgccagat cctgctaaag tatcagccat tttgaagatg cctgtcccgc agtgcaaaaa 2040 ggatttacag agattgctgg gaatgatcaa ctatttatca aagtacatac ccagcatggc 2100 tgaattgact gccccattga gaatgctcct gaggaaggag gcagcctggg cctggcaccc 2160 agagcatgat gcagcattag ctaagctaaa gacagcactc acaagcaaac cagtacttag 2220 attctatgat atacacttaa cctaccacct tgcaggttga cgcctcaaag agtggacttg 2280 gagcctgttt gctccagaat ggtcaacctg tagcatatgc ctccagggcc ctgactagtg 2340 cagagcaaaa ctatgcacaa atagagaagg agttgctggc aattgtattt ggatgcgaga 2400 gattcaatat gtatacctat ggggcagata ttgatgttat gactgaccat aaacctttag 2460 agtccatctt taggaaaccg ctgcacaaag tgcctccccg tctacagcga atgaggctga 2520 gactccaaaa ataccacact tctgtccgtt acgtgccagg caagtaccta tacatagccg 2580 acaccttatc cagagcatat gacacagaag cccaaaccca gactaatgac atgcatgacg 2640 aaatggagca catggtgcat tgtattatga cagacctgcc tgtctcagac acgaagctct 2700 cacagctcca agaaataaca ggcaaggacc aggacatgtt acttcttggt aagtatataa 2760 gggaagggtg gccgcaaaac agacaaagtg ttccagtgca acttagaccc tactggaatg 2820 tgcgtcatga cctacacctg ttagatgggc ttgtcatgaa ggaccagcga atagttattc 2880 cagtcacatg gagaccgcaa attctccaac aaatacacaa gggccatttt ggtatagaga 2940 aaagtaaggc tagagcacgg gccgcggtat actggccggg tcttagtgcc aacatctccg 3000 aaatgataac aaaatgtgac aagtgtttaa gtttacagag aaaacagcag aaagagccaa 3060 tgcagctcag ggaggtacca ctgttgccat ggcaacacat tgcatcagac attggtgagt 3120 atcaagggaa gctctaccta gtggtcattg actactattc caagtatata gaagcagtga 3180 acatgagtgg gaaaaaagct ggacatgtta tcaaggcgct gaccgaaatt ttttctagac 3240 atggataccc tgaaacgctc acagctgata acaacccttt taatgcagaa gaaatgcacg 3300 aatacgccag tcgatgtgga tttagagtta ttcctactag tcctttatac agccagtcca 3360 atggcctggc agagaaagca gtagggattg taaagggaat cctaggtaag ggatgcaatc 3420 tacatgaagg tctaatggtc tatcgcaaca ctcaggtaag taattttcca tactctccta 3480 accagatgct tttcagtcgt caggtacgca caaccctccc catgcaccct agagcacttc 3540 tccccactgt gcatgatgac atccgcatac agctacagga tcggcaattg aaaacaaaag 3600 agtactatga taagggatca aagcccatac ccccattgaa ggagggggat atgataaggt 3660 ttcagaaacc tggggagaag aattacagtc ctggttgtgt cagtggagtt cacaacactc 3720 ccaggtccta tgtgataaca gatcaaactg ggagggagta tcgcagaaat aggcgcgcgc 3780 ttaatgcatc tagggaacca ccactgtatg tcagtaagga tgatatgcta gatagcacct 3840 tcgaaagtga aaatgtagtg atcactccag aagagccacg tagatctagt cgtgccaaat 3900 ctgcaccagt ctggcacaag gactatatca tggactctta gcacatcata tcttatcctt 3960 attatgctat tgattaatta tgattattca tagattatta attattgtat agcttaactt 4020 gagagggggg 4030 // ID hAT6-N3_NV repbase; DNA; NEM; 920 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A family of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW NVREP271; NVREP279; hAT6-N3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-920 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-920 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1196-1196 (2007). XX DR [2] (Consensus) XX CC It is a family of non-autonomous hAT DNA transposons that belong CC to the hAT6 group, characterized by 6-bp target site CC duplications. hAT6-N3_NV contains 13-bp TIRs and shares common CC termini with the autonomous hAT6-2_NV. The hAT6-N3_NV transposon CC contains a copy of a DNA-3-5_NV transposon (masked by "N"s); its CC copies are occasionally also flanked by 7-bp target site CC duplications. XX SQ Sequence 920 BP; 247 A; 191 C; 151 G; 276 T; 55 other; catacctgcc aactctcccg gttttaccgg gagactcccg gttttttatc aaatctcccg 60 gtctcccggt tttaccttaa atctcccggt ttatgaccaa attttaatca gtcgagttgt 120 ttttgaagta aaagttggat tttagccaca aagttatgca attcttatag tttgtattca 180 agttatgacg ttttcaggtt tttcgagaaa ctttaaatga gccttttcca ggcgtttctt 240 gtagaccaca ggactactac cgcaatactg aaatgcttgc atatatcgac caatcaagtt 300 tgaccatatt ttcgtgcgaa ttgttgagaa attggctcat actttggagc cgttttcgcg 360 cgagtttgta agttggcgtt gtaaatcatg ccggccacaa acttcaaggc tcatcagaga 420 gaatttttag gcgctctgtg gtcaggatac gatggaataa aattctggcc tctcaaaaag 480 tagttgaaat tgacgttctt gacatcgaac catnnnnnnn nnnnnnnnnn nnnnnnnnnn 540 nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa agtgaacatc gcgaaaattt cgatcaaagt 600 tttcaccatt ttatcatatt ttatcaaata aatataaact gagattgtac aagcgtaata 660 tcgtttgaat atattattca gaatatttgt tacaaagttg aatgaatttc tggaaaaaca 720 gacttatttt acctatcatc ttttctttcg ctttacgata gggtacccaa caacaataag 780 agaacaaaag aacacacaca tcttcgagca aaactctgtg atttgctaat ccccccaccc 840 cacccccctc atcccgtacc ccctcccctc ccccctaaaa taatctcccg gtttttcaag 900 tctgggggtt ggcaggtatg 920 // ID Gypsy-58-I_NV repbase; DNA; NEM; 4247 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-58_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58-I_NV; KW Gypsy-58-LTR_NV; Gypsy-58_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4247 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4247 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-58_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 551-551 (2007). XX DR [2] (Consensus) XX SQ Sequence 4247 BP; 1317 A; 936 C; 1022 G; 972 T; 0 other; tggcgtcaga agtggtacaa ctcagtctgt tcaattgtgc gttggtactc tactagtttt 60 taagtatatc gggatttcct cgccgtattt ttgcctgggc ttcgagtatg gaatatgccg 120 gataccgagg atgaaaatgt agctgcttct catccccagt ttatacaatc cagtacacct 180 ttgccgggaa aactcgaact caaggggaac cttggctcaa actggaaaag gttcaagcgt 240 gtgtgggata actacgagat cgcctctcgt cttaatactc agagtaaagc tctccgcgtc 300 gctacgttgt tgacatgcat tgggccagat gttttagata tctacgatgg gttgccgttt 360 gaatccgaag ccgatcagaa ggatatcgat aaggttctaa agttattaga ggcatactgc 420 atcggcgaaa ctaatgaaac ctacgaacgg tatgtgttca ataaacgaga gcaagatcaa 480 ggtgagtctt ttgattcata cttgacatgt ttgcgccctc tagccaaaac atgtaatttt 540 gatggcttga tccggaacaa aatcgtcctg gggatcaacg ataattccac tagaaagaat 600 ctattagccg aaagtaaact tactctagag aagtgcatta acatctgcag agctaacgaa 660 actaccgcta agcaatttaa ggacataacg agcgaagata ttagcgcagt cgaatcgtac 720 cgccgccccc agcgcaccac aggcgtcccg cagaataaag gccagcgcga cacacaacac 780 cccacaatca attgcaagtt ttgtttaaaa aaaaaacacc aaaaaaagaa ggaactatgt 840 ccagcctgga tgaaacaatg caacgattgt ggtaccgcca atcacttctc gggctcctcg 900 atgtgcacgg cgagtccgaa gttcgcacaa aagccggggc aaaagcccag aagtagacca 960 gtgcatgggg tagaagaatt ttcggatgaa agtgatgatt attttttcta tgtggaatcc 1020 gtaggcgcag tcaatgctgc gcaatgtaag cgtaagattt ttgcttcaat gcaactaaga 1080 gatgagcaag tttaatttca actagattgt ggcgcgacag ttaatattct acctgtagac 1140 aaatacgtcc agatattcaa tgacccatcg cacgccagat taaagaaaac caacaaaacc 1200 cttcaaatgt ttaataagac tgagttgaaa cccataggaa cggtgaagat cgagagtgtg 1260 aacccaaaga atgaggacgc aatattactc gagcttgtag tagtaggcgc gcaagccatc 1320 caacagtttc agctcatgac aattaacagc gacaatatcc tgtcagtcaa tgagttccaa 1380 tccactcagc aagatatagt tagtgagttt ggcgatgttt tcgaaggtga tggcgtttta 1440 caagaaaaac ttcaccttaa agtcaacaag acagtaacgc ccgtggcgtt gcctgtccgt 1500 aaagtcccat ttgcggttag agaacccttt aaacgtgaac tggacagact agtagataag 1560 gggatattag tgccagtcga agtccccact gactgggtct cttcaatggt agtggctgtg 1620 aagcgtaacg gtaagatacg tttgtgcatt gatcccaaac cgctgaacaa ggctctcaag 1680 agaaaccgat acccgctacc tgtcatcgac gacttgctag cgaagctcac gaatgcaaag 1740 gtgtttactg tcgttgatgc aaaaaacggt ttttggcatg tccaacttga cgaagagagt 1800 agctacctca ccacgtttgg taccccatgg tcacgatacc gatggacgcg catgccattt 1860 ggaatttccc ctgcccctga agaattccaa cgtcgactag acaacgcact tcaaggtcta 1920 gacggagtaa tgcccatctt tgatgacata ctgatctttg gcgccggcga cactgaagcg 1980 gaagcaatag ctgatcatga cgcgaaactg agagccctac ttcaacgatg ccgctagaag 2040 ggtgtcaagt taaacaaaga aaagttgaag ctccgttgca gcgaggtaga ctttatgggt 2100 cacgtgatcc cctctgatgg tctaaagcct gacccagcaa aactacaagg tatcaaggaa 2160 atgccgccgt cgacctgcaa gcaagatgtg aaacgactcc tcggtatggt caactaccta 2220 caacgtttcg cgccaaatct attcgaagtc acagcaccac tgagagatct actcaaggaa 2280 gacaacatat tccagtggga ttccgtccag gagcgcagtt tcgaagcagt taagaagaga 2340 atctctgaga caccggtcct caagttattt gacccgacag atagtgttga gcttcaatgt 2400 gatgcatctg acagaggctt gggtgcttgc ctgatgcaac atggccagcc agtggcgtat 2460 gcatcacgct ccatgacgga aacggagaca cactacgcgc agattgagaa gagatgttgg 2520 ctatcgtctt cggagtggag aggttcgagc aatgtgttta cggccgacaa gtgaaggtac 2580 aatcagacca caagccgctt gaaagtatat ttaagaagag cctgattagc gcccctaagc 2640 gactccaacg catggtgctg agacttcaaa aatttgactt ggaagtgagc tataagaaag 2700 gtacagaaat ggtactggcc gacactctaa gcagagcata taaggtgcta ccaacaggag 2760 tagcagaaga gagaggtgaa accgagaaag ataccgagtc aattaacatg gcacaatacc 2820 ttgcagtttc aagccagacg caggcagaga tccagcgcgc cacagaagca gacgatgtgg 2880 tgcgggagtt aaaggcagtg ataaggcaag gctggccttt ggcgaaagac gacctacaag 2940 tctgtctcag ggactacttt ccttttagag atgagctcac cctacaaaac gggcttattt 3000 tcaaaggtga aagactcgtt atgccaacat ctatgaaaga cgaaatgtta gagaagctgc 3060 actctagcca cattggtatt caaggttgct tgaggagagc tagagagaga gtatctactg 3120 gccaggtatg aataaggcag tcgaagatta catagcaagg tgtgacacat gtaatacata 3180 ccaagcggag caaggcaaag aaccaatgat ctgccacgag ataccatccc gaccatggga 3240 aaaggtagga tagatatgtt tgaacttgac aataaagact ttcttgttag tgttgactat 3300 tactcaagtt tctttaaagt tgaccggttg gcctctaaga ctgcaaaaga agtaatcgga 3360 aaaattaaag cacacttcgc aaggcacggt ataccagacc aagtgatcac tgataatggt 3420 caaccatttg catcgggaca ttttctagag ttttcaaacc actacagctt cgagcatgtt 3480 acaagttctc cgacttacgc tcaatctaat ggcaaagtag aaaatgccgt taaaatagcc 3540 aagaagctga tgaggaaagc tttcgaatta aagaatgacc cctacatggc tctgctcgac 3600 tggagaaata ctccatcaga atgtcttaac tcatcgccag tgcagagaat ctttggtcgg 3660 agaaccgaaa cactgttgcc aacgtcgact cgactgctta accctaagat tccagataat 3720 gtcgagcaaa agatcagtgg gcagaaggct aagcaaagct actattataa cagaagtgca 3780 aaggagttaa aggaactgaa gcctggtgat gttgtgcgca tagagccacc aagaggaatt 3840 ggcagaggaa aagcctggac taaagcacat gtagaaagaa aggtggacgt aagatcgtac 3900 aatgtacgca ctgaggatgg cagagtgttc cgcagaaaca gacggcatct tcgccgaact 3960 caagaggata tgaagcctcc aacggatgaa ccgttacaac caccgcaaga gcgacttatg 4020 cctccttctc caccacaagg gttaccgcag tcactaacaa gcgagacccc aagggaggta 4080 caacaggagc agcccacagc aacgcaagag acagctagtg cccctgtcgt cacgcgaagt 4140 ggaagggttg tgaagcctcc cgttcgattc cagtaattgt catcagaact ttgaaagttt 4200 tttatttgta tatagcattt attcgagttt tgttatggag agggaga 4247 // ID Harbinger-N6A_NV repbase; DNA; NEM; 2018 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP185; Harbinger-N6A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2018 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2018 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2018 RA Kapitonov V.V. and Jurka J.; RT "Harbinger-N6A_NV transposons in the starlet sea anemone RT genome."; RL Direct Submission to RU (11-FEB-2011). XX DR [3] (Consensus) XX CC Harbinger-N6A_NV is a consensus sequence of a subfamily of CC non-autonomous Harbinger transposons. It is a composite CC transposon: a copy of DNA-5-2_NV is masked by Ns. XX SQ Sequence 2018 BP; 586 A; 316 C; 345 G; 468 T; 303 other; gggaaagttc atttattatc ccgagggggg gggggtgagg attttgataa aagtgaggga 60 taaaattagt tgagtaacaa aatttttcat gccccccctt acgcttcccc catattttca 120 gaaaaccgaa aaaagaagga gcaaaggaag gaacagcaat gtctaaggaa cgcacaagct 180 ggacaaaaag tggaggggaa ggaattggat gaaaacatta attcagaaaa agtgaaggca 240 ctcaatttct caaagatgtg actaactcca ggttgcaacc tgataatggt tgatgctata 300 gatgacgtaa aagaagcaaa aaaaggcttt tcgatcttct ccttgcaaga aaagcgcagc 360 atgagaaaag aaagagagcg aggaagacag gagaatcaga tatgagcgag gattttgatg 420 atggagaatg agcgcttata gcattaaaac tttttgttta tattttagat atggaacata 480 agcactttat aatataatat tatatagcgg agaccataaa aaagatgtat ttagggtgta 540 tacaggtttg cattgcatag ataaaacatg gcttaatnnn nnnnnnnnnn nnnnnnnnnn 600 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 720 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 780 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn acatatcctt gactcctgga 900 ttgtgcatgc caaataactg ccccaaaccg agacattaaa ccaagaagtc tgatttgaca 960 cttcgtcaaa ttatatagta gagacaacta ggcatatgta gattgtgctc ggcaactttt 1020 gagcaacttt tggcgttttg agcaactttt cgaaggacca gcaacctagg gcaacttttg 1080 ccttcctttg caacttttga gcaacaaatt ggtataaaat cgatccaaac catcaaaaag 1140 ttcgttattt catctaaaaa tggtcctgga cagtcctcac tcgttttacg tgtgcccacg 1200 aaatctggac agcggctatt ataacgggcg tttaaatatc cagcggttat atcgaggttg 1260 caagggacgc tggggcaact ctcattaaac ccacaagcgc atcgatctct aggaaaccta 1320 aaatctgcgg tgaatgaagg gaaaaacagg caacgaaaga gcggtcaatc gacgtcgtca 1380 aatgcaacat gcgctacgga tcgtgtgata gagtttccaa aacagcattg cgtgtagcga 1440 gacttgatcg atcagtatag gctgtgaact ttatcactgc ctaaagcatc atggagtata 1500 ttatatatga tgtatatact gcatttaata acatgatgcc tatccaagtg aactttgact 1560 agttagaaaa tttactagaa aatacgtatc ctatttattg ttgagttaaa agagattgat 1620 tgacaaatgt atttatattt taatgattaa ttaaacatat tttaatgatt ggaaaaaata 1680 tttaatgaaa ttgttgaaat gaaaacaagc aaacaaatat gttttgagca tttatctaga 1740 acaaacgact ctagagagcg agcaactttt ttaatttctg gtggcaactt ttggatatat 1800 tagcaatttt agagcaactt ttggccatat tttcaagcaa cttttcccaa atttactagc 1860 acaatctaca catgcctaga gacaacaccc aaaggaatca gtgacccccc ttttaaaatc 1920 caaacacttt cgacgccccc ctttagacct cggaaatttt tcgaggcccc ccacagtatc 1980 ctcacccccc cccctcggga taataaatga actttccc 2018 // ID hAT1-3_NV repbase; DNA; NEM; 1986 BP. XX AC . XX DT 06-APR-2008 (Rel. 13.04, Created) DT 06-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE hAT-type autonomous DNA transposon, hAT1 subgroup - consensus. XX KW hAT; DNA transposon; Transposable Element; hAT1 subgroup; KW hAT1-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1986 RA Jurka J.; RT "A subgroup of hAT elements from starlet sea anemone genome."; RL Repbase Reports 8(4), 382-382 (2008). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(210..380,395..1486) FT /product="hAT1-3_NV_1p" FT /translation="MASNGFSVIFDGSTRLGEALAILLRYVDQQYKVQQRL FT EIEVLARSLNAEQLAQRLIQGILPNHLLAAMRDGAAVNEAALRQVGFYFPN FT VFNVKCFSHTIDNAGKHFEFTVLETFSRYWNTMYSHSPAARLAWKTRTGTS FT MKLRSETRWWSNYEVLDLVTQYYGDVEPFLRENHLSPMCRAKLLEVFDDPE FT ATRDLEMELVALADAGKHFVSATYYLEGDGPLVFSCYERLSTVAHAIAIEA FT YRNVEAKAKQHANDDPGIYNELVAKAKACIAPGFQYFQRKFSVEFRSTVRA FT FKAARLCCPVKVQELHPNAASVEELQEFGFFSNDEVASLVEELPSYLAAAD FT GVVCTTEEEKVSWWADHVDTLPNWSAATKKILLIQPSSAAAERVFSLLQNA FT FSRQQDSALEETLEVSVMLRYNDNKRV" XX SQ Sequence 1986 BP; 531 A; 391 C; 458 G; 605 T; 1 other; gcaccataag gttccactct tccagaggaa atgcgcctct atcgctacga gctggtagag 60 ataatgctca aagctgggat tcctcttgca aaagttgatg ttcttagacc tttccttgaa 120 aagtatggcc atcgattgac cactcgatcc catctgtcag agttcatccc tttaatatca 180 gagaaagaga agatgctgta aagactgaaa tggcctcaaa tgggttctct gttatctttg 240 atgggagtac aagacttggc gaggccttag ctatcttatt aagatatgtt gatcagcaat 300 ataaagtcca gcagcgactt gagattgaag ttttagctcg cagcctcaat gcagaacagc 360 tggctcagcg actgattcaa tgattagcag ttgaggcatt ttacctaatc atcttctggc 420 ggcaatgagg gatggtgctg ctgtaaatga agctgccttg cgtcaggttg ggttttactt 480 tccaaatgtt tttaatgtga agtgcttttc acataccatt gataatgctg ggaaacattt 540 tgagtttaca gtgctagaga cattttctag atactggaac acaatgtatt cccacagccc 600 tgcagccaga ctagcttgga agacaagaac agggacttct atgaagctga gatcagagac 660 aagatggtgg agtaattatg aagtgcttga tttggttacc cagtactatg gagatgtgga 720 gcccttcttg agagagaacc acctctcacc catgtgcaga gccaagctgc tggaggtgtt 780 cgatgatcct gaggctacac gtgacctaga aatggagctg gttgctttgg ctgatgcagg 840 caagcatttc gtttctgcca cctattatct agaaggagat gggccccttg tattttcttg 900 ttatgagcgc ctgtctacag tagcccatgc tattgccatt gaggcatacc ggaatgttga 960 ggccaaagca aagcagcatg caaatgatga tcctggtatc tacaacgagc tggttgcaaa 1020 ggcaaaggcc tgcattgctc caggttttca atattttcaa aggaaattta gtgtagaatt 1080 ccgttctacc gtgcgtgcct tcaaggcagc acgcttgtgt tgccctgtga aggtacagga 1140 actgcaccca aatgcagcat ctgtagagga gctgcaggag tttggatttt tctccaatga 1200 tgaggttgct tctctggttg aagagttacc aagctacttg gccgctgcag atggagtagt 1260 ttgcaccaca gaggaagaga aagtatcttg gtgggcagat catgtggata ctcttcctaa 1320 ctggtcagcg gctacgaaga agatcttact catccaacca agctcggcag cagcagagag 1380 agtattcagt ctcctacaaa atgcttttag ccgacagcag gacagtgcac tagaggagac 1440 acttgaagtg tctgtgatgc tcagatataa tgacaacaag cgagtttgaa gtgyctgtga 1500 tgctccgata taatggcaac aagggagtgt tgcctcacta gcctgcatgt gctttggcta 1560 tcagccatgt tgttataaaa ctcacatgga caactctttc tttaagttgc actgtgaacc 1620 aagtcgtttc gttttttcat gatgcctctt ttattgcatc ataatttata tacatattac 1680 attgcatatt acatatttac attaaatgtc caatcaatgt tttttttaat gttgaaaaga 1740 attgttaagc agcattctct ctgcaacttt gaaaaatgta gtaaatttgt tggcaaattt 1800 ttacacttgg gacaattttt cgataattct tattccattt tttgagcatc tttttggcaa 1860 cttttgcaaa tttgtggcaa ctttgtggca acttttgcaa tttttggagc aacttttggc 1920 aacttttttg gtatttttgg agcatctttt taagaaattt ggagcatctt tgggacagcc 1980 ttagct 1986 // ID DNA-9-17_NV repbase; DNA; NEM; 966 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-17_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-966 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-966 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-966 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-17_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 966 BP; 244 A; 215 C; 227 G; 280 T; 0 other; taccctgggt accagagcct ccagacttct ctcgtccagt gacgctcagc caaaatgccg 60 tgacgagcga agcgaggagg ctctgggcgg gcgagtagct tttttcagtt ccagaaatac 120 agattttgta ttctgcagct gattggtcaa cgagattgtc atagtaacac aaaaccatat 180 ttggtcaata tacccatatt tgggattagc ttgaaaaaaa cggttgtcgt tgttttgcaa 240 aggttgaaag ttcagctgtt cgatcgcgtg tagttggttt gcttacacac aagtacacat 300 ggatttcaac gctagtttcg acaacggtcc ttgattctcc ttattgtttt cgggctggga 360 gctgcaggga tcttgcagtt tgtaccgaag gcgaagttga agatggagct aagcccgccc 420 gcatcggggc gcgaacggtg actttctgag gcttttccaa cctatcgctc tcgattgctc 480 acatgtcctt gcatttgttg atttgaattt ttgcagttct ctatcaatga ttcctttaca 540 ttctctagct ttccaagctg ccttacgcag gtggtttctt attgtaacgt ttgctggtaa 600 agaataataa acagacgttc tacgaatcgc tccttctttg tcttagagcc agtaaacaaa 660 ttaaacttgc ctaaagaagt gctgttgcag atatgacaga aataagtgca ggaaaatttc 720 tccatgggcc attcggcgat acttttaatc actcgagtat gaaaataaca acaaaacttt 780 gaaagcttac agctctcgtg ttgtgtgact gacgtcatac ctgcaaaacc ggtttaggca 840 tgtaattcga gactggaact gaaaaaagct actcgcccgc ccagagcctc ctcgcttcgc 900 tcgtcgcgac attttggctg agcgtcactg gacgagagaa gtctggaggc tctggtaccc 960 agggta 966 // ID Gypsy-5-I_NV repbase; DNA; NEM; 5470 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-5_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5-I_NV; KW Gypsy-5-LTR_NV; Gypsy-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5470 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5470 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-5_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 555-555 (2007). XX DR [2] (Consensus) XX SQ Sequence 5470 BP; 1482 A; 1285 C; 1507 G; 1196 T; 0 other; tattggcacc cccgacggga cgttcgagca gttagacatg gatctttcga tagaggagaa 60 gttgtatatg gaacaaaagc gggttactga actcgtagcg gagttgaaaa cacaaggagc 120 tccctcggag gaatttcgta ttcctgtggc aaaactagtc gaagagtatg agaagaaatt 180 cggatcgccg ctgaagtttt tttaaggagg aatttgtgaa gctggagtct tttttacgac 240 attgctgtgg actacaagtc gaaggagacg aagtccgttt cgtgcatggg acgactaata 300 acgcgagcgt gaaacaacaa catcaacaac aacaaatcct atcgcgtcct caattctcgc 360 ccttttacgg gtttagcacg aataaggaga aaggcgtttc atacagagtg tggagattcg 420 aagttgagag cacggttcga ggcggccttt attcgacgga ggtgatttcc gaacaaatcc 480 gccgttcact acagggggaa gcgaaaacca aactcgtggg attaggggtc gacgcatcgt 540 gtgaagcgct gttggaaacc ctcgatcaat tctacagcga cgcgctgact gccacagggg 600 acgagctttt agcggaagct tatactttta agcagaaaga aggggaagaa gtagcgtgtt 660 ttgcctcgcg cctcgacaac cacgtgaggc tcgcttacgt aaggaataca gaactcttgc 720 cggacgaaag cgccgttgag aggcaactgc gtatgctgtt ctgggcaggc ttgcatcctg 780 agatcaaaga caaagcaaga caccgtaaag acgcgtgcaa aagcttttct gagcttatca 840 ctgcagcccg atacggagaa aaagagctct cctcgaccca ggccccaaaa cgcgtggccc 900 gatccaatgt taccgtcaag gccgaaccac aggaagcccg ggaaagcacc aagaaagaaa 960 aaacagaatg gatagcagaa atctgcgcag ctttctcgag agaggttaga ggagtcctta 1020 aggaaaccct ggagcggggg cctggggccg atgagagtgc tccgctggat tctgacgtgg 1080 gacgagcccc tatcgcgaga gggcggcggg ctcaagagcc tagtggcgac cgcccgacct 1140 gctacaactg tggagaacgg ggtcacgtgg ccattggctg cagaaacccc ccgcagttcc 1200 gtaaccaggg aaacagaccg cctcagcagt tcggtaacca gggaaacgga cagaggcctc 1260 tgccatgggg caatcagagg tcttaaacaa ttcggacagt cccccacctg ttggaattag 1320 tgcccgagaa ttaccaagcg acctagtcgg cgaagcaaat gagtgtgtag cctttgcaga 1380 tggcaatgct ggcttggcgc tgctcgacac aggcagtcag gtaacatcgg tttccgaatc 1440 attctacaaa cgctatttgt tgcatcgtgc tgtgagacca ataagtgatc tgatacgtgt 1500 tgttggcgcc ggtggccagg atgtaccatt tataggctac atatcggtgg aattttattt 1560 tcctgtagaa gaaattggga ctaatgagac gtttgagaca ctggcactag tggtacctga 1620 taatgagtac aattcgcgtg tgccttttgt gatcggcact aatttgtcac ttagatgtag 1680 gcggagctgt cagatggcac aaggaaaatt gttcccacaa aacgcaagga tttcggcaac 1740 gtggatgtgt gtttatcgtt ctttaaaaca attcgctaaa gttttcggtg aggaaacaga 1800 cggtaggatg acaataagga gcgcgtcacg acattccata aaagtggggc ctcaagaaac 1860 tgtgtgcatt tggggagttg ccccgtctat gccagggtgt aatgtgaaag tcttgattga 1920 gacaggggct ggcaggtcaa actcaatggg actatcggct acgcctagcc taattagctt 1980 acctgggaag ggaaccaagt gtcgtgtgcc agtagagttg acaaacaact ctacgcagcc 2040 aatcactatt ccccgtaaag cagctattgc tagtgcacag gtggtacaag gagtggtgga 2100 acaccgttcg gtaggcgacc acgggtcaac tacagtgata gaggtcgacc tgtcggatac 2160 tcctttgtcg cctgcacaaa aggctagggt gcaatcgttg ataaacaaaa tgtctcacac 2220 ctttgcaatg cacgataagg atttgggcag gactgacgca gtgaagcata ctattaaatt 2280 gactgacgat atcccggttc ggcaacccca tcggcgcgtc ccccctggac agcttgaaga 2340 gtttagatct gcaatcgagg atttgctaga atcgggtacg atacgcgagt ctaatagccc 2400 atatgcctca ccggttgtcc ttgtccggaa gaaagatgga gctttgcgcg tatgtgtaga 2460 ctttcggcag cttaatgcga agacggtcag ggactcttac ccgatcccgc gtattacaga 2520 aaccctggag tccttacaag gggcgcaatg gttttgttca ttggacttgc agagtgggta 2580 tcttcaggtc gaggtagaag aagaggacaa gtctaagaca gcgatgacca cgccttttgg 2640 attgttcgag ttcaacagga tgccatttgg attgaccaac agtccagcaa cattccaacg 2700 tctaatggaa cgttgtttaa cggggctaaa cctgaacatc tgtttggcat acctggacga 2760 cgtgattgtg ttcgcaagaa ctttcgaaga aatgcttcat cgcctggagg cggtacttca 2820 gcgtttaagt gagtttggtc tgaagcttaa gccctctaaa tgcaagtttt ttcagacgga 2880 actcacctat ttgggacatg tggtcacaag agagggggtc aagccagatc caaagaaggt 2940 agaagcattg gaggagtggc gtcaacaccc tccaaccaat gctaaggact tgcagacctt 3000 ccttggtttt gccggatact accgtacctt tgttgaacgt ttctcggtta tcgccgaacc 3060 tctcaacgag ctgttacggg aagaggcagg aacgaagcgc cagtttgtct ggacagcgga 3120 atgtcagggc gcgtttgaat gcttaatcga caggctttgc tctagtgcag tcctcgcctt 3180 ccctgatttt aataagcctt ttgtgctgca taaagacgct tctggcgagg gccttggagc 3240 agctctgtat caactccaag aagatggtat tccaagggta attgcgtatg gcagtaggtc 3300 gttgtcagca gcagaaagga gatactgcgc gtaccgtcgt gaattccttg cgctaaagtg 3360 ggccgtgaca gagaaattcc acgactactt gtacggacgc cagtttcatg tgataacaga 3420 tagtaacccg ctgacctacc tactgacgag tgccaagctt agtgctagtg atcatcgttg 3480 gctttccgca ctttcttcat ttgatttcac tatcagctat cggccaggaa aatcgtgcgg 3540 ggacgccgac ggtttgtcca ggatgccgca agcagacaac tcatgctctc caccagaggc 3600 gagcagagag gactttttac gaccattctt agacaggctg ctacctgttg gagcacaacc 3660 ggaagtgttt tccctcgatg agttgcaagt gttatgtgac gctcacgtag caacgccgcc 3720 gcctctctgc cagcagcagc aaagtgctcc aagcttagta gttactcccg ctgaatggtc 3780 acgacgccag aaagaggacc cagtcataca gaaggttatg cacgcagtaa aaaccaataa 3840 gcaaccgacg caaacgacta gcagagaaga gaaagctgct gtccaacgca tttggaagga 3900 aaaggatcgc ttggttatcc gaagcgaagt gttgtatcgc cgaagaatcg tcgaggaagg 3960 agaaagcttc cagctggtgt tgcctgcggc gtacagaggg cttgcactca agggtcttca 4020 tcatgattgt gggcatctgg ggagggacag gacattggac ctggtgcgcc agaggtactt 4080 ctggcctggg atggctgcag acgtgacttc atatataagt acctgcgatc gctgcatcaa 4140 aaggaagtca ctagacccac cacgggctcc aatggttcca atgatagcga cagcacctat 4200 ggaactcata tctatcgact tcatgtcgct cgagaaaggg aagggtgggt acgagcatgt 4260 gttagtcgcc accgatagtt tcaccaagta tacatgggcg ttccccacac gaaaccagaa 4320 ggcatcgacg gtagctaaga tcctgtggga gagaattttt gtgagttacg gatttcccca 4380 gaggcttcac tcggaccagg gaagagattt tgagtcgcga ctgctcacgg actggcaaat 4440 gtggaaaagt cgagaacaac accataccat ccacaaggca atggccagac agagcgattc 4500 aacagaactc tactcaatag gctggggacc ctggaagtag ataagaagaa gggttggccg 4560 gattatgttg caggactagt ccatgcttat aacgctacca aacactcaac tacgggatac 4620 tcaccgtcat atctcatgtt cgggaggaac ccaagactac cccaggatgt gactcttggc 4680 ccggaccccg tacatgaccc acagccgtac gctgcatata tagagaacct ccgcgacaag 4740 ctgacagatg catattctcg agcacaacag gagatagaaa agaaagccga ggctaataag 4800 cgccggtatg atgcactaag tgaagacctc gctctccagc ctggggacag agtcctggtg 4860 agaaacctca gcacaagagg caagcacaaa ctgcaggatc gatgggagga tgtcccatat 4920 cgagtcgttc gccgctctgg ggagcagccg gtgtacgtgg tacaacagga gcagagtggg 4980 aagaagagag tcctccaccg caacatccta ctgccctatc gagcggagcg ggcaggcccc 5040 gaacccagaa agcaacacgg gcggaaagat cccccgcgca gacagcagga ggacgacacg 5100 gaaagctctg ctagcgactc agatagctcc tggtcggact tcgtcgcgac tgagctcaat 5160 ccgttagcgg ttccgtttac catggatgca gaaggtgaag agccggaggt gcacattcaa 5220 caagaatatg acaatgatgt tcaggagtca gagtcaggag gggaagcagc tgagaagcgt 5280 cctgacagac ttcggccgag gagggtagtg agacctcctg ctcgcctcat ttgcgaccca 5340 gtgtggtcac agcaagtatc gacactgaac tatggtatca caattttgcc atagcaaaaa 5400 aaaggaagaa aaaaatgaca caagttttgt tttattgact ctagacgccc ttcctcatca 5460 ggggggagaa 5470 // ID DNA-7-22_NV repbase; DNA; NEM; 530 BP. XX AC . XX DT 11-MAR-2011 (Rel. 16.03, Created) DT 11-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-22_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP22; DNA-7-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-530 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-530 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-530 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-22_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (11-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~92% identical to the consensus. It was reported CC originally as the unclassified NVREP22 transposable element CC [1,2]. XX SQ Sequence 530 BP; 150 A; 128 C; 101 G; 150 T; 1 other; cacgggcaaa ccagacgaaa tgttcgtgta tcgaatatta tctttaattt gtttaccgaa 60 tatatctgta ataaagccaa tttcttgaag ttgttgtcat agattgatct ggttccgttt 120 tagccgtgat tcataacagt ttaggcgatt ttcctccctc atctcggttc acctcctccc 180 cactcgtaat aaaatacaac agggtaggaa gctccacgcc ctggcaatca caacttcgac 240 tcttcgaggc aactttttcg gcagaaaacg gacagctttt cccttcaaaa tcctatatgc 300 catagaagaa tagtttctaa acacatcttt cgaagaaaat aatccaaaag accagaattt 360 ccctgcaatt tttcgctgca aagtcgaaat ttatcgttct tccagggtgc tgacaaacgg 420 tcggtccact gagcgcggtc ggggcctgga cacaatagaa aatacaatgc aatgccgtgg 480 caaccgctga tamcattcga tacacgaaca tttcgtctgg tttgcccgtg 530 // ID DNA-3-8_NV repbase; DNA; NEM; 3016 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-3-8_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 3-bp TSD; KW NVREP45; DNA-3-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3016 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3016 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3016 RA Kapitonov V. and Jurka J.; RT "A family of DNA-3-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this transposon was reported as the NVREP45 CC unclassified DNA transposon [1,2]. XX SQ Sequence 3016 BP; 866 A; 584 C; 624 G; 942 T; 0 other; cagtctacgg actgagtgtg aattaatgag ttttcacacc cgggccatgc atttaatgag 60 gtctgggcca cgaagcgtag cgagcaacgg gtttacaacg gttttagggg aatttttcac 120 tgaaatgatt atcaatcgtt tggataacga tatgatattt tacatcgtgt ttaacttata 180 tcctggtgca agaatcatgt gaaaaaagcg gcgcttttct cgagaaattc acgcgactag 240 ctaacagaac agtgcattcg agaatggcgc cgaaaacgga accatggaca cgtcaagtgg 300 taatggcgaa tgagctgctt ctctgagtta cagtcactga tttccagata aaaggtaaag 360 tttattttag aagtgttatg cctcattggt aagtatatgc gattgcttcc actgtttgta 420 gattgtgagt tgtaaggcct ttttgaagac agaacccgta tttggtgtcg agttatgatt 480 cgaaattctt gttgacattg cattaaacct tgcctttata tatctaggtg attaccttgc 540 ctagtctcgt gaaaacttat cggttttaca tgtttgtgtt ttaatcaagg aatttgagaa 600 tgttaaagtc aaaggaaggc gcgtctatct actgatgttt tagtagcagc aacaacgaat 660 tgccgccatt acgtctttgt tatcaaacac tatttttcac tccctaagtt ttctctattt 720 ctgattctta ttgataaaat aacctgattt ggagaacgta tttgagttag cgcttacatt 780 atcggtgagc tatcttagat cggcgtattt ttgttaaaat agggcttaga gcctcaagtc 840 taattctgat gtgcaggtta tagtgtatgc atagtgtata aaacctatag gagtttatta 900 caaaagtaat tgtgaattac tcacgacagt cttccgaaat ccgctctatg agacaataaa 960 tgtacttact tgcggtcttt ctatacctaa taagtaacga ttttcaggca caatatataa 1020 tttattgtac attatgaaaa tggggacctg ttttgtttcc ccaactagca ctcgtgtaaa 1080 agaattactt tgcttggtta cacaaataat atacttacat atgattgaag caataaaaat 1140 gaaaagaaat atatcctttc atgtaaatct atttcaggtg aataccttat tcgccaaact 1200 caaaatctag gtaaaatcac gataacaccc ttggcaaatg cagcgttctc ctgtgatacc 1260 ctgtgttacg cccaaataac tcatgtattg attaaagttg tctatctcct caacaggggg 1320 tatgcctcgt tggaccctgg tgttcggcaa gagtacggtc ctctccacct gttgcctccc 1380 acacacagca tgtcgtgcag atgtggctgt gtttagtagg acggcctctg gaattttttt 1440 tttgccgtat ctagtccgct gagcgcggaa cccgctttcc ttttcctcaa ggtagcgcca 1500 gaactaccgg caggcgaaat tgaaagccac gtcactcaaa accagtgcaa tatccaggcc 1560 cgtacccagg atttttctta gggggggtgc gaaatccgaa acccgggggg gggggggggg 1620 gagggaggaa gttttctgat aaaatctgac cacccccgaa agaacaaaaa gggtttttta 1680 tgcctttgca gtgtccacgg gacttttatt gtcggtttag ctacaaataa agtctgactt 1740 tggattaatg acataccaga tggatctagc ttatgcttta tagttttgtc tacgaatagc 1800 acgtctattg agaaccgaaa gtagactttc ggccgttgtg cccctgggta tgggcctgat 1860 atcagctttg tttagtgaca tagattatga gaataaaatt tgcatactaa attatgaaaa 1920 gagtcggttt acttaaacaa gaaattctac cccaagaacc ggtttaacag tcttatcgta 1980 agccaaagta atatttaagt ttgttcgcga tctcatcttt ttacggaaga gggtattaga 2040 aacggaaaga aaccgcgtta ccatttagtt tcttgcgtga ctaagcatgc atggaatgtt 2100 acaagctggt ggttttccct attcagccgc taaacacgag tgagcacact tagaataatt 2160 tccggcgaaa gcaaccaaac aacgtgggtt tgaatttcgt gtctcgtttg gcgaagggca 2220 aaccgaccaa gtttctactt cgtatataaa tagataagta actaaagaac actagcgata 2280 catgatctct tatttgctgg cttatgacat agtgcacaaa aaatattttt atacgcgagc 2340 acaaactacc accataggac atgtttagca ctttcgaaca ttactttatt ctgccgagcc 2400 ctcctgacat actgacgtta ggcacatatt tttgaagtat tactttacaa atgcctcata 2460 caaacttctt aataatattc tatcgtttcc tggatattcg agcttaaagt cgtaagttaa 2520 caggtgctcg gagctactga atacagcttg tgtcaaatat tcatttgttg tatctcggta 2580 ttgcgttctt ttgtctccaa aatttcctga cttcgagggg aatgattgta gaggcgccag 2640 ggaaagtttc atttcgttac ttggcttatg acatagttgc ccaaaaattc gaaagtttag 2700 aaagtcgcca gaaacgtacc agaaacatag cttcgtaaaa acggtagaat gcatcacttt 2760 aatgttgttt ctacaaattc taattactag cacattattg taagactctt tcttgaagtg 2820 gcaacaattt ttttttgctt ttcaaagtgc gctgccaaac gtctaggtac taatatttct 2880 gaagagttat ttgcctcaaa tttcccgccg ttgttattag gtgaaagcgt cggcccgttg 2940 cctagcaaaa cagcacctca ttaaatgcat ggcccgggtg tgaaaactca ttaattcaca 3000 ctcagtccgt agactg 3016 // ID DNA-5-11_NV repbase; DNA; NEM; 268 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-11_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-268 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-268 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-268 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-11_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 268 BP; 70 A; 62 C; 65 G; 71 T; 0 other; caggggcgga tccaggattt caaaataggg ggtggataat ggccggatag acggcttgta 60 actgatccag tggttcttgg taggtcacat agatctaaca atacttcaag ctgaattgaa 120 tttgtcgcgt cagcaaagtc aagcaggcga tggcacatgg acagtacctt ctccgtagtt 180 tcttcaaaca aagtgacttt tcaatttttt tttgctcaaa aaggggggtg gatatccacc 240 caatccaccc cccctgtatc cgcccctg 268 // ID Gypsy-22-LTR_NV repbase; DNA; NEM; 160 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-22_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22-I_NV; KW Gypsy-22-LTR_NV; Gypsy-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-160 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-160 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-22_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 476-476 (2007). XX DR [2] (Consensus) XX SQ Sequence 160 BP; 44 A; 25 C; 43 G; 48 T; 0 other; tgtcatatac tgaccgggat acctgtgtca ggaagtagac cgctgtaaat agtgtaggct 60 caggtgacac acatgttctg aggcgaacgg cctgtcaagt tgttgttggt ttattatgga 120 aagttcgtgt gctaattaaa ggataaccaa ggttattata 160 // ID Sola3-1_NV repbase; DNA; NEM; 5079 BP. XX AC . XX DT 28-JAN-2009 (Rel. 14.02, Created) DT 28-JAN-2009 (Rel. 14.02, Last updated, Version 1) XX DE Sola3 DNA transposons from Nematostella vectensis. XX KW Sola; DNA transposon; Transposable Element; Sola3; TTAA TSD; KW Sola3-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5079 RA Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.; RT "New superfamilies of eukaryotic DNA transposons and their RT internal divisions."; RL Molecular Biology and Evolution 26(5), 983-993 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(2018..2371,2287..2595,2568..4154) FT /product="Sola3-1_NV_1p" FT /translation="LSLGLVYFAKQLELIFYRNRTRHKQYAEPRLSFLGTP FT KAARDTETDWTPGEWKDSHEDDDDVNVSIYNDAMNKLSEVSGLPFQPVTSR FT LENNLATCSRVKRMKLQRKLILVVVWYAKCKQPGNLQQSEKDEITEKADIG FT CRLVCKMLAPKAGADLFDTVCQQGRDEALSEELDTLMSAYRDAPSRNVKTQ FT ILSLYVYRFPAEKLMKLHEPYETMCHTEHVYDDVSYGTRVLKLDSGQSITM FT PNFVRTVTRSTMISQLPVAKSCILDWKVNILRAVNQEKAKQDLLKSMEVDK FT EALIVMDWAMKFNPKKFREKQSEWFGKRGISWHISSGIIKTTQEINVTTYA FT HLFDSCTQDWFPVLSIVENIKERVKESNTSLRTVYLRSYEAGCYHNNNLVA FT ALSDLEKRTGVCVRRLDHSEPQHGKYICDRILCPMKASLKTYCNEGHDVAH FT ANDMHTALSERPVKGTTAAVCQMDESRKSIDVKKITGFSKYHNFAYEEEEL FT RMWRCYGIGPGKLLAYKRLLKKGQENTELHCLKPFFDIKELRGLKPSRAAS FT RKEQPLFACPEPGCRETFVMFADLELHLDVGNHTAETTSTTYDVIRKTWAN FT RCLTVYQEAMVSTFTGAGTAAQPFTGTTGEPEGWALHKGRGGSALFPPIVK FT EFLIRKFELGEKTGRKSNPEQVAIEMRCLKSTNGTRQFTREQWLAKQQIQG FT FFSRLAYTKRKGNNEQIEEDEVAKESEKRERQRESDELFLLIGLDRNTK*" XX SQ Sequence 5079 BP; 1561 A; 1060 C; 1134 G; 1324 T; 0 other; gaggctgtcc gtctaagaaa cgaccggtca attttcggct atcgaaataa tgggtcaatt 60 aattcaaaat atgacagaac tacctcaatt atttgtgaaa aaacatttaa ttcacttttt 120 tttcgatgcg tactacaaaa ttcgagattc aaaatccacg ccctcgaatg agcgctcaaa 180 catgagcaag atcgccgtct ccatagatga gtctcacatt tgattcgcga catcaacaaa 240 taaaaaatct atttcaactc aaagacaaat gcccaaagaa gccatctgag tggaaaaata 300 atgaaaagta acagaaaatt tgaatattct ctcgccttag tgatcaaagt tcgaatctct 360 gtcaaaagca tgtaacacat ttataatcaa aattctcaaa agtgcaccac aatacgagag 420 aggcactcag cattctcaaa acataagtag tttgtcttgg ccttttgtga aaagaaacat 480 ttttgccgtt gcgaatttac tccaagaatc attccaaaag gttacaggtt tgacctccaa 540 attcttgtca tcttggacgg ccgctgtcaa tctcaaccga tatgtttcaa atagcggcgc 600 ggaaattccc acgataacgt agctaaatac gcatccaggg ccatttgaag cgagacatac 660 cagatatctg tattcgaaat cgtcgaagtt tccttacttg gtgacttctt tgcagatttg 720 tgttgccatt gattgaagta gatcgcgtga cattcggctg gttgtttaca attcttgtgt 780 ttcaacgcgc cacaatgaac tctacaccct tacgagctcg agtcgaacta aatagatttg 840 attatcacta tccctatttc tttgaaaaga aaaagggttt aacacagtct aacatttctg 900 ttgtacgcgg tgaacttgaa atgtagctaa tgtcacgctt ttgctatgtc gtaataccgc 960 tgacaagggc gtttttgccg ttcgcaagaa atagcagtaa cattcttcgt tatggcgagc 1020 tgttttctca agaatggtca ttctattgac tgcggccctt cgcaaggacg gacagagctg 1080 gtgaagctag ccgattgtaa agatgatatc agcgctcata tgcggaaatg tcatctctcc 1140 cgtgcaaata tgttcgaata ccaggttata ttgcagcgag cggggcttgg acatctttcc 1200 caagacacaa tcatcaattt cagagtgtgc ccccgacatc ggcacgagct aggtaagtac 1260 tggaggtcta agagaacgtg tcaacacccc ctgcactcta cttcctctaa acacgtgaaa 1320 ggccctaacg tgattgaggt gaaaatggca ggcgaaatct tcgatgcaat tggtacgcct 1380 actggatcct gtaagttttt tgaatcaaga aaaaaaaaga acaggacaaa catccctgca 1440 aacatttaac ctacagaaga tgagcgctcg aatgcccaga cccccccccc gtccacccac 1500 acacgccctt aaaaaaacac attgggcgtg ggcgcgcaat ataaagacaa tatctgatcg 1560 catgcttgat ataacgtttg cagataacct tgttgtagat agggtatgtt aattcagagg 1620 ggccttttgt tactccccag taaggagggg gggttgtgcg cgcacccaac cttgtacatg 1680 tcatgcaccc agtgccccca cctcgccacc tatatgcaaa taacgcttta ttaattgaga 1740 taaacacgac ataaatcctg tttcctggta catttttgta aaactactgt attataccaa 1800 tttagctgta tgcactggct gtatcaaaaa gcacaacgca acgatcaaga ccacgcaaaa 1860 tgatgccgat cttgaagctg actctctgcg agatacgctg gggaacatgt ctttgtcagg 1920 gaatgagcga ctgttaaggt acatatggct gagtattctg ttcagtagtt tcacagattg 1980 cacatagtat tttgaataat tggaatgtat aagatagcta agcttgggac tagtttattt 2040 tgctaagcaa ttagagttga tcttttatag gaacaggacc agacacaagc agtacgccga 2100 gccacgccta agctttctcg gtacccctaa ggccgctaga gataccgaga cggactggac 2160 accgggcgag tggaaagaca gtcacgaaga cgatgacgac gtaaatgtgt ctatttacaa 2220 tgatgccatg aacaagttga gcgaagtgtc aggactaccc tttcaaccag tgacatcaag 2280 gcttgaaaac aacctggcaa cttgcagcag agtgaaaagg atgaaattac agagaaagct 2340 gatattggtt gtcgtttggt atgcaaaatg ctagcgccaa aagcaggagc tgaccttttt 2400 gacacagttt gtcagcaagg tagagacgaa gcactgagtg aggagctaga tacgcttatg 2460 tctgcataca gagatgcgcc ttcccgtaac gtgaagacgc agatcctaag tctatatgtt 2520 tacagatttc ccgccgaaaa gcttatgaag ctacacgagc catatgagac gatgtgtcat 2580 acggaacacg tgtattgaaa ttggactctg gtcaaagtat caccatgcct aacttcgtaa 2640 gaactgttac aagatctact atgattagcc agttgcctgt tgctaaatct tgcattttgg 2700 attggaaagt gaatatcctc agggcagtta accaagagaa agccaaacaa gaccttttga 2760 aaagcatgga agtggacaag gaggccttga tagtcatgga ctgggccatg aaatttaacc 2820 caaagaagtt tcgcgaaaag cagtccgagt ggtttggcaa aagaggaatt agctggcaca 2880 tctcaagcgg gatcatcaag acgacgcagg aaatcaatgt gacaacctac gcacacctgt 2940 ttgactcttg cactcaggat tggtttcccg tcttatcaat agtggaaaac atcaaagaaa 3000 gagtaaaaga aagtaacaca tccttgagaa ccgtgtactt gcgctcatat gaagctggct 3060 gctaccataa caacaacttg gtggcagcct tgagtgatct cgagaagcgc actggagtct 3120 gtgtaagacg actagaccat tcggagccac agcacggcaa atatatttgt gacaggattt 3180 tgtgcccgat gaaggcttcc ttaaagacct actgcaacga aggacacgat gtggcacacg 3240 ccaatgatat gcacacagcg ctgtcggaaa ggcccgtcaa aggcacaact gctgctgttt 3300 gtcaaatgga tgaaagcaga aagtctattg atgtgaagaa gattacgggc ttcagcaagt 3360 atcataactt tgcgtacgag gaagaggaat tgcgcatgtg gcgctgctat ggaataggcc 3420 ctgggaaact gttggcatac aagcgactcc ttaaaaaagg ccaggagaac actgagctcc 3480 actgcctaaa accgttcttt gacattaaag agttgcgagg tttgaagcca tcccgtgcgg 3540 cttcacgaaa agaacagcct ttatttgcat gtccagagcc aggatgccgg gagacgttcg 3600 tgatgttcgc tgacctggaa ttgcacctcg atgtagggaa ccacactgct gagacgacat 3660 caaccacgta tgacgtcatt cgaaaaacat gggcgaatag atgtctaaca gtctaccagg 3720 aagcaatggt gtctacattc accggcgcag gaacagcagc ccaacctttc acaggtacga 3780 cgggcgagcc tgaaggatgg gcgctacaca agggacgggg cgggagcgca ctatttccac 3840 ctattgtaaa agaatttctt ataagaaagt tcgaactggg agaaaaaacc ggaagaaaga 3900 gcaaccctga gcaagtggct atagaaatgc ggtgcctgaa atcaacaaac ggtacacggc 3960 agtttacgcg cgaacaatgg ctcgccaagc aacaaattca gggtttcttc tcacgtctcg 4020 cgtatactaa gaggaagggc aacaatgagc agattgaaga ggatgaagtg gcaaaggaaa 4080 gtgagaagag ggaacgacag cgagagtcgg atgagctgtt cctgctgatc ggcctagata 4140 ggaacacgaa gtgaaggtga aaggtccaat tgaatattgc tcttgagtta catattgtgt 4200 ttatcttata ataaaaaaaa acaatcaaac aagataacaa acaaacaaag aaataaagca 4260 ataaatcctc ccgcacttac ccgtctcttc tatatatata tatatatgta aacaaccagc 4320 cgaatgtcac gcgatctatt tcaatggcaa caaatcttca aagaagtcac caagtacgga 4380 aacttcgaag atcgagtaca gatatttggt gcgaatccaa tgtctcgctt caaatggcct 4440 tggatgcttg tttagctcaa gttattgttg gaatttttgc gccgctattt gaaacatatc 4500 gtttgggatt gacagcggcc gtccaagatg acaagaattt ggaggtcaaa cctgtaacct 4560 tttggaatga ttcttggagt aaattcgcaa cggcaaaaat gtttcttttc acaaaaggcc 4620 aagacaaact acttatgttt tgagaatgct gagtgcctct ctcgtattgt ggtgcacttt 4680 tgagaatttt gattataaat gtgttacatg tttttgacag agtttcgaac ttcgatcact 4740 aaggcgtgag aatattcaaa ttttctgtta attttcatta ttttttcatc tagatggctt 4800 ctttgggcat ttttctttgt gctgaaatag attttttatt tgttgatgtc gcgaatcaaa 4860 tgtgagactc atctatggag acggcgattt ttgctcctgt tttgagcgct cattcgaggg 4920 cttggatttt gaatctcaaa ttttgtagta cgcatcgaaa aaagtgaatt aaatgttttt 4980 ttcactaata attgaggtag ttctgtcata tttttaacaa attgacccat tatttcgata 5040 gccgaaaatt gaccggtcgt ttcttagacg gacagcctc 5079 // ID DNA-TA-26_NV repbase; DNA; NEM; 248 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TA-26_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW DNA-TA-26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-248 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-26_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [1] (Consensus) XX CC Copies are 84-98% identical to the consensus. This transposon CC forms a palindrome. XX SQ Sequence 248 BP; 63 A; 60 C; 62 G; 63 T; 0 other; cagtcgtttg acaaaaggtt gtcatcaacc ggctttgcga ctacgcgaca agcccgcatg 60 taagcatggg taaaaaccac tgaagcgcct agctgcatat attagccact gcataacttc 120 agacttagac ggtgtagcgg tggctaatat atgcagctag gcgcttcagt ggtttttacc 180 catgcttaca tgcgggcttg tcgcgtagtc gcaaagccgg ttgatgacaa ccttttgtca 240 aacgactg 248 // ID LTR-7_NV repbase; DNA; NEM; 363 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR-7_NV solo LTR of an unknown LTR retrotransposon - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR; nonautonomous; KW 5-bp TSD; NVREP246; LTR-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-359 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-359 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-363 RA Kapitonov V. and Jurka J.; RT "A family of LTR-7_NV solo LTRs from the starlet sea anemone RT genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~90% identical to the consensus. It was reported CC originally as the unclassified NVREP246 transposable element CC [1,2]. XX SQ Sequence 363 BP; 113 A; 70 C; 61 G; 118 T; 1 other; tgttggaaaa tcactctatg cgaactctcc agaactatac gatacggact aataacagtg 60 actcataatg actcagcatg atttagtatc aatctagata tttccagaat agaatcatgt 120 attattcata tactatattt gtaaattacc tcaggcgtaa tcgatctatt tttaggaaca 180 mtgatgtaat gtttacttct agaacattcc gtgacatgta tataagcagc tcgatcgctg 240 agatcctcac ttgtgttttc gacctggttc aactgctctt gtgtaaaagg caccactgct 300 ggttaaagat tgatttgaag aatcaagacg tcttcatctc cgttcagaga aacattttca 360 aca 363 // ID Mariner-N7_NV repbase; DNA; NEM; 381 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Mariner-N7_NV non-autonomous DNA transposon - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW pogo; TA TSD; NVREP291; Mariner-N7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-381 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-381 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-381 RA Kapitonov V. and Jurka J.; RT "A family of Mariner-N7_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC This non-autonomous transposon codes for remnants of the Pogo CC transposase. Copies are 80-93% identical to the consensus. It was CC reported originally as the unclassified NVREP291 DNA transposon CC [1,2]. XX SQ Sequence 381 BP; 105 A; 74 C; 76 G; 126 T; 0 other; ccgtatttac ccgcgtataa gccacacttt tttcactcca aaatgacctt caaaattagg 60 gtgcgtctta tacgcggaat gccacttttt ataatttgga tggaacaaag ttgaagccaa 120 tggtgatttt caaacgtaag acgatgccaa agataaagga cagtcacggc gttgttcttc 180 acggaaacac tttggtttta gttctattga atcgttcact aaccaacggc aaatttgctt 240 tttgcagcat ttctttctgg aattgctgta gcacgcaatg caagttttaa acatttgaat 300 attgatcttt tttactattt tgagctcaaa attctgggtg cgtcttatac gcgggtgcgt 360 cttatacgcg ggtaaataca g 381 // ID DNA-5-5_NV repbase; DNA; NEM; 2005 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-5_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2005 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2005 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2005 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 2005 BP; 606 A; 371 C; 456 G; 572 T; 0 other; cagggttcgt acaagtcctt gaaaaccttg aaagtgcttg aattttaaaa tttgaaattc 60 aaggtttgga aagtgcttga attcttatta tcagtccttg aaagtccttg aaaaatatct 120 gattttaaag aaacaaaagt aaagcttatg gaatgtggat taatcgcaaa ttgtagccaa 180 atatatcgtt tgcgagctat tgctttatat aattttggcc gcagttctgt aatttaggct 240 acctgtattt tttacgggag aaccagtggt agcaggtgtt tggccttgtt aatgatgtca 300 agtcttggtg agagcagaaa tatactgagg tgaaatgtag actttgcata aagacattca 360 atatccagag catgggcatt tcggcataga agatacggat gtacaagata aagtatgtat 420 aatccatgcc caaaaacaag atcagcatag atcattagca gattgtacag tgaaaggaag 480 tatgcttcgc caagttcaag ctctttgctg atggtaatgg tgggcttaca agaaagatga 540 gagattgtga tctcctggtg ctcccgtaca cagaatttgt ggagaaagct gagcaagccc 600 agaagacgat cttcttggat tttaactaca agagaggtgg cgaataatgg tccctagata 660 tattgatttt ctctccaaat ttcaaggcat ctcgatttct cggattttag agatttgact 720 tctcgttctg gttctcgaga aatgcaagat ctcgttttct ctgatttaaa aaaaagccta 780 cttgtcatct cggaactatt tctcagattg accattcgcc acaagctaaa caggctgggt 840 gcgtccttct tacagcatct agcctggaag agttgtgctc tggaagttta agatgctgtt 900 gacacttttt catggtcagg caagagtcga aagagacttc tctgtaaatt tcagttgaaa 960 acgtgcgctt gctaactgct aggtgcggca agtcaaggga ggaaacatta cacccaatgt 1020 catgaagact aggggagggc caaggaggag attgtttgaa gccgtaagcg aaaatggcaa 1080 gaagagctag agaacaagtg gaagtgaaac tgtattccaa aattaacgtc accactaggg 1140 acggtaattt cagttaatgg agccggagcc aggctcaaag gtcactcata aatcatatcg 1200 tacgggtacg cgtatcatgc tacaatagca caggtatgac tcaatatgtt tcacgttaga 1260 tacctcacta taaacgctct taattcttat tggtcgctat ctacctatat aaagtgccac 1320 acctaaagta aagtcattcg ctctttcgct taataagcta ggagtactgt aaagaaacat 1380 ttgaaaatcg gttaaatatg cctaaacgtt tgcgtttgtc tggaggagac gagttctctc 1440 taccgatgtg cttggtcttc gactacaagc cctcaaccgc ccctccggtg gaatgcggca 1500 gcaacaaata gatcgcctca ggcaagccac tcaaggcggt gaggaggctt caccctcagc 1560 cctgaggtgt gcttgtgcgt tggtggacca gccaatactc tcgtccgatc cttcacgcgg 1620 agtgtagggg agatgagtga ggccttaagg tcatatgctt acactacagt tgctaaggag 1680 aagcaaaagg ctttgaaaga agaaagtttt gaacgtttga gaatctcaca aaaagttgaa 1740 aatctgtagg cgaacgtttg cttgaaatca ccgtttaata acagttgctc accagtgagt 1800 aatgatgctt gtgtatgttt caaagagtcc aatcgtcgtc tattttcgta ttgaaaatag 1860 accatgtaca attgataaaa gctctggtaa aacttggaaa agtactttgc cctatattga 1920 attttccttg aatttctaca aaaagtcctt gaaaaagtcc ttaaaagtcc ttgaatttga 1980 ttggtggaaa attgtacgaa ccctg 2005 // ID piggyBac-N5_NV repbase; DNA; NEM; 1568 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE piggyBac-N5_NV non-autonomous DNA transposon - consensus. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP402; piggyBac-N5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1568 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1568 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1568 RA Kapitonov V. and Jurka J.; RT "A family of piggyBac-N5_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Codes for remnants of the piggyBac TPase. XX SQ Sequence 1568 BP; 468 A; 316 C; 356 G; 428 T; 0 other; ccctttcagg ccggtgaacg tcaaatgacg tgttgcgtta catagcgtta tcttacggtg 60 aacgtcattt gacgttttcc ctagtgacct tcaaaaactg accaataact ctttaccact 120 tccttatatg ggaatgccat gtgcttcagt agatagagcg tgaaatttca cacaactttc 180 ttatacaact tgcgatcatt cgaacaatat ctactgcgat aaatcaccgt tttttacact 240 gttttgaact ccattttgac caaatggatt catggtttga agatatcttc ggagagtccg 300 atgatgaaga gtttgagggc tttgaaagcc aagaaattgg cggttcaagc tcggatagct 360 cttccgaaga cgaaggccac gagagcgaag acattgaaga cgagatttgt cgagaaattc 420 ttcgccgatc tctattcctg acttcactcc tagatgcggc ccgaaaaacc tacctggaaa 480 cttgtctccc ctatctttct ttgagttgtt tttcaactca gaggtgatag aactcattgt 540 gaccgagact aataagtatg cggttcaatg caacactgac gagtttgacg aagaaggaag 600 gaagaaagct aaggacgcga attggttcga caaagaggga aacatcaaac ctctaacagt 660 cgaagaactg aaggcgtttc tcggcatcac catcatgatg ggcattgttg acctcagcga 720 tcagcatcgc tcatactata cggtatcctc gagacgacat gtgaaatggt ggaaatattt 780 attttatttt tacatggaca tctcaataat caacgcatgg cagctccatg gccagagtgc 840 tgaagcgaaa cttactaact tcgagtttag acttgcactc gcgaagagcc tcattggaac 900 ttacgaggga agacagcgag ccggacgtcc gcgcgttctc ccggttatcg cggatgtcga 960 gcacttttcg gagaaattgg cagacaaggc gaaagcctgt aaaaactgcc aatctaagaa 1020 caagcgccta aaagctggaa ataaggcagt gaaacgtgca aaggaaacgc gaaacgggtg 1080 ccgaaagtgc gatgttcact tgtgcgtggg agactgcttt cgtgaatggc accagcagcg 1140 cagagacgac aacaaataaa ctgaaatacg gacattcccc tgcttgagga aaggacagca 1200 ataacattag agcttagttt aatactccat gccactgaat tctagtttct atagctttct 1260 gtttaggtat agtaaattgt tctcttgaca aagactgtac aataggtgga ttagtggcgg 1320 gaaattcaaa aacatgattt tcattgcttt gtaattctct taaaccaagc ttgtttgacc 1380 ccattttagg cttaaaagaa tacttattat atggggagta agcaatttct atattgttag 1440 ctacaataat cagtagtttc cttacaataa agcaatgttt gaaggtgact ataacttgag 1500 ttgtgtgagg ttaattaatt caggacaggg ggtcatttgt cagttctgga aacttaggcc 1560 tgaaaggg 1568 // ID DNA-X-4A_NV repbase; DNA; NEM; 588 BP. XX AC . XX DT 23-FEB-2011 (Rel. 16.02, Created) DT 23-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-X-4A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; nonautonomous; NVREP135; KW DNA-X-4A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-588 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-588 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-588 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-4A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Target site duplications are not clear: their size varies from 3- CC to 8-bp .Copies of this transposon contains minisatellites and CC form long inverted repeats. Originally, it was reorted as the CC NVREP135 unclassified DNA transposon [1,2]. XX SQ Sequence 588 BP; 199 A; 66 C; 106 G; 216 T; 1 other; tgttacgctg caaaatgtaa taatcaacac aaaatgtaat cttaacgcaa aatgtaataa 60 ctcaacgcaa aatgtaatct taacgcgaaa tgtaataact ttcaacgcaa aatgtaataa 120 atgtttaacg cgaaatgtaa taacttttca acgcaaaatg taataaaata tttaacgcga 180 aatgtaataa ctttatctat tgactaatag ttaaaagttc tactaatatt aggaaaaaga 240 tgaaatgtta acacgtagag acaaacggaa ggatcgttta gtgaaagaaa ggcagtgcga 300 cttgaaagtg cattgttctt gccttttttc ttagtatagc ttttagttat ggtttatagt 360 tattatttga tgttataaca tttatgggcg acgtgttatt acatttatgg ttaacgtggt 420 ttataacatt tatgggcgac gtgttmttac atttatggtt gactgtttat tacatttatg 480 ggcgatgtgt tattacattt atggttgtta taacatttat gggtgactgt tattacattt 540 atggttgtta taacatttat gggtgttatt acatttatgg gtgataca 588 // ID DNA-7-18_NV repbase; DNA; NEM; 255 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-7-18_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP289; DNA-7-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-255 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-255 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-255 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-18_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 88-95% identical to the consensus. It was reported CC originally as the unclassified NVREP289 DNA transposon [1,2]. XX SQ Sequence 255 BP; 87 A; 40 C; 40 G; 88 T; 0 other; cacaggctta ccatcctccc gttgttatca tcagaattat ttcccgtaaa taatctatta 60 caaaataaag gtcgaatgaa atctcataaa gttgtctttg atgtcaataa atcgtaaaaa 120 aataagattt cgattttttt tcgatttatt gacatcaaag acaactttat gagatttcat 180 tcgaccttta ttttgtaata gatcatttac gggaaataat tctgatgata acaacgggag 240 gatggtaagc ctgtg 255 // ID DNA-7-21_NV repbase; DNA; NEM; 1021 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-21_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP154; DNA-7-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 561-1021 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 561-1021 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1021 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-17_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~92% identical to the consensus. It was reported CC originally as the unclassified NVREP154 transposable element CC [1,2]. XX SQ Sequence 1021 BP; 280 A; 213 C; 231 G; 296 T; 1 other; cacaggtagc ccaagctctt tatttgtccc tattgatatt tacggtaaac atagggcgaa 60 aaacaaaatt agtgaaaaat aaaaaacaac ttgttgaaaa gacgtgtgta gtctagtgtt 120 gtgtttatgt ttactttttg cgtgttcttt ggccgtatta aagcgccttt ttcaagattc 180 aagattcacg atttgaaatt ttccgaacaa agcgaagagg aatccggcag aawattcatc 240 tttttgtcgt cgtatatgct tgccaacaat gaatttggca accgtcaaaa ttgcctcgtc 300 cccgcagcgc aaaacatccc gtgcacctgt ggctgcggag attaaagagg tccctcctgg 360 gaggagctcg aaattgtgca tttgcacgac cctgagttag tcctagaaaa gttttcttgc 420 cgtgctagaa aaactttgct aggactaatt tcccccggca ggggaatcgt gtgcagaatt 480 tgcgcactaa tttcgacgct ccctcccacg gcagggacct ctttggctct tgccaaatcc 540 acgcatgtac atgattttgc gctcgcgggg acgaggcaat tttgacggtt gccaaattca 600 ttgtggtcaa gcatattacg acgacaaaaa gacgaatatt ctgccggatt cctctgcaat 660 ggaaaatcgt gtggcgctga ggtttgggct ggttggactc caactatctg tgaggatgtc 720 gccgtgattt gagcgcgatt aagcgggagg aagtgtgttt ttgaggacgg aacgtgaggt 780 atgtccaaaa ttactttcct acctttcact tcgttctggt aagagttcaa atcgtgaatc 840 ttgaatcttg aaaaaggcgc tttaatacgg ccagagaaca cgcaaaaagt aaacataaac 900 acaacactag actacacacg tcttttcaac aagttgtttt ttatttttca ctaattttgt 960 tttcgcccta tgtttaccgt aaatatcaat agggacaaat aaagagcttg ggctacctgt 1020 g 1021 // ID Harbinger-N12_NV repbase; DNA; NEM; 912 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP183; Harbinger-N12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-912 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 171-171 (2007). XX DR [1] (Consensus) XX CC Harbinger-N12_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N12_NV CC transposon is characterized by 31-bp TIRs and 3-bp target site CC duplications. XX SQ Sequence 912 BP; 277 A; 139 C; 218 G; 278 T; 0 other; gggagtgttc attatttatg gccgaggggg ggtcggttcc cacatagggg gggggggcta 60 aaaaagtttt gggtacgtcg atggggggtc ataaaagttt caatgtggtt gaaggggggg 120 ggggggaaaa agtttcatcc cttaaaagta ggaaactttt tttatttatt attattgaaa 180 tgagtaatca aaatgcaaga aaagctgttt cctagcgttg ccaataacat atttaggcta 240 catttactgc tgttgagccg tgaacgcttt cccacaaatg acaaattcaa caatgtttat 300 tactcggtag tagttcattt aagcttgacc tataggatca ataaaaaaca acaactgaaa 360 tatatgcatt tgtaaaatat actaggaatc tagtacggca ggttattaga taatgtcaat 420 gtgtaaaaaa gtctgactcg gatacctttg ctttggacac ccccgcgagt accagatctg 480 ggagatctat cagaccaagg gcacaggacg attttatctt ttattaggac agtcccatgc 540 agtaaaatat aaaattgtcc tgcgtgatat ggactagtga tatggcatgc aaagatagat 600 ataggtatag atacatattc tttactgttt caaaacgcca caaggccaca tttgacttat 660 tacaataaga aatattattt cttggttgtt ttttattgca tgatttgttt atatgtatct 720 atatttcgta ttataaatgt agttttgtgg atttttaaag agaaggaggg gggggggtca 780 aacaagtttt tgggtttctc ctgggggggt caacaaagtt ttgatgttga caaagggggg 840 ggttgtacag aaaactcaag tggagtggcg ctgaataccg acccccctcg gccataaata 900 atgaacactc cc 912 // ID IS4EU-1_NV repbase; DNA; NEM; 6387 BP. XX AC . XX DT 29-APR-2007 (Rel. 12.04, Created) DT 01-MAY-2007 (Rel. 12.04, Last updated, Version 1) XX DE A family of autonomous IS4EU transposons - a consensus. XX KW ISL2EU; DNA transposon; Transposable Element; IS4EU; KW Interspersed repeat; IS4EU-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6387 RA Kapitonov V.V. and Jurka J.; RT "IS4EU, a novel superfamily of eukaryotic DNA transposons."; RL Repbase Reports 7(4), 145-145 (2007). XX DR [1] (Consensus) XX CC DNA transposons from the IS4EU superfamily are characterized by CC the TA target site duplications. These transposons are wide CC spread in metazoans, including fish, frogs, lancelet, sea CC urchins, sea squirts, insects and cnidarians. Autonomous IS4EU CC transposons encode two proteins: the IS4EU-TR transposase, which CC is similar to the IS4-like bacterial transposases, and the CC ISEU-EX DNA exonuclease (lambda-like exonuclease). Based on the CC conservation of both proteins in highly divergent transposons, is CC is clear that they are necessary for transpositions. CC IS4EU-1_NV is a consensus sequence of a very young family of CC autonomous IS4EU transposons that were active in the starlet sea CC anemone genome in a last few million years. The IS4EU-1_NV CC transposon is characterized by 14-bp imperfect terminal inverted CC repeats, TA target site duplications, and it encodes two CC proteins: (i) the 538-aa transposase, IS4EU-1_NV1p, composed of CC the THAP DNA-binding N-terminal domain and catalytic "DDE" CC domain, which is conserved in all IS4EU transposases, and (ii) CC the 1034-aa IS4EU-1_NV2p exonuclease (its C-terminal part CC contains also two PHD zinc-finger and the Ulp1-like cysteine CC protease domains). Comments and questions send to Vladimir CC Kapitonov. XX FH Key Location/Qualifiers FT CDS 108..1721 FT /product="IS4EU-1_NV1p" FT /note="IS4EU-TR transposase." FT /translation="MVHCIVVGCASKSGKSRVSFHTIPKIVSNQGEEHEEL FT TRERRRRWISAISRGDTETKRILDSERVCGLHFVTGKAAASWDRYHIDWVP FT TLNLGKPQAKQPTVDKQKEEASLKAERAKERRKRSIERQQIEAAKKRKELE FT QTGLTVQNIDFAIASTSTEDVSGLDAHSDEACGSTSYEYFDGDETEKGIQT FT VVHEMIDRSTSTEDFEVVSEGRRNRGMQTQEFNYLFKNSVYQAPDKDFFQS FT PDKVRFYTGLSSFDILMVVFEHVSPYVSRRSDLTSLNSFQEFIIVLMKLRL FT NVPFQDFAYRFEVSLTSVSRIFTSWIHAMDSRLSCFIHWPAREQLWKTMPM FT CFQYTFGRKVTVIIDCFEVFIEKPTNLMARAQTFSSYKNHNTVKILIGITP FT QGTISFVSEAWGGRTSDKFLTENCGILEKLIPGDTIIADRGFTISESVGLK FT QGKLVIPAFTKGKAQLHPVDVERSRGIANVWIHVERVIGLLRRKYTILEGT FT LPTKFLSCDQNGPTENQVPIIDRILRVCSALVNFCPSIVPFD" FT CDS join(6236..5834,5627..2929) FT /product="IS4EU-1_NV2p" FT /note="IS4EU-EX exonuclease." FT /translation="MSVPVLSKYATSLEGNIKNRYIQKIEKIGIDPATIPD FT EELNPECLPPIEQSDLFSFLVLETSHYTNDQFKNYKSLEAYNQVVSGFVAS FT VKGRIVSDKYVVVAKVRHSQRMNDPLVDIWLITGKDGRIFSAHCLGYPQMS FT VPVLSKYATSLEGNIKNRYIQKIEKIGIDPATIPDEELNPECLPPIEQSDL FT FSFLVLETSHYTNDQFKNYKSLEAYNQVVSGFVASVKGRIVSDKYVVVAKV FT RHSQRMNDPLVDIWLITGKDGRIFSAHCLGCKAGLAESCSHIASVLFYIEC FT WTRINGKLACTQVKCSWLLPTYVSNVTYARAKEIDFSSAKKLKEKLDDNIE FT SFNEYSQSRTVGDATNKIMTPSVSAEDVSEFYKKLNQCETKASILSLIDPY FT ANQFISKSRNIPVLTDLYESSNLDLKYPELLRKCLEVKINISDEEIDQAKS FT PGFFRHRAGRIGASVCGAVFHGNLAQPSQNLIQSICYPHLFKINNKATKHG FT CKYEEQAIKSYEHHMKSLHTNFQIKRCGLFINKDFPFIHATPDFLISCDCC FT GLGCGEVKCPISVTNGNFNEYSLKASSCLENVNGVLKLKKSHNYYYQVQQQ FT LFTLPDRKYCDFVVFAIDSDGNSHVLCDRINPDPSHSSGVMKKIETFWRIC FT ILPEMLGRWYTRRCDLPESKLIDNVICFCRGQPNDDIVSCTNADCPYGQFH FT TKCLSLHNVKMPKQWYCPHCCKLPQLKKRAKAKVAPSQVNQAAMLKTTICI FT CNEKATMTDRLIECHNVNCSNGNFFHLKCLGLKRMPNNSKTTWLCNICRGK FT KGNTMPCDKPTTSTSTTPITNPKSPATTSNLSDDDDNDSEDEIEITKVSTS FT SGSVNKYAILANLNNADYDIISDPAGWLTSDIIQYAQVLIKEVNPAIEGLQ FT RPTLGRVRNFDVVSSEFIQILHTGSDHWVCVSSLGCPGYVHLYDSLYHDVI FT SQEIEEQTNDLLGGSLISLDFVPVQQQSNGSDCGVFSIAFATCLAFATNPS FT HFTFDIPKMRSHLLSCLKDETISMFPSF" XX SQ Sequence 6387 BP; 2001 A; 1167 C; 1249 G; 1970 T; 0 other; ttcttgactt tcacccacgt gacaccgcac ttgacaacgg ttgctatccg ccattactgt 60 gcccctcaag cgtaaacaaa cagagatata tagtactttt actcaatatg gttcattgta 120 tagtggttgg atgtgcttct aaaagcggaa aaagtcgtgt tagctttcat acaataccca 180 agattgtatc aaatcaagga gaagagcacg aagaactcac tagagagaga agaaggcgct 240 ggatttcagc aataagtcga ggcgatacag agacgaagag aatcctcgac agtgaacgag 300 tatgtgggtt acattttgtg actggaaaag ctgcagcctc ttgggataga tatcacatcg 360 actgggtgcc aactctaaac cttggaaagc cacaagcgaa gcagcctaca gtcgataaac 420 aaaaagaaga agcgagtttg aaggctgaaa gggccaagga gcgcaggaag agaagcatcg 480 agcgtcaaca aatcgaagca gctaagaaga gaaaagagct ggaacaaact ggtctgactg 540 tgcaaaacat agattttgct attgctagca catctactga agatgtttca ggcctagacg 600 ctcattctga cgaagcttgt ggcagtacaa gttatgaata ttttgacggc gacgagacag 660 agaagggaat tcaaacagtc gtccacgaaa tgattgatcg ttccacttca acggaggact 720 ttgaagtagt ttctgaaggc aggagaaata gaggaatgca gactcaagaa ttcaattatt 780 tgtttaagaa ctctgtatat caagctccag ataaagactt cttccaatct ccagataaag 840 ttcgttttta cactggattg tcttcgtttg atatactaat ggtagtgttt gaacatgtaa 900 gcccgtacgt atcacgacga tcagatttaa ccagcttgaa cagctttcaa gaatttatca 960 ttgttttgat gaagttacgg ttaaatgtac catttcaaga cttcgcatac cgttttgagg 1020 tgtccttaac aagtgtgtca aggatattca cctcatggat acatgcaatg gactcgaggc 1080 tgtcttgctt tattcattgg cctgcaaggg aacagctgtg gaaaactatg ccaatgtgtt 1140 ttcagtacac ctttggtcgt aaggttactg taataattga ttgtttcgaa gtttttattg 1200 agaaaccaac aaaccttatg gccagagctc agaccttttc ttcatataag aaccacaaca 1260 ctgttaagat tttgattgga atcacacccc aaggcactat ctcatttgtt tctgaggctt 1320 ggggaggaag aacatcagat aaatttctga ctgagaactg tggaatccta gaaaaattga 1380 taccaggaga tactataatt gcagatagag gatttacaat ttctgagagt gttggtttga 1440 agcaaggaaa gctagtgatt cctgcattca ccaaaggaaa agctcagctg cacccagtag 1500 atgtagagcg ttcaagaggc atagcgaatg tttggatcca tgtggagcga gtgataggtc 1560 tactacgaag gaaatatact atattagaag gaacactccc cactaaattc ttgagttgtg 1620 atcagaacgg tcccacagaa aaccaggtac ccataataga ccgtattcta agagtttgtt 1680 cagcccttgt aaatttttgc ccatcaatag taccatttga ttagctagtt taaatgaatt 1740 tttattgttt tctaagacaa taccctggtg gaaatctttc ccagaatcct agtagatatt 1800 ggatctttaa tcatcctatc aagatcctgt gggactctaa gactttggta aatcctaatc 1860 ctggacagaa tcctgtttgg gatcccgata gaatcttaca ggatcctgga aaatattttc 1920 acaaggggag tgcaagaatt atgtactaga ctaaagatca accacttacc tctggccaaa 1980 atacctaaat ccatttttgg actacttgat tactttcagc atatacattg ttgctattgt 2040 aaataattat tgatatttat taatagagtg gtccatttgt gttcttttat ttgtacagct 2100 actcaccata ctttaatcaa aggttaatgt aaatcattct aactaaagca atagcactga 2160 aactgtgaaa caaggactaa ctaaaaagta caaatagtac taattaagca atagaaaaca 2220 aaggattttg ctactatttg tctctatagt taatagtaga catattttag ttatttcatg 2280 gtttaagtgt tatcgcgcta ttggacaaaa ttatttagct gcttatcagg tgatctaaaa 2340 cagcaaagat acatgttatg ttaacaaaaa gttttttttg taaacaagtg ttaatcattt 2400 aaaaatctat gatgtaaatg catgtctaag ttggcaaata acaaactcat agtgactggt 2460 tttaaactaa aaagcaacaa caagattgtt gaatttttga atcaaatatt atttatatat 2520 ctaaagtcat cttgcacatt gtcaatataa tattaagaac aggaacaaaa taatttcaat 2580 atttagcaaa attatttcaa aacatgacaa tattgcttaa attcatatct ctggtaaatt 2640 ctatggcaaa ttattgtaaa ttttatgtat cattgtgaat gatttcacat tattttacac 2700 caatggacat gcaaatatgt tttgttattt acaaaattca gtgattttta ctgcatttag 2760 attgaaaaca atttaactgc aaaataaaaa ggattaaata ttgcagaata gtgctaatta 2820 aggatagtaa acaacagatc gcactattta gtattactag acaggttttg tggatagctc 2880 aatggctgca ttgtttgcac tctaattaca aaatttatca agaaattaga aggatggaaa 2940 catgctaatt gtctcatctt tgagacatga taacaagtgt gagcgcattt tgggaatgtc 3000 aaaagtaaag tgacttggat tagtagcaaa agctaaacat gtggcaaatg caatagaaaa 3060 aaccccacag tcactaccat tgctctgttg ctggacgggt acaaaatcta aactaatcaa 3120 acttccacct aggaggtcat tggtttgttc ctctatttct tgacttataa catcatgata 3180 taaactatca tacaggtgaa catatccagg acagcccagt gagctaacac agacccagtg 3240 atcacttcca gtgtgtagaa tctgaataaa ttcactagac actacatcaa agtttctgac 3300 tcttccaaga gttggtcgtt gtaagccctc aattgctggg ttaacttctt ttatcaggac 3360 ttgagcatat tggataatgt cactagtaag ccatccagca ggatcactaa tgatgtcata 3420 atctgcattg tttaaattag ccagaatagc atacttgtta acagaaccag aactagttga 3480 cacttttgta atttctattt catcttcact atcattatca tcatcatctg ataagtttga 3540 tgttgttgca ggtgatttag gatttgtaat aggtgttgta gaagtagaag tggtaggttt 3600 atcacaaggc attgtgttgc ccttttttcc tcggcagata ttacatagcc atgttgtctt 3660 ggaattgtta ggcattcttt tcaaccccaa gcatttcaga tggaagaaat ttccattgct 3720 gcagtttaca ttgtggcact caatgagtct atcagtcatg gttgcctttt cattacagat 3780 acaaattgta gtttttaaca tagcagcctg gtttacctgg gatggtgcaa ctttagcctt 3840 tgcccgtttt ttgagctgtg gtagtttaca gcagtgaggg cagtaccatt gctttggcat 3900 tttcacatta tgtaaagaaa ggcatttagt atggaattgt ccatatggac agtcagcatt 3960 ggtacaggat acaatgtcat cattaggctg tcccctacaa aaacatatga cattatcaat 4020 gagtttgctt tcaggtagat cacaccgtct ggtgtaccat cttccaagca tttctggaag 4080 aatgcaaatt ctccaaaatg tttcgatctt tttcataaca ccgcttgagt gggatgggtc 4140 agggttgatt cgatcacata aaacatgtga gttcccatca gaatcaatgg caaaaacaac 4200 aaagtcacaa tactttcgat caggcaatgt aaatagctgc tgctgtacct gatagtaata 4260 gttgtgggat ttctttaact ttaatactcc attcacattt tcgaggcaag agcttgcttt 4320 caggctgtat tcgttgaagt taccatttgt gacggaaatg gggcatttaa cttccccgca 4380 gcccaatcca cagcagtcac acgatattag aaaatctggt gtagcatgta taaaaggaaa 4440 gtctttgttt atgaaaagtc cacatctttt aatttgaaag ttggtgtgta gcgatttcat 4500 gtggtgttca taacttttga tagcttgttc ctcgtattta caaccatgtt tggttgcctt 4560 gttgtttatt ttaaatagat gcggatagca gatagactga attagatttt gagaaggctg 4620 tgcaagattt ccatggaaca cagcaccaca gacagaggct ccaattctgc cagcacgatg 4680 cctaaaaaat cctggacttt tagcttgatc aatctcttcg tctgaaatgt ttatcttaac 4740 ttctaaacat ttccgtaaaa gttcggggta tttcagatct aaattacttg attcgtaaag 4800 atctgttaaa actggaatgt ttctgctttt tgaaataaat tgattggcat atgggtcgat 4860 caaacttaat attgaagctt ttgtttcaca ctgattcagc tttttgtaaa actccgacac 4920 atcctccgct gaaacgctag gggtcatgat cttgttcgtt gcgtctccaa cagttcgaga 4980 ttgagaatat tcattaaaag attcaatgtt atcgtcaagt ttttctttta actttttagc 5040 agaagaaaaa tcgatttctt ttgccctagc ataggtcaca ttacttacat aagttggaag 5100 gagccatgag cattttactt gcgtacaagc cagctttccg ttgattcgag tccagcattc 5160 gatataaaat aagacactgg caatgtgtga acacgattcc gctagtcctg ccttacagcc 5220 caggcaatga gcggagaaaa ttcttccatc ctttcctgta atgagccaga tatcgacgag 5280 aggatcattc attcgttgag aatggcgaac tttggctacg actacatact tgtcagaaac 5340 aattcttccc ttcacggacg ctacaaaccc agaaaccact tggttgtatg cttcaagact 5400 tttatagttc ttgaactggt cgttagtata atgacttgtt tccaaaacca agaaactaaa 5460 caagtccgac tgctctattg gcggtaaaca ctcaggattc agttcttcat cgggaatagt 5520 agctggatcg atgccgattt tttcaatttt ctggatgtaa cgattcttta tattaccctc 5580 tagtgatgta gcatatttcg acaatactgg tactgacatt tgcgggtcta aaaaagcact 5640 ttttgacgag aaaattagaa aacactacag aaatgacatt actttacata catttcctta 5700 ctgctgaggg gcacagtaat ggcggacatg gtaattggat atggctgtga cgtcacgtga 5760 aagttagtcc agcattcgat ataaaataag acactggcaa tgtgtgaaca cgattccgct 5820 agtcctgcct tacagcccag gcaatgagcg gagaaaattc ttccatcctt tcctgtaatg 5880 agccagatat cgacgagagg atcattcatt cgttgagaat ggcgaacttt ggctacgact 5940 acatacttgt cagaaacaat tcttcccttc acggacgcta caaacccaga aaccacttgg 6000 ttgtatgctt caagactttt atagttcttg aactggtcgt tagtataatg acttgtttcc 6060 aaaaccaaga aactaaacaa gtccgactgc tctattggcg gtaaacactc aggattcagt 6120 tcttcatcgg gaatagtagc tggatcgatg ccgatttttt caattttctg gatgtaacga 6180 ttctttatat taccctctag tgatgtagca tatttcgaca atactggtac tgacatttgc 6240 gggtctaaaa aagcactttt tgacgagaaa attagaaaac actacagaaa tgacattact 6300 ttacatacat ttccttactg ctgaggggca cagtaatggc ggacatggta attggatatg 6360 gctgtgacgt cacgtgaaag ttaagaa 6387 // ID TE-30_NV repbase; DNA; NEM; 770 BP. XX AC . XX DT 28-MAR-2011 (Rel. 16.03, Created) DT 28-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-30_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP428; TE-30_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 349-703 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 349-703 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-770 RA Kapitonov V. and Jurka J.; RT "A family of TE-30_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (28-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~85% identical to the consensus. XX SQ Sequence 770 BP; 209 A; 114 C; 179 G; 264 T; 4 other; attccttatt atgaagtttg aatgtttaga tgaaggaaga tttaatttat ttttctggtc 60 attacttctg gtcacaatgg atggactgga ctcgagagac tataaccggt ctaaggttaa 120 ggttagcgct caggacggag gaaaaccatg aaatatgagc tttttacttc cagatcgtag 180 ttgaattcgt agtttggtcg cacagcataa ttcatttctk gtaagtttkc ttttctagag 240 cgttttagtg tgatattatg catatttaca gtgaaaattc cttcgagctt gacktgcttt 300 tcggatcgaa attccaccaa ccagcagctc gcagacgtta tggaccaatc acagagcggc 360 ttggaaaaaa cttgtggaat gggagaaatg tttctttctc gctgaaaaac tgttatctcg 420 tctagatgaa gggagatttt gctctttttt caaggttaga agttgaagtg catttgtgag 480 ctattgttta aggcaaaaat ttgtggatat gtgacgactt caatgcattt atacgacttt 540 tacgccatct ttgctcggtt ggtgaaatta gtgttgaatt gccaatgcgt gtgtttgttt 600 ttcaaaagaa tcgcttgtct cgcgctgttg tttgggggat aaacttttta gcatggaata 660 cacataagat gagaaggagt gcwacagtta tttagcaaaa gatgcctggt ctaagggggt 720 tttgtgtgtt tttttaacga tggttgataa ggacatacca taattaatag 770 // ID DNA-9-37_NV repbase; DNA; NEM; 97 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-37_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP310; DNA-9-37_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-97 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-97 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-97 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-37_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 87% identical to the consensus. XX SQ Sequence 97 BP; 22 A; 25 C; 26 G; 24 T; 0 other; taccctcctg cgcagagctt tctgtgtcgc tcgtttactt tgctctcatg tggagcaaag 60 taaacgagcg acacagaaag ctctgcgcag gagggta 97 // ID DIRS-28_NV repbase; DNA; NEM; 3021 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-28_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-28_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3021 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3021 RA Kapitonov V.V. and Jurka J.; RT "DIRS-28_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 423-423 (2007). XX DR [2] (Consensus) XX SQ Sequence 3021 BP; 712 A; 813 C; 669 G; 827 T; 0 other; cttccatcgc tccgaagact gcccttccgg tcaacaccgc ctcgccacac accgctcacc 60 gcgaattcat cgtaacaacg tgtgcttcga cttcaaccga gtcaccggct gttcccgtca 120 agcctgcatc tacccccacg tttgccaaaa atgcgccgac tcccatcccg ctcaccagtg 180 tcgcgccgga atctccgcat ccgcaggcca gcgccaaggc aacagaagcc aagctccggg 240 tcgcccagct gcacagtaaa aggaaggcaa cgataagtac accgattaaa atagatcttc 300 tagaacagga actatcttcc catccagatc gggaattcgt aacttcccta cttaattcgt 360 tacgtttcgg tgcccgcatt ggttttgatg gcacccaaaa gtctcgtgtt tcacctaatc 420 ttatttcagc tcgggagcac cctgagataa tttcaaaaaa catagaaaaa gaggtcaact 480 taggtcgtat ggcaggctcg tattgccacc cagttggggt agtgcccaaa aaacattcgg 540 ccgactgaag cactatttat cattcatcct tcgccaaggg agatagcata aacgatggaa 600 ttcctaaaga ctcttactca ctccagtacg ttagagtgga cgacgctatt agcattctca 660 cctcactcgg caaaggtgcc tttatggcaa aaaccgacct caaatcggcg tttcgtctaa 720 ttccaataca cccgaacgac tgtaatttac tggggggcgc tgggagtctc gttattatgt 780 ggatttatat ttgccttttg gtttacgctc gacgccgttt ttatctaatc aactctccga 840 agcgctagtg tgggttctta aacataatta caacgttcgt aatgttattc acatattgga 900 tgacttcttc gtagcggagt catctaaact aggttgttta gagagtttca caagactgct 960 taaattcttt atctcagtgg gggcccctgt tgtggcttcc aaaacaatcg gtcctagtac 1020 aacacttgaa ttcatgggaa tcgagctcga taccctacgt atggaggcgc gcttaccttc 1080 agataaatta gaacgtctta aagcatcctt gcgggatttc aagcgaaagc gttccgctcg 1140 cctcatagag cttcaatcct taatcggcac tttgcaattc gcctgccgcg ttgttgttcc 1200 gggtagaact ttccttcagc gcatcataga tctcacgcgt cgggtaaatc accgatttca 1260 tcacgtcaaa ttgagccacg gtttttttca ggatttagca atttggcagc agtttacgga 1320 gaactggaac ggcaaagctt tcttcctcga agaagcaatc cgtaccagcc cggatatgga 1380 actctattcc gacgctagcg gtagtatcgg tttcggcggt tacttctctg ggcgctggtt 1440 ccaaggccga tggccgcctc acctcgccat atccaaaaag acaggcatta gtatcgaatg 1500 gcaagaatta tttcctatag tagtagcctg ctccctatgg cgctccgagt tctcgggcaa 1560 gcgaattcag ttctggtgtg acaatcaatc agtcgttcac attgtcaaca caggtcactc 1620 aaaagcgccc aggattatgt cacttatgcg tcacttagta ggcatttcca tggctcataa 1680 ttttgttgtg cgttgtcgct tcgtaccagg tcatttcaac ggcatttctg atgcactttc 1740 tcggtttcag atggcacgat tcagagagct cgcaccggcc gcggaccaga ccccttgtgt 1800 catcccgcct tcgctaatga ccctctaacg cgcgaggtga aacactacgc tgataaggcc 1860 ctggctatca acaccaaacg cacttatcac gcaggcgaga aacagttcat tgacttcgcc 1920 tcatgaatag gctttttgac agccacgggg acattttccc agctagtgag agtactctta 1980 tctattttgt tacctttctc gcgcgtagag taaagcacgg tactattcgc acatacttgg 2040 cggccgttcg caacatgcac atcgaaaacg gattccagga ccctatacag ggtcgcctaa 2100 ttttaaacaa ggttttgcgg ggcattttac gggtgcaggg tcagcacaaa acagctcgtc 2160 aacccgtaac tccacagctc ttaaaagcca ttcgtccggt tttgcttagc tggctaagcg 2220 cgcacgattt ccatatgatt tgggcggcat tcacacttgc ctttttcgtt tttttacgtt 2280 gtagtgagtt tacttgcccg ggcgtacgca actttgacat agtttataac ttatctccag 2340 tcgacataaa tttccaccct aacccttcag caccgcttta catgaaagtc gccattaagg 2400 catccaaaac cgaccctttc aggcaaggca ccgttttgac aatcgcacgc tccggttgcg 2460 acctatgcgc cgtgtccgcg atgcaagagt ttgttcgcat ctgtgggttt ttcggtttcg 2520 ttccggtaaa tacctaactc ggtcattggt ctctagcatt cttagagacg cagcacgcgc 2580 ttgcggcctt cctcatagca gtttaaaggg gcactcattt agaattgggg cggcaagctg 2640 cgctgccgct gcaggcctgc ccgactggct tatcaaagtg cttggtcgtt ggtcctctga 2700 ttgctaccag ctatacgtac gtacaccaca aaacatttta ttaactgctg caccaaaaat 2760 ggcgatagtc cagcctgtca ctctgactta agcattgttg ttattgcgct tggggggatg 2820 cattctgcat cttgtggcgg ttagttctgt ctgacgactt ccccaagcgg ggtttgtttg 2880 ctacgtcacg cgctagtcgt cacgtcacgc taactcgctt tcgatcggtc tgtctccccc 2940 catattctgc catagtcgtg cctagtgtat tcattgcgtt gcaaagcggg catttccttt 3000 tcacgcgtaa agcgacatta a 3021 // ID DNA-7-13_NV repbase; DNA; NEM; 361 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone DNA-7-12_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; CON7; KW TE4-1_NV; DNA-7-12_NV; DNA-7-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-361 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-361 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-361 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-13_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX CC This is a non-autonomous DNA transposon characterized by 7-bp CC TSDs. This family was reported originally as the unclassified CC transposable element called TE4-1_NV [1,2]. XX SQ Sequence 361 BP; 104 A; 76 C; 64 G; 115 T; 2 other; cacagggagc ccactcaact cagcgcattg tttatttagc atgtgcttta aacttcgttt 60 atgaatatca attaggtcac gaagttctca ataaaactcc ttccaaatac atatgtctta 120 tactttattg tgtccattca tgtttggaac acttgtttta catccctgcg tcgaattctt 180 tcagaaatat tcgggttttg caaaaactcg acttcaagcc taatggctta agttcagaca 240 agggtggaaa gttattccca aactctgwga cgccactttt sgtgacctaa ttgatattca 300 taaacgaagt tcaaagcaca tgctaaataa acaatgcgct gagttgagtg ggctccctgt 360 g 361 // ID Gypsy-12-I_NV repbase; DNA; NEM; 4034 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-12_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12-I_NV; KW Gypsy-12-LTR_NV; Gypsy-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4034 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4034 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-12_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 455-455 (2007). XX DR [2] (Consensus) XX SQ Sequence 4034 BP; 1311 A; 860 C; 903 G; 960 T; 0 other; tggtgtcaga agtggttaac cactggagaa tattaattgt taaagaaaag tcgacaaaac 60 aaggaaacga tggccgaaag tggggaaatg tatcatcgag ctccgggacc tttggtgttg 120 gatgcgaatg catcagaaaa ttggagaaag ttcctaatgc agttcgaaat ttacttggtt 180 gcaaaaggaa aggacgacaa gggagataag ttaaaagtta atttgttact taactgtgct 240 ggaccgagtg caattgaaga gtatagccac tttgtgtata ctgcaggcga gagtaatgaa 300 tcttatggtg atgtgtgccg aaagttccat gaactttgtc gaggagctaa gaatgtcatt 360 tatgagcgac tgctcttcaa tcttagaaag atgaattgcg aggggagttg ttgaaaaagc 420 cagaccttac cctacaaacc gcgcatgatt actgcagaac ttatgaggcg actgagctgc 480 agaagtataa gtttgttcca cagacagtag tcccaagtaa aacagtgtct gtgcaaccag 540 tccaagttaa gaaagaacag ccgtcttgta agttctgtgg atatcgccat tcatttgcac 600 acccaacacg atgcccagct ttaaaaggaa ttgcaagatt tgtagcaaaa caggccattt 660 tgcaaagatg tgtaaaaaca aacagaaaaa agatccagaa gtgcatgtgg tggaacagga 720 gtatgactca agtgacagca acgaaaccca cacatacttt ggatccattg aagtcggaag 780 cgtgttacag aaccagcaac ccaaaaagag cctgataaaa gtcatgatag caggaaaaga 840 ggtcaaactg aaagcagaca cgggtgcgga ggctactgtc atcccttaca acttgtacaa 900 gagcatcacc aacaagccgt tgaaacgttt acaccagcct ttgaagggct ggcttgcgac 960 taagcccatc taccctaaag gatgtgtccg ccttccaaca cagtacaaag atcgaaagat 1020 agatctgtta tatcttgtag ttgatggaga gttcacccca ctactaagtt gtgaggcttg 1080 ccttgatctt gaagtcctac agttcatgga tctcacattg ctagattcac catcagcaca 1140 aacatcaaac atcgacttgt ccagagaaca aagcaaaagt accacaaccc tcacaagtga 1200 ccctgttctg aaagattacc ttgattgctt cagtaacaaa ccaggaatgt tacccaacaa 1260 agtacaccta gaggtagact ctgcagtaac tccagttata cacgcaccca gaaagatccc 1320 agtatccatg ttagacccaa ctcaacagaa gctgagagag atggaagaag atgggatcat 1380 tgttaaagaa gaagaacata ccccttgggt ctcttcgatg ttagtaatcg ataaacgaaa 1440 aggcaaagaa aagaaaagcc caccaaccaa agacaacatc agaatatgta tagacccacg 1500 tgacctcaat agagccctca agagacccca ttatccgatg gccacagtgg aacaggttgc 1560 caacaaactc accggtgctg aaatattctc aacgttggat gcatgcagcg gtttttggca 1620 actaccagta gacgaagaaa gctcgaagct cctgactttc aataccccct ggggtcgata 1680 cagattcctg cggctcccat tcggcataag ttccgcgccc gagatttacc aacgagagat 1740 ggaccgactc ttcgcaggag taccagtaga aataatcgtt gacgactttt tgatacatgg 1800 tggaaatcaa tgtgagctag atgacaagat gattgcagta ttgaagagga gccgtgagat 1860 aggtctaaag ttcaatccac gtaaagccaa acttcgagtt cctgaagtca gctacgttgg 1920 acacctattt actgcagacg gtttaaagcc tgatcctgaa aaggtaagag ctatcaacga 1980 gatgcctgcc ccgaccgata aagatggcat actacgtttc ctaggaactg taaactatct 2040 ggataaattt attgaacata aagctgatct ccagggccct atctcgcagc taacaaggaa 2100 tgataccgca ttcgtatggg agacacctca acagcatgca tttgacaagc tcaaagcagt 2160 cattacctca gcgccagttt tagcctattt tgacaacacc aaagagacag tgcttaatgt 2220 tgatgcaagt ggcacgggat taggtgctgt gattctgcag gacgaaagac ctgtagcatt 2280 tggctcaaaa acactatcac ctgctgagac aaggtatgcc aacatcgagc gagagcttct 2340 ggcaattgtc tggggaactg aaaagttcca tacttatgtt tatggacgtc gtgttgtagt 2400 tgaaaccgac cacaaaccac tagaagccat cttcaaaaag cccttgaatg aagcaccacc 2460 gagattgcag aggatgttgt taaagctgac aaagtatgac cttgatgttc gttatgtgcc 2520 aggaaagaaa caattcatct cagattgctt aagcagagcc ccagttagtg acactaaacc 2580 agttagtgaa ccagaagaga tgattggaat caacttaatt gacagtcttg gtgtagattc 2640 aagcactttg caaaaattca aggaagcatc aaactgcgat gttacctctc aagtggtcat 2700 ggaatatgtc gttaaaggtt ggccagcaga aaaacatcaa cttgatgagc tagcgagaga 2760 atactggagt ttaagagagg aacttagcgt agaagatggt ttgttattca aagcagacag 2820 aatcattgtc ccgagatcgt tgaggggaga ggtgctagaa gaaattcatg gcgcacacat 2880 gggtgagaac aaaagtctca gttttgcaag agaatatgtt ttctggccct caatgactgc 2940 acagatcaaa gacaagatta gttcctgctc catatgtaat gccttccgaa accaacagcc 3000 aagagagacc ctactaccac gtgaggttcc tggattgcct tggcaagtga tcagtactga 3060 catctttgaa tatgccggac attcctattt gcttgttacc gatttgtatt caaagtactt 3120 tgagattgag ttgttacgcc aaaccactgc taattgtgtt atcaataact taaagaagat 3180 ttttgcaagg tttgggatcc cggtggaagt tctgagcgac aatggctccc agtacagtaa 3240 cactagaaac ctttttaata gttcacatga gttcaaaaag tttgcagatg agtggggttt 3300 ccgtcacacc acaagctctc cagagtatcc acaatcaaat ggagctgccg agaaagcagt 3360 tcagaccgca aaacggattt taaagaaagc ggctgctgac aacaaagatc cttttgaagg 3420 attactcaaa tacaggaata caccctttga tgacttaggt gtgtctccag ctcagctgct 3480 aatgagtagg agaacacgta cccaactacc gactcatcga cgtttgctac tgcctcagcc 3540 tgttgaccca aatcaagttg tgaagacatt gaaacatcgt cagagtgttt caaaaaagta 3600 ttatgatagt catagtcatg atctccctcc tttacaagtt ggagataagg tgcgtatccg 3660 tccaaaccgg gaggctgagt ggaggaaagc agaagtattg ccccgatcgt acttattagg 3720 agatgagcgt gggcgtgtct tcaggagaaa tcgacgacaa atcatttcaa cacctaatga 3780 tcaatcgatg agcacaagtc cttttgttat accagccatt cctcaactac caccagaaag 3840 taccaacaac cccacacagt taagcaataa tgtgacagca tcgcctacac caccaaagtc 3900 ttctgagagg caacacgaga cgacaccgat gagcacagca tctggcaggg ttatcaaaaa 3960 accacaaaga cttattgaac attgttaaga acatttattg aacacttaac ctaacacttt 4020 gttgagaagg gaga 4034 // ID DNA-8-1_NV repbase; DNA; NEM; 156 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-8-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-8-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-156 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-156 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-156 RA Kapitonov V. and Jurka J.; RT "A family of DNA-8-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 156 BP; 32 A; 33 C; 34 G; 57 T; 0 other; gagaagtgta gaagcccgct cgtaaggcct aacaggattg gctggattac ctcattgttc 60 tattgtattc ccgttctatt gttttgtttc ccattgtttt gtctgtggtg catcaatcca 120 atgtggtgaa atcttctgat agcttctaca tgaccc 156 // ID Gypsy-53-LTR_NV repbase; DNA; NEM; 743 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-53_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53-I_NV; KW Gypsy-53-LTR_NV; Gypsy-53_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-743 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-743 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-53_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 542-542 (2007). XX DR [2] (Consensus) XX SQ Sequence 743 BP; 211 A; 142 C; 139 G; 251 T; 0 other; tgtgacaggg tcactactag ttagtatatg aacattgata atcatcaaat catgcacttt 60 attttactgt attttgtagt ttagctttaa aatttagttt gtttcacaga tagactcagt 120 gcttagcaat gtgattggta tgtgattcag aaactcgtag gcaacaccta cgtgctaaaa 180 cgtgcatcta ggcggcgcac gaatcacatc ccaaagttat cttaggttag atagtgtaat 240 ctacttccta cgcgtcggta cgagcaaagg gcttcctggc cgcgttattt agctacggaa 300 atgcgcagga ctattctaca cctttctgca attttaggca tgtcctttcc ttgttccacc 360 gactataaat agaggcactt ttgttagtaa caatcagttg cgaagtaaga acagtaagaa 420 cgacaacaat attttcgatt ggaaagagca tcgatgaaag aagacgaaag aacttgcttc 480 tagcaagatt gtaatgcctt attttcgttc ccgtttgaac taccgtttgt agtacccgtt 540 tatattaccg ttaagataca gttcctagta ctatcctgta ctatatttta gaccatccta 600 caacaattat tcatttggct acatgtttgt aaaattgtaa attcgttcat tttaatttgg 660 cttttgctat aataaatgtg ttttcaatta cattgagcaa tattagttcg tgtcctgcgt 720 gcaagccctt gccgtcggtt aca 743 // ID SINE2-4_NV repbase; DNA; NEM; 409 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Starlet sea anemone SINE2-1_NV non-autonomous non-LTR DE retrotransposon - consensus. XX KW SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; KW NVREP317; SINE2-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-409 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-409 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-409 RA Kapitonov V. and Jurka J.; RT "A family of SINE2-4_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC The 5'-terminal ~80-bp pol-III region was derived from tRNA. This CC family was reported originally as the unclassified NVREP317 CC non-LTR retrotransposon [1-2]. The genome contains ~100 copies of CC SINE2-4_NV. It contains also several thousand copies of its CC 100-bp 5'-terminus that is a part of the SAT-2_NV satellite DNA. CC SINE2-4_NV shares its 330-bp 5'-terminal portion with SINE2-5_NV CC (83% identity). However these two SINEs have different 3' ends CC due to different autonomous non-LTR retrotransposons catalyzed CC their transpositions. Internal portion of SINE2-4_NV (pos. CC 144-272) is 81% identical to this in SINE2-3_NV (pos. 153-294). CC The 3'-terminal portion of SINE2-4_NV is also similar to the CC 3'-terminus of L2-1_SP. So it is most likely that SINE2-4_NV was CC multiplied by the L2 autonomous non-LTR retrotransposon. XX SQ Sequence 409 BP; 102 A; 97 C; 104 G; 106 T; 0 other; gagagtggcg cgatagctca gtggtacggg cttcgcttct caagcaagag ggccggggtt 60 cgaacccagg tcaggtcaac ttgggatttt tttcagaggt gtaataaacc tggctctcta 120 cattggggac tgtgaatccc tcgtcttctc ggataaggac gttaagccgg aggtcccgtc 180 tctcaccgca catcattaac ctgtattggg ggacgtaaaa gaaccgctgg ggacgctggc 240 ccgtggtacc atcttcagtg acaatgctta cacactaact cactcatgat tgtaaactgc 300 gtggagcagt ccgtatctac acactgacga gtaaagtcag tcacatgtga agcgcatttg 360 atcatttcgt atgttaaagt gcgctataca aatgccaaac atttcattt 409 // ID Crack-1_NV repbase; DNA; NEM; 4623 BP. XX AC . XX DT 22-JUL-2009 (Rel. 14.07, Created) DT 22-JUL-2009 (Rel. 14.07, Last updated, Version 1) XX DE Crack-1_NV is a non-LTR retrotransposon - a consensus sequence. XX KW Crack; Non-LTR Retrotransposon; Transposable Element; KW Interspersed repeat; L1 ORF1; endonuclease; reverse transcriptase; KW Crack-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4623 RA Kapitonov V.V. and Jurka J.; RT "Crack-1_NV, a family of Crack non-LTR retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 9(7), 1345-1345 (2009). XX DR [1] (Consensus) XX CC Crack-1_NV is a non-LTR retrotransposon that belongs to the Crack CC clade, a sister clade of L2 and Daphne. Like in other Crack CC retrotransposons, the ORF1 protein in Crack-1_NV contains a CC domain similar to the central domain conserved in vertebrate L1 CC ORF1 protein. XX FH Key Location/Qualifiers FT CDS 123..908 FT /product="Crack-1_NV_1p" FT /note="ORF1." FT /translation="MDETLLERVNSLEKSMDFFNNQFELIKKKVTTLEREN FT EALRVENNVLNSRISTITDKLRDQEAILDEQEQYMRRECLEFKGIPSLEDE FT NTNDLVIQVAQLAGVELDEDDISISHRLPAANNREWSDYEGNVHPPSPPTI FT IAKFVRRDIKDEIYKARFSLKDKTTQDLEDFNCTDHRNHIYIAESLTQARK FT KLFKACLKAKKDLKFAYAGTANGKVYLKKDKKSRAVYINSPTDIAKLRRSH FT AIQPPIADVSRSSRPIDQASS" FT CDS 1038..4274 FT /product="Crack-1_NV_2p" FT /note="ORF2: AP endonuclease and RT domains." FT /translation="MTSTECRNCLKVVKKNSRGIQCDICLEWFHLKCTVLS FT VKEYNYFSRTNDLWICLFCRHAIFPFQSANNTALAELAYNSNEACLCSRKI FT ANLNLDSLPCFDVMSSLEKISSLSNVEIQSSLAEKAFSALHFNIRSLSKNF FT DRFCHLLDELQNPFPVIGLSETKILDGLPPLTNTCMTGYNFLSQPTLSDAG FT GVGFYIKNNLVYSKRDEFCCSKPEFESLWVEIEIPQQRNIVCGTIYRHPNS FT NLDTTLNFLYDIVERVSKENKFCLIMGDFNLNLLNYDSNSDTNDFVNSLGA FT YHFHPHILKPTRITEHSATLIDNIFFNSLEHQTLSGNILTGITDHLPNFLI FT INKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDI FT FQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGIITSIKLKDKFYKK FT YLVSRSEYYLSKYKCYRNKISQLIRTSKQNYYQNYFATNSKNIKNIWSGIK FT ELITTKPTCSNQPSKLIINNKTVKDPKAIAIAFNNFFATIGSQLASKIPHV FT DRSPESFLGPPLVNSFVLSPVTAFEIEDIISGLNPSKASGPYSIPVCLLKF FT LKSYLSVPLEILYNHSFSNGCVPDQFKIAKTIPIHKKDSASCMDNYRPISL FT LSIFNKILEKLMYKRLIAFINKYNILYDKQFGFREQHTTFHATLLIVDKIQ FT RAIEEGQYSCGIFLDFSKAFDTVDHKILISKLAHYGIRGIANEWFSSYLSN FT RRQFVSVNNSESDEVVLTHGVPQGSVLGPLLFLIYINDFHRCSSIFDFHIF FT ADDTNLFYSNSSLLALESCINENLLHVSSWLAANKLSLNIDKTNFIIFHPP FT QKISNYTLSIKINGKCIKKEKYIKYLGIYIDSHLSWKYQILHIAKKIKRCI FT GVLSKIRHYVNISVLKMLYYTLLFPFLTYSVVTWGNTYATTLKPLFILQKR FT AIRILTFSDFRTPSNPLFYQLSLLKLHDIIYLNNALFMYDFHSDHLPSVFK FT SFFTNINRIHQYNTRLASRKTYYLPKIRTNYGKFNIRFLGVKIWNDIQDDY FT KSESRSSFKTLMISSLLDRYKS" XX SQ Sequence 4623 BP; 1465 A; 901 C; 764 G; 1493 T; 0 other; gtcagcggtt cttggacaag atggcagcca ttttttcggc tccccaaaaa cggctaaatc 60 ctgtttaaat ttacgtgttt atttaagtgt ttatttacgt ctgtgtcatt gaagcaaggg 120 cgatggatga gactctactc gagagggtta attcgctcga aaaatctatg gattttttca 180 acaatcagtt tgaactgatc aagaagaaag tcacaacgct cgaaagagag aacgaggcat 240 taagagtcga aaataacgtc ctgaactcac gtatatctac aatcaccgat aagttaagag 300 accaagaggc tatacttgac gaacaggagc aatacatgag gagggagtgt ttggaattta 360 aagggattcc tagtctggaa gacgagaata ctaatgatct tgttattcaa gtcgctcaac 420 tcgctggagt cgaactggat gaggatgata tttctattag tcatcgtctc cctgcggcaa 480 ataatagaga atggtctgat tatgaaggca acgtccatcc cccatcgccc cctactatca 540 ttgcaaagtt tgtgaggaga gatatcaaag atgaaatcta caaggctcgt tttagtttga 600 aggacaaaac cacccaggac ctagaagatt tcaattgcac ggatcacagg aatcatattt 660 acatcgcgga aagtttaacc caggccagga aaaaattgtt taaagcatgc ctaaaagcga 720 agaaggatct gaagttcgcc tatgctggga ctgcaaatgg aaaagtttat cttaaaaagg 780 ataagaagag tcgggcagta tacatcaact cgcctaccga catagctaag ctaagaaggt 840 ctcatgctat ccagccacca atagctgatg tatctagaag ttcaaggcca attgaccaag 900 cttcatcgtg actggcaaaa ttaaaagatt actaattagt ggacccctaa cggagacaga 960 taagtactac caattaatta tgtgtagctt ttccaagtat gattccctta tagttttttc 1020 tctcgtttat aatctagatg acttctactg aatgtcgtaa ctgccttaag gtagtcaaga 1080 aaaattctcg aggaatccaa tgtgatatct gtctcgaatg gttccactta aagtgtactg 1140 tactctcagt taaagagtac aattattttt ctagaacaaa tgatctttgg atctgtttgt 1200 tttgccgcca tgctattttt cctttccagt ctgccaacaa tacagctcta gccgaacttg 1260 cttataactc taatgaggct tgtttgtgct caaggaaaat tgctaattta aatctagatt 1320 ctctgccatg ctttgatgta atgtcttctc ttgaaaagat ttccagcctt tcaaatgtag 1380 agatccaatc ctccctagct gaaaaagcat tttctgcttt gcactttaat atcagaagtc 1440 tatccaaaaa ttttgatcgt ttttgccatc tgctggatga actacagaat ccttttcctg 1500 ttatcggtct gtctgaaacc aaaatcttgg atgggcttcc ccctcttaca aatacctgca 1560 tgacaggtta taattttctc tcacagccaa cactgtcaga tgcagggggg gttggattct 1620 acatcaaaaa taatctggta tactcaaaaa gggatgagtt ttgttgttcc aagccagaat 1680 ttgagtcact ttgggttgaa attgaaatcc cgcagcaacg taatattgtc tgtgggacta 1740 tttatcgaca tccaaatagt aatctagata caaccctcaa ttttttgtat gatattgtgg 1800 aacgagtaag caaagaaaac aagttctgtt taataatggg cgattttaat ttgaatttgc 1860 tcaattatga ctctaattct gacacaaatg actttgtaaa tagcctgggt gcttaccact 1920 ttcaccctca tatattaaag cccaccagaa tcactgaaca ctcggcaact ttaatcgata 1980 acattttttt caattccctg gaacatcaga ccctaagtgg aaatatactt actggaatta 2040 cagatcatct tcctaatttc ttaattatta ataaattagc acctttaccc cagagttaca 2100 aaatgtacaa acgagatttc tccaagcttg ataaagaagc attattatca gatattcagt 2160 ccatcaactg gatcgatgtc ctaccatcta atgatggatc gaaaaatgtt aacgatatat 2220 ttcaatcctt tttctcaaat atttctgcta ttattgacaa acatgttccc ctgaggaaac 2280 ggacaagaaa ggagattaaa tcactttcca agccttggat taccaagggc attataacat 2340 caatcaagtt gaaggacaaa ttctataaaa aatatcttgt atctagaagt gagtactacc 2400 tctcaaaata caaatgctat cgcaataaga ttagtcagct tattagaact agcaaacaga 2460 actactatca gaattacttt gctaccaata gtaagaatat aaaaaatatt tggtcaggta 2520 ttaaggaatt gataacaaca aagcctactt gctcaaacca accctccaaa cttatcatta 2580 ataataagac agtcaaagac cccaaagcta ttgcaatagc ctttaataac ttttttgcta 2640 caattggtag tcagcttgct agtaaaattc cacatgtaga tagaagtcct gaatccttcc 2700 ttggtccacc gctagtaaac agttttgtcc tttctccggt cacagcattt gagatagagg 2760 atattatttc tgggttaaat ccctccaagg catcaggtcc ttatagcatc ccagtttgcc 2820 ttctaaaatt tttgaagtcc tatttatcag tacccttgga aatattatac aatcactcat 2880 ttagtaatgg ctgtgtcccg gatcagttta aaattgcaaa aacaattcca attcataaaa 2940 aagattcagc tagctgcatg gataattata gaccaatctc gctgctttca atttttaaca 3000 aaatcttgga gaaactaatg tataaaagac ttattgcctt tattaacaaa tataatattc 3060 tctatgacaa gcaatttgga ttccgagagc aacacactac ttttcatgca acacttctaa 3120 ttgtagacaa aattcaaagg gctatagagg agggccagta ttcctgtggg atatttctcg 3180 acttctcaaa agcatttgac acagttgatc ataaaattct tattagcaaa cttgctcact 3240 acggaattcg tggaattgca aatgaatggt tttcatcata cttgtcaaat agaaggcaat 3300 ttgtgtcagt taataattca gaatctgatg aagttgtcct cactcatgga gtcccacagg 3360 gttcagtact tggccccctc ttatttctta tttatatcaa tgactttcat agatgcagta 3420 gtatatttga ttttcatatc tttgctgatg acactaacct attttactcg aacagtagtt 3480 tgcttgctct ggaatcctgt atcaacgaaa atcttcttca tgtttctagc tggcttgctg 3540 ccaataagct ctctctaaat atcgataaaa caaacttcat catttttcat ccaccacaga 3600 aaatctctaa ttatactcta agtattaaga taaatggcaa atgcatcaag aaagagaagt 3660 acatcaaata tctaggcatc tatattgact cccatcttag ctggaaatat cagatacttc 3720 atatagctaa aaagattaaa cgttgcattg gtgttctctc aaaaataaga cattatgtaa 3780 atatttcagt cctaaaaatg ctttactata cattattatt tccatttcta acttactcag 3840 ttgtgacctg gggcaacacc tatgcaacta ctcttaagcc cctttttata cttcagaaaa 3900 gggcaattag aatattaact ttttctgatt ttaggacccc ttcaaatcca ttattctacc 3960 aacttagtct cctcaaactt catgacataa tctatcttaa caatgcactg tttatgtatg 4020 acttccattc agatcatttg ccatctgtct tcaaatcatt tttcacaaat attaacagga 4080 tacatcaata taatacaaga cttgctagta ggaagactta ttacctgcct aagatacgca 4140 caaactatgg caaatttaat attcgctttc ttggtgtaaa aatctggaac gatattcagg 4200 atgattataa atctgaatct cgctccagtt tcaagacact aatgatcagc tctcttttag 4260 atcgttacaa aagctaactc tattattgtt gtaatttaca aacttaagat tctctcctat 4320 atataaatga tccctataat cgacctcccc ttgcttgtgc gtgttttgtt cttgtgcgtg 4380 catctattgt cgtctgtttt tcgtttctgt ttgtattgat attatattga tgtatcatgt 4440 tgtttaccca tgcaattttc cgcttgacct agccgcttaa gctcgattag ctatgctatt 4500 tcttaatgcg gctggtgccc aattataaaa attatattta tttttctcct tttcttattt 4560 aataagtaat atctgtataa tagagggtgc taataaaaat atgttgttgt tgttgttgtt 4620 gtt 4623 // ID CR1-11_NV repbase; DNA; NEM; 3265 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-11_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3265 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3265 RA Kapitonov V.V. and Jurka J.; RT "CR1-11_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 388-388 (2007). XX DR [2] (Consensus) XX SQ Sequence 3265 BP; 862 A; 832 C; 696 G; 875 T; 0 other; tatacgtagc catgagttct caaggaatgt atatgttcca ccctgggctt gtagtctact 60 tttttgctcg tctaattaac ttctggctgt ctcgtggacg atcgtttgtc aatgtatttt 120 ctggcagcca tcttgggatc agccatgctt ccgatgtcct tgcgccgtcg aaaattgttt 180 acagcagttc catcttaaag tccattggta aacatcagcc caagcaacgt ctacctgccg 240 agttatggga taatctggac gatttgggaa taaggaaacc atttagatca agaaaagcca 300 aaaagtcaag caccaaccac catggtcacc ctgtggtatt ccccacagga tacccaccag 360 gcagttctgt ctcggtatca ccatcactgt tgccttctcc tacgacaaga ctacactacc 420 ttaggccagc atctataccg tcactcctac tgtgcaatgt tcgctccgta gctccaaaaa 480 ttggcgaact ggactgtgtt gcgaaactca accgcgctga tgtcttaagc gtaaccgaga 540 catggctctc tgatgatatt cccgactcgg ctgtctcatt gcaagattac attctgttcc 600 ggaaagaccg tcccaatcgc agaggcggag ggcttgactt ctacatacgg agtgatatca 660 agtgtaagcg actttatgat gttgaacttg gtaacgactc tattcctgag accctgtggg 720 tgatcgcaag acctacccga ctccctcgct ctgtgtcctg tgtgctgttc ggcactattt 780 accatccacc tgacgcgaac agcgatgata acgaggctct ttatcagcac atccaagaga 840 ctatagacca atgcttatcc caacaccctg agtgtttgat atccatatct ggcgatttca 900 atccatcttc gaccaatttc tcggcctcta aactgaaacg attgtgtggt ctgacgcaaa 960 ctgtgaaagt actaacccgg gacactggta cactggattg ggtgttgaca aatagaccac 1020 acctcctgcc gagcccggcc cagctgccga aaattggtac cagtgaccac tatgctgtcc 1080 tggtagagca gatactagaa aattctccaa aactgcgcaa acaatcatct actagacgcg 1140 acaccaggcc aagtagactg agagagtttg gccagtggat cactactcac gactggtcaa 1200 acctgttctg cgctcacacc tgtcaagcca agtttgatgt cttctataat acaattacgg 1260 acgcactcga tagattctgc ccgtctagag ttgtccgttc acatccttca gacaaaccgt 1320 ggatgaataa taaaatcaag tcctggattg ctaagagaca gaaaatgctc gctaaattcg 1380 gcagcgactc tgtcatcttc aaattctggc gcggtagagt cgtcagtgcc attcgcacgt 1440 gtaagcgctc tttttatcag tcgaaggtga aaaagcttaa ggacaccaat acgcgaaggt 1500 ggtggaggga agttaaaaac cttacaggac agtcaatgag ccaagcggaa tggtatagtc 1560 agttaataga cgattcctcc atcgccagcg tggataatct gtgtaagaag atcaacgagt 1620 tcttcgtcca gctaacgtct gattttagac ctctgttacc ccacgacgtc acagccattg 1680 ttgttcctga tgtcccggat catttcctgg tatcatcgta tgaggcttat aagtctttgc 1740 gagggattct caccaacaag gcacctggac cggatgggat cccagccctt attctgaaaa 1800 tgtttgcatt cgaactgtca cctatagtag ctgagttata caacacatca ctaaaggaag 1860 gtcacctccc gggtctgttg aagtcggcca acgtgcgccc cctgcctaaa ctgagccctc 1920 ctaagagcat cgaaaccgac atacggccga tctcactcac atgtcatctt gccaaagcaa 1980 tggaaggctt cactctatcc agatcacttc caggtatcgt gcaacaccta gacacgaagc 2040 aatttgcggt ggctgggaaa tcgtgccaac acgctattgt gtacctcctg cacttgacac 2100 tagaggcttt agaccgaggc ggcgtatggg tgcggtggtt ctttgctgac tttaagaaag 2160 gatttgacct aatagaccac cacatcctgt taaataagct ttgtagccta gatatccacc 2220 cctgtctact caggtggatt gcttcctttt tagaaggtag aacccaggta gtaagcatag 2280 catcctcaac atcaccacca ctcaacctca atggaggaat accacaggga acacgtctag 2340 gtcctattct attcgcagtt atggtcaatg accttatccg ctgctggctt ccacgcgcga 2400 agttcgtcga cgaccttaca gctattgaaa ttattcccag aaacgcgcca tccaccttac 2460 catttatagt atcgcaggtc cagtcgttcg caactagcaa taatatgtgt ctgaatccta 2520 caaaatgcaa agtaatggct gttgattttt tgcactataa tagttttcaa tgtcctccta 2580 ttgcgaccgg tggcaccatc ttagaagaag tcaagtcctt taaatttctc ggggtcttca 2640 ttactcacga cttgacgtgg gaggtacatt gtgactctat agtgaaaaaa gcaaaccggc 2700 gcctgtatgc tataaggcag ctaaagcgct gtggcgtgtc tactgataac attatagtgg 2760 tttatcgctc ccttgtgcga tccacgctcg agtacgcaag cgtcgttttc gcagacctgc 2820 cacgctacct ttctgattca ttggagagag tccagaaacg cgccctcgcc attatctatc 2880 cgggcttgga ttacaaggaa gctctaacta gggcaaacct agccaccctt gaagatcgtc 2940 ggactgatgc ctgctgcagg tttatctctt gtttgacgcc acaaaatcca gtgtaccggc 3000 ttgtgcaaga ccgcattgag gctactaccc atagctacca gttaagaacg cgcactggca 3060 atcacatcaa accttttgcg accaatagat ttggcaactt tgtcacaaac aaacacgcgc 3120 tggccttggc tatctgactg cccatactac ctttatattt attatattgt atcaattaat 3180 cattatttat tatatttgat attggaatcc tgtaatttag cttttaaggc tacgagagga 3240 ctaataaacg agtattatta ttatt 3265 // ID Tx1-2_NV repbase; DNA; NEM; 5310 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Tx1-2_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5310 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5310 RA Kapitonov V.V. and Jurka J.; RT "Tx1-2_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 662-662 (2007). XX DR [2] (Consensus) XX SQ Sequence 5310 BP; 1994 A; 1362 C; 1020 G; 934 T; 0 other; tccgtataaa tcccaaaaaa tcaagcacta aaccaagcca tcacggctta agatttataa 60 gaatcaaaag ttaaagaact caggcatctg ctgaggtggg tatttttacc ctaaagccca 120 tcacagcgga gccaggttat aaaaggtgaa gtctggccct cggcgtgaag accgccatgg 180 ccgcggatcg ccgggccaga tccctagtct tcaagaccca aggatccccg gccttgggag 240 acatcaagca ggcacttatc aaggaaatcg gggaaggaaa aatcaacgtg attcaagaac 300 tgaaagttgg ggagttcttg gtagagctga aagaagaacc actagttgaa cggcttatcg 360 aagaaggctt cgacatcgag tcgcaacacg tggcgtgtca cccgcctcga ggatactaca 420 caagtgtctc gattatgggc cttagggcct atgtagacga cgggaaagta attgagacat 480 taagaaagca cggagaaatt aaaagcgatg tgataagact aaaatacaag gtcggacacg 540 agctagaggg cctggagaac gggaataggc tggtaaagat ggttttgaat aacgcatcca 600 ttccctattc cctcaagatc gacgacgaat ggtgccgaat cattcactcc aaccagcaac 660 tatattgtat ggagtgctct gatttcggac acacaagaag aaaatgcccc aatatagagt 720 gccgtaaatg caaagaacgg gggcatatca gctttgactg ccccaaacac gacgagacta 780 ccaacacaaa tgaacagaaa gcaccgaagg ggaatacaag cacggacgaa gcgaacacaa 840 gcgccggaga aaacaccgaa tacgcacaga acatgaacac cgaggaggac tcagaactgg 900 gtactcagaa cacaccaaca ttattcacac caacagacga ggacgagaca caagatgatg 960 agatgggcga agagagcaac gcgacaggac aaaagagaac gcacgatacc acaacaacag 1020 actccgacca ggaatacacc gtagtaagcc accggcgaaa gaaaaccagc caaggcggaa 1080 taaaacctac acaagcagcg aaaaacggta aaaccaatca aaaaattact aatgtatcct 1140 aaacgaactg taaccttttt tattcttatc ttagcaataa caatgcctag cttagtttca 1200 attaactcac acgggctgag atcacaagac aggcgcgcga caacttttag ctcacttaga 1260 cgaaacagat acgacataat tttactacaa gaaacccact ggactgacga gatacaagac 1320 gatattcttc gtgaatggaa cggagatatt tattttagca acgggacgaa ctcagcacgg 1380 ggtgtcgcaa tactgctaaa tccacggctg gattataacc tcacacaaac caaacacgac 1440 accacaggac gcgtgatcaa cattaccata gaactagaag accagacact atgcattacg 1500 aacatatatg caccaagaac agatacagaa agaaaacaat tctatttaaa cctagaccca 1560 tacctagcaa ccaaaaacta taacattatc ggaggggact tcaactgcat cactaacacg 1620 cgcctcgaca agctcggggg aaaccctgat gcaagacaga ccgcgaatac tgaactatac 1680 acgatcgcag cgaaacatga tctaacagac atctggcgag acagaaaccc tgacacgaga 1740 ggctttacct ggacgggcag acatcccaca gacaacacta taattagaac acggattgac 1800 aaattcatgg taaacaaagc gatgactcac gtaattacta acacggagat aaaaccctac 1860 gctcactcag atcatgactc aatcacaatg actctagact ttggacaaca aaaacgcgga 1920 cccggctact ggcactttaa caactctcta ctaacagacg cacttctgga cgcagaaata 1980 cagcatttct ggacctactg gcttacacgc aaaaacgatt acgacaatcc actaatctgg 2040 tgggacaaag ccaaacaaca cttcaaacga atatcaatta aacacagcac agcacgccgc 2100 aaaacacaaa gaaacgaacg ctcccagctc gagcggaact tgataacact ccaacaaaaa 2160 gcagcgaccg gaaccgaaca ggatattgaa aactacctac tagcaagaca gaaactaaaa 2220 cggtttgacc ttgacgactt agaagcacta aagatacgaa ctaaactaca agcgacagaa 2280 gagggagaaa aaagcacgcg ctatttttat tcccttgaaa aacgccgaca agccgaccag 2340 acaataaaaa tactaacaaa agacaacctt gatacagcaa cggaaccact cgatataatt 2400 acagaaacat acaattttta caaggaactg tataccgcag acgaaagaga cgaacgcgct 2460 caagacgaaa tttttaacac agagatacca acactaccaa acgatgcacg agaatcgtgc 2520 gaaggactca tcacagaaaa cgaactgaaa acaaccttac tgaccatgga gaacaacaaa 2580 tcgcccggga tagacgggct aacaacaaac ttctataaac actactggta cctaatcgga 2640 ccggaaataa cgaaaatata caactacgcc tttgaacacg gaacactgac agtcacacaa 2700 cgccgaggaa tcattacatt actatttaag aaaggagacc gcacaaaact aaaaaactgg 2760 cgaccgatca ctctactaac aaccgactac aaaattctga cgaaagcact agcaaacaga 2820 ctcaagacag tcctaccgat gataatcaga cccgaccaaa cggcgagtat accgggacgg 2880 accattaatg acaatacaag actcataatt gatgcgataa catacgcaaa cgagacgaac 2940 aaaccgctag cactgatcac gatagaccaa ctgaaagcat ttgacagagt atcacactcc 3000 ttcctgtttg agacacttga gaaattcggc ttcggcccgc aatttcttaa gtggattaga 3060 ctgatttata aatcggtcac cagctccgtt aaatctaaca gctggttgtc cgcgtttata 3120 aacctcgaac gaggactccg ccaggggtgt gcgctcagca tgccgctata cgtactaaca 3180 gccgaaatca tggcgatcca tattcggagc aacacaaaca tacatggact acgaccgcca 3240 ggcgcaagca acgaagttaa actatcacaa tacgctgacg acaccacgat actgcttaca 3300 gacgataact caattacgga gactttcaaa acactagaac tctacgaacg cgcctctggt 3360 gcgaaaatca acataacgaa atgcaaaggg ctgtggtccg gcgccttcgc acacagaacg 3420 gaccaactcc atgactttga ctggtacaac gactatatac cagaaaaagt actaggacta 3480 tacatcggaa acgccgactg gactcagcga aacatagaac acaaaataca gaaactaaac 3540 aacaccattg acgcatggca acaccgcgac ctcagttaca aggggaaagc ccttgtcata 3600 aacgctctac taacatcaac actctggtac cacgcgacaa atataacact acccgactgg 3660 gcgatacatg acatcgagag ggctatatat cgcttcttct ggagcgataa acaccctctc 3720 gtaaacagag acgtactagc tctacccctc tcggaagggg ggttcaatat accgcgactg 3780 aaaacaaaaa tacaggcact acgaataaac acagtcaaac gactactcgc acccgggaca 3840 gcgcactgga aacactttac ggcgcacttc ctacgaatct ccgatatgaa actaggagta 3900 cgaacactag cactggacta tacgctccaa caaatcaacc gtgacatacc gagttttcac 3960 aaagaactac tgacggcatg gcacggctac cagcctaata caatacgcac atgcacacca 4020 caaacactca cagacatact aaacgaaccg atactacgca acccactgat acaagcaaac 4080 agcaaaccga tattccacgc aaaatgggca tcggctggac tgattcaact aaaagacata 4140 tgctacgagg taatcccagg attcctacct ccaactgcta tacacgagat actaactgaa 4200 ggtgacgaat acggaccacg cacgctacta cagacgacac gcgaaataac acaaatactc 4260 gacgcactac caccaagatg gaaacagatc atcatacgac cgccacgaat agcaacaaca 4320 caacgaacaa tgcaaccttg ctttaacgtc caaccgacta tcccaggtaa cccaccgata 4380 gagcttaaca acatgaagac cagacatttt tataaaacac taagacgatc caaggagaca 4440 gagataccgg cgctgaccta ctggaaacag ctacttagac cggaaccaac attcaacgcg 4500 agctactgga aaacactcta ctcacccctg acaaataata aacaaggcga taccaactgg 4560 aaactgaccc accgagtcct cccgactgcc cagtcgcttc accgcatgac agtgtacaac 4620 acggatcgct gtcaccggtg cggaatgaca gagcacatag aacacctact aatccactgc 4680 cccgaggtga cagacctttg gacacgaata caactataca cagacaaaat gaccgacaac 4740 agactgaaac tcaccaacaa gatcatacta ctaggcttta caccagacca acaagacgac 4800 tacagcaaaa caacgaccga cctaatcaac tggaccctga cgactgctcg ctgcgcgata 4860 cacaaatccg cagtcgacta tagagtgcga ggtatcacaa cccccccgtg ggctatcttc 4920 gcctctgttg tcagagaaca cctaacacac gcccagaaga ccatgaaaat acgacacgag 4980 acggaaaact ttcaactgac atactgcata ggcgaagccc tagctagcta tagcaatggg 5040 aaaatcacct tccacatata attatataaa aatcaaatga taacaacagg aaaactatgt 5100 agaacataag tatatcaaaa agaattatgt aaaaaaaaaa tgtatatata tatacacaag 5160 aaacctacaa agaaatgtaa acggcagaaa aacaagacca aataagttac acaagaaaga 5220 aaaatacaac aataacaaca tgtaaatatt atctttattc aataaaaagg ctcacctgag 5280 ccatattaga aaaaaaaaaa aaaaaaaaaa 5310 // ID DNA-10_NV repbase; DNA; NEM; 269 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-10_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-269 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-269 RA Kapitonov V. and Jurka J.; RT "DNA-10_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 383-383 (2008). XX DR [2] (Consensus) XX CC The DNA-10_NV consensus sequence contains terminal and CC subterminal inverted CC repeats; target site duplications are not clear. XX SQ Sequence 269 BP; 53 A; 55 C; 73 G; 88 T; 0 other; gggggggggg ggggggggtt cttcccatgt cgacctgata gggatgctcg tcgtattttt 60 taggggtcaa aatcgggcct caggtatttt ttagggggta tccgagaaaa aaataggctt 120 ttctcttaga aatggtattt tttaaggctt ctgaggtatt ttttagggta gcaatttttg 180 gtcgtgcagg tattttttag gggtattttt cgaatttccc gacgagcatc cctatcactt 240 ttaccctgaa gaaccccccc ccccccccc 269 // ID DIRS-17_NV repbase; DNA; NEM; 1177 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-17_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1177 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1177 RA Kapitonov V.V. and Jurka J.; RT "DIRS-17_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 411-411 (2007). XX DR [2] (Consensus) XX SQ Sequence 1177 BP; 328 A; 295 C; 246 G; 308 T; 0 other; attccaggca ttctgaacac agaagcagat cacgaatcca gggtgtttct ggattcgagc 60 aattggaagc tgaacccaac actcttcaac cttttgtttc agatgtgggg acccctagaa 120 acagacctgt ttgcctcccg gctgacatat caattcaacc agtttgtgag ctggagacca 180 gaccctctgg cgacattcac tgatgcattc agcctggact ggagcgggtt cagcgcttat 240 gccattactc attcgccctg atcggcaggt gcctacagca aatgcggaga caacaggtca 300 gccatctagt acttgtatcc caagtgtggc cagcacagcc ctggcatccc ctcctactag 360 acttgttcat agattaccct caactacttc ctctcaggat agatttactg actcaggacc 420 acaaacctca cccactagaa cactttcaac tagctgggtg gcttctaata acagagattt 480 ccaggaggca ggcatttcta tttagagaac tcctccttgc agcatggcgt aaaaacacca 540 gtgatgtcta tgcctctgca tggtctaaat ggtgtagctg gtgtgattaa agggtcatca 600 ctgcaaatcc ccttttcacc atctatgacc aagatactct atttcttatc aacccagttg 660 atgaggggag ggaatataga tctattaacg tatatcgttc agccctctca gccgtccttc 720 tcccaattga cgggtacaag gtgggctcac accctttagt ttgtcaaatg ttgaaaggaa 780 ttttacaaaa acctcgctac actgtgggat ggaatgtggc aaaaatggtc caatacattg 840 caacctaacc cgaacagaac gatcattggt cttttaagct cgcagaacta aaaaaaatgt 900 caaaacaggg caggagtcat gttttcatgc agattttcca gatgaaataa acctttctgt 960 ttttgaatgc ccaaggctat ttgaagctag agaaaaagaa tggcgcccaa aaggcccctc 1020 tgaaccaaac aagcttttcc tgtcgtttat aaattcacaa aaacctgtgt cctctgcttc 1080 ttcagccaga tggttgaagg aactcatgca actttcaggc attgacacca gtatctttaa 1140 ggcacattca gtacgttgtg caggggccac tgaggcc 1177 // ID DNA-3_NV repbase; DNA; NEM; 497 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-497 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-497 RA Kapitonov V. and Jurka J.; RT "DNA-3_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 398-398 (2008). XX DR [2] (Consensus) XX CC No clear target site duplications. XX SQ Sequence 497 BP; 116 A; 121 C; 103 G; 157 T; 0 other; gggggggact ctccagaaaa gtagacgggg gtgctcgacc tatcttttag ggtataaaat 60 tcttaccaac tgctatctct tagggggtgt tttaggattt ttccgattct gctatctttt 120 aggggttttc acgcccgggg aggaggattt ttccgattct gctatctttt agggtgtctc 180 acgctaaatg gtggcccaat cgctcgaaac gtattttaca ataaaccaca agtcaactga 240 tcggttaata ctttcgactt tattgtcggt aacataacaa tacaggatcc gtcagccaat 300 taaaacgggc attgtttttt taatgctatc tcttagggtt aaaaattcct tcgaccacac 360 ccaatttgct atctcttagg ggtaagaatt tctgttgacc acgcccaaag tgctatccct 420 tagggttaaa attgattttg ccgacgatca cccccgtctg tttttatcgg agtccccccc 480 cccccacctc ccccctg 497 // ID BEL-12-LTR_NV repbase; DNA; NEM; 392 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR of the BEL-12_NV autonomous LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP266; KW BEL-12_NV; BEL-12-I_NV; BEL-12-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-392 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-392 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-392 RA Kapitonov V. and Jurka J.; RT "A family of BEL-12_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 392 BP; 95 A; 72 C; 84 G; 141 T; 0 other; tgttgtcgcc attatccggg ctccctgtgt tagaggcctg gttccgagct ttgcgcggtc 60 gcatagcctc gtgcaaaacg ttttcagttc gtcgagaatt tcctggagtt ttttattgga 120 gtttttgacc tgaatctaat gaatattgta tggatttgtt tttggatgga ttccgcaccc 180 gtgtaagtat catgcgtttg tataattagc ggaaattgcc ataattttca tcttcagtat 240 ttgtttattt cagcgaatct cgtggtaatt cgtgataatt ttgaagttga aactcgtgta 300 gaactttacc cgtgaatatc gacaagtgga aaataaaagt tgtgttcata tccagaagca 360 tctcatctat ctgacctatc tgaattccaa ca 392 // ID Harbinger2-1_NV repbase; DNA; NEM; 4548 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 09-MAY-2011 (Rel. 16.05, Last updated, Version 2) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger2; Harbinger2-1_NV. XX NM Harbinger2-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4548 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1217-1217 (2010). XX DR [1] (Consensus) XX CC Harbinger2-1_NV belongs to a novel clade, Harbinger2, of CC Harbinger DNA transposons. This clade includes transposons CC present in protozoan (brown alga), fungi, choanoflagellate, and CC metazoans. CC Harbinger2-1_NV is a consensus sequence of a family of autonomous CC Harbinger transposons that were active in the Nematostella CC vectensis genome in a last few million years. This transposon is CC probably still active. Some copies are >99% identical to each CC other. The Harbinger2-1_NV transposon is characterized by 28-bp CC imperfect (3 mismatches) terminal inverted repeats, 3-bp target CC site duplications (TNA), and it encodes two proteins: (i) the CC 358-aa Harbinger2-1_NV1p transposase and (ii) the 244-aa CC Harbinger2-1_NV2p Myb-like DNA-binding protein. XX FH Key Location/Qualifiers FT CDS join(241..903,1350..1757) FT /product="Harbinger2-1_NV_1p" FT /note="Harbinger TPase." FT /translation="MASFKEVRDLLLLEHSNGLISDDELLFFMGEYQSKNP FT EFTYDIYERFNLDDMEEPECKAYFRFEKNDIPVLAETLGLPDFFKCTQRTV FT AGKIEGLCLVLRRMAYPCRLGDLIPVFGRPVPELSMIANCVLEEIYDLHAH FT RVSQWNREILSPVQLESYAEAVHRKGAALDNCFGFVDGTVRPISRPVESQE FT VVYNGHKRVHALKFQSVTLPNGLIGNMFGPIGRRHDASMLGESGLLQDLER FT EAFSTGGQPMCIYGDPAYPMRVHLQAPYRGNGLTPAQQAFNDSMCKVRTSV FT EWVFGDIVRSFKSMDFKNNLKIGLSQVGKMYIVCSIIRNALTCLYGNNTSQ FT YFDLDPPTLQEYFG" FT CDS join(4377..4357,3443..3105,2632..2267) FT /product="Harbinger2-1_NV_2p" FT /note="Myb-like DNA binding protein." FT /translation="MASATQLDSPMEWTTPHDAALCREVLLQNPYTERKKT FT TQRAKIWQTISERLAVLEKPKFKSTIGKRAVQDRVMLLVTKFKRRMAAERR FT ESGINPTMSEVDTMLEEIAAREREADLLRETEDGSKKKVEQEKAKGEEIRK FT RAMEKLGDTKKREESASKKSRRSGSMMVEYLKEKNEKDRAIKERELELHER FT KEREDSQRHDTILQLIQQQQQQQQQQQQQMQLMFARQNEMMIALMQKFVSK FT D" XX SQ Sequence 4548 BP; 1348 A; 882 C; 798 G; 1520 T; 0 other; agagagctta agcaccaggc gttcttgaca acacgaacgt ggggaggtcg cgcaggggct 60 gagtctagga cggcgttttt ggcgccattt tttatgttta agcgcgcgta tcaacgcgac 120 cgagggcggc cgaagcggga aaatttaaaa ataaaacatt gaaacattgt aacaacagtg 180 aaacatttta attataaaca aagctgaaat tggagtcttg tcctgtcgtt tactaaaaat 240 atggcttcgt tcaaagaagt aagggattta cttctactag aacacagcaa tggattaatt 300 tcggacgatg aattgttgtt ttttatggga gagtatcaat ctaaaaaccc ggaattcacg 360 tatgatattt acgagaggtt taatctcgac gacatggagg agccagagtg caaggcatat 420 tttcgattcg agaagaatga tatccctgtt ttggctgaaa ctcttggctt gccggatttt 480 ttcaagtgca ctcaaagaac tgttgctggt aaaatcgagg gtctctgtct ggttttgcga 540 aggatggcct acccatgtag actcggcgat ttgattccgg tatttggtcg ccctgttcca 600 gagctaagca tgatagcaaa ctgcgtcctc gaagaaatct acgacctaca tgcacaccgt 660 gtgtctcagt ggaatcgaga aatactcagc cccgtccagc tggaatccta tgcagaggcc 720 gtccatcgaa aaggagcagc acttgataac tgtttcggat ttgtagatgg cacagtgaga 780 ccgatttctc gtccagttga aagccaagaa gttgtttaca acgggcacaa acgagtgcac 840 gccttgaagt tccaatcagt cactctgcca aatggactca taggcaacat gtttggaccc 900 ataggtttgt attttatttt attccactaa gagtggtttt caaaaaccca tgaaatacta 960 tttagtttat ttagtactaa tacactgtaa tgtctttgtt ctcttttgtt cttgcttgac 1020 tattacactt taattcattt tctatttcgt tttattttaa gttatatttc ttttttaaac 1080 atcgttttat ttaatttcac ttttttattc aattctactt cacttcattt tatttcactt 1140 aggtttattt cgttttactc aattattttt catttcattt tactgtattt tctattttat 1200 tgaaaaacca aaacaataat agcaataata atagcaacta taatttttgt gtgataaacc 1260 cacaaccttt tcctgaaccc ataacagaaa atgtgaaaaa aatgcatgct ctaatttgtt 1320 tttgtttgta cttttatgta ctcatagaag gtagacgaca tgatgcgtcc atgcttggcg 1380 aatcaggcct gctacaagac cttgaaagag aggcattttc aacaggagga caaccaatgt 1440 gtatatatgg ggaccccgct tatccgatga gggttcattt gcaggcacca taccggggaa 1500 atggactgac tcctgcccag caggcattta atgatagtat gtgcaaagtt cgcacatcag 1560 tagagtgggt gttcggtgat attgtgcgat catttaaatc tatggatttt aaaaacaact 1620 tgaaaattgg actgagtcaa gttggaaaaa tgtatattgt ttgttccatc atacgtaatg 1680 cccttacatg cctgtatgga aataacacat cccagtattt tgatttggac ccacctacac 1740 ttcaggaata tttcgggtga aaaatcttgt tactgtaaca gagacgaaat atttttcatt 1800 ggttaatttt gaaaggtatg aagtataggc aagatgtcag tgccaactta ttttgatggc 1860 aacccaagag agtaacaaga tttttggcca agcactgggc aaggacaata atggaccaat 1920 gttagtattt taattttgtt ttaaagaaag aactcaccat tcatgaattc tgaggtgtac 1980 ttgttttatt ttcttctgca aagtcaagca atattttcat atgtagattt gtttttcatt 2040 taaatatatt tacaataaat ataagacatg ttgaaaggat aaacctaaaa atatatactt 2100 aaacttattt attcagactt tcattttttc agacttggta tatatccatc aaattatcaa 2160 agtaaaagaa ttcaccaaaa cacttctgtg gtttttttgc tgttctgata aatatataaa 2220 acttcattta aaactttatt gaaaccactt tatataataa agattaatct ttagagacaa 2280 atttttgcat tagtgcaatc atcatttcat tttgcctggc aaacattagt tgcatctgct 2340 gctgttgttg ttgttgttgt tgctgctgct gctgtatcag ctgaagtata gtgtcatgtc 2400 tttgcgaatc ttccctttcc ttcctttcat gcaactccag ctccctctct tttattgccc 2460 gatccttctc gttcttctct tttaggtact ccaccatcat cgatcctgac ctgcggctct 2520 tcttacttgc agattcctcc ctcttcttcg tatctcctaa cttctccatg gctctttttc 2580 gaatttcttc ccctttcgcc ttctcttgct ccactttctt tttgcttcca tcagctgttt 2640 aaaacatcca tttagaatta gatgcaaaac ctcatatttt taaccttata ttttatgtgt 2700 taaaaatttg taaaataagc tgctatgaca acttttataa tcttttaatt tcaattctga 2760 agatattgtt gcccatattc tagcagaccc attcactgga ttttgagcca ggagaagggt 2820 acctattcaa tagaccattt ttttacttaa atttttttca ttcacttaaa actgctaaac 2880 atcaataagc tattagcaag aacaacagta ttttccattg gctcttattc cctctttatc 2940 agtcacaggg tacagatcca ggattatttc atgattttgg cagttgcaac acacaaaaac 3000 aaggtgaatc ttccactctc tttttatagc tgtttttctc tcataaagac gggttgcaac 3060 ccccacaacc ctgcccccca gacttaagat atatgataaa caccttcagt ttcacgcagc 3120 aggtccgcct ccctctctcg tgctgcaatc tcttcaagca tggtgtccac ctcactcatc 3180 gttgggttta tccccgactc tcgcctctct gctgccatcc ttcttttaaa ttttgttaca 3240 agtaacatga cacggtcttg cactgctctt ttaccaatgg tactcttgaa ttttggcttc 3300 tccaggacag ccaacctctc acttattgtt tgccagattt tggccctttg cgtagtcttc 3360 tttctctctg tgtaggggtt ctgtaaaaga acctccctac acagagcagc atcatgtggt 3420 gttgtccact ccataggaga atccctaaaa tgatatggct atagcttaaa gaaacactta 3480 cagaaaaaag tcggtcaggc tctgtttgta caaagtacaa atatacaaat tttatttgct 3540 tggtgataaa atgtattata cctttagact gggatttctg catggtttat gcaaatatcg 3600 agatatatgt gaaagacata aatatgcata tatttcatta aaaaaatcaa tgaagcttat 3660 tttatcataa ttttcttcag caactatttg ttcaccgcat gagcaaataa aaaaaacctt 3720 aactctttgg aaaacaaaca aacaattgga ccagctcatg taattttttt tattttcttt 3780 ttattttgca agtgaaaaaa ttaattactt ataagttact taagcttata gtgagtaaat 3840 aatttcgcta aatgtctagt agtcgaaatt aattcaaatt aagaaacctg tttgtccaat 3900 atactagaca ttgaatttac cggtgaatat tctttctttt ttctaaacta aaaggaaaac 3960 gttttctgta tcgtaacaaa aaagtatcaa cacacaacgt aaacacggga tgagcaaaaa 4020 cacgccactc ggcgtgagta aagtgaagag aaaattccgt ttgtttagct tccacggtag 4080 tttaataata catatttatt attattatat cgagagccgt tatttttaaa ttgggcaggg 4140 ctctaacttt tctcaagctc ggaaaaatag tcgctcaaac aaacaaataa gtatcggact 4200 aaactgtcat cggggactag ctgaaaaatc tcggcaccaa gctcgttttt ttcttattac 4260 acaagcaaat aaatgcacag tcttttagat aaacaaataa tgtagttatt tgcagcttaa 4320 taaatcgcag aataatgaca gaatatgtac ttacgcgagt tgagtagctg aagccatcgt 4380 cccttatgta aagagtattt gttgacaaat cgcatacggg aaaaaagctt ttctgaggtg 4440 agtgacggga ggtcacggac ggctgggcat gcgcagtaga tacaccacgg aaaaaaatac 4500 ttccggtaga cgtccgtgaa tcaaaaacgc cggatgctta agctctct 4548 // ID DNA-9-22_NV repbase; DNA; NEM; 1028 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-22_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP55; DNA-9-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1028 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1028 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1028 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-22_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP55 unclassified CC DNA transposon [1,2]. XX SQ Sequence 1028 BP; 339 A; 185 C; 174 G; 330 T; 0 other; accgcggtga tcctagatac taatccctca gatactaatc agatactaaa cagatactaa 60 aaacggtcag ggggggggac ttcataaaaa aataataaaa aatacctatt taccgagtaa 120 aatcagctag aatcgatgaa aaggcattat ataaatatgg tttcttaaat tatttacagc 180 aacttctgta atttgtgtgg atcctagact aatgtctgat tagaatatct tgtctggttt 240 ctggtttaga cgcttgcaaa tttctatgca atacacaagg aaatagctat aatatgcatt 300 tctaaaacgt ttctataccg atttagcgct aagttattgc taagttttca aacagcaaac 360 gtctactttt gtactttttg gcgccgacat aatgaatgtt gtcgacggtg aagaccaccc 420 aagtggaagt cacgcttgga tcacgcgctt ggacgtcacg ctagctacat caactacagt 480 aactgctaca tcgcaacaat tacggagagt taaatataaa ctggactcga attgaccggg 540 ataaaatcaa atcatccgaa agaaggggat tttttttcct tttgagatct gcatcaattt 600 tttggaccag tttctgatct gttcaaacaa acaaacaaaa aaaaaaagaa agaaagaaaa 660 aaatgttcct acctagctgc tatttatacg aacaaatcca aattcgttcc cccgtatttt 720 ttattcagtt gtattaaact atgtgtatgt gtaggatcgc cttttgaata tttcacgcta 780 gtgatgactg aaatagaaat ttagcctaaa tccgctaaat agcgcaaaaa tcgctgtaaa 840 ataaatattt tgacgtattt ccagccgtac tctctaattc tatgcagaaa ataggtaatt 900 ttgaatattt ttttgttatt aacaattacc cccccccctt gctattagtt tctgtttagt 960 atctgtttag tttctgatta gtatctgttt agtatctaag aaattttagt atctaggatc 1020 accgcggt 1028 // ID DNA-TWA-1_NV repbase; DNA; NEM; 939 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TWA-1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TwA TSD; KW NVREP483; DNA-TWA-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-939 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-939 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-939 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TWA-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~93% identical to the consensus. TWA target site CC duplications are supported by data from insertions into other CC TEs. It was reported originally as the NVREP483 unclassified CC transposable element [1,2]. It may belong to a novel superfamily CC of DNA transposons, which is not identified yet. XX SQ Sequence 939 BP; 281 A; 229 C; 187 G; 242 T; 0 other; tgcacctatc agcggcttgc ccgaggggtc gacccccggg gataccacgg ggattgtaaa 60 attggagaaa caatctcaat gatttccccc tggggaaggg aatttttcat ctacaaagtc 120 cccttgttag gttctttttg cattgcaatc cccctgctat ctaacagttc ctagaaggtt 180 gacaatataa ttcaccttga agttgagaca taccttgact tgtgatgtag gagttggaga 240 cttcccatga aacacgtcaa cttgacaaac ttttccccgt agtcacatgc caaattccat 300 gcacttttct caagaaatta tgggtgatat ttgcttattg ggtgcccttt ttgccagaca 360 agcatttcta attacatgcc tgaacacacg agactgctga taaaaactga gtgctaaaag 420 tgctgggtgc gcatttatag ttgaaacaca aaaataaatt cgacagcata gaacaattta 480 tttaacacac ttgctgcaaa aaaacttgtc aagcagctct gcctcctcct ccccaatgtc 540 aatacactcg attttactaa acttttcgac ttcaaatcag gcagacgagg atgaaagagg 600 acgagcggta atcactgtca cgtgatatta aacgcgggaa aatacaggga gcccgaacat 660 ttagttcaat atttttcttc aaatatggcg gcaagcttgc gtccacgcag ataaagggct 720 tcaaaaccaa ataatgacat tgacggcggt acccaaatat atttttgttg acaaaagaag 780 aaatacaaag tcatgacaat tcccccaccc aaaacttgtt tcgcaaatac aaagtcgagt 840 atttgcccga ccccaggggc catatctacc cgccatcccc ctgatatccc ccacatatcc 900 ccgggggtcg acccctcggg gaagccgctg ataggtgca 939 // ID DNA-5-1_NV repbase; DNA; NEM; 3208 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-1_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3208 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3208 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3208 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 3208 BP; 1057 A; 718 C; 516 G; 917 T; 0 other; cagtgccgta cattactatt tttggttata tcgatttacc tacttattat gcaaatattc 60 aaaatggccg cgcggagttt gaaacttgaa tttgttttgt tagcgagacg tcgcatcgca 120 aaaatcgacc aaaacagcaa aatatcctgc tctataccaa gtttgatatt tgattgatga 180 gttcctgtgc tcgaaagtaa aatatcgttt gggaaacctt ttcaaattga gcgcttttat 240 tggagactgc cgtaaaatcg aactcttttc gtaatgttta cgtttagaaa aagagaaata 300 tgagtgtgat ggaccaaatt ctacggctta gaaccttgac aggactaaac taggataaat 360 gaggatcatg gcatactaaa acaattttca ccacaagccg aaacgagtgc ccacagggta 420 tggtgaaagt tgaggagagc ggaggttgaa ttgtgaggac gaaagtgcga gtcaaggccc 480 aacgtctata caacagggaa aaatcgccga agaataggta tgaaaattcg tgtcaacatt 540 tagccgaaaa gcattttacc ctacccttgt ctctcggggg ttcgcttctt atcattcttt 600 agctaaatgt cttgccctgc gaccaccaca acaacatggg gggggggggg cactctagct 660 gtaaacatga ctgttggttc cgacagatac gaacatttta tgcccccaaa agaatggaac 720 cgcgccaccc ctaagaatat acctgcatct gaactctata cccaaaactc caccaagaat 780 agatagcccc ccccccttcc ccccaaaaaa gtaacccaaa tctgagttct attcgtaaat 840 catacaaaag cttgaaactt gccagtcccg taaaaaagtt ttagaaggaa aatttgctta 900 tcaaatttaa tttattttta ttccctttta taaaaaaaaa ctctatcctc ctcacctcca 960 aggccctagt catcaaaccc ggtacaattt tacttccttg tcttcgcacc ttgtgtgagc 1020 acaccacatg tgacatgccc tcagtcatca caacctcact ccccttacca tgcatttctc 1080 aacctttaat tttacactct atgccttttc ctatttgtct gcacacacca taaaatagcc 1140 ctcattgagt aagcgcatta catagccact caaaccagtg ccccctctaa aatctaatgc 1200 tagaggggca taatatgtta aaataagcat ttgcgataag aactttttga tgaattagcc 1260 ccccccccta ctcatcctca aaaataccca aacctgagtt ctatacataa aatataccaa 1320 gcatagaaac ttacctccca aataaataac caaacctaaa ttctatagcc caagcataca 1380 aaatcttgct ataagggagc ttcaactctc agatttgctt attaaataaa atcaatttta 1440 ttccattttt ataaaaaaga caacaaacaa actctgtgca ataggcactg agataaaaaa 1500 tgctcctgaa gtatcaccaa atataaatat ttattttcca tacagtatga tatctatgac 1560 tgcacaatca tactcctaga atctccaagg cctagtaatc aaacctggta caagaggggt 1620 aaaaagaagg gcataatatg ctaaaataag catttgcgat aaggactttt tgtcaaatta 1680 gccccccccc ccccaaaaaa aaaaaatacc caaacctgag ttctatacat aaaatatacc 1740 aagtatagaa acttacctcc caaacaatta ctcaaaccta tataccccaa acatataaat 1800 tcttaatatc actatagttt taaaggggag cttcaacact cagacttgcc tatcaaatca 1860 aattaattta attccctttt tataaataaa aaaaagactc tttgcgcata taatagagac 1920 tggcgagaaa aaaaataagc ctgaagtatc accaaatatg aatagatatt ttccatatga 1980 tatctgctct agtgaagctt ggagcctctg gtacccaggg tatgactata ctcccattct 2040 cctattatct ccaaggccta gtaatcaaac atggtacaag tttacttcat cttcacaacc 2100 tgtgtcagca cccccaatta gacataccct tagtcaccac ccctttgccc ttaccatgcc 2160 ttttcctcac cctagtttac actttatgcc tttttccatt tgtctgcaca cacaatgaaa 2220 tacaccctca atggctctaa cttggtgtta gaacctgtgt attaagcacg atttgtgtca 2280 caaaacttcc ttttttttaa taaaatgaat catgatgaaa acagagctgg atacaatgaa 2340 gtcctttggg gatggttctg acactgaggt atacatacac ccctcattga ataagcacat 2400 tacatagccc ctcaaacaag tgccccctct agaatccatt tataaaaaaa gccataatgt 2460 gagcatttgt ggtaaggact tttttttaca acgagtaata gcaaactaat gcagcaatga 2520 ataatgactg ccatccctga gatttactga tcatagcaaa tctatttatt ccaggatcaa 2580 atataaacat ttaaacagta ctttcatgta gtgtctttaa attgcataca ataaacagtg 2640 actcgcggcc aatctgtata cgatttagct tcattttttt ttaatgagac tcgctgccat 2700 tctgtataag attcatttta gtttcaatat cccagctaaa atttttcttg gagtgtcttc 2760 attccgagtg cgaaagcaag ataaatccag ggaaattttg tgcatttgta tgacttgatg 2820 aaacgtacaa ctagataatt ggtgatcaat gttatagcct gctagcagtg gcttaccctt 2880 ccgcgttcat tacagtacga ttcggtgaag tcgtaaaaat aaccctgcaa atgaggtctg 2940 ttgccgatga gaaacaacac aaatagggta tatatgacgc actgagtcgg tgaaatccct 3000 gcttaaacag ataagaagaa atcactgcta gcagagagtt aaaaagcggc gttcaacatg 3060 attttcccga ttcaacggaa ccgccatttt gttttcccac tctgagttga ggcgtgtccg 3120 cgtgagactg ggcatagtaa tactcatctc tgattggtta atcagattgt ttatcaaata 3180 taaccaaaaa tggtaatgtt ccgcactg 3208 // ID DNA-9-12_NV repbase; DNA; NEM; 377 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-12_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-377 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-377 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-377 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-12_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 377 BP; 122 A; 60 C; 59 G; 136 T; 0 other; gacaggagca aaaaatggca aagttcaaat tgtaaggtcg tgttagctta tattcgcttg 60 attttttgca tagatgttcc ttgtgtaata taaaacaaaa taagctttag tattttttgg 120 tagataatcc gttcttgaga tattgcaaat tgtaagactc ttgatttgtc tgaaattgcc 180 caatttgggc gaaattgcta cttttttcat gatctatggc aactttgctc aatcatatct 240 caagaacgga tcatctacca aaaaatacta aagcttattt tgttttatat tatgcaagga 300 acctctaggc aaaatataaa caaaatgtaa gctaacacaa ccttacaatt ttaattttgc 360 cattttttgc tcctgtc 377 // ID BEL-8_NV-LTR repbase; DNA; NEM; 648 BP. XX AC scaffold_90; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: long terminal DE repeat. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-8_NV_; KW BEL-8_NV-I; BEL-8_NV-LTR. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-648 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-648 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_90; Positions 683535 684182. XX SQ Sequence 648 BP; 195 A; 112 C; 136 G; 205 T; 0 other; tgttataaac attgaaaata caaaaaagaa cgttgattta aattgaacgg attagatagt 60 ttagacaatt gtttagttga gttaccacgg cttcctctat ttttgagcac agccgccctt 120 tcctatgatt agactgataa gatttattgt agtttacgca tttccctttg agtaacagtt 180 taggaatgag gcacgtccta ctttaggaca cgtcccatct gcctataaat tatagtaccc 240 atttagcaat ctttaagagt tgagcagaga aaccgaagag agaagagttg agttgagagc 300 cagagaagca gagttagaga agtcagagta aagtttgaag agttacaagc ttacttggag 360 ttgtacttct ttaagccccg gagacgaggt cagacgtaag ttgaatttgt aaatattgat 420 ttagcctttt tgcgatttac agaactgcct gtagtcctta ggtttttatc ctaaatttgt 480 gaattgttaa ttacttcata gttgtcaccg catgtgttcg atagttggac gagttgattg 540 taataaacgc tgttaaatca agcttggatg actgttctac actgtggttg acactaaaac 600 gaacccactg cacacttccc acaagtcgct gctttggaac agcttaca 648 // ID DNA-7-24_NV repbase; DNA; NEM; 267 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-24_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP491; KW DNA-7-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-267 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-267 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-267 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-24_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 267 BP; 82 A; 51 C; 49 G; 84 T; 1 other; cacaggtagc ccaagcataa tgttagtgga ctgcaatgta ctatagttag ggcttatgat 60 ataggggttt ttatacctca aaatttataa gaaattctca ataaaattsc acgaaactca 120 ccgtgtggtt agtccgtgat gtccttgatg ctaatgtgaa gtttaaagaa tctaccttca 180 atccacctct ccatgtaaaa gaaaactctt tttgggccta actatagtac attgcagtca 240 actaacatta tgcttgggct acctgtg 267 // ID Kolobok-N15_NV repbase; DNA; NEM; 1109 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP103; Kolobok-N15_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1109 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 354-354 (2007). XX DR [1] (Consensus) XX CC Kolobok-N15_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N15_NV transposon CC is characterized by 18-bp TIRs (3 mismatches) and TTAA target CC site duplications. This family is composed of ~200 elements that CC are ~7% divergent from the consensus sequence. XX SQ Sequence 1109 BP; 340 A; 217 C; 212 G; 340 T; 0 other; aggcccataa gcaaccaagc ctacatcaga tcgaggctct attttagcgc tgcgctaaaa 60 tagaaagtct acaaattgtt tcaaactttt aagaaacctc ttctatcgtt gttaaaatcg 120 cgttaaaatc gtcgatatgc ggctcaaagt tttaaatagt tattacttta tcgttttaca 180 acaatacctg gcaaataatt ctaagattta tctatatgct ggcatttatg cgatgtcata 240 tgaaagcggt tttaccacct cgagccgaag gccgaaggtc acgggaaatt gaagtatgta 300 aaaaggttcg tgaaacttgt attaatcgtt cactgacgtc caagaacaat acagaattcc 360 ttttgcattt tatgagtata tttaacacaa gataagaaca atcttcgctt ttttttgcgt 420 tcgtgtcgat gccagtatct tgcctatagg gaatcttgca cgcattgcgt gataacaatc 480 acaacgacta caaaggaatt tgggtttagt tttcctggaa gtcaaagttt ttcagactct 540 gagccactca ttcacatata gagggaatga aaatagcagg ttcgattcaa aggtgagcct 600 cgatgcaacc ctgaaaatgc aagaggaaca aacaatatgt agaagttttg ccgtgagtcg 660 aatttgcaaa tcatagcagc gaaatatata cttcctatgt gttcggcata tattctcctc 720 gacttctcgc ttcatggtta ttaacctaga gttttaatta caggttatag tacttatcag 780 tgataaaaca aagaatagtt tcgagtttga gtgatcgcgt ggaataaacc aacatctttc 840 ccgatgacat caatctttat ttgtcaatga tccttatcct gaagcacgca ttgcttggtc 900 gtttcttcgt tacgttatgt tcttgtcttc ctaaatactg tggaaacagt ggctgaaaag 960 ctttcttcac cggcgaaaac aagatgaaac acgcacctcg agtgtcggta gtgaataatt 1020 atgcgtatta tagtcctcca atcaaatcgc tcgcaagaca atggcgctat ttcaaaacaa 1080 caacaatcgc tttggttgcc aatggggct 1109 // ID DNA-7-5_NV repbase; DNA; NEM; 3699 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-5_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3699 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3699 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3699 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 3699 BP; 1091 A; 746 C; 745 G; 1117 T; 0 other; cacaggtagc ccaggcaatg gttgcttgtc gtagctcgga attcggctgt tctgagatcg 60 gtcgagtaaa gcgttttttt tttgtgtgaa atgttgtcaa taaaattgcc ttagaactta 120 gaacatgcct tgttgttgtc aaattcacgt gtaataaacg atttgggggg gggtttctca 180 acggaattta tgacttctct ctccctacta aagaaagata caaggttgga ggcgccattt 240 tcggtagcac tcaaataccg tcgaaattcg agaggaaaaa acaacaaact aaatattttt 300 atctcgcaga cctatgccag ggtacactta cattcgatat gtggcaaaac atccgagcta 360 aactattttc cctggccgct agccgtattt taaaacgaga aagtagccac aattatcctt 420 gaccgatgcc gttggacaat tagttacgct tgaccgcgct gggaaggaga gcaaactata 480 ttaccctccc cgccaggtgg gaaaatgtcg cgctcggccg gtctgggaac tagggcaaac 540 tattttaccc tccctaccca agagagcaaa cttcgcgctc tgccattgtt aggccatcca 600 atccgaacgc gagttgacca agactctcca gtggaaaacc cgcgatgctg tcaacggcgc 660 attactaact gtagtagata cggatttcac actttttcac gatctcaaat tcagtattat 720 cagtttgcgg agcgagattg tccggaattc aacataaaca ggtaagtttt aaggtgacag 780 cattttttat ttttaaatct gaagtataaa ctcggccaag acgaacaaca gagaaggcga 840 agagacggac tcagattgca atccttcgaa ttttgtttgt aggtagcaca ctcgaatctt 900 ttgaagactt tcttcacaaa tggaaagcgc gatgtgagtc tcaaaatcgc tgtaggatat 960 cactaggtaa gtaatctgtt atcgtttatt tcagtctaat ttatttgagt tgccctactg 1020 aggagctaaa tgtgtgaatt caaaatgtgt gaattgttgt ttgaaaaatc tcccgttcta 1080 caaaacggtg ctatgccagc agagctaaac aggaaggttt ttatttattt ccaataaaac 1140 aaaatctcta tatgccagac cattacagtt attatcataa cttttcctaa aaaaagttcg 1200 cgccgaagtt ggcaacttct tcattgcgaa cctacttcag catgctttaa gttcgagaaa 1260 ttaccaacat ttaataatct agttttcaca tcacgaaaag gtttttaaga gtactgaatt 1320 aaagtagaag tcatcttgtg ttggaaaact tcacacctgt gacctaacac gatgtgcggt 1380 tctaatatga aatagtactc aaagcgcaac acaagtgaga atcggtaaag cgcaagaaaa 1440 tcaagcagat gcgcttcctc ttgcgcttgc attccagtga gaatcaggaa attacttgct 1500 ctgcgcttgc gcttacccca agtgaaaaac aacctttagt ctattctctc attgcccgga 1560 atatgatata tgtgtcaaag aaatataaaa aaatagaatg attctctatt aaaaatacat 1620 aaatcataat tattatgaaa tttcacggga ggtggttgaa tgcttttcta taccatatat 1680 ttaactggga cattatccga cgggtattta accttcctga tcacagctgt gtgcaccttt 1740 gatgcttgag cagcttgttt gataggtata acttaaacag caggacagca gcagcaggtt 1800 aaatacctgt cagataatgg atgtttaatt tctataaatg aaactgatct agtgattttt 1860 gttgtatgaa catcaaagct agctagagtt atcttggcac tgtgcacgat ttcgtctttt 1920 aggtctttat tagaatatag aaactatgat aagaatgcaa tgcacctggt gctattgcat 1980 tgtgattcct ttagctattt agtaattact tgattataca ttgtatttca gtttacgttc 2040 gtttatcgtc tatcaaaata ctcctattgt aaagattgtc acgaaaaccg cggaataccg 2100 gaagtcctct cccaagaaat acgagaccaa ttgtcataat aatgccgtgg ctatgcaatg 2160 ttttatagcg agaaaaaagt ataaaactaa tttggaaatc cagaaatcat attttcgata 2220 tttcagatgt ctctatcgac tctcggcatt tcagtcgcat gaaaaaacat gacattttaa 2280 aaactgatgg ggatgatggg cactatgggt gtggtcaaca gcaatttttg cccctaagag 2340 atagcaaatc gggtgttgtc agaggggttt ttaaccggaa gagatagcag agtcggaaaa 2400 accattaaac ttcccctaag gaatagcagt atttacacaa taagagaata gcagaattgg 2460 gaatatcatg taaggaatag tagttggttg gaactactat tcaggtcgtt tctcagtaca 2520 ctccagggcg gcgacatgat ctcctctgca tttgaattta gatgttccca ctcatttaca 2580 aactcggctg cttgcccttc gtctaaaaac tgtttttttc taaggccagg gtacccttgc 2640 tcccgaacat aattaatcat ccttttcaca cactttacgc cgaagacttc gtcaacggct 2700 ctttttacta cgacctttct tgcaggcgct atgttttcct tgttttcttc tgtatagtgg 2760 tcaataatat cgtttaattg tgcaaagctc tttttgctct tctcataatt tagcatgacc 2820 cttcaataga aatatagata tcaaaatgtg aatataaata ttcaaaagtg cttgcacagg 2880 ttcgcaccat gtaactgaaa tacgagtttg aaaagaatca ctcttaccat gttttcgctc 2940 cagtaaattc cttcacgact tcagcctttt tggaagtagc gcttaacctt tcatcgtttt 3000 cattagatcg tttaaggccg ccaagaggat taagtttaga cattttttga taatagacaa 3060 gctcaggtat cgatcagctg gtggggtttt cccgcccaac ggatgttttg gtcaatttcg 3120 gcagagcgcg aagtttgctc tcttgggtag ggagggtaaa atagtttgcc ctagttccca 3180 gaccggccga gcgcgacatt ttcccacctg gcagggaggg taatatagtt tgctctcctt 3240 cccagcgcgg tcaagcgtaa ctaattgtcc aacggcatcg gtcaaggata attgtggcta 3300 ctttctcgtt ttaaaatacg gctagcggcc agggaaaata gtttagctcg gatgttttgc 3360 cacatatcga atgtaagtgt accctggcat aggtctgcga gataaaaata tttagtttgt 3420 tgttttttcc tctcgaattt cgacggtatt tgagtgctac cgaaaatggc gcctccaacc 3480 ttgtatcttt ctttagtagg gagagagaag tcataaattc cgttgagaaa acccccccaa 3540 atcgtttatt acacgtgaat ttgacaacaa caaggcatgt tctaagttct aaggcaattt 3600 tattgacaac atttcacaca aaaaaacgct ttactcgacc gatctcagaa cagccgaatt 3660 ccgatctacg acaagcaacc attgcctggg ctacctgtg 3699 // ID Daphne-4_NV repbase; DNA; NEM; 4667 BP. XX AC . XX DT 24-MAR-2011 (Rel. 16.03, Created) DT 24-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Daphne-4_NV non-LTR retrotransposon - consensus. XX KW Daphne; Non-LTR Retrotransposon; Transposable Element; NVREP537; KW Daphne-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 3648-4661 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 3648-4661 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-4667 RA Kapitonov V. and Jurka J.; RT "A family of Daphne-4_NV non-LTR retrotransposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~98% identical to the consensus. Its 3'-terminal CC portion was reported origianlly as the NVREP537 transposable CC element [1,2]. The are some microsatellite variations in the 3' CC terminus: (AGTCTAA)(AGTCTAA)-3', CC (AAAAAAGTCTAA)(AAAAAAGTCTAA)-3'. XX FH Key Location/Qualifiers FT CDS 139..981 FT /product="Daphne-4_NV_1p" FT /note="ORF1 protein, common in different clades." FT /translation="MGDTKQLRKEHDALKAQLHNLVKEHEVLRAKMSEKLD FT RDHSPTSDDMQSLNITCDGLLAWRKEVDAALNSFQAKLGTLVDKVDSMGKE FT IDSATAYSYQYNLKITGVPQMSDKENADQTTSLCLHLFSKIGVEMDDYEID FT IAHRIPTRVQHGRRGQKNKPIICKFVRRSVRERVLAARKNTSSLKSEDFGL FT PPDAVLGRISILSHLPPKLQELLGKAKDYQTQHGFKFCWAKSTAVFLRKTE FT NSTVHRLESTEDLDNLSLNEPTVAEVEEQQPLPINDSYVK" FT CDS 1108..4359 FT /product="Daphne-4_NV_2p" FT /note="AP endonuclease and RT domains." FT /translation="MPMRGRNKHFEKEMKSTLRELPYFSYRGDFASFHGRF FT NNSLLSTKKSKRNLDNLPSLYDLELFSLNADTDQNINNPDTSTCIRSKYYS FT PHSFEKMKNNLTKDELDNTFSVFHNNVRSIRSNLEYLETQILHELDHHFDV FT IGITETKITNSNSNVDLPKIPGYNFEYVPTPLSAGGVGLFIDESLSYVVLE FT KKTCSAFQALWIEISVPERKSIVCGIFYRQHNSPEAFQSYSDSAIETFISS FT GKMVCILADTNIDLLKSTRCQYAHNFLLSLLSCYLIPTIDKPTRVHKNSAT FT LIDNIFVNSPEQVTCSGNIVTDVSDHFSQFCFFSSAKAKPINEKRKVRDFS FT NFSEEKFTNDVSQVDWDSLVDNGRHDINKIFSSFYKKLNKLVNKHAPLKTL FT SKRKIKQLTKPWITKGIRTSIKIKNRLYHASGNTSRYKYYRNKLNALIRSS FT KKEYYFSYFENNISNMKKTWEGINSLLQRRTKSSKYVNAINDLNNNKITKD FT PLRVSNILNNHFVSVGRRLANKLPPSQHNFRNYLATSNSPPSSFLFRSVTA FT AEVQLEIMSIPNHKACGLYSCPTQLLKCVSHIISHPLALLLNMSVAQGTYP FT DKLKMSKIAPVFKADDELDPNNYRPISLLSNLNRIYEKLVYTKMVSFIEDN FT GLLYKAQYGFRKSHSTQHATLDIINTIQRNMDNRFYSCGIFLDLKKAFDTV FT DHDILLEKLNFYGFRGVINDWFSSYLTNRKQTTEIKNCISEKSSITCGVPQ FT GSILGPLLFLIYMNDMQYSSDKLNFFLFADDTNILYADKSGKSIETTVNNE FT LFKVYNWLTANKLTLNIKKSNFVIFHPYQKTLACHPKILIYDNDRKKTVSL FT ECKEYVKYLGVLIDKNLTFKYHIEHITTKISRTVGLIAKLRHFVPTKTLLH FT IYQSLILPHISYVVTVWGHASKCYLNKILYLQKRALRFMFFAQKSDHAVPF FT FARTNILPIQSLYFESVCHLMYDIRNGTAPPNILNLFTDTKSVHSYNTRSS FT TSNKFYIQKSRLEIQRNSFSRVGARVWNELPQSLRESSKKQFKTKLRSALV FT DILIKYDDYIDVCQISTALKNHNLLVS" XX SQ Sequence 4667 BP; 1545 A; 957 C; 800 G; 1365 T; 0 other; gactgtgaga gagtgcggac gcgttttccg cagctcagtg tttttctgct tttttttttt 60 tgctttccta agcaactgcg agctgcagtt tgcttattta atagtattag taagtttata 120 tatatacaaa gttaaattat gggagatact aaacaattaa gaaaagaaca cgacgctttg 180 aaagctcagt tacacaatct tgtaaaggaa cacgaggtcc ttcgagcgaa gatgtcggaa 240 aagcttgaca gagatcattc gccaaccagt gatgatatgc aaagcttaaa catcacttgc 300 gacgggcttt tagcgtggag gaaagaggtg gatgcagctt taaacagttt tcaggccaaa 360 ttagggacat tggtcgacaa agtagactct atgggcaaag aaatagatag tgccaccgca 420 tacagctacc aatataatct caaaataact ggagtgcccc agatgtcgga caaggagaat 480 gcagaccaaa cgacgagctt gtgccttcac ctgttcagca aaattggagt cgagatggat 540 gactatgaga tagacatcgc acataggatc cctacacgag ttcaacatgg ccgccgaggg 600 cagaagaaca agcccataat ctgcaagttt gtgaggagat cagtacggga gagggttctg 660 gcagcaagga aaaacacttc aagtctcaaa tcggaggact ttggattgcc cccagacgca 720 gttctcggtc gtatatcaat actcagccac ctgccgccaa aactacagga gctcctgggc 780 aaagccaagg actatcaaac tcagcatggc ttcaagtttt gctgggccaa gagcacggca 840 gtcttcctcc gaaaaaccga gaactcgacg gtccatcggc ttgaatctac agaagactta 900 gataatttaa gtctaaatga accaactgtg gccgaggtcg aggagcaaca gccattacct 960 ataaatgaca gctatgtaaa atgaaatttc agttaaacct tatgtctgtt gaattaggtg 1020 ctcaaaattt tcctttgcca gtactaacta ctgtaaaatt tcttactact gtacatacca 1080 ttatgtgttt atatctaaat cgccttaatg cctatgcgtg gtagaaacaa acactttgaa 1140 aaggaaatga agagtacctt acgcgaactc ccctacttta gttaccgggg agactttgcg 1200 tctttccatg gccgtttcaa taatagcctt ttaagtacaa aaaaatctaa gcgaaattta 1260 gacaatctac cgagtctcta tgacctcgag ctatttagtt taaatgccga tacagaccaa 1320 aacataaata atcccgatac ctcaacttgt atacgaagta aatattattc accccatagt 1380 ttcgagaaaa tgaaaaataa tttaactaaa gatgaattag ataatacatt ttcagttttt 1440 cataataatg tcagaagcat aagatcgaac ctagaatatt tggaaactca aatactccat 1500 gaacttgacc accattttga tgttattgga ataaccgaaa ctaaaattac aaattctaat 1560 tctaatgttg atctaccaaa aattccaggc tataactttg aatacgttcc gacgcctctt 1620 tcggctgggg gtgtcggatt gttcattgac gagtcgctta gctatgttgt cttagaaaaa 1680 aaaacttgct ccgcattcca agcattgtgg attgaaataa gcgtcccgga aaggaagagc 1740 attgtgtgcg gtatctttta tcgacagcat aactcgcctg aagcattcca gtcatattct 1800 gacagcgcga ttgaaacctt tatttcgtct ggcaaaatgg tgtgtatttt ggcagatacc 1860 aatatcgatc tcctcaaaag tactaggtgt caatatgccc ataattttct tttgtctctc 1920 ttaagctgtt acctcattcc cactattgac aagcctacgc gagtacacaa aaactccgcg 1980 acactgatcg ataacatttt tgttaactct cccgaacagg tcacgtgtag tgggaatatt 2040 gtcacagatg ttagcgacca cttctcacag ttctgcttct tttcatcggc taaggctaaa 2100 ccaattaacg aaaagaggaa agtgcgcgat ttttcaaatt tctcagaaga gaaatttaca 2160 aatgacgtat ctcaagttga ctgggacagt ctcgttgata acggccgtca cgacataaat 2220 aaaatatttt cttcgtttta caaaaaacta aacaagcttg ttaataaaca tgcaccatta 2280 aaaaccctct caaaaagaaa aataaagcaa ttaaccaaac cctggattac aaaggggata 2340 agaacctcaa taaagataaa aaataggcta tatcacgcct ctggaaatac aagtagatat 2400 aaatactatc gtaataaatt aaatgctcta attcgatcaa gtaaaaaaga atattatttt 2460 agctattttg aaaataatat ttcaaatatg aaaaaaactt gggaggggat aaactcccta 2520 ttgcaacgga ggactaaatc atctaaatac gttaatgcca ttaatgacct aaataataat 2580 aaaataacta aggaccccct gcgcgtatcc aacattttaa acaatcattt tgtttccgta 2640 ggtcgcagat tagccaacaa actgccccca tctcaacata attttaggaa ttaccttgcc 2700 acgtcaaatt cccccccgtc ttcgtttttg ttccgatcag ttaccgccgc agaggtacag 2760 cttgaaataa tgtcaatccc caaccataag gcatgtggac tttactcatg tcctacccag 2820 cttttgaaat gtgtgagtca tatcattagt caccctctag ctttacttct taatatgtct 2880 gttgcccagg gaacttaccc tgataaacta aagatgtcaa aaattgcccc agtcttcaag 2940 gcagatgatg aactcgaccc gaacaattac aggcccatat cacttttatc caaccttaac 3000 aggatttatg aaaaactggt atacaccaaa atggtctcct ttattgagga taatgggttg 3060 ttatacaagg ctcaatatgg ttttcgaaag tcccattcaa cacaacatgc aacattagac 3120 ataattaaca cgattcaaag aaacatggac aaccgctttt actcttgtgg tatcttcctg 3180 gatttgaaaa aagctttcga tacggttgac catgatatcc ttttagaaaa attaaatttt 3240 tacggtttca ggggtgtcat aaatgattgg ttttcctcat acttaacaaa tcgcaaacag 3300 acaactgaaa taaaaaattg catatctgag aaatcctcca ttacttgcgg agttccacag 3360 ggctcgatcc ttggaccgct attgtttctg atttacatga atgacatgca gtactcctca 3420 gataaactaa atttctttct ttttgctgat gacacgaata tcctgtatgc cgataaaagt 3480 ggcaaatcaa tagaaactac tgtaaataat gagctgttta aagtctataa ttggcttacg 3540 gcaaataaat taacgctaaa tataaagaaa tcaaatttcg tcattttcca tccataccaa 3600 aaaactctag cttgtcatcc taaaatacta atttatgata atgatagaaa aaaaactgtc 3660 agtcttgagt gtaaagagta cgtcaagtac cttggggtac taattgataa aaatctcacc 3720 ttcaaatacc acattgagca tattacaaca aagataagca gaactgtggg attgatagct 3780 aaactgcgac attttgtccc aaccaaaacc ctacttcata tctaccagtc cttaatcttg 3840 ccccacattt cgtacgtagt gaccgtgtgg ggtcatgcca gtaagtgtta cttgaacaaa 3900 attctatact tacaaaaacg tgctctgcgc tttatgtttt tcgctcaaaa aagtgatcat 3960 gcggtcccct ttttcgctag aactaatatt ttacccatac agtcgttata ttttgaatcg 4020 gtgtgccatc ttatgtatga tatccgaaat ggaaccgccc cacccaatat tctaaacctt 4080 ttcacggata ccaaaagcgt tcattcttac aatacacgat catcaacctc aaataaattc 4140 tacattcaaa aatctagact tgaaatccag cgaaattctt tttcaagagt aggcgcaagg 4200 gtgtggaatg agctgccaca gtcattgaga gagtcctcca aaaaacagtt taaaacaaaa 4260 ctgcgttcag cccttgttga tatccttatt aaatatgatg actatattga tgtctgccaa 4320 atcagcacag ctttgaaaaa tcacaattta ttggtatcat aaactcacat acttatgttt 4380 gctttgtttt cccctttttt tatcatcaga taaataatgc tgttaatgct ctttttttct 4440 ctaagaccag aagtgtttat ttaaattttc atttttctcc caaaattttt caaattttca 4500 aattttcata atatactagt tctcacttaa ctttgcttat acaattatat ttaatattta 4560 tgtaaataag taagtgactg atccgtctcg attagctcgt ctatttgcgg atcagtcaca 4620 cctactacaa ataacaattt gatacaataa aaaagtctaa agtctaa 4667 // ID DNA-4A_NV repbase; DNA; NEM; 266 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-4a_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-4; KW DNA-4a_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-266 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-266 RA Kapitonov V. and Jurka J.; RT "DNA-4_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 404-404 (2008). XX DR [2] (Consensus) XX CC DNA-4A_NV is an old subfamily of DNA-4_NV. The genome contains CC ~1000 copies of DNA-4A_NV that are ~79% identical to their CC consensus sequence. XX SQ Sequence 266 BP; 80 A; 56 C; 52 G; 78 T; 0 other; tatacaccta tttcaaaaaa cgttgtcagt gcaaacggca aatggcgatt ggcaaatggc 60 agttccacaa ccgaagggta ccatgcgtct cattatattt caaccgaatg caggagaaca 120 tggatcaatc atacaataat caattaaagg ctatcgatgt atagctctgg catcgctgga 180 gttcatttat aagcaccttt cggtcttgga actgccattt gccattcgcc atttgcactg 240 acaacgtttt tttaattagg tgtata 266 // ID Gypsy-40-LTR_NV repbase; DNA; NEM; 123 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-40_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40-I_NV; KW Gypsy-40-LTR_NV; Gypsy-40_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-123 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-123 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-40_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 514-514 (2007). XX DR [2] (Consensus) XX SQ Sequence 123 BP; 32 A; 23 C; 30 G; 38 T; 0 other; tgtaggactg ggactagcgc atgcgcgtcg gttccaagat ggcggaatac gttcagaact 60 gaaaacccgt tgttgtttta gcaactgtta catactttat tgtatagcgt tataactgtt 120 aca 123 // ID DNA-4-4_NV repbase; DNA; NEM; 8283 BP. XX AC . XX DT 15-MAR-2011 (Rel. 16.03, Created) DT 15-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-4-4_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 4-bp TSD; KW NVREP97; DNA-4-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-8283 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-8283 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-8283 RA Kapitonov V. and Jurka J.; RT "A family of DNA-4-4_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (15-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 90-98% identical to the consensus. They form long CC palindromes and contains multiple internal duplications. It was CC reported originally as the unclassified NVREP97 transposable CC element. It shares common TIRs with DNA-4-1_NV. Both these CC families belong to the same unknown superfamily of DNA CC transposons. XX SQ Sequence 8283 BP; 2407 A; 1757 C; 1655 G; 2446 T; 18 other; aacagtgatc aattctaaac tggaaaaaaa acctattaag tggaaacatc ttagggtcct 60 gaccccgtac gcagttctgc tcaaggttaa accaatcagc tatcgagcta tgatttgggg 120 tttgcacggc gcagatctgc gcggtttgag ccaatcagac gttatagatc tcggtgacat 180 caaggaggtg ttgacataca ataaccagac tactctgtat ggcataaata tctggttatt 240 acatgtcaac aggggtaaag cctttgttaa ttctcaaaca aaaggtaaaa caaaacctct 300 gaaagtctga acgaaaacac cttcctttga ctaaatacaa taagctaaaa aggagcgaca 360 ttattttcac aggtcctctt ttattattat agtttctcaa attgatactt tttgtgtttg 420 atatgtgtat tatttttagc ttacttgaag ggtgctaatt tggcgggatt gttttggcgc 480 gttaagaaca gtgttctcaa atactggaac ttccttcgtg tatctcctcc ttagagttaa 540 tcgattaact ccaatataat gccttcctta ttttcggagt ttatgatatt tctttgaata 600 ccttgtatcc cagaagagtc cttgcgttat tttccaattt caactggaag cttggcaagc 660 cttaatcggc cacggcggac ttgttacttt gctttcgttg taaatgcgca tgcaaccata 720 caaatatcca tctttggtcg cttaatagta aactcggaat gatcaagccg gctataacgc 780 gaggcaacgc gagttggagt gcttatcatt gcaagtggtc acaagacaca aagcgcagtc 840 ctgcgcttgc attagccaat aatgatacaa ttattcactt cctttagcgc aggactgctc 900 atgtatcagc gaatcccgta tttagcgtga tatcggaacc cacgtgaact gctacctagc 960 gcctggttaa ttaacctggt taatctactc ggcttagttt cgtattttaa ctcaaacata 1020 ttgattaaaa ataaacttct cactacatcc agagtacttt tcaattatct gttaaggact 1080 cgcttatttt gagaaatttc gggctcgtta tgaaagtaac gcgaaacggc aaaacttgag 1140 cgcagccctg cgctcgcatt agccaataat gatacaatta ttcacttcct gttgcgcagg 1200 actgctcatg tatcagcgaa tcccgtattt agcgtgatat cggaacccat gtgaactgct 1260 acctagcgca gagcagctta tgcccttgta cctgccactt ggttaatcta ctctgcttag 1320 tttcgtattt tcaatcaaac atgttgttta aaagtaaaca tgtctatagt tatgaaagtg 1380 atgcgaaacg ggaaaacttg tgagttaatt acgagtttcg cgcacgactg caccgttttg 1440 tgcttatctt tcaagatatt ttgcactcca ctgttagcaa agcggctgtt atcttatcaa 1500 atcaaaaata acattagtat gatcaagccg gctataacgt gaagcaacgc gagttggagt 1560 gcttatcatt gcaagtggtc acaagacaca aagcgcagtc ctgctcttgc attagccaat 1620 aatgatacaa ttattcactt cctttagcgc aggactgctc atgtatcagc gaatcccgta 1680 tttagcgtaa catcggaaca tattgattaa aaataaacgt gtcactatat ccaggtactt 1740 ctcaattatc tgttaagtac tcgcttattt tgagaaattt cgggctcgtt atgaaagtga 1800 cgcgaaacgg caaaacagcg cagccctgcg ctcgcattag ccaataatta tacaaktatt 1860 cacttccttt gcgcaggacc gctcatgtat cagcgaatcc cgtatttagc gtgatatcgg 1920 aacccacgtg aactgctacc tagcgcctgg tcaatcaacc tggctaatct actcggctta 1980 gtttcgtatt ttaactcaaa catatcgatt aaaaataaac ttgtcactac atccagagta 2040 cttttcaatt atctgttaag gactcgctta ttttgagaaa tttcgggctc gttatgaaag 2100 taacgcgaaa cggcaaaact tgagcgcagc cctgcgctcg cattagccaa taatgataca 2160 attattcact tcctgttgcg caggactgct catgtatcag cgaatcccgt atttagcgtg 2220 atatcggaac ccatgtgaac ttctacctag cgcagagcag cttatgccct tgtacctgcc 2280 acttggttaa tctactctgc ttagtttcgt attttcaatc aaacatgttg tttaaaagta 2340 aacatgtcta tagttatgaa agtgatgcga aacgggaaaa cttgtgagtt aattacgagt 2400 ttcgcgcacg actgcaccgt tttgtgctta tctttcaaga tattttttac ttcactgtta 2460 gcaaagcggc cgttatctta tcaaatcaaa aataacaata gtatgataaa gccggctata 2520 acgtgaagca acgcgagttg gagtgcttat cattgcaagt ggtcacaaga cacaaagcgc 2580 agtcctgckc ttgcattagc caataatgat acaattattc acttccttta gcgcaggact 2640 gctcatgtat cagcgaatcc cgtatttagc gtaacatcgg aacatattga ttaaaaataa 2700 acgtgtcact atatccagag tacttctcaa ttatctgtta agtactcgct tattttgaga 2760 aatttcgggc tcgttatgaa agtaacgcga aacggcaaaa cttgagcgca gccctgcgct 2820 cgcattagcc aataattata caagtattca cttcctttgc gcaggactgc tcatgtatca 2880 gcgaatcccg tatttagcgc gatatcggaa cccacgtgaa ctgctaccta gcgcagtcat 2940 tcacttggtt aatctactcg gcttagtttc gtattttaac tcaaacatat tgattaaaaa 3000 taacttctca ctatatccag agtattttca attatctgtt aaggactcgc ttattttgag 3060 aaatttcggg ctcgttatga aagtaacgcg aaacggcaaa acttgagcgc agccctgcgc 3120 tcgcattagc caataatgat acaatattca cttcctgtgc gcaggactgc tcatgtatca 3180 gcgaatcccg tatttagcgt gatatcggaa cccacgtgaa cttacctagc gcagagcagc 3240 cttgtctgcc acttggtcaa ctactctgct tattcgtatt ttaacagtgt aaaagaaact 3300 gtctatagtt atgaaagtga tgcgaaacgg gaaaacttgt aatcacgagt tctgcgcacg 3360 actcgccgtt ttgtgcttat ctttcaagat atttttcgct taactgttag caaagcgccg 3420 ttatcttatc aaatccgaaa taactagatg taaagccgct atagcgcgaa gcaacgcgag 3480 ttggagtgct tatcattgca ggtgatcaca agacacaaag cgcagtcctg cgcttgcatt 3540 agccaataat gatacaaata ttcacttcct ttagcgcagg actgctcgtg ataggaagat 3600 tagagacgtc ggtaaaaggg acacatcgga gtcaggctta tgcgagcaaa aagcgcgcct 3660 gcgcgcaata aatgtgttat acttctttag ccaggactgc tatatcagcg aatcccgtat 3720 ttagcgtgat atcggaaccc acgtgaactg ctacctagcg cctggttaat taacctggtt 3780 aatctactcg gcttagtttc gtattttaac tcaaacatat tgattaaaaa taaacttgtc 3840 actacatcca gagtactttt caattatctg ttaaggactc gcttattttg agaaatttcg 3900 ggctcgttat gaaagtaacg cgaaacggca aaacttgagc gcagccctgc gctcgcatta 3960 gccgataatg atacaattat tcacttcctg ttgcgcagga ctgctcatgt atcagcgaat 4020 cccgtattta gcgtgatatc ggaacccatg tgaacttcta cctagcgcag agcagcttat 4080 gcccttgtac ctgccacttg gttaatctac tctgcttagt ttcgtatttt caatcaaaca 4140 tgttgtttaa aagtaaacat gtctatagtt atgaaagtga tgcgaaacgg gaaaacttgt 4200 gagttaatta cgagtttcgc gcacgactgc accgttttgt gcttatcttt taagatattt 4260 ttacttcact gttagcaaag cggccgttat cttatcaaat caaaaataac atagtatgat 4320 aaagccggct ataacgtgaa gcaacgcgag ttggagtgct tatcattgca agtggtcaca 4380 agacacaaag cgcagtcctg ctcttgcatt agccaataat gatacaatta ttcacttcct 4440 ttagcgcagg actgctcatg tatcagcgaa tccctattta gcgtaacatc ggaacatatg 4500 attaagtaaa cggcactata tccgagcact tctcaatatc tgctaagtac tcgcttattt 4560 tgaaaaattt cgggctcgtt tatcctttag gctatcggga ttaattgcca gcataangtc 4620 agttatctnc agcttgntac acgtttacag ctcataattt gcttttcaag ttatkcaagc 4680 atgtkttccg ccacaaccct sggtctattt tactttagtt gtggttagct tctatgcaaa 4740 cacgaatggt ttgtgggttc acttatgaak tacaaaattg acgcagtcct gcgttcgaaa 4800 gccaataatg atacgattat tacttctgac aggagtatca ccgtanttgt aatgaatgtg 4860 tgactacagc agataattag gtcaatgctc ggcaactacg aattggggga cttgcatcat 4920 accagtgtgg ctgattttat attgatcggc tcgtttgaaa gtaaccggaa cggcaaaatt 4980 gagcgcagcc tgcctcacat tggccaataa tgacaaaata ttccttgcgc aggactgctc 5040 atgtcagcga atcccgtatt nagsgtaata tcggaaccca cgtgaactct acctagcgca 5100 gagmagcaat gcccttgtcc ctgccacttg gttaatctac tcggcttagt ttcgcatttt 5160 aactcaaaca cattgataaa aatccagagt gttcgagtcg agaagstcta tcataaaacg 5220 tagtgcttam caaacttatt atcactgtca gncattcttt attttattag tgttgctact 5280 ttgccctggg gagtacacat ctaaatgtta gatcgataac agaaccggtg cgcagtgtgt 5340 agtacaggtg acaagctcta tcgataagac atgacaaaat gccgacaaac caatctcagc 5400 gcagcactgc tctgtgaagg cgaccgtgtc agcaaagcgt ggttatcagc ttcgcgggca 5460 ggcagacgat gcaaaaccac aggggtccaa aaaaatcagt ctcaaagata taccatttct 5520 ctacctacgg ggtttctgga cgctataaac tggctacccg gcatccaaag ggtacatttt 5580 gcgctgcaat cggtgtaata actccaacag gcgtccctcc acagtccagt cggcgtacac 5640 cattcattgt tttctttatt actcatcttt taggctcttt ggggggcatt tgttgatttg 5700 acccgcttga caaaaaatat aagaacttta tacaaattat taaactataa cggtacaaaa 5760 cctgacatgc tcatctagtc gactctaatc attcgagttg acgaagacct aagcgtatta 5820 accgtacacc tcgcgctctt gtcaaaacta tatgtatgct aaaattgtta gatcaccatt 5880 ctcgttctct aggtgaccac ctggagacac agaaactaag attctaatgt tgttatatat 5940 acccaacagc gtaacaaatc aaatcaggat tgtgatagct agtttccact aaataagtga 6000 agtttcataa tcacagcaaa tagttccttg cctgccaata gccaataaca gttgctttgt 6060 tgttttgcta tgcgaggcaa gacagctttt gtgttcttgt cattgcaaag tgccacttgc 6120 ctcgttctgg atggggactc caaactcgag tagcgagccg ttaaagcaaa tttccatgtg 6180 ttgatttgtt mtgaatacgt tttgcctaac tgtttcccga gttaaaagga ttgaagctct 6240 acattaatac gaaactagca ggagccgagt atgattaact cactctggtt wcgctcgtat 6300 cctaaccaga gcatgtttgc ctgcgctagg aacatgtttt taccagttca cgtgggttcc 6360 gatatcacgc taaatacggg attcgctgat acatgagcag tcctgcgcac aggaagtgaa 6420 taattgtatc attattggct aatgcgagcg cagggctgcg ctcaagtttt gccgtttcgc 6480 gttactttca taacgagccc gaaatttctc aaaataagcg agtacttaac agataattga 6540 gaagtactct ggatatagtg accacgttta tttttaatca atgtgttccg atgttacgct 6600 aaatacggga ttcgctgata catgagcagt cctgcgctaa aggaagtgaa taattgtatc 6660 attattggct aatgcaagag caggactgcg ctttgtgtct tgtgaccact tgcaatgata 6720 agcactccaa ctcgcgttgc tttacgttat agccggcttg atcatactaa tgttattttt 6780 gatttgataa gataacagcc gctttgctaa cagtgaagta caaaatatct tgaaagataa 6840 gcacaaaacg gtgcagtcgt gcgcgaaact cgtaattaac tcacaagttt tcccgtttcg 6900 catcactttc ataactatag acatgtttac ttttaaacaa catgtttgat tgaaaatacg 6960 aaactaagca gagtagatta accaagtggc aggtacaagg gcataagctg ctctgcgcta 7020 ggtagaagtt cacatgggtt ccgatatcac gctaaatacg ggattcgctg atacatgagc 7080 agtcctgcgc aacaggaagt gaataattgt atcattattg gctaatgcga gcgcagggct 7140 gcgctcaagt tttgccgttt cgcgttactt tcataacgag cccgaaattt ctcaaaataa 7200 gcgagtcctt aacagataat tgaaaagtac tctggatgta gtgagaagtt tatttttaat 7260 caatatgttt gagttaaaat acgaaactaa gccgagtaga ttaaccaggt taattaacca 7320 ggcgctaggt agcagttcac gtgggttccg atatcacgct aaatacggga ttcgctgata 7380 catgagcagt cctgcgctaa aggaagtgaa taattgtatc attattggct aatgcaagcg 7440 caggactgcg ctttgtgtct tgtgaccact tgcaatgata agcactccaa ctcgcgttgc 7500 ctcgcgttat agccggcttg atcattccga gtttactatt aagcgaccaa agatggatat 7560 ttgtatggtt gcatacgcat ttacaacgaa agcaaagtaa caagtccgcc gtggccgatt 7620 aaggcttgcc aagcttccag ttgaaattgg aaaataacgc aaggactctt ctgggataca 7680 aggtattcaa agaaatatca taaactccga aaataaggaa ggcattatat tggagttaat 7740 cgattaactc taaggaggag atacacgaag gaagttccag tatttgagaa cactgttctt 7800 aacgcgccaa aacaatcccg ccaaattagc acccttcaag taagctaaaa ataatacaca 7860 tatcaaacac aaaaagtatc aatttgagaa actataataa taaaagagga cctgtgaaaa 7920 taatgtcgct cctttttagc ttattgtatt tagtcaaagg aaggtgtttt cgttcagact 7980 ttcagaggtt ttgttttacc ttttgtttga gaattaacaa aggctttacc cctgttgaca 8040 tgtaataacc agatatttat gccatacaga gtagtctggt tattgtatgt caacacctcc 8100 ttgatgtcac cgagatctat aacgtctgat tggctcaaac cgcgcagatc tgcgccgtgc 8160 aaaccccaaa tcatagctcg atagctgatt ggtttaacct tgagcagaac tgcgtacggg 8220 gtcaggaccc taagatgttt ccacttaata ggtttttttt ccagtttaga attgatcact 8280 gtt 8283 // ID Gypsy-76-I_NV repbase; DNA; NEM; 1763 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-76_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76-I_NV; KW Gypsy-76-LTR_NV; Gypsy-76_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1763 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1763 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-76_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 575-575 (2007). XX DR [2] (Consensus) XX SQ Sequence 1763 BP; 513 A; 412 C; 450 G; 338 T; 50 other; ccgcctgccg tgcgcccaac cagtttgaag aagtgagagc acctgcagac gctactcgac 60 agtggggtca tccgaccaag ccagagtgac tacgcctctc cgatcgtgct ggtgcggaag 120 aagtctggag cgctacggct gtgcgtggac taccgacaac tgaacgctaa gacgaggaag 180 gatgcctacc cactgccgag gatagacaag tcattagatg cacagtactt ctcaatgatc 240 gatctggcgt ccgcatacaa ccaagtggag gtgcaccccg atgaccaacc taagacggca 300 ttcactagtc caatagggct ttttgaatac gtccggatgc ctttcggctt gtgcaacgcg 360 cccgccactt tccagcgcct aatggccaat atcttccgtg atgacatact gaggatcctt 420 ctggtgtacc tggacgacat catcgtatac agcaacactg tggcagacca acttcagagg 480 ctggaacgag tgcttcagaa gctaagggag cacggcctga agattgaacc tgcaaagtgt 540 caattctttc agagtcgtgt gacctatctg gggcatgccg tttcacctga tggagtatca 600 agtgatccag caaagacgga aacggtagca tgttggccaa ccccgaggac attgaaggag 660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggaagctgct 720 gacccacttt aggagcataa aagagaagaa cagactcatc taccgaatca tacagggcaa 780 ccatggacaa ccggtcgagc gtctagtcat accaaccgcc atgaaaggag aagtattcag 840 ggcagctcac aacaatttcg gacaccaaga acaagtgatt agaagtaggt gttggtggcc 900 tggaattcat acagacgtga agcgctggat aggagagtgt gaaagatgta ttgttgctaa 960 gggtccctac ctacctccga gaacaccgat cggaagtatt gtggcaacaa aaccgttgga 1020 agttctcagc tcgaaccagc tcgaaccagc ttcagatggg agagagaatg tactggtcct 1080 gactgatgtc ttactaagtt caccgttgcc ataccaacac gagatcagaa agctacaaca 1140 gtggtcaaag cccttcttaa agaatggttt atggtatatg gtgttccaca aagacttcat 1200 tcagaccagg gacgttcatt tgaagcggaa attgtaaagg aactctgttc tgtttacggc 1260 ctcaagaaat caaagacaac cccctaccat ccacaaggca atggtcagtg cgagcggttt 1320 aacagaaacc tccacgaact actgaggacc ttaccatcag agaaaaagag gaagtggcca 1380 gagcacctga gagagctatg ttatgcatac aatgcaacgc cgcattctac aactggctac 1440 cccccccctt ctatctgatg tttggcagag acccaaggct gcccattgac cgattgattg 1500 aggaagagga gaccatagac agaccagaca actgggtgac cagacatgct gaagaattga 1560 gagaagccca ccagagggca gcagagaggt tggcaagcaa agcagaggca agacagcaac 1620 agtatagcaa aagtaaaagg accaaagaag atattattgc tgtcggtacc agagttctga 1680 cgagaaaccg tggggtcaag ggacgcaaca aaatccagga cagatggcgt gacaaggttt 1740 acaaggtagt ggagcagagg gag 1763 // ID Penelope-1A_NV repbase; DNA; NEM; 1080 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Penelope-1A_NV retrotransposon - incomplete consensus sequence. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-1A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1080 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1080 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1080 RA Kapitonov V.V. and Jurka J.; RT "Penelope retrotransposons in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC It is a 3' terminal part of the intact retrotransposon. XX SQ Sequence 1080 BP; 389 A; 305 C; 160 G; 226 T; 0 other; tctacactat catcagacaa agaaaccttc gaccaagccg ccccgccata ccagaaagca 60 ctcgacgaaa gtggatataa ctacacgctg cactacgaac caaacaccac aagcaaacgc 120 aagaaccgcc agcgcaacaa catcatctgg tacaaccccc cttttagcaa gaacacaagc 180 accaacatcg gccacagatt cctctcactc atagacaagc acttccctaa agaccacaaa 240 ctcagaaaaa tcttcaaccg gaacacaatc aaaatcagtt atagctgcat gagcaacacc 300 aagcagataa ttgacagcca caacaaacgc ataatcgcct catcaataac aaccgaagac 360 gcccctacct ccctcgccac cgccaataac aaaacatgca actgcagaca aaagaacgcg 420 tgcccccttg acggaaactg cctccaatca tctgttatct accaagctac tgtaacaaga 480 aaggacaaca acacctccga aacctacgta ggactaaccg agaacgaatt caagacaaga 540 tatagaaacc acaccgcctc attccgacac gctaaacaca gaaactcgac cgaactaagc 600 aagtacatat ggagccttaa agacaacgac atagaacact ttatttcatg gaaaatcctg 660 tcatctcact ccacctacaa cagctctagc aaaagatgta atctctgcct caaagaaaaa 720 cttatcatta tccgccaacc caagctatca actttaaaca agcgtaacga gctagtgtct 780 tcgtgccgcc acaggaacaa agccttgtta tgcaacagct gaactattca atttcatcat 840 aacagccatt caaatttcgc gccctatttt tatgttaatt ttatacatag atagtatata 900 agtgatggta gtaatatatt cttaataaat ctcctgatga gtgggcaacc acgaaacagg 960 cttgtagaga tgaaacggta gttcgcgtgt ttttttccta caaaccaaga tatatcccgc 1020 tctacaccta tgtattgagc actgttatat gaacgcctgc actcacgcat tatatatata 1080 // ID RTE-6_NV repbase; DNA; NEM; 3598 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone RTE-6_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3598 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3598 RA Kapitonov V.V. and Jurka J.; RT "RTE-6_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 660-660 (2007). XX DR [2] (Consensus) XX SQ Sequence 3598 BP; 1126 A; 931 C; 816 G; 725 T; 0 other; tctcacacac aagctcctac aacaccacac acacaaaagt cctgtggcga ttggcgattg 60 gcaaagcagc aggtgaggac acactggaag ctgtagtcag gaccctccac acaggcggct 120 caaggcattg gtcgtcagct actgaccgag gcagcagtaa ctcccggcag caccttgggt 180 gactgagcag ccctcttcag gaatgcactg ctcacctccg tagaatgagg aagggactag 240 aaaaggtgtc ctaaaaattg cctgcctcac aacacctggg tcagtatacc gcgactggct 300 aggatcccca tcttgcggtc gaaacacaag aaaactaaaa acaaagtggc taccaatcac 360 atttggtgca tggaacgtcc ggacacttct gaacagggac actgctgtaa gaccagaacg 420 gcgaacagca ctagttgcca aggaattgtc gaggtatagc attgacattg ctgctctgag 480 tgaaacacgt ttcgctgaag aagggcaact gaaagagcca acagctgggt ataccttcta 540 ctggagcgga agaggaaagg atgagcgccg agaggcagga gttggattcg ccatcaagaa 600 tgaacttgtg ggcaaactaa ccagcctacc aaagggtgta aacgaccgtc tcatgacgct 660 caacctacca ctgaaaggga agaagcaggc taccattata agttgctacg ctcctacaat 720 gaccaactct gacgacacca aagacaaatt ctacgaggat cttgactcca ttatttctgc 780 taccaaacag caagacaaac ttgtcatcct tggggatttc aatgctcgtg tgggatcaga 840 tgtcgaatct tggggcgaag tcattggtaa gcatggcgtc gggaagtgca acagcaatgg 900 gctacttctc ctcacacttt gtgcaagaca tggccttctc ctcacaaaca caatgttcca 960 gctcccaacg agaaacaaga caacatggat gcacccacgc tcaaaacact ggcacctcat 1020 agactacgct atagttagaa gatgcgacct tcacgatgta cttgtgacga aatccatgtg 1080 cggtgcggac tgctggacgg accatcgtct catcctgtgc aaggtcaagt tctacataca 1140 tcccccaagg cgaccacagg gcaagaaacc tgcaaaacgc ttggacgtcc aaaagcttgg 1200 aaacaaagac gtcaaagagc gagtcaccaa ggaactggaa gagaagcttg acacacttgc 1260 cttcaacaca gaggacatcg aacaggactg ggcactcttc aaagacacta tccaatccac 1320 gtgtaacaac atcctcggcc caaaaacgca ctgccaccaa gactggttcg atgaaaacaa 1380 cgaggaaata aacagactca tagatgagaa gaacagactt cttaaggtct acctagttca 1440 caacagccaa gccaacttag acgctcttca caaagccaaa cacgctgcac aggtcaagct 1500 gaggctcatg aaggacaaat ggatgataca gaagactgca gagattcaag gttttgctga 1560 cactcataac gtcaaggagt tctacaaagc tgtccgtaca ctatacggtc cacaacctgc 1620 tggtaccgca ccacttctct ctgctgatgg gacaaaactc atctcagaca agccaggcat 1680 ccttgacaga tgggctgaac attttgaatc agtcctgaac aggccttcat ctgttagcaa 1740 tgaagctatt gacaggctcc cccaagcaga gattgacgct acactcgaca acccaccaac 1800 attcgaagag actgtgaaag ctatatcctt gatgtcacct ggtaaagcac ctggagctga 1860 cgctatccct gctgaaatct acaaagcatg tggaccaatt gccgttaaca aattgacgga 1920 acttttacag tccatgtggc agaaagaaac aatcccccaa gacctaaagg atgcgtcaat 1980 agtccacctc tacaagagaa agggcaatat ccaggcatgt gacaaccaca gaggtatatc 2040 actactatca atagctggga aaatactggc aagaatactg ctgaacagac ttcttcgtca 2100 cctagagaat ggtctccttc ccgagagtca atgtggcttt cgagcaggcc gtggcacagt 2160 cgatatgatc tttgctgcca agcaacttca ggaaaagtgc caagaacaac acacagccct 2220 gtttaccact tttgttgatc tcacgaaggc gttcgacacc gtcagtagat caggcctctg 2280 gacgataatg ggaaaatttg gctgcccacc aaggtttact tctatggtac gccaattcca 2340 cgacgggatg caagcccatg tcctcgaaga tggaaatcag tcggccccct tccaagtgac 2400 gaacggggta aagcagggtt gtgtgctcgc tcccactctc ttcagcatga tgttcaccgc 2460 aatgcttgca gatgcatatt ccgacaatga tccgggtatc gacataaaat accgaactga 2520 tggtggaata tttaaccctc ggcgtctcag ggcaaaaact aaagttcata tcaccagact 2580 cagagtctta ttattcgcag acgactgcgc tctaaatgcc aacacagggc tagaaatgca 2640 agaaagtgtc aacaagtttt cagatgcctg taacaacttc ggcctgacaa taagtaccaa 2700 gaagacagaa gtcatgcttc aaccagcacc aaacacacca tacatggaac ccgagatcta 2760 cattaactcc cagcgtctaa acccggtgga aaaattcaca taccttggaa gtacgttatc 2820 cagagtcata cacatagatg atgaagtcaa tgcccgcatc gctaaagcca gtgcatcttt 2880 tggtcgattg agcaaaacag tctggaaccg aagaggcatc tcaacagaga caaagctggg 2940 cgtgtacaga gcaatagtat tgacatcatt actctacgca tgcgagacat ggacggtgta 3000 ccaaaggcat gccaggaaat tgaatcattt tcacaccata tgcctgcgca agatccttgg 3060 cataaagtgg tatgaccata ttcctgacac tgaagtactg gatcgtgcaa acatgttcag 3120 tatcaacacc atgctgcagc aagcacaact ccgatgggcc ggtcatgtga gaaggatgtc 3180 tgatacacgc atcccaaaac aactcctcta tggtgaactc cattatggca ctcgcagcaa 3240 aggcggtcag aaaaagcgct acaaagacac cctaaaagtc tctgcaaagc aatttggaat 3300 agatccagac aactgggaag agcttgcaga tgacagaact cactggagat cagtagtcaa 3360 gaaaggggcc aagctatgcg aggacaagcg tgtaaaccaa gcaaagcaca aacgacacct 3420 tcgaaagaca cgagcagctt cggttacagt tccaacaggt ccagtctgtc ccgagtgtgg 3480 tcgagccttc catgcgcgaa tcggtctggt cagccaccta cgcacacaca acacacaaac 3540 ctagacgaca tacatcgcag agatgaatgg tcatcttcgc cagcgaagga cgaacaag 3598 // ID Gypsy-34-LTR_NV repbase; DNA; NEM; 86 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-34_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34-I_NV; KW Gypsy-34-LTR_NV; Gypsy-34_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-86 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-86 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-34_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 500-500 (2007). XX DR [2] (Consensus) XX SQ Sequence 86 BP; 25 A; 17 C; 20 G; 24 T; 0 other; tgttatggta tacctgttga atttgctagt taccaggcca tgcgcagcag ggcttagctt 60 gtagtcaact gaacacgaat aaaaca 86 // ID MuDR-N2_NV repbase; DNA; NEM; 2544 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone MuDR-N2_NV non-autonomous DNA transposon - DE consensus. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW MuDR-N2_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2544 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2544 RA Kapitonov V.V. and Jurka J.; RT "MuDR-N2_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 625-625 (2007). XX DR [2] (Consensus) XX SQ Sequence 2544 BP; 776 A; 495 C; 464 G; 809 T; 0 other; gggaattcat atattagcta acttagcaaa ttaacttact agtactagta aatgaaattg 60 ggggcgagaa agtttagtgg tattattttg aaattttata gaattttaaa attttataga 120 taaaaacata ctagtaaaca aaatttcggg gcgagaaagc aatctgacaa ctcgccccga 180 catttggttt actagtataa caataactat actattaaat gaaattacgg ggcgtaaagc 240 aaaaacgaca actcgccccg agatttggtt tactagtagt aagtaattat aatacctata 300 aattacgggg cgtaaagcaa aaacgacaac tcgccccgag atttggttta ctagtagtaa 360 gtaattataa tacctataaa ttacggggcg taaagcaaaa acgacaactc gccccgagat 420 ttggtttact agtagtaagt aattataata ccgataaatt acggggcgta aagcaaaaac 480 gacaactcgc cccgagattt ggtttactag taataagtaa ttataatacc gataaattac 540 ggggcgtaaa gcaaaaacga caactcgccc cgagatttgg tttactagta gtaagtaatt 600 ataataccga gaaattacgg ggcgtaaagc aaaaacgaca actcgccccg agatttggtt 660 tactagtagt aagtaattat aataccgata aattacgggg cgtaaagcaa aaacgacaac 720 tcgccccgag atttggttta ctagtagtaa gtaattataa taccgataaa ttacggggcg 780 taaagcaaaa acgacaactc gccccgagat ttggtttact agtagtaagt aattataata 840 ccgagaaatt atggggcgta aagcaaaaac gacaactcgc cccgagattt ggtttactag 900 taccaagaaa ttacggggcg taaagcaaaa acgacaacac ggcccgaggt ttggtttatt 960 cacgggaatt aggatacttt gtcagcgatt tctctataaa ataaacaaaa atgaatcccc 1020 aatttatgtt aaataatgaa ctcagctaat aaaatatttc taaccttata atccgaaagg 1080 tctcctgcct tctgagttag cgaaaccctt tttagtttcc tcttgttata tttctatttc 1140 tcttgtctaa aaaccctagc gatcgttgtt ttcactcgaa acatttgaac ggtactgtgt 1200 aaccatagcc tctttaggcc cgagccctct ccgaacctaa cttcgtattt aggttctata 1260 taaaataaga agggagtgaa acaacgctcg attccattgt tcgaaaacct gcctagttac 1320 ggccaatgat gtgatgttgg tatgagacat gattgattga cagctcacct ctttgaactt 1380 atctcgccgc cgacacacac ccaggcatgc gacaagtgct gggatcgggg cttcttttta 1440 aaatgtttct accctgggta cgggcctgct tcttcataca aaaagttaaa tgacaggaga 1500 tggtcagctt ataatttgat ttgctctatc ccccttctcc acttcgccat taataaaaac 1560 actttgccct ctgccgataa cttgcagaat tttctgtttt cttattacta gtaaaccaaa 1620 tctcggcgcg tgttgtcgtt tttgctttac gccccgtaat ttttggtact aataaaccaa 1680 atctcggggc gtgttgtcgt ttttgcttta cgccccgtaa tttctcggta ttataattac 1740 ttactactag taaaccaaat ctcggggcga gttgtcgttt ttgctttacg ccccgtaatt 1800 tatcggtatt ataattactt actactagta aaccaaatct cggggcgagt tgtcgttttt 1860 gctttacgcc ccgtaattta tcggtattat aattacttag tactagtaaa ccaaatctcg 1920 gggcgagttg tcgtttttgc tttacgcccc gtaattttag taaaccaaat ctcggggcga 1980 gttgtcgttt ttgctttacg ccccgtaatt tatcggtatt ataattactt attactagta 2040 aaccaaatct cggggcgagt tgtcgttttt gctttacgcc ccgtaattta tcggtattat 2100 aattacttac tactagtaaa ccaaatctcg gggcgagttg tcgtttttgc tttacgcccc 2160 gtaatttata ggtattataa ttacttacta ctagtaaacc aaatctcggg gcgagttgtc 2220 gtttttgctt tacgccccgt aatttatagg tattataatt acttactact agtaaaccaa 2280 atctcggggc gagttgtcgt ttttgcttta cgccccgtaa tttcatttaa tagtatagtt 2340 attgttatac tagtaaacca aatgtcgggg cgagttgtca gattgctttc tcgccccgaa 2400 attttgttta ctagtatgtt tttatctata aaattttaaa attctataaa atttcaaaat 2460 aataccacta aactttctcg cccccaattt catttactag tactagtaag ttaatttgct 2520 aagttagcta atatatgaat tccc 2544 // ID Helitron-N12_NV repbase; DNA; NEM; 3005 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Helitron-N12_NV non-autonomous DNA transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW NVREP453; Helitron-N12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 158-1510 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 158-1510 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3005 RA Kapitonov V. and Jurka J.; RT "A family of Helitron-N12_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~95% identical to the consensus. It shares common CC termini with other Helitrons (from Helitron-N4_NV to CC Helitron-N8_NV). XX SQ Sequence 3005 BP; 992 A; 557 C; 538 G; 918 T; 0 other; tagcggagcc agcgcggccg caggccgcgc gcgaagctcc ataggtatag agaaatggta 60 tataactatg cgactcagtt tttttggtca ttgcgcgggt accctgtggt gtcgcccgcc 120 tgcccgtgga gccagcacaa tttgcaataa cttagcaaaa cgccacctca gtgaaataat 180 tatacaagaa tatattttag cactatccga gaatgctaca tacttaataa aaccccgaaa 240 gttgcatcaa aacttacaat tatttagttt ttagtgtttt tgtatttaca ctcacgggaa 300 ccctgcgtct aatttttccc gcgttttgct cttctaactc gcggccgaca ccgtgaattg 360 ataaagtttt tgcattattt tcgtcgtggc taaagccaag aaagaaattc gacacatctt 420 aacactttta taataaaaag acgtacaaac gatggatgga aggacaaagg atgggtttgg 480 aaaaagaagg taagtaagac gtcaatttta tagcctgcac acaggcgcta gtgtgtgggc 540 cgagcgaaaa agtttgtttg tgtgggcagt ttgttgtgga cgctttacga cgtgcgaagc 600 tgggcagttt gttgtggacg ctttacgacg tgcgaagcac ttctttgctc ggccccaagc 660 ccccttccga ctaaaaccgc tcgccacagg gctcctgaac actcgaaagg ctaaaagtcc 720 gattcagcac aaagagcaac cttcaaaagg ctaaacgtcc gattcagcac aaagagcaac 780 actcaaaagg ctaaaagtcc gattcagcac aaagagaacc tttcagcaca aagagtcgaa 840 aggctaaaag tccgattcag cacaaagaga acctgttcgc aggctatcaa ttttataaac 900 ttcgtcggag ctatgaaaaa ctcttgtgtt gatatatttc tagcactcaa acagttaaag 960 ccatgatggg atgttgatgt tttattatac ctagttccta actagtaatt cagctagttt 1020 gttcatacat tatcccataa aaaggataga aattgtgcga ttgattgttc gtaaacaaac 1080 gtcgcgtttg ttttagaaaa tgttgttatt tctttgcttt taattcattc aagaagtgaa 1140 ctaatcttaa gctttttatg ggataacttt ttaactgtaa ataaagaacg atttcttatc 1200 tggagattct tcatcacatt taagttctgt cagctctttt atgaaagata tcgagcgagg 1260 aacggtttta gtttatattt tgtgagttcg aagaacattt aaaatttaaa atgaattctg 1320 gtttaaattt tagaaaaaaa aggttcatga ggggtaatag gttctaaaaa gatctgcttt 1380 acctacacag ttccctttat gcatatgatt ctttttcaca aaaagatatc ttgaataccc 1440 cagctcaacg ttttcataca acatctcaaa actcccatct cttcaatttt catagaaaac 1500 taaagacagc tttttgttgg gagcatttag ttcgatacct atagtttttc tctacagctt 1560 ttcctaagaa aaaggtcaaa aggcaattca acctctggct cattagcccc taaaaaacag 1620 acttcatata ttaattttct gttcaaggtt ctattttaaa ggttacttgg aattattttt 1680 aattttaggt ttatcaatta ggttttgtgc agcataacat ttatatcttt agtattcttc 1740 cgtagcgttt tgtcactgtt ctccaatttt tttcaggcga atcccaactc aagcaagctg 1800 ccagctttaa aggcatgatg ctagggcagg atgtattcat taatacagct aagtaacaaa 1860 aagatagata atagttacaa atgaaaactt gttataaaaa aaaatgaacc aggctaataa 1920 aataaactaa aagtagtcag aaactttgaa aacaagttag agtggtttat ttcattcacc 1980 ctttgacaaa gtggctggta caaaacactg accaacattg gcccttattg caaatggact 2040 aaatgggttt tctagtaaaa aaaatatagt ttcaatttga actaattaac tgcacagggt 2100 tttgtgagca atctactttt caaatagctg atatgaatac agctcaatac ttaggaatct 2160 gagatgatat ttgcaaaaat caacagcaat gtaccatttg acctttcatg caattatttc 2220 aaagataatt tagcactgta catggaagtg atgtgaaatg aaaatatagc tacctttttt 2280 ttaacaaact gcatcttttt gtaatgccac accaagccct attttatgtt ttaacacaaa 2340 aataccaggt gtacataccc ttgaaaccat gatgcttcaa tatgggggtc tagtgggtcc 2400 atggacctcc tcatcgaggg tcagtgtttt gtacgatcca cccaagacaa agtgtcaatt 2460 caaagagtat tagccaaaaa aaaacagtaa agaaggttga taaaactgtt tatccaatat 2520 ttgtaatttc taccaaataa cttttattac ccttcaactg agagaaaatt ataaaaatca 2580 agaaaatcta gtagtagtgc aatgtgaaag gaagaaaggg aatttggaca gtgtaggcaa 2640 gtatggagca catttactgg caaaaacgat atgctaatgt atagaaacgc gttgtgtgct 2700 gatatggttt taaatgttaa agagaataaa aaagcaccca ttttactgta aaaaactaaa 2760 attcattttc aattcttcaa tgttccctat tggatgatac ctccatatac acccaacaag 2820 tttttccggg ttaaacaaca ataaaaatat acatacacac atattccact ctacacctgt 2880 gcatcaagca cttttctatg aacggcttca ctcacacatt acatatatac atacatatat 2940 aggtattata atatggctta aattgattgc atgctggctc cgcttttagg cagtgcctaa 3000 atcta 3005 // ID TE-13_NV repbase; DNA; NEM; 1507 BP. XX AC . XX DT 14-MAR-2011 (Rel. 16.03, Created) DT 14-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-13_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP79; TE-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 306-1386 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 306-1386 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1507 RA Kapitonov V. and Jurka J.; RT "A family of TE-13_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1507 BP; 508 A; 224 C; 227 G; 544 T; 4 other; aactagacgc atggctgcgt gaactcggga ttctcttaaa taagatttct caaataagat 60 ttttttatgt gtagaaggca atagtaaatt cataaagacg ttagtgatac tttgaatgat 120 cactgctaac ggttactaag tttgattaga tatatctaag ctgttggggc tccattgcag 180 agataagctt accctcatat gatttaaatg aaaatgagga caaaacttaa cttcagtata 240 tccacaatcc acagttactt atgtagcctc cactatatgg acgggtacat atctcatgtt 300 gattaaagga aatgtctttc attacaacta acacactatt gttatcctgt cactaagata 360 attattwmaa aaaattcaaa tgtcctatta ataccccata cttactaact atccactact 420 tgggcatgaa ttaactctga agtaccttgg tcttaaaatg taaccttatt aattttgtta 480 aaactgattt acttagactt tgcttatgta cagtaagttg acaatatgct tacagtatgt 540 ccttgaaata aattatattt agttattatc tatagttttt atttagttac cattagacaa 600 tattacttaa ctggacttgt ttgaatgttc aagagaaaag aagtaagctg ttgattttaa 660 tcacattgaa gttaaattgc atmgtatata tatattgtaa tgtaatgaga caactatgta 720 cgtaagttag acacaaaaat attgaaatat tgtttattaa taactaacac tttgaatgga 780 taaacttgat gacaattcta acagtaacat ttggttctwa atgcagtagt acaatggctg 840 ttggcgctgc cgctaatttt tctttcaata ttttgactcg atgtaaattt agctaaaaaa 900 ccgtttgctt gctacttcaa ataattttac attttgaata attagttaat gcagtagata 960 actggctgct actacttata ttgatatttt taactgtaac tttaaaaata acttgtataa 1020 actcaatctt aatcacttta gactccttct atgtgtacat catttatggt aaaaatgctt 1080 taaagtcaat gttataagtt aactatctct tggattttac tagttcagga ctcaccaata 1140 cttctgtgaa gaaatgttca ttgaaatgtc tgagagtgag taaagcaacc aattcaaata 1200 aatatgtctt tgactaccat gtctgagtat agcaatcgaa aaactggaca gttttatatc 1260 ctaaaatagt gaatattaag cttaatatta taaaatacgt aaagctaata cttccttgaa 1320 ggaaaaataa taaaagaagc aatgtttgta ctcatccttg taaacatggc gttactttga 1380 taaacacatg gatgatcgta aacacgtctc ttgtcttatt ttttttatag caagcttact 1440 aacaatcctt gtttctgcgt ttgtcgactt tgttgacatt ctttagttga gttatttgta 1500 atggtgg 1507 // ID Gypsy-67-I_NV repbase; DNA; NEM; 2431 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-67_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67-I_NV; KW Gypsy-67-LTR_NV; Gypsy-67_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2431 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2431 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-67_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 564-564 (2007). XX DR [2] (Consensus) XX SQ Sequence 2431 BP; 687 A; 479 C; 639 G; 626 T; 0 other; ttatgtcgat taccgaaagt tgaacgactt cacgaaaaag gaatcgtatc ctcttccagt 60 gattgatatg ttggactgtt tttcaaattt tagatacgac ttacgacttg aaaagtggat 120 attggcaggt tgagatggac ccaaaggata aggagaaaac tgcttttacg ttgagacaag 180 aactctggcg atttcgggtt atgccatttg gtttgtgtaa cgcaccagcc acattcgaaa 240 gtttgatgga gaaaatcctg gcgggattat cgtgggactc ttgtttgtta tacattgacg 300 acatcattgt ccattcaaca accttagagc cacacattga gaacactgca aaggtctttg 360 aaaggttgag ggaagcaaat ttaagcttta tccgaggagg ggtcttcttt tcaaaacaag 420 ggtcaaatac cttggacatt gtatcatttc agagggcgtg tccaccgatt tagctaaatt 480 ggaagcggtg atttcctggc ctgtaccaaa gaaaaaacga gagctgcaaa gtttcctcgg 540 attgtgtacc tattacagga aatatgtaaa gatgtttgcg gacattgcaa gggttctaca 600 tcggttaaca gagaaaagcg tgccgttcga gtggaccgat gagtgtcaga ctgcttttac 660 tagtttgaag acagcattga cgactgctcc agtgcttgct tatcccacgg cagagggtga 720 ttctgtctta gatactgatg ccagcgcgga cagtattgat gctgaattat cacaagttca 780 ggatggaaag aagaaagtga tcgcgtatta aagcaaaagt ttatctcgtg cggaacggaa 840 ctatagtgtt actagaaaag aactgttggc agcagtaagc taccgaacgt ttccaccact 900 acttatacgg gaggaggttt caattgagaa ctgaccattc tgctcttcct tggattggta 960 gcttcaaaca cccggaagga caaatcgcga gatggattca gacttttcaa cagtatgact 1020 tctctatagt ccatcgcaaa ggcagtttgc atggcaatgc tgacgcactc tcaagacatc 1080 ctttcgaggc gagaagctgt gtatactgtg aaagactaga acgaaaggag agagaatact 1140 gcgagaagga agacgggctt gatgaccatt gttgtggatc atcacgctca gtagcaacaa 1200 cgtgcattat ccggcctgaa gtactagtta aaaggacacg aggagcggac gataacgata 1260 tggcgattaa tcagcgagga gactcggtgc ttggagaaat agtaagtcgg atagagagga 1320 gccttggtcg tccaacgtgg gaagagattt catcattctc tgcagagtta aatgcctact 1380 gtgccctgtg ggaatgtttg gggttaaagg atggtgctct ctatgggtga gatgtcggaa 1440 gtccgatcac cttgcttctc gttgtaccta agagtaagaa ggaagaggtg atgttttccc 1500 ttcatgattc ggtaacggca gggcatttag gaaagaaaaa gaattcgtca acgtgtttac 1560 tggataaggt gtgacagaga tgttggggag tggtgtagaa gatgtgacgt ttgtgctgcg 1620 aggaacggca gaccaagggc tccacttcaa atctactgtg ttggtgagcc gggggaacgt 1680 attgcgatcg atattaccgg gccactacca agaacggaac aagggattcg gtatttgcat 1740 gtcgtaattg actacttctc taagtggcca gaagcctacc caataccaaa ccagtaggcc 1800 gtgacagtgg cggaggttct tgtggctcat tacatctctc gttttggcgt accattggaa 1860 cttcactctg atcaagggag gaatttcgag tcacaagtgt tcctagaagt ctgtaaactg 1920 ctagggatca acaaaactag gaccactcct gcacatccag agtcagacaa catggtcgat 1980 aggtataacc ggactcttaa agattatctc gccaaattta cggctgcgaa tcagcaaact 2040 tgggatcggg acgttccgct cgcactattg gcatatcgtt ctgcagttca tgaggctacc 2100 agttacacgc cagcttgtat gatgttcggt tgtgagttgc gtttaccgat agacctgatg 2160 ttttaatgac caataaggaa tgagagtgga agtgcgcctg agtatttcag agatcttcgt 2220 gagagactgg aagcagtgcg tgctgacgca agggataatc tcaggaagga agcagaaacc 2280 atgaaggatc ggtatgatct ccgcgctaac accgtaggct ttgaacctgg agatcccgtg 2340 tggtaccaca atcctcgccg aactaagggc aaatcccctt ctctaagtaa gacatgggat 2400 ggacctcata tcgtcaccgg aaggctaaat g 2431 // ID Daphne-3_NV repbase; DNA; NEM; 1234 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Daphne-3_NV non-LTR retrotransposon - consensus. XX KW Daphne; Non-LTR Retrotransposon; Transposable Element; NVREP424; KW Daphne-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 532-1234 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 532-1234 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1234 RA Kapitonov V. and Jurka J.; RT "A family of Daphne-3_NV non-LTR retrotransposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~96% identical to the consensus. Its 700-bp CC 3'-terminus was reported originally as the unclassified NVREP424 CC transposable element [1,2]. XX SQ Sequence 1234 BP; 377 A; 301 C; 124 G; 429 T; 3 other; acagtatgtc ataataaatg accatgtctc ttctcataaa accattaagt gtggcgtgcc 60 acasmgatct gtcctggscc cccttctctt tctcatatac ataaatgacc tgtctcatac 120 ttcaaaactt ctttccttca ttctttttgc agatgatact aacatattct tccgacatca 180 aaatatacac agtttaatct ccattgtcaa taaggagctc tctcttgtct ctaaatggtt 240 caatttaaac aaactgacat tacatcctga taaaaccaaa tttattttgt ttcgcccccc 300 aagaaagaaa atcatagttg atcatcctgt caaaattaat aatagtatca tatctcgtgt 360 tgacagtact aagttcttag gagttattat ccatgaaaac ctctcttgga aacagcatat 420 cctaacaatt cgctccaaag tctcaaaagt catcggtata atctccaaag ctagacaatt 480 tctttctcca actacactct tgactctata caactctctt ttcttacctt atcttaatta 540 ttgtacacta atttggggat caacatttga ttcttatacc agacctctat ttctcttaca 600 aaaaaaaaat aatccgtatc atttcttcct caccttggag ggcccataca aaaccactct 660 ttcaaatgta taatctcctg acactgccat ctatatacaa atatcaaaca tcttgctttg 720 ttttctcaca cctttataat ttactacccc tgtctctatc ttcaatcttg tgtgtcaatt 780 ccgatataca caattactcc acacgctcaa agcataattt acataaaaaa cacaccaaat 840 atcacttttc catctcctat caagccccta ctatctggaa tgatattcca ctctccctta 900 gaaattcctt aaaaccccac aacttcagat ccaaactcaa acaccacttc ctggatccat 960 aatcttttct ttttcaccaa cacctggaag tccgctgacg acctctacta caagccaacg 1020 attttagttt agtttagatt agttattgtt attaatatta tattgttatt gtattattta 1080 tatatatttt ttcattgtac caagctatac atcgatcctt cactcctgta ctcttaatat 1140 atctgacatt aagccactta agcctccggc tttggctctt cccatgtatg ttatcaccaa 1200 gttttaccaa taaaaattga ttgattgatt gatt 1234 // ID Helitron-N6_NV repbase; DNA; NEM; 1213 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N6_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N6_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1213 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1213 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N6_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 602-602 (2007). XX DR [2] (Consensus) XX SQ Sequence 1213 BP; 408 A; 210 C; 271 G; 324 T; 0 other; tagcggagct cccacgcgaa gcgccgcgtg agcggagccc catacctaag aaaaagtggt 60 atataaaaca aatatggtaa caaatattgg taacccatcg actcgagttt tcgtgacgcg 120 atgtccgtcc gtcccttaaa agcatcgtat gacaaccaaa cttggcaggt gtcatgtatg 180 tgtcaaggga ggtgcaaaac tgtggtcacg tgatttgtga cgtcatcgat gacgtcacta 240 gaagcaaaaa tatgctgacg tcatcaaaat aaaaaatatt tatatttcac gaaggaaaca 300 tcgtatggca accaaactcg gtaggtgtca tgtaggtgtc aagggggatg caacaatatg 360 gtcacgtgtt gtgtgacgtc atcgatgacg tcacttaaag caaaaaacgt gattaaaagc 420 aaaaacattc atatctcttg aaagaaacat tgtatcacaa ccaaacttgg taggtgtcat 480 gtttgtgtca aggggggtgc aacaatatgg tcacgtgatt gtgacgtcat cgatgacgtc 540 actaaaagca aaaatatgct gacgtcatca aaataaaaac attcatatct catgaaagaa 600 acatcgtatg acaaccaaac ttggtaggtg tcatgtatgt gtcaaggggg gtgcaaaaat 660 atggtcacgt gatgtgtgac gtcatcgatg acgtcactta aagaaaaact tttccgatgt 720 catatctata ttcatatctc ctaaacaaaa cttggtatgt gtcatgtatg tgtcaagggg 780 ggtgcaccaa tatagtcacg tgattgtgac gtcatcaatg acgtcactag aagcaaaaat 840 atgctgacgt catcaaaata aaaaatattt atatttcatt aaagaaacat cgtgtgacaa 900 caaaactcgg taggtgtgat gtatgtttca agtggggtgc aatgagatgg tcacgtgacg 960 tcatcgatga cgtcaataaa ttaaaactac cctgacgccg aaacatcgta tgacaactaa 1020 acttgttatg tgtcatgtag atgtgggggg aagggggtat aacaagttgg tcgcgtgatc 1080 tgtgaaatcg ttgacgtcgt caaaaacaga aataataata atatttaata ttttttaaat 1140 tattaagcga aaataagcaa agatttggtc gtttggagct ccgcttttag gcaatgccta 1200 aatctatata tta 1213 // ID Harbinger-N4A_NV repbase; DNA; NEM; 1244 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 01-JUN-2007 (Rel. 12.05, Last updated, Version 1) XX DE A subfamily of non-autonomous Harbinger transposons - a DE consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP11; Harbinger-N4_NV; Harbinger-N4A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1244 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 179-179 (2007). XX DR [1] (Consensus) XX CC Harbinger-N4A_NV is a consensus sequence of a subfamily of the CC non-autonomous Harbinger-N4_NV. This subfamily is relatively old; CC its copies are ~7% divergent from the consensus sequence. The CC Harbinger-N4A_NV transposon is characterized by 30-bp imperfect CC TIRs and TWA target site duplications. XX SQ Sequence 1244 BP; 302 A; 257 C; 271 G; 411 T; 3 other; gggaagggtc attatttaac ggggggaggg ctgctatgtt tggggggagg gttgcgattt 60 tttgagcgtc gatttggggg agggcctcaa attttgatac agggtttagg ggagggcctt 120 attttttgaa caggtattct gatcaatttc cgagcctcct aaaagtctgg aatttcaaaa 180 tttttctggg gagaacccca gaccccctac aaaaaaataa ataaatgaat gtgatgcgcc 240 ttctgcttgc actttcatga cttgcgtttc gctggcgttg aaaaccatta tcccctaaag 300 tgtggcttct actttttttt atcttttgca gttttggttt tattaacttc aatcactgaa 360 tttgcgaatt tcaaattcat gtcaaagtcc ccccccctta cctttaattc gattggtggt 420 atgaaaagat atgtaaataa gatttcagtt gggaaggagc taatgatgct attttctatt 480 taggttttaa caataatggg cattttatat aatttggaaa tggcaaaatt ttcacggggg 540 agcatgcccc cagaccctcc tatacaatag tatttacacc cctgaaaaat gggctcgaaa 600 gcaacacttc tcctggcttg gtggtgtttt aggccagctc cgccgcccct tcatgggcat 660 gcctaagtca gtgccctccc tccccccccc ycaacacaac aatttggcat gcggggggag 720 ggggcggtgc tctgtctccc cacaatttga atttgaaaca gcgacattca ggccatattc 780 cggttaacaa attataaagc atatattttt cttcttggca aagtgcccaa tcccctttct 840 ttgtttgtac tgcacagatt gctcgttatt acaattgtgg gtttactaca tttgtgggca 900 acttcttatt acaattgtgg gtgtttatta catttgtgng tggctctgca ctcatacata 960 cggttatata atttgctgtt ttctgrtgct cctggaagaa cgtgccgtac gtagagcatc 1020 tcacaactag agtataattt acaataaact aaccaatacg ctttttttag atagcttttt 1080 gttttgtttt gttctggggg agggccttaa tttttggtcg cctttttggg ggagggtcac 1140 catttttgtg ctttagattg ggggagggtc gaaatttttg aaccagaaaa aattcaactt 1200 agcagccctc cccccctctc ccgataaata atgacctttc ccta 1244 // ID Gypsy-20-LTR_NV repbase; DNA; NEM; 145 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-20_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20-I_NV; KW Gypsy-20-LTR_NV; Gypsy-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-145 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-145 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-20_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 472-472 (2007). XX DR [2] (Consensus) XX SQ Sequence 145 BP; 33 A; 33 C; 34 G; 45 T; 0 other; tgtagtgtcc gccgcgttgc attatggatt gttaaggtgc gcaatgcacc atggtagaac 60 acatgtcaga gatccgccat cttgtattaa atgtggaaga ccacgagtct gtttcttttt 120 gctttgttcc ttgccgaaca ccaca 145 // ID Kolobok-N21_NV repbase; DNA; NEM; 850 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N21_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP404; Kolobok-N21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-850 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-850 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-850 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N21_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 84-95% identical to the consensus. It was reported CC originally as the unclassified NVREP404 transposable element CC [1,2]. XX SQ Sequence 850 BP; 250 A; 170 C; 173 G; 257 T; 0 other; gggtgttcgg aagttaggtt gccagggaaa ttttaaatta ccgtagattt gttagaaaaa 60 gagttttact gctgaaattg gtcaagtgga ctagtgactc atcgggctac atattgatga 120 cgtcattagg tgacgtcatc acagcagaaa aaaacgttta tttgcctttc ctttaatttt 180 tttcaaagga tttttagttc agagtattca ttatttcttt ctgaacaaac gtgagcatgg 240 atttgaaaaa atattgaaaa atcaattttt tagaccaatt aatgtgcaag ccattggggt 300 attttggtca tatgtttttc attttgacct gtatgcctta atccatgctc agttttaaca 360 agaaaagggt aaacaatatt tccgtactaa aaattttcac gatttcaaaa atttaaggtg 420 ccattttacc ttttttttgt gcgaccggaa gtcgttttta acgcatgcgc tgtggcccag 480 actatttgga ggcgcggctg cttagccacc aaacctagtg cacggcgctc tccacgctgc 540 cttcagacca gcgactttgt gctgccaaag cacatctttt ccttttattg ctacgcccag 600 ttggcggcat tttagcatat gagcatggta aattgtataa aaaataataa acccttaaaa 660 aaggagacat cttgttgcaa aagggggaaa aatgaaacat ttttgaccgg cgaaaagttt 720 gtaaacaaac gcgcgcgccc tgaaaagccc gccattttca aaccggaagc gattttttcc 780 cgcctaaatt gcgagcgcgc gcgtcagcgt agcaaccaag gtcgcataac aacctaaatt 840 ccgaacaccc 850 // ID Copia-1-I_NV repbase; DNA; NEM; 4080 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Copia-1_NV autonomous DE LTR Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs; KW Copia-1-I_NV; Copia-1-LTR_NV; Copia-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4080 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4080 RA Kapitonov V.V. and Jurka J.; RT "Copia-1_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 380-380 (2007). XX DR [2] (Consensus) XX CC Copia-1_NV is a family of recently transposed retrotransposons. CC Copia-1-I_NV is the internal portion of Copia-1_NV flanked by the CC Copia-1-LTR_NV long terminal repeats. It encodes the 1294-aa CC polyprotein composed of the protease, integrase, reverse CC transcriptase and RNase H domains. XX FH Key Location/Qualifiers FT CDS 103..3984 FT /product="Copia-1-I_NV_1p" FT /translation="MLKLKDTILPSTDAPDATKNEECYAELIQFLDNKSLS FT LVMREATDDGRKALKILREFYASQSKPRIITLYTELTSLEMGVNETVTEYF FT IRAEKAITALRNAKETLSDGLIIAMILKGLPESYKPLAIHITQSAGEISFS FT TFKGHLRSYEETEKFSSKGKADQQAASPAPRACYGCGQTSHIRDCPKKSET FT TKWCNYHKSSNHSDGECKRHQQKGDTTKKVSVMDDTENNEEKHTFTFNVKD FT HSNKVLNNPKGMLVDTGATSHIVTTDTITRIDGTFKPSEHCMELADGTRTR FT NIAVKRGDAMVTLKDVNGRHVNAVLKGALYIPSYPQDIFSVKAATANGAEV FT KFQTGQNELIHKDGTAFTIEEHNKLYYLNTVEPLYGNDSYDKVSVSHDIYT FT WHEILGHCNFEDVLKTKEVVEGMNMSGKIDKSKLTCNTCIEGKFVNNRNRK FT PDARATRPLERVHTDLAGPINPVSREGFKYSISFTDDYSGAVFVYFLKEKS FT DSVQAAQKFLADSAPYGEIKWMCIRSDNGGEFISDDFQALLRERSIKHELS FT CPHSPHQNGTAERQWRTLFEMGRCLLIEKQVPKFLWPYAVQTAAHIRNRCY FT NRRTENTPYFMLTGKKPDLSRMGIFGSECYTYNHNHKKLDSRGVRGVFVGY FT DKNSPAYLVYHPDKGKVLKHRLIKFISKDCIEQETQTEGLIHNEMPVGNVH FT EGVGSEQLVNSNGAIKSHPDVGKVDGEASCTPGDSEQVDNQSHTSGRPQRE FT RQPPKYLDDYVTSVSDSDDITYSSVDYCYRVSGVPQSYFEAMASTNATEWN FT QAMAEEMGSLQENDTFELTSLPEGVNPVGGKWVYIIKEDAGGREVFKARYV FT AKGYSQVEGIDYQETFAPTANITSIRVLMQLAAQYDLTIHQMDVKTAYLHA FT PIDQEIYMKQPEGFEVISENGEKLVYKLKKSLYGLKQSGRNWNKLLHESLM FT ESGFNRNPSDHCVYSKLVGNEIVILIVWVDDLIIASSDMGILNDFKENMKR FT HFKMKDLGQISHFLGIDFNQAPGQITMGQSRYLLKVLHRFEMEGCKPRTTP FT CEQNAGENSEEADPKKYREIVGSLIYAMVCTRPDISWIVSKLSRKLSCPTA FT ADMTDAKHVLRYLKGTIDYELCFKKSSDGLSLVAYSDSDWASSEDDRKSTT FT GYCFSLSPEGAVISWKSRRQPTVALSSCEAEYIGLASTTEESLYLSQLLSN FT MGKESYSCTKLYGDNQGAIALSKNPVNRQRSKHIDVRHHFLRDAVSNGKID FT IVFCPTEDMVADIFTKPTSKVKLTKFKKFLFGC" XX SQ Sequence 4080 BP; 1352 A; 796 C; 969 G; 963 T; 0 other; ggttatgggc ccaggacgga ctcgaaatgg aacagattga cgttcgacgg agacgagagc 60 aagtatgaat tgtgggaggc caaatttttg ggacatttac ggatgctgaa attgaaagat 120 acgatcttgc catcgacgga tgcgcctgac gcgacaaaga acgaagaatg ctatgcggaa 180 cttatacagt tcttagacaa taaaagcctc tcactagtaa tgagagaagc tactgacgac 240 ggcaggaaag ccttaaagat actacgggag ttttatgcga gccaaagcaa gcctcgtatc 300 ataacactgt acactgaact aacatcactc gaaatgggag taaacgaaac agtcaccgag 360 tattttattc gtgctgagaa ggctatcact gctctcagaa acgcaaagga aacactcagt 420 gatgggttga tcatcgcaat gattctgaaa gggttaccag aatcctataa accgctagct 480 atacacatca ctcaaagcgc tggggagata tcattctcta cattcaaagg tcacctgaga 540 agctatgaag aaacagagaa atttagcagt aaggggaaag cagaccagca ggctgcgtct 600 ccagcaccac gtgcatgcta tggttgtggt caaacttcgc acatcaggga ctgcccaaag 660 aaaagtgaaa caacaaaatg gtgcaactat cacaagagtt ctaaccattc cgatggagaa 720 tgtaaaaggc accaacagaa aggagacaca acaaagaaag tttctgtcat ggatgataca 780 gaaaataatg aggagaaaca tactttcaca tttaatgtga aggatcacag taacaaagtt 840 ctcaacaacc ccaagggcat gctagttgac actggggcta catctcatat cgttacaact 900 gatacgatca caaggatcga tggaacattc aaaccaagtg aacattgtat ggaattagct 960 gatggaacaa ggaccaggaa cattgccgta aagcgaggag acgcaatggt aaccctcaag 1020 gatgtgaatg gcagacatgt aaacgctgtg ctgaagggag cattgtacat accatcgtac 1080 ccccaagaca tcttctctgt gaaggctgca actgcaaatg gggcagaagt gaagttccaa 1140 actggacaga atgaactcat ccataaggat ggtactgcat ttacaattga ggaacataat 1200 aagttgtact atttgaacac tgtagaacca ctttatggta atgacagcta tgataaggta 1260 agcgtttcac atgacatata cacatggcat gaaatattag gccactgcaa ttttgaggat 1320 gtcttaaaga caaaggaggt agtagaggga atgaatatgt ctggaaagat agataagtct 1380 aagttaactt gcaacacctg catcgagggg aagtttgtaa ataacagaaa tagaaagcca 1440 gatgctaggg ctaccagacc cttagagagg gttcacactg acctggcggg ccctataaac 1500 ccagtatcaa gggagggttt taagtatagt atctcattca cagatgatta ttctggggca 1560 gtatttgtgt attttctcaa agagaaaagt gattcagtgc aagcagctca gaaattctta 1620 gcagattctg ccccttatgg agaaattaaa tggatgtgca tacggtcaga taatgggggc 1680 gagtttatta gcgatgattt tcaggcactt ctccgagaga gatccattaa acatgagtta 1740 tcatgtcccc attccccaca tcagaatgga acagctgaaa ggcagtggcg aaccctgttt 1800 gagatgggca gatgtttgct catagagaaa caggtgccaa agttcttgtg gccatatgca 1860 gttcaaactg ctgcacacat taggaatagg tgctataaca ggagaacaga gaacacacct 1920 tatttcatgc taacaggaaa gaaacctgac ctttccagaa tgggaatatt cggatcagaa 1980 tgttacacgt acaatcacaa ccataagaaa ttagactctc gcggtgtgag aggggtattc 2040 gtagggtatg acaagaacag cccggcatac ctagtgtacc acccagataa ggggaaggtg 2100 ttaaagcaca ggctcattaa gttcatcagt aaggattgca tcgagcaaga aactcaaact 2160 gaaggcctca ttcacaatga aatgccagtg ggcaatgttc atgaaggggt tggatcagaa 2220 caactagtca actccaatgg agccatcaaa agccacccag atgtgggcaa ggtggatggt 2280 gaagctagtt gtacacccgg tgatagcgag caggtagata atcagagtca caccagtggg 2340 cgtccacaaa gagagagaca accccctaag tatttggatg attatgttac cagtgtaagt 2400 gatagtgatg acataactta ttccagtgtt gattattgtt acagagtttc aggggtgcca 2460 caaagttact ttgaggctat ggcctcaaca aacgctacag aatggaacca agccatggcc 2520 gaagaaatgg ggtcacttca agaaaatgac acatttgagc taacctccct cccggagggt 2580 gtgaacccag tggggggaaa atgggtatac atcattaaag aagatgcagg aggcagggaa 2640 gtatttaaag ctagatatgt agcaaagggg tatagccaag ttgaaggaat tgattaccag 2700 gagaccttcg ctcctactgc gaacatcacc tcaattaggg ttctaatgca attagcagcg 2760 cagtatgacc tcactatcca tcaaatggat gtcaaaacag cgtacctaca tgcaccaata 2820 gatcaggaaa tatacatgaa acaaccagaa ggcttcgaag tgatctccga aaatggagaa 2880 aagttagtgt ataagttaaa gaaatccctt tacggcctaa aacagtcagg cagaaactgg 2940 aataagcttc tgcatgaaag tctgatggag agtggtttta acaggaatcc atcagaccac 3000 tgcgtctact ctaagctagt aggcaatgaa attgtcattc tcatagtctg ggtagatgat 3060 ctgatcattg catcaagtga catgggaatc ctcaatgact tcaaggaaaa tatgaagagg 3120 cacttcaaaa tgaaagattt aggccagatt tcccacttct taggtattga tttcaaccag 3180 gctccaggac agattaccat gggtcagagt agatacctac ttaaggtcct gcacagattt 3240 gaaatggagg gttgtaagcc cagaacaacg ccatgtgagc aaaatgctgg agagaacagt 3300 gaagaggctg atcctaagaa gtatagggag atagtaggaa gccttattta tgctatggtg 3360 tgtaccagac cagacatcag ttggattgtt agcaaactct cacggaaatt gtcttgcccc 3420 acagccgcag atatgactga tgctaaacat gtccttagat accttaaagg caccatagat 3480 tatgaattat gttttaagaa gtctagtgat ggtttgagcc ttgttgcata tagcgattca 3540 gactgggcat catcagagga tgacagaaag agtacgaccg gatactgctt tagcctttcc 3600 ccagagggtg ctgtcatttc atggaaatcc agaaggcaac ccacagttgc cctttcttcc 3660 tgtgaggctg agtacatagg attagcttct acaaccgagg agagcctgta cctaagtcag 3720 ctattaagta acatgggaaa ggaatcatat tcatgcacta agctctatgg ggataatcag 3780 ggggctattg cacttagtaa aaatcctgta aacaggcaaa ggtctaagca catcgatgtc 3840 agacaccact tcctgcgtga tgcggtctca aatggcaaaa tcgatattgt gttttgcccc 3900 acagaggaca tggtggctga cattttcacc aaaccaacca gcaaggtcaa actaacgaaa 3960 ttcaagaaat ttctgtttgg gtgctaaaac tgtaagatca gcttattacc tataacattt 4020 attgtagaat attgtaatca cgttgtcatt taggtttaca tcataagaaa caagtggggg 4080 // ID BEL-8-I_NV repbase; DNA; NEM; 4381 BP. XX AC . XX DT 11-MAR-2011 (Rel. 16.03, Created) DT 11-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Internal portion of the BEL-8_NV autonomous LTR Retrotransposon - DE consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-8_NV; KW BEL-8-LTR_NV; BEL-8-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4381 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4381 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-4381 RA Kapitonov V. and Jurka J.; RT "A family of BEL-8_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (11-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 4381 BP; 1369 A; 1023 C; 1160 G; 809 T; 20 other; gtggacaaca gtcacatgtt gtctgttatt gagcgcaaga tgagtgctga tgatcggaaa 60 gtatggtcgc gcgagctcga acgtgataaa aaaacagcga ctctcgaagg gctgttacag 120 tggatgacgt cggagatgaa gtcaagaatg agagccaccg cagcggtacg cagcggcaat 180 actacatacc gaggaggagt ttatcagttc aaggctgacg agcaggagaa cccccgattt 240 aaatgttggc actgcaaaaa ttcagagcac tggccagacc aatgtccaaa gtttgcggca 300 ctgacatatg aaaagcgcat gaaaacagcc aaagaaaatc acgtgtgctt cagttgcctg 360 aaagtggccg gccgcaatca caaagcttcc acctgtagca ggaaaaaagt atgcaacaag 420 tccgaaaacg gcgaacattg ccaggcattc catcatccct tgctacacaa gacaattcct 480 gtaagcgtcg gaacggctct tgaaagcgaa aatacaagcg tcatcctacc agtgttgaca 540 gcgaacatcc acggtaagaa cggcctacaa aagcaagcta acgttctgct agataccgga 600 gcacaaataa gtttaataag gaatgacacc gcggatttac taggcttagt cggaaaggat 660 acgtacatca ctatcaccaa agtaggggga gaagacgaga gtatgaaaac gaaggtttat 720 aaagttcctg tttgttccaa tggaagaagc aagacataca cagtaaaagc tatcggcatc 780 gacaaaatca gcgacgacgt gaaggcggta gaaatgaaaa gcattgcaaa gcacttgggt 840 ctggaaaatg aacgaatccg ccgtggaaaa aggccgcgta gatctgctta tcggaattga 900 ccatgcccag ctacacacgg gaccatcgaa acaatcagac aagctcgtag cgcgcaatac 960 gcctttggga tgggtagtat ttggaggcag tgcagccgac acggagggag tcagtcaagt 1020 gtaccacgtg gctcttgcgc cacagctgga cctagcgaca ttctggaaaa cggagtcaat 1080 gggagttgaa gtcaaaccgt gcgtctgtga ggctgataag ctaagtcaag tggaacgcga 1140 agagacggaa gtgattagta actcgtgcag aaaagtcgga aatcaatggg aaatcccgta 1200 cccgtggaaa aaggatccga gtcagctccc agacaacaaa ccagctgcag taaaaaggtt 1260 ggaagcgaca gaaaggcgtc tgttaaaaaa cccggatcac gctgtcgcct ataacaagca 1320 aatggaagaa atgtgtgaga tgaatttcgc aaggaagcta acagaagaag aagttaaaag 1380 ttaccaggga ccagtgcatt atatcagcca tcacggggtg gcacggccag agagtgacag 1440 cacccccctg aggattgtgt ttaacacgtc agcaacctac caagggcatg cattgaacga 1500 ctactggatg aagggaccgg acttactgaa cgacctgttc ggtgtacttt taagattccg 1560 ggaggggcaa tgtgcggtga tcggtgacct gtcaaaaatg taccatagaa tactaatccc 1620 ggaagcagac cagcacgtac atcgttactt atggagaaat ctggagacag aaagaccgcc 1680 agatgtattt gttaagacgg tcctcacgtt cggagacaaa ccagcacccg cgatggccca 1740 aatcgcgcta cgtaaaacag ctgaagaagg cgagaaggag tacccagaag cggccaaagt 1800 gctaaaggaa gacacgtaca tggacgacat ctgtcnctca gaagaaacmc caggtaaggt 1860 gcaamaactg gtaaaagacc tggacaaagt gctncagaac ggtggatttc atgtaaagaa 1920 atggacgacg agcsgaagtg caaaggacga cgacgccgcc gagctagacc tgttnaagac 1980 agaacacgag agagaaagtc cttggaatcg cgtgggacag taagactgat gtgttgcggt 2040 ttaaagtaca gaagcaatct cacagcactt cagacggaaa agagaagggt ccatggacca 2100 agagaaagat ccttagccgc gtagcacgcc tatatgatcc aatagggtac acagcagccg 2160 tcgtcatcaa agccaagatc kgaattcaga agttatggca gctaggctat gagtgggatc 2220 aacctatnga gcccccgctt gcacagacat gggaagcgtt cttcacagat ctagacgagc 2280 ttaataakan agagctcccg agntgtctca ctccaccaaa cgcagttggc ctgccaacgc 2340 tctgcatatt ctcggatgca tcgagagaag cctttggagc agttgcatat ttgakatggc 2400 agscaagcgt tgggtcgtat gaagtgagat ttgtagcagc caaatcaaga gtcgccccac 2460 tcaaggagtt aacaattcca aggctagagc tccaagcagc agtactggca gcaagattgc 2520 accagaccct acaagaggaa cttcgcatag aatgtgaaaa ggctatcctg tttactgaca 2580 gtatgattgt ttactcnngg gtaakagggc ctccgaggag tttcaagccc tttgtatctg 2640 cgagaataag tgaaatccaa gacaagaccg acccaaacca gtggcgccac atccccggaa 2700 gtgcaaatgt tgctgatgac gtctctcgag gcctacckgt tcaagaactc aagggaaggt 2760 ggacccaagg cccagccttt ctacagagca atgaagatga atggccacag gaagccaagt 2820 atmaggaacc agataacgag tccgaccaat cggagagacg aaaggagaaa gtatgcgcag 2880 tgacaggaag agcagaagag gcgatcgatg tcagcaagtt ctcggaatgg agaagactcg 2940 tccgcgtmac agctagaatt caaaggctgg cagagaaaat caggttgcga aagtatgaac 3000 aagaaggaag gcaaggcccc ttggcgccag aagaactgaa aaaggcggaa gaacactgga 3060 taaagaagat gcaagataca cttcacggtc gtcacgagaa aggcgaattc gcgccgttat 3120 ccccgtttgt cgacgacaaa sgcatcatcc gtgtcggcgg acgtgtggat gcagcgttag 3180 tatcatatga caccaggcac cctattctgt tgccaagcga ccaccgagga gccctactga 3240 taaagcgtca cgtccacaaa catggacacc tcggagtcgc cgccaccaca gcaaaaatca 3300 gaggcaagta ctggatcgtc aagggcaaca agctgagtaa gattgtgaag aaggaatgtg 3360 tgttctgtaa acgactagcc caccagacag agacacagat aatgtcagcc ctacctcagc 3420 tccggctagc gccctacacc ccaccgtttt tccacacatc gtgcgactat tttggtccta 3480 tcaatgtccg gatcggccga aacaagtccg acaagtatta tggagtaatc ttcacgtgtc 3540 tgaatacaag agctgtgcat ttggagatgg ccgttgacct ctccaccatg gatttcctac 3600 aggtcctccg ccgattcttc tcgatcagag gatacccagc cacagtgtta agtgataacg 3660 gcagccaaat ggtcggcgca gaaagagagc tgcgagaact aatcaagggt ctaaacgacg 3720 atcagctgcg ccaattcaac gcggaaaagg gcataggtgg atcttcatca ccccagcgca 3780 cctcaccaga atggctgcgc ggaagcgtta gtcaagacat gcaagacggc cctcaagaaa 3840 gcagttggcg aacagaccct cacgccaatg gagctataca catgtctact tgaagctgga 3900 aactagtgaa cagaggccga aggacgcatc cctaatgacc cagacgacgg gaagtacctc 3960 tgtccaaatg acatactgtt aggccgggcc ccctcagacg taccccaagg tccattcaga 4020 gagaccccca acccgcggca gagagtggaa ttcgtccaga ggatcgtcga gtccttctgg 4080 aaacgatggc atcgagatgt gttcccggta cttgtgccaa caaagaaatg gcgctcagaa 4140 atccggaacg ttcaagtcgg ggacattgtt gtagtaagtg acagcaatgc actgagagga 4200 aagtggagca ccggaagagt aactgaagtt tatcccgggc ctgacggcaa ggtgcgcaac 4260 gtcaaagtac aaacagcgac cggaaagtac agtcgtccag tcaccaagat tgctgtgatc 4320 caggctgcag acgaaaagct actgtagatt gataaggact acgcccttat ggggcggaga 4380 g 4381 // ID Gypsy-7-I_NV repbase; DNA; NEM; 4373 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-7_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7-I_NV; KW Gypsy-7-LTR_NV; Gypsy-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4373 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4373 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-7_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 578-578 (2007). XX DR [2] (Consensus) XX SQ Sequence 4373 BP; 1378 A; 890 C; 983 G; 1122 T; 0 other; tggtggcagc gtggttagct aatttatctt gatctcaact ggaacttcaa gttgtgggct 60 gtgttttgac gaatttcctt gctaaattcg cgttcaaaac tcgctcgact ctcgacctca 120 gaccacgtgg attgaaccta cactgctctg tactgtgcca tgcctgctac tggcgaatct 180 gaagagactc ctccagctcc tccacctgca gcatcatctt ttcagccggg ttatgccttc 240 aaaccgcctg agcccgtgaa attggcaaag aatggagttg aaagttggaa aatatggaaa 300 cagctgtggc agcattattg tatcgtctct aacgccgatt cacactcgcc tcaattcaag 360 aaatctctct tgatctctac catgggaata gaagctttac aaatctacaa tggctgtgac 420 cctgcagaaa ctgacactgc taaagatatc ctaaccaaac ttgatgctca catacttggt 480 gaaaccaacg agaccttcga gaggtacaag ttcaacactc gagtccagaa acctgatgag 540 agtattgaca gctatgttgc aagcctgaag acattggccg agacttgcaa tttctgtgag 600 tgcttgaaaa cttccttact gagggataga gtggtacttg gtgtgaaaga tgatcatacc 660 agaaagcgtc tgctgcaaga aggaaaactc actctacaga aagcacttga catttgtcac 720 agttatgaga aaacgtctga tcaactgaag attatttctg gaaaggaaga ggaggtacac 780 cgattgaata taaacaagca aaaaacaaaa ggagcttcac atggtcaaag gaacaagcca 840 gtcggtaatg gtaaacctgg aggcacgaat cctcgtcaag ctgctaaatg caaattttgt 900 ggctattctc acactctaaa gaaggaattc tgcaaagctt gggggaagag atgcaataat 960 tgcaaggctc ccaaccattt ctcgagttgc tgtccaagtt tgggtggcaa gaaacaagtc 1020 catactgttg gtgacggatc tgactccgat tcctctgctg aaatggtatg cccagtcata 1080 tctgaatcaa ttaactctgt ctctagtggt cccttatatg ctgagatgtg tctaaaagat 1140 ggacggagag tcaaattcca ggttgattgc ggtgccacag tcaatgttat aaatcagaaa 1200 tatgtgccgc aaaacactca actccaagaa tcgaaaaata cactgaacat gtacaacaaa 1260 actactctta aaccagtggg aaagtgtcgg attatcacta taaatctgat tacgaagaag 1320 aagtataatg tcatgtttga agttgtgaaa gaggatttaa cacccttgct tagcagaaaa 1380 gcagcggaac agatgaagct catcacggtc aactatgata acttcaagca ggtccatgta 1440 gtcgctgatg gattcacaga attagtgact gaatacaaag ctgtatttga tgacactgct 1500 gtaggatgtt tctcaggaaa agtaaatctc aaggttgatg gcaatgccgt gcctactcaa 1560 agtccaccac gacgagtacc tatcagtgtt aaacctgcac ttgagaaaga gttagacaac 1620 cttgtcaagc ttggagtcct gaagcctgta actgagccaa ctcaatggtg ctcacagatc 1680 tctatacaga agaagaagaa tgaccagctc aggatctgtc ttgacccaag agtcttgaat 1740 gaagctcttc agagggaaat ataccctctc ccgacaattg atgatatcct gcctgagctc 1800 gccaatgcta agctgttcag taagtttgat cttgctcatg gttactggca ctgtgaactt 1860 gatgaagaga gtagttacat gaccacattc atcactgtga atggcagatt tcgttggtgt 1920 cgtctcccat ttggtctcaa agtcagttct gagatattcc agcgtaagct catggagagt 1980 ctatcaggtc ttcgtggagt ggtctgtgtg gctgatgaca ttctagttta tggacattct 2040 gagggtgatc atgatgagaa attgagaaat ctacttgatg tttgtgctag aaataacatt 2100 aagctgaatc accagaagag tgtgttcaag accactgaag ttgagttcct tggtcacgtc 2160 gtgacaagtg agggtctaaa acctgatatg aagaaagtcg aagccattct taaaatggaa 2220 aaccccactg atgttgaggg agctcgacgt gtccagggaa tggtaactta tctcgcaaag 2280 ttccttccac aactctccac ggtaatggat cctattcgtc gactcactag acaagatgtg 2340 gaatgggaat ggagtgagga acaggatcat gcgatgaaag aaataaagag actagtgact 2400 acagctcctg tacttgctta ttatgatcct gacaaagaac ttgtgattca atgtgatgcc 2460 tcgagcactg gtttaggcac tgttttacta caagaaggaa agccgctgtg ttatgccagt 2520 cgtgccctta ctactacgga atgcgggtac gcgcaaattg agaaagagtg cctggcaatt 2580 gtgttctcgc tggaacgttt ccaccaatat acgtttggac ggaaaaccat tgtgcatagt 2640 gatcataaac cactggaaat gattgtacgc aagccactgc acaagtcccc aaagcgtctt 2700 caaggtatga tgcttagact tatacagtat gacattgaag ttgtatataa gaagggcaag 2760 gagatgtaca tagctgatac tttatctcgt gcatacttgc ctgatgatac tgaacacaag 2820 gatagttttg ctaagattaa tgctgttggt cacctaagaa ttagagaaga aaggcttaga 2880 cagctaaaga aagccactga aacggatgat actctgcaaa ctctgaaatc agtcattctt 2940 aaaggatggc cagactcgag acaggaactg cctactcagg ttacaccata cttttcatat 3000 agagatgaac tgaccttaca tgatggattg atctttaagg gagaacgagt catcgttcct 3060 gagagcatgc gtaaggagat caaagaccat ctccacatat cacatcttgg aggtgagagt 3120 atgttaagac gtgcacgtga atgcatattt tggcctggta tgtctgcaga aatcaaacag 3180 ctagcaagtg tttgtgatgc ctgtcaaaca tttgctaaag ctcaacagaa agaaacactc 3240 ataactatag aagctaaagc accatgggaa attgttggtg ttgatttatt ctcatggaac 3300 aacaaagact acctactaac agttgactat tttagtggat actgggaagt tgaccttctt 3360 aagaaaactg actcccctgc agtgattagg aaactgaaac aacacttctc aagatatggt 3420 gttcctgtac aactagtcag tgatggagga cctcagtttg atgccaaaga gtttgaggac 3480 tttgcttatg aatgggactt tgagcataat ctatcttcac ctgggcatcc aaatgcaaat 3540 ggaaaagttg agtctggggt aaaagcagca aaggctatgc tctcaaaatg tgctcaagac 3600 aaaacagacc cccagctagc actccttgag ataagaaaca caccaactca aggagcagga 3660 agcagcccag cccaacgcct tctcaatcgt cgaactaaat ctatattacc catgactgat 3720 gtacaactcc aacctagggg aatggatttt ctgaaggagg accggtgtcg gctcaagttg 3780 gaacaacaac gacagtgtaa gaactataac aagaatgcta aggatcttgg aattttggaa 3840 gagggggata ctatcagact gaaacctttt agaaaaggca acaaaaaatg ggaaaagggt 3900 gtggttgtta ggagactcga tgaaaggtcg tatgacatcg aaacgccttc tgggaagtat 3960 agaagaaacc gaatcgatct aaggaaaact tcggaaactc aacctgaatt gtcgtcaagg 4020 aaaccagaag tagtactacc acccgcggaa atggaatcta gtactaccac ccaatcacca 4080 gaaacaccag cgcaagtgga aacacctaat gcggttgctg aggaacagac accacctata 4140 atacccatac ggagatcctc acggacaact acgcaaccaa gctaccttag ggattatgtc 4200 acgagttaaa acaagagact aatctgatgt taaatagttg attgtatctt ttattcttat 4260 tgtttacatt ttgtctagaa ctgagaacaa tgtttatcag cacgttgcta tacgcaagga 4320 caattgttag ttatgttata agtatctgtt tcactttctc aaaagagaaa gga 4373 // ID DNA-2-4_NV repbase; DNA; NEM; 684 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-2-4_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-2-4_NV; NVREP281. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-684 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-684 RA Kapitonov V. and Jurka J.; RT "DNA-2-4_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 389-389 (2008). XX DR [2] (Consensus) XX CC DNA-2-4_NV elements are flanked by 2-bp TSDs. XX SQ Sequence 684 BP; 215 A; 128 C; 134 G; 207 T; 0 other; ctcaggtgta ttaaggactg acttgagact tggtggggct tatacgcgga caaaatctgt 60 ttttgctaat atctcccaaa cagaaatagc tatgatcacc aaacttggca gctacaacat 120 tgatgtcggt ccgaagatta ttttatagta tgttgccatg gcaaccaatt taaggaggtt 180 taagactcaa tttacaattt ttgcattcaa gcaaaaatgg ggaatacaca acgacaatag 240 agaaagcctt aaatggtata tttataatcg ccatgaaatt ccccacatca tgctgtcttt 300 taatcgtgtc cagcgtcacg tgaccgtgag aaccgttgcc atggaaacat agttttgttt 360 gtatttcagc taatgctgta ggtggacagc cttaaaagac agtacgataa gaagactact 420 atagggattg aaaatatgca tttacatttg aaatccacta tgcttctgta ttccccattt 480 tccattgaat gtagaaagcg aaaaattacg ctcgagccac cttaaatcgg ttgccatagt 540 aacaaaattt gtcaaaatgt tgagatccat gcgaataaag tgcttgccaa ttttggtttc 600 attagcacct tgtgtccccg agatattgat gaaaatgtgt ttttcaacgt ataagcctgt 660 aagtcaggcc ttaatatacc tgag 684 // ID Harbinger-N23_NV repbase; DNA; NEM; 216 BP. XX AC . XX DT 23-FEB-2011 (Rel. 16.02, Created) DT 23-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N23_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TwA TSD; NVREP159; Harbinger-N23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-216 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-216 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-216 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N23_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC The genome contains ~200 copies of Harbinger-N23_NV. Identity of CC copies to the consenus sequence varies from 77% to 97%. The CC consensus was built from multiple alignment of top 27 copies that CC are most similar to it (average identity 92%). However, another CC consenus sequence built from 26 sequences most divergent from the CC first consensus (~81% identity) is 96% identical to this CC consensus. This pattern of long-term transposition of pretty much CC the same sequence is typical for many different families of CC transposons in the nematostella genome. Originally, this family CC was reported as the NVREP159 unclassified DNA transposon [1,2]. XX SQ Sequence 216 BP; 49 A; 62 C; 60 G; 45 T; 0 other; agcccggcgc acacggtgag caaaacttca cgcgtgcaat ttgctcactg cctcgcgagg 60 ccaaaaactc accgtgtgcg gacgtcgatc gaacgaaatc acgtctcgcg agcaactgag 120 gcaaaattct cacctgcttg aactgtgagt ttttggcctc gcgaggcagt gagcaaattg 180 cacgcgtgaa gttttgctca ccgtgtgcgc cgggct 216 // ID SAT-1_NV repbase; DNA; NEM; 2003 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone SAT-1_NV satellite DNA - consensus. XX KW SAT; Satellite; Simple Repeat; SAT-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2003 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2003 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2003 RA Kapitonov V. and Jurka J.; RT "A family of satellite DNA present in th starlet sea anemone RT genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Nearly 2% of the genome constitute clusters composed of the CC SAT-1_NV unit. XX SQ Sequence 2003 BP; 678 A; 342 C; 366 G; 617 T; 0 other; acacaatgaa cttcagtgaa attctaatac tgacttatga gcttttggta catgtgggag 60 actttaaaca aaacaaaaaa aatgaccaca aactgtcaat taacatagtt ttcaatataa 120 tattgcatat tatttaataa ggtattgaca gcttttaaaa agttcaactg tttgtagaca 180 cttaaaagcc tacaataaac actgactcca gacatgcgca gtactatgct gctgcccctt 240 taaagtaaaa tacagcttta cttagtcagc gtagacaata ttgcggattt tgtcaatatt 300 ctaatatgaa tatgtcaata ttctcccccc ttacgtcttt atttctattt attttatgct 360 tttcacatga taccaaaaca gcgtcttttt tcttcgctaa tttgatgtca tgtacacaat 420 aaaagagatg cgcccgtgcg catggcgagt ccccaaggga cccaagacgc ccaaatagac 480 ctctattttt tgtcatccac aatctcggcg agctgtgcgt ggcgtaaccg tattacaggc 540 ctgggatcct ggttattgtc ctccccatta atgcgcgggt tgggataacc ttgcaagagt 600 gttgtacagc atattcgctc ggaaatatcg gtgcttgggg ccttcgggtt ctttacagcc 660 ttccgtaaaa gccttgtgct gccataccga ttgggtaatc cgtatgtatg gtttccgttt 720 tgttcttcag accgggttcg atcccaggcc aatgggcttt ttttttaatt cgtttttttt 780 tctttgtgct ggaccccctt aatcctgata ggttttgcgc aaaaataata aaaaaaagtg 840 agtttgcaaa ataagcttgc tggatttatt gattatatgt attcaatttg ttcctaggaa 900 gttaacaaaa aacacaaagc aaagagtttg aggaagtaaa caagtatgtg aactttaatg 960 ttctatttga aggggcgcat tttgtacagg gaagcataca tagaatgctt aactggtgga 1020 gaggggagag gtaacagttt attgagcata atgtcaacaa tagcaggggg aagggagggg 1080 cactctcttc atacaatatt gcagttgtta cctattatta aataagtttg taacatgtct 1140 ttgtttatta agcaaggtct atttctgaga caagcaaact caagtaagag ctgttgaaat 1200 aacaggtgag tgttaaaaaa aaaacaatta tctgattaga aaactaatgt agattccttt 1260 gcaccaaata agaacaaact tcattttgtt tgttatttat gaggaacgag atgagctcta 1320 caaggccaag aagaaatatg tattgctcat ctaaattata caagtaaata ataatattaa 1380 aaaagaatta ctgtaagtaa ttagagtggt tttcattaac ccgtgaaaca aagtgtgata 1440 gttaaacggt aatagttagt aaaacacaaa aaagaacaat agaatcagat cacaacaaag 1500 tgtaatacgc taaagcgtag ttcacgggtt aatgaaggtt ttgacatttc aaccttacat 1560 ccacatgaaa gtaatgccta atatcgagtg ccctacagta agtgttttgc agtcaagttg 1620 ttttctgtta gtaggtaaaa aattattcta aataatagta atcatagcta tggtcaccac 1680 ttacacatat agaacttgta atgaaaagaa agaaaaaata tatatatatg cagtcaaaca 1740 acagaattgc atgataacct tgaatatatt gaataaagga ctgcaaaaaa acatcttttg 1800 tactagttgc ttgaattgac ccttggctat ttttagctga attcccctcc ccctctaaaa 1860 aagaaaataa taataataat agaacaaaac taaaaagaaa acaaacacaa cagagacccc 1920 caccaacaat tttgattttt ttttactttc ctttaaaggg ggagtgtcat gtttaagaga 1980 tttgcaatag ctctagagcc ctg 2003 // ID CR1-3_NV repbase; DNA; NEM; 3631 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-3_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3631 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3631 RA Kapitonov V.V. and Jurka J.; RT "CR1-3_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 397-397 (2007). XX DR [2] (Consensus) XX SQ Sequence 3631 BP; 986 A; 933 C; 760 G; 952 T; 0 other; tccgttcatc gtggatatgg cgctccaaat tgctctcagt atgatggtaa catgtctgtt 60 catggctagg ctggcaaatg gatccgaaat gtggactaaa caactggatt tagagagatt 120 ttcattcaag ttcaagcccg tcagtttcgt aatcactgaa ccgaattgca gcttcacatt 180 tgcatgtatt acagagcagt cgtcacgcca tcgcctcgca tcactgcccc ggtcttatca 240 caagtctgtg tcacgcgtca cgttattttt actaataatg gcgtctgatt gctccttgct 300 gaatccgggc cctgttaaat acccttgtag tgcttgtacg aagcctacaa aatctaacca 360 gcgagcgatt tgctgcgacg agtgtggtca gtggactcat gccaagtgta tttctatgtc 420 gtacaattca tatcttcgat atagcaacaa tccaaattta acatggattt gcagctcatg 480 tctgtctcca aacttctcta cgcgccacgc tcttgaagat cttagcatag ctggtcggaa 540 tagtttcgca gcacttggaa gtctggattc aaacgagcgc tcacctgaca gcagcctgga 600 aatgtcatct tctgagacct ttgaatttcc tcctggtcgt gtaagatcta gtacacccct 660 acggaatgct ccgcccaacc agcggagggc aaaactgcgg tgcatggaga tcaactgtaa 720 cagcatccag agttctgatc gggctgcggt ttttgctagt atttttgcta ctcatgaccc 780 cgatatcatc cttggttgtg aatcaaaact cagtcctgac gatccaacat actcctcgtt 840 cccgacagaa tatactgtct tcaggaaaga gaggcgcgat atagggggag gtggagtatt 900 tattgcggtc aaatctggta tttcagcctt tgaacgccaa gaccttacaa ccaattcaga 960 ggacgaatcg ctgtgggtgt caatacagct tgctaaaacc aaaacattgc acatctgctc 1020 cttttatagg ccgcccgact ctccttccat tcgccttgat tacctgtctg agtctctttt 1080 caagctattt cattcaaaca agaaatcaca tcccaacata gtagtcagcg gtgattttaa 1140 ttgtggtgac ataaactgga aatgcgatct tcctgaagtt acttcccacg ccaccgcgtc 1200 actaatgcac aagctattgg acatgatcag agaccacgcc cttacgcagt atgttactgt 1260 tcccactaga ccagcgtccc tcaagaccct ggaccttgtt ctatcctctg tcccctccct 1320 ggtctcacac gtccaggtta aggcgggcat gagtgaccat gacattgttc tctttgacat 1380 caacgtcaag cctagaaagt ccacccgccc tccccataaa gtgtatttgt accataaagc 1440 tgatatggaa gctctccgcg aggacatctt gagtcggact acagagtttc ttgaccagtg 1500 cacccacaat aacctcgagg aaaactggtc ctccttcaag aatatcctta tcgacgcaat 1560 tgacaggcac gtcccctgga agatgacccg tgcaaaacct tctcttccgt ggatctcacg 1620 ctcgattaag cgtcaaatgc gtaagagaga ccgtcttttc aaaaaggcaa agcgcagctg 1680 tgacaaactt tctgctgctt gggtgcatta tcgtcatcaa agaaataagg tggtaaacct 1740 agttaaagca tcccatagaa tctatctgga ttcagttatt ggcgggagtc tacacgaaaa 1800 tccaaagagg ttttggagct acgtgaaaca ggcaaggtgt gaaaacatag gcataccaac 1860 gctgcgctcc ggagattcct tgtacatctc tgatagtgac aaggccgaag tactgaacac 1920 tttcttccag agtgttttta cccaagataa tggtatcctt cctaacagta ccccctctgt 1980 tagcaacatc aaagacatca gtgatatgga atttttccag cctggtgtgg agaaactact 2040 agcacaactt gattcatcta agtcacctgg acctgatggc atctcaccac gctgtctaaa 2100 agagttatcg aaggaggtct ctgggatgtt aacagtcatt ttccagcaga gctacaacat 2160 cggtgctcta cccaatgact ggttaacagc gatggtagta cccgtctaca agaagtcaaa 2220 caaggccgac cccgcgaact atcgcccaat ctctttgact tgtctttgtt gcaagacaat 2280 ggaacacatt gtcctgagcc acctaaacaa acatctttct agattcaata tcttgtccaa 2340 tgcacagcat ggttttcgac aaggtttgtc atgtgagaca caattagtct taactttcca 2400 tgattgggct accgtattaa acaaacacgg tcaagtcgat gccttactgc ttgactttag 2460 taaggctttt gacaaagttt cctatccaaa acttatccac aaactgagcc gctatggtat 2520 aaaggggaat actctgactt ggatatcagc ttttctacac aaccgttcac aatttgtaac 2580 tgtgaatggc tcacactctg ccacgtgccg cgtcacctcc ggggtcccgc agggctccgt 2640 attaggccct accctcttcc tactgttcat taatgacatt gctgagtcat caaactccag 2700 gcttcgcctt tttgccgacg acacagtggt gtatcgtgaa ataaacacgg aacaagacca 2760 tcatgcacta caggctgact tgaacaactt gataaattgg gcatcagatt ggcagatgag 2820 ctacaatgta acaaaatgtc atctcctccg tgttacaaac aagcgcaagc catctgaatg 2880 tacgtactac gcagagtccg ctgccttatc acaggtaccc cagtgcgact atctcgggat 2940 taaatgcaat gaatcgctcc gctgggggga tcattgcact aagatcacct ctaaagccag 3000 caagacactt gggctactta gacgcaccct gagaccgtgc tcgaaagagg taaaggagag 3060 agcatacctt gcactggtga gaccatcgct tgaatatgcg tcttctgcct ggagccctta 3120 taccgactca gacgtgaacc gtcttgagca agtgcaaaaa aacgctgctc ggtttgtctg 3180 cagtgattac cggataacca caagcacctc ccagttagtt aaaactctag gctgggacac 3240 actagaagac aggaggctaa gaaaccagtc cacactactt tacaagttcc ataacaatct 3300 catccactgc caacctccag atgatttgag acgcaacgag aacattcgta gctccagaag 3360 acactcccgg acgtaccatc agttacaggc caatatattg gcctttaact actcgttctt 3420 tccaagaacc attcgcacct ggaaccttct acctgcagag gtagtgaacg ctgctgacct 3480 gccttcattt aagtcggcat tggcacctgc gataagtgag cttaaggtgc ccagtcacct 3540 tcgcagactg taacatcagt gctgactgtc cctcccgaaa ttagtgaaac ctattaggga 3600 gtaaatagtt ctaagttcta agttctaaag t 3631 // ID DNA-10-1_NV repbase; DNA; NEM; 1152 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-10-1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 10-bp TSD; KW NVREP287; DNA-10-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1152 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1152 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1152 RA Kapitonov V. and Jurka J.; RT "A family of DNA-10-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC This family was reported originally as the unclassified NVREP287 CC DNA transposon [1,2]. XX SQ Sequence 1152 BP; 345 A; 233 C; 213 G; 361 T; 0 other; ggatgttact aaaacgggga acggggagcg gggaacaggg atctgggaac gagtgatcag 60 cggtagggca cagcgatgta gcaacctcac gtgcgtctct ttggctcttc tctcgttaaa 120 atggatggta agtgaaatct ctgactctgt ttctaagaat tatgaataat tcatgcgccc 180 attgaatcga atctaatacg tttctcttat tttagatgtg atagagatca agtcaagtga 240 aaggtatgtt gaaagggata atatgataac agtttgcttg ggtagtttag tgcgagctaa 300 aatcgcaatg gtaaacttga aaagagattt atggaaacat attttgaatc cgtggatatt 360 tttgcaatcc tacattgcca tgacttcaaa ttctcatccc atagtgatga aaagcactct 420 ttacaaattt gaggtgctat tttcagtatt tttatgatta ttgatgttga aagctgctgt 480 tttccgtgac catgaccctt ctttcctcta acaccaagtt gactgtttac taaattagac 540 tattgcaaaa tgttattact tttctggccc catcttattt gttcctctgt acactttatt 600 acagctcaag ctcagactca agctcagact tggactcaag ctcagacatt gttgaacttg 660 taaaaggaaa acagcagctt tcaacatcaa taatcataaa aatactgaaa atagcacctc 720 aaatttgtaa cagtgctttt catcactatg ggatgagaat ttgaagtcat ggcaatgtag 780 gattgcaaaa atatccacgg attcaaaata tgtttccata aatctctttt caagtttacc 840 attgcgattt tagctcgcac taaactaccc aagcaaactg ttatcatatt atccctttca 900 acataccttt cacttgactt gatctctatc acatctaaaa taagagaaac gtattagatt 960 cgattcaatg ggcgcatgaa ttattcataa ttcttagaaa cagagtcaga gatttcactt 1020 accatccatt ttaacgagag aagagccaaa gagacgcacg tgaggttgct acatcgctgt 1080 gccctaccgc tgatcactcg ttcccagatc cctgttcccc gctccctgtc gttccccgtt 1140 ttagtaacat cc 1152 // ID BEL-5-LTR_NV repbase; DNA; NEM; 188 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone BEL-5_NV autonomous LTR DE Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-5-I_NV; KW BEL-5-LTR_NV; BEL-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-188 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-188 RA Kapitonov V.V. and Jurka J.; RT "BEL-5_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 373-373 (2007). XX DR [2] (Consensus) XX SQ Sequence 188 BP; 40 A; 37 C; 57 G; 54 T; 0 other; tggtcggtcc ggcgaccact atttagaatt gtaaggcgcg cgggttgcct gtgggcccta 60 cccacaatgc ccggaggcgc gaagttagtt gagagttctt cgagagaagc catgttttgt 120 tgacgctttg ttcggtgtct ggtattgttg aaaataaaga tcgtattttt acccgtgtag 180 agggaaca 188 // ID DNA-TA-14_NV repbase; DNA; NEM; 1455 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-14_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1455 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1455 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1455 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-14_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1455 BP; 446 A; 249 C; 258 G; 502 T; 0 other; cagtacgata accagttccg tagcagtcct agttccgtat cactcagcat ttgtttttat 60 ctttttgcct cgaatattgt agatttgaac aatccaaaac tacctaaatg atacaaaact 120 attaaccttt cctgagatat aaatccagct tatttcatcc aatggtttgt tcagaaagta 180 tcattatttc gaagcgattt tcataattgt tgctaaaatg agcggcgttt actgcacagt 240 gaactgaccc gcgtcacgaa agtcagatga aaacaatacc tcctttaaca aaaatgtcct 300 aatttttata cgaatgctta gaagaaagaa tgtctgttaa tgtgtatggt tttttttctg 360 acttgatgcg attttttcga tttacattgc ttttagtttt tcgtgcttcc cggaggtcgt 420 gggaatagtt ccgtatcacc ctgcgcccat agtgtgtttt tggtttgact gcagatataa 480 agccgcgaaa aggattgatt tgattatccc gttctcaatt aatcatttta ttcccagtaa 540 tgttaattct aaacggttaa tttttattat gtgggccttt tatttcagtc attcggctga 600 ataaagaact tcattttaaa gacaacctcc ttgatattgt tagcgctcga taaaatatta 660 ttctatatta aaataattac tgaaactgtg attgatatat caatatgcta ggatgattaa 720 ataaaacggc caagattaac catagttaaa tcattagctg gctaacttac aaagggatat 780 gggattgtta ttgcagaact cttaaaagaa cgacaacaac gcattggcgg ccgtagcatt 840 cacattttgt tcttgtaaat aaaaacggct ttttgttgag ctctcgtgca cgaaaattat 900 caaaataaat cacccaattc taggctcacc ttatcctcta catttttgca ttttgtctat 960 tttgccgttt cagtatttgt gtgggttgtg gcatttattt tggaagaatt ctatcagacc 1020 gttttgtttc ttgcaatatg gatttgttag cgacacgcga gcgaaagccc attgacgatt 1080 gttggtttgt taacctgctg cattgcgaag ttaaaatcat ttttatacat taattttaag 1140 caaaaaggaa gggatgtgat atgttattca gtaaatatgt ttttattgat tctcaaatga 1200 aaaaaactcg taccagacga cagaattttt gagtgatacg gaactatgcc cgctgctacg 1260 gaactactcc cactatgtgc aaacagaaaa taccatataa atcaataaaa tttgaaaatg 1320 tgtagtcttt tctgtgcata ttatatgcat aagtaaattt gtagtcgtct tagaaaaaat 1380 catgagcatt gggccctccg caaaaaagat agagcaattt taatatgaag tgatacggaa 1440 ctggtcatcg tactg 1455 // ID DNA-9-27_NV repbase; DNA; NEM; 80 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE NVREP465 non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP465; DNA-9-27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-80 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-80 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-80 RA Kapitonov V. and Jurka J.; RT "A family of NVREP465 non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC The genome harbors a few hundred copies that are 77-98% identical CC to the consensus. It was reported originally as the unclassified CC NVREP465 DNA transposon [1,2]. XX SQ Sequence 80 BP; 18 A; 24 C; 23 G; 15 T; 0 other; taggctcgat ttccagccgt cgctaggcct catcgggcac gtactgcggg ctcacagaaa 60 cgagctggaa atcgagccta 80 // ID DIRS-13_NV repbase; DNA; NEM; 2633 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-13_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2633 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2633 RA Kapitonov V.V. and Jurka J.; RT "DIRS-13_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 407-407 (2007). XX DR [2] (Consensus) XX SQ Sequence 2633 BP; 592 A; 401 C; 372 G; 415 T; 853 other; tccatgagga gccaaagcga agaacgagct aaaaaaacac agcagtgatg aaactgcaag 60 catgaaaaag cccgccaaaa gcggtgcata acagcttcgc gctccatgag cgatgatgaa 120 gcagattctt cacaagagga agactgtgaa gagatgatca acagcattct tcacggagac 180 cagcataagg aaagtcaaaa tcctccgagg ctgaggacga aatcctggct ggcttaatag 240 atgaatatga gactgaggac aaagcgggca aagacgtgcg ttcaggccag ttggccaagc 300 tcgttgacga caaacttcta caaaacaaaa tgaaacacca gaccaagcct agtaataact 360 gcaaaattca atagccacca acgtaacccg ccaatctggc gaaggctaag gagttaacca 420 gaaaaaggga catgaatttg tttaaggccc ttgtaaaaag gcatgctgtc gttaatacgg 480 ctaacagatc tggctatgac atccaaagtc attggagaag accagaaaac cgcccagcag 540 ttgggactcg atgccttgtc tctccttgct tatgcaaact atgaactgaa tatagaaagg 600 gagcagctca tgaaaaatga cattggccgc gacaacgcgc cactatgctt cagtcaaacc 660 ccattcacag atttgctgtt ggtgatgaca gctcaaaaga tatgaaaata tgggatgaaa 720 acaaaattgg agctagtatc caaggcaagc ctgctcagca tcacaatgct aacagagaat 780 tctcttctaa ccggaatcca aaaaacttca agagccaagc ctccaaaccc tggagtcgca 840 aagagaagag gaacatgagc acaacgcaaa acagtctcaa caagaaacaa acccagtaac 900 tggggaggct cctctggtaa ataagtgctg ttgatacctt caaagctggc accatttata 960 gcccaatata tgtcctgtnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1380 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1440 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1560 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1620 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1680 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1740 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1800 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggtaaccatt tagttgacta tattgatgac 1860 attttgctta gcagaagacc ctgtaacatt gtctgtgcag atatctgaca ctttatcatt 1920 acttcgatcc ttggggttca caaattcatg attctaaatc aatgactact tctagtcaaa 1980 aggcccttgg gtttacttcg gaccctaagg caatgactgt gtttatggtc caagaaaggg 2040 caaaacnacc tcgcattatg actgggatgt ttaacagaaa actaggaaaa acttgggacc 2100 cacaaacagt gctagcatac ctaaataact ttcctccatt ggaagaatta tttttgaagc 2160 agctaactct taagttagtt atgctcattg cccttgtatc tgcaatacag acgttgcaaa 2220 acctgtccct agaagatatg cagatttcca cagattctcc atatcacatc tgtactcaaa 2280 caatagtgca aggagtggct gcaaacacct caacccttat tacttaatcg ttatacgtta 2340 gataaacgtt tatgtgttgt cgagctactt agctcatact taccagaacg gctgagctta 2400 ggaaggacct gtatgtacca cctgatggcc ctgcctcacg agatactatt tccagatgga 2460 tcatcaaatt ggtgaaggct gcaggtataa acatagatgc cttttaacct cacagcacaa 2520 aaggaagtcc acatcaactg ccaaaggcag ctgatacccc agttcaggaa attctggaga 2580 ctgcaggctg gagttaccag tcagtgtttg ctaaatttta tatcaagcca atc 2633 // ID Penelope-8_NV repbase; DNA; NEM; 1179 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-8_NV autonomous Non-LTR DE Retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-8_NV. XX NM Penelope-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1179 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1179 RA Kapitonov V.V. and Jurka J.; RT "Penelope-8_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 638-638 (2007). XX DR [2] (Consensus) XX CC It is only a 3' terminal part of the retrotransposon. XX SQ Sequence 1179 BP; 370 A; 214 C; 224 G; 371 T; 0 other; atagtcatct ttatttacct cccacgagct gtcaccctga acattgtaag cgcgccattc 60 catatagcgt tgctttgcgc cttaagcgca actgctctga cgagaacttt ctatgccgta 120 gaaataatga atataagaat tatttgatag aacagggtta taaacctgaa ttagtttcta 180 gcaagtttaa tgaagttgct tctctttcta gaagtgagct acttaagcct aaatcgaata 240 gagccaaacg caaggttaca cctctggtta tggatttcaa tcctaacctt ccggatatcg 300 ggcagatcgt tcggaaaaat cttagttttt tgcattcctc tacttttatg aaagaggtct 360 ttccggaagg tagtataatt tcggcattta gaaggcctaa aaatctcaaa gacatccttg 420 cgccttctaa attcaagcag cgtgtggcca ctgaaatcag taaccaagag aataatagtg 480 gttgttttaa atgcggaaag aaatgtgatc tctgtagcag ttattttgtt caatcacgac 540 atttcattag cgctgcaacc ggcaagaaat actttataag gcaacgtgtt tcttgtaatt 600 ctaagaatgc aatttaccta gcaacctgtc ggaaatgtaa tttacaatac gtgggttcct 660 gcactacgga attcaaggtg cgctttcgca atcataagtc cagtatgaga accaacaaga 720 aaacatgtga agtcgccaag catttcaacc gcagcgagca taatttgagt gattttgact 780 tcattgtaat tgaaacaata gctaggcagg atctgattgg tctagacagt gttcttctca 840 atagagaagc gtactggatg atgcaattat ttactttggc tccccatggt ctaaataaac 900 gcagggagta taagtcgaag aatcgaattc atttcaataa cacatagctt tatcaacaat 960 ttgtaatcgc cgttaaaatg atgtaattta agtacactat atttaaagaa ttcacaagtt 1020 gtaagtatat aaggatgtag tttttggccc attgtatttt ttagcttttt aacttatttt 1080 atactgaaga aggccgaaag gccgaaacgt ttagtaaatt tttaataatg tctaaaagtt 1140 gggaatcgta gcgtctttct tcacactact atatatata 1179 // ID Gypsy-34-I_NV repbase; DNA; NEM; 4379 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 22-AUG-2007 (Rel. 12.07, Last updated, Version 2) XX DE Internal portion of the Starlet sea anemone Gypsy-34_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34-I_NV; KW Gypsy-34-LTR_NV; Gypsy-34_NV. XX NM Gypsy-34-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4379 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4379 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-34_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 499-499 (2007). XX DR [2] (Consensus) XX SQ Sequence 4379 BP; 1407 A; 1078 C; 973 G; 920 T; 1 other; tggtgtaaga agcgggattt tgcacaccaa aaaggcctcc cagcaagcca agagggcaag 60 aatactgaga taagtgttca attcatatgc aacgggcatt tatttgcatc tgtatagtga 120 ttttggcaat catttcggca catttgccga ctacatatag ccgccatctt ggattttaca 180 gatcgcattg gatcttctca acatggcaaa gtcgcttcca acgccccaac ccctcgaaat 240 gcagggagat atggccacca actgggaaat attcaaagac agctgggaaa actatattat 300 cgcgacggaa ttaaacaaga aatcggatgc aatcgtggta gcgactctct tgacagtcat 360 gggcaaagat tgctacagaa tttacaagaa tttgcccctc accgatgatg aacgaaagtc 420 ccccacatct attctggaga aattaggtga ggaattccag tccaagagga acattatata 480 tgagaggtac ttgtactttt gcaccgtcca agagcccagt gaaagctttg accgtttctt 540 gaacagactc agagatcgca ttgccacatg caagtacact actcttgaga atgaaatgtt 600 aagggaccgg attgtatttg gggttaacaa cagtgacacc cgagaacgcc ttctaagaga 660 aaaagaacta gacctggaca aagcaataaa catttgtcgc acaagtgaaa tggcagttag 720 acagcttcac aaaatggagc caactgagac cgtccactat acgaagcaaa acaagtccaa 780 atcaaagccg aggcagatca cagaatgcaa gtactgtggt gacagccatg ccgctggaaa 840 atgcaaagca tttgggcagg tctgcagtaa atgcagcaag aagaatcact tcgctagagt 900 ttgcatgtcc actcgtcaag atcataaggc gagccagcct caacagaagc cagacaagca 960 ggctagaaga ggtaaacaag acgtacacca actagaagag agctcatgca gtgacgatga 1020 tgatgaattc tccagcaatg acagcctgta taccattcag tcaaaccaga agaaaaggca 1080 gtattttgca caagtgttag ctgtgacagg agatgagacg gccaggcagt caatcaaatt 1140 tcagcttgat accggagcaa catgcagcac actatccctt aacgactaca ataagctgac 1200 caagaagcaa cccgagcagt cccaaactga gctgcgagcc tacaatcagt caaccatcaa 1260 acccatgggg caagtcaagc ttcactgcac agcaaatggg atcacaagaa aggttcactt 1320 ccagataatc aaagaggcac caacgtcatt actctcaggc agagtctgcg aagcacttaa 1380 gcttcttgaa ttcaatgaag aatgtgtcca ccaaatcgag ccaggtccaa aagaacccct 1440 gacaaaacag catgtcttac atgactacaa ggatgtcttc agtggacttg gaaggctgcc 1500 gggtacatac cacatagaaa cagatccaac tgtgaaaccc aagcagaaca atcccaggcg 1560 tgtccctatc ccagtacagg atgagttgaa gaagaagatt gaggatcttg aggaaatggg 1620 agtaatcgct aaagtaacta ccccaacgcc atggataagc agcatggtgg tagtccgaca 1680 accaaacaag ctacgagtat gcctagaccc atcggagttg aacaaggcca taatcagaaa 1740 ccattatcca actccaacta ttgacgaagt gtcacccaaa ctgaccaatg ccaaggtatt 1800 ctcagtagtc gatgcaaaag atggatttct gcaagttgtc ttggacgagc catcaagcta 1860 cctcacaaca ttctggacac cttatggccg ttacaggtgg ttgcgaatgc cattcgggat 1920 caagtccgcc ccagaagagt tccagcgcag aatcaatgaa tgtattgaag gccttccaaa 1980 catcgcagca gtccatgatg acatcatcat ctatggaacg ggtgaaacag aagaagaagc 2040 aatggcatgt catgatgcag ctctcaaaga cctactggat agatgcagag aacacaacct 2100 gaagctcaac ccaaagaagc tcaaattcaa gttggacagg gtgacctact taggacatgt 2160 cctcagcgca gacggaatct ctgctgatcc agaaaaagtg aaagccatct gtgagatgcc 2220 gcagcctgtt gatattgcag gcgtccagcg cctcattggt gttgtcactt acttgtccaa 2280 attccttcct cagctaagca cggttgcaga acctctccga cgtctgactg acaaggacgc 2340 agtgtttgac tggctgccac agcatcagga agcctttgag aagatcaaga tgatgatcac 2400 caaagcaccg gtattacact attatgatgt caacaaagag gtaaccattg aaagtgacag 2460 ctccaacgta ggcttggggg cagtcattac acaagaggga caccccattg cctatgcctc 2520 tagagctctc actcagactg agcgcaacta tgctcaaata gagaaagagt gcttagcaat 2580 catgtatgca actgaacgtt ttgaacacta cattctaggc aaagagaatg tcagagtcct 2640 tacagatcac aagcccctcg tcacgatctt caagaagccc atccttacct gccccaagcg 2700 tctgcagcga atgcgactgc gtctacagaa attctcgctt gctgtagagt acaagcctgg 2760 gcccacgatg tatctcagtg ataccctatc ccgcgcatca ctaccgctcg accatgcacg 2820 tccagacaca ccagcctatc agatattcca gataagtgaa gaagagaaga tacgagaaga 2880 aatagaagat atcgacatgc aggagtccct gtttgtgact gacgaacgac ttgacaacat 2940 cagacgagag acagccaaag acccctcact ccaaaccttg atgacagtca ccaagcaagg 3000 ttggccagac aacaaagctg aagttcccac ttgtattcgt gaatactggc catacagaga 3060 tgaactatca actcagaacg gacttgcctt caggggaacc aggatcgtca ttcctacaac 3120 aatgagaacc gagatgacaa cacgagcaca tgcgtcacac ctaggtatcc agtacactac 3180 aaatacagct agagacatca tgtattggcc aggcatgtca gctgacctta cagaagcagt 3240 acagcgatgc tccacctgtc aagaaatgca accagcacag cagaaagagc caatgatgac 3300 acatcccata cctcagctac catggcaagc agttgccagt gattgcctgg aagtgcaagg 3360 cgaacactac ttggtcctag tagatctgta ctctgactac atagaactag ttcagcttcc 3420 agacatgtca tctaaaactc tcatccagca gatgaaaccg atatttgcaa cccacgggac 3480 accagcagtt cttatatcag acaatggaac caactacagt tcacaggaat tccaagagtt 3540 caccaaggca tgggaaatat atcacgtaac tgtaagtcct catcaccaca agtctaacgg 3600 gaaggtggag tcggcagtga agattatgaa gagaatcatc atcaaggcca agaaagacgg 3660 ctcagacctg tggaagtcac tattggaatg gagaaactca ccaactccag gaacatccag 3720 ctcaccagca caacgactta tgtcccgccg aaccaggtct atgttgcctt gcagccaggc 3780 cctgtacaag cccgaagtac aggcagcggt gacagaacag atcatccaaa agcgcaagca 3840 ggccaaacac tatcatgatc gcacagcgaa gtcactgcct agtcttgttg ttggtcaacc 3900 artaagggtg aaggtacatc cacaacaggc tcatagcaat tggaaggcag ggacagtggt 3960 ttccatggca acaacgccac gcagttacgt tgtacaagtc aatggcagga cgtatcgcag 4020 aaatcgggta catttgcgag acgctcaacc tgacctatca gctgcacaag accattctgc 4080 tccagagcca agccatgatg caacaaagtc ttcaggaatg tctacctgca gtccagcacc 4140 agaaccaagt ggtccaggtc cattagtcgc cacgacaact gtacttacag aaccagtagt 4200 cacacgatca ggacgagttg tgaagcctcc acaaaggctg atcaatgctc agtcatagtt 4260 tactacgtag tgacttttaa atgccagtca taaactttgt tatttgaaac tgacttatag 4320 ttatagttgc tgtttagtct acaattgtgt ttaatgtttg ttgtccctag aaagggaga 4379 // ID Gypsy-26-I_NV repbase; DNA; NEM; 4362 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-26_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26-I_NV; KW Gypsy-26-LTR_NV; Gypsy-26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4362 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4362 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-26_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 483-483 (2007). XX DR [2] (Consensus) XX SQ Sequence 4362 BP; 1391 A; 1012 C; 1087 G; 872 T; 0 other; tggtgtcaga agatggcaag cagcacgcca ttcgtgaagc cacccgaagt attggaaatt 60 tcgagcggaa atccagcgtt tgcttggaaa aagtggaagc aaaaattcga aatttatttg 120 aaggccactg ccacctccac gaagcctgac gaagtcaagg tgggtttact gctcaatcat 180 attggagaca aatgcctaga aatatatagt aactttgtat ttcgccctga tcaaccaaac 240 ccagatggtg gagaccctat accgggcgaa aacccggata attacaagac ggtgatagag 300 aagtttgacc aatattttac taaacgagac ccacagttaa tgctccgcga gaagttctgg 360 ctccagctcc aacgagaacc aaatcagagt tttgactcct gggtagtcac tgtaagagaa 420 agggctgcag aatgtaaatt cccacccgaa ttcctcgagc aagctataag ggataagctt 480 accttttcct gtgtagatga taggtctaaa ttgaagttgt acgatgaagg ggcagggctt 540 tcactcgata aaacaataac aatcctctcg atgaaagaag catctagtcg ggaactacaa 600 gaatcaaaga cggcaacaat cgagagagta ggattgagag cacctggaaa aacagcaccc 660 cagtatgcac agcggtccga gacaaaaagt caacggagac agccacctga tagatgcgga 720 tactgtggca gagaccatcc tcgaggcaaa atcaactgtc cagcagctaa cgtgcgttgt 780 gataaatgca ccaaagttgg gcacttcgct gctgtatgta gaagcaaacc gaatacaaga 840 gtaagtcaag tagaagatgc acatgagggt gaggttttag agcataaccc gacattcgtg 900 ggacgggttt tggcagtccc tcaaacagat aatacattac cggatcaaga taaaaacgtc 960 gacatcacgt cttccgaaaa tcaagtcagt gaggccgaag cattaatgcc tgagatatct 1020 accgattata ttcgcgatcc tggatggcat gtgaagctga gagtagagaa acgcgagcta 1080 acgtggtgta ttgataccgg agcccaggtc tctgtgatgc cggaaaccgt gtacagagag 1140 gtgtatggga aactctcgcc gtcagacaga aagctgatag gcgcagggga tacaccacta 1200 gaaactgttg gacaaacaat catgaaccta cagctcgggg aagcatgcat cgaagaatgt 1260 gtctacgtag tgagaggtgc aacaaaactg cttctaggga tcccagctat ccgcaagcta 1320 gggttaatac acgaaatccc caatacctac agtgtcaggg ctatcgattg cagcgccaac 1380 cagcaaaatg aagaaccgtt caccaacaag gaaaccatag ttcgcaagaa cccacacctc 1440 ttcaatggtc taggtaaact aagcggagag tacacgatcc gtcttaagga aggagcaaag 1500 ccattttgtt tgacaacccc tcgacgagta ccgctcccac tgcaaaagaa agtggagcaa 1560 gagataaacc ggatggtgga gctcggcgtg atagaaccag tagacgagcc cacggactgg 1620 tgcgcaccga tagtagtggt accaaagcca aatggaaccg tgcgaatatg cgtcgacctc 1680 acaaagctca acaaagaagt cagaagagaa gtataccaaa tgcctaaagt ggaagagact 1740 ctcggaaaca tagccaaagg atcgatctac tccaaacttg acgctaactc aggcttccac 1800 caagttccct taagcgagga aagcgctaag cttactacct ttatcactcc ttttgggcgg 1860 tatatgtttc gccgtctgcc atacggaatc tcctctgcac cggaatactt tcagaagaaa 1920 atggaccagg agctggctgg actagaaggc acactatgtc atatggacga catcctggtc 1980 gttggaaaag accaagcgga gcacgataag agactggctg ccgtccttca ccgcatcacg 2040 gaaatcggca tgacactgaa cccagacaag tgtaagttct cagagaagaa gattgagtac 2100 cttggacagg tgatcgataa cgaggggatc aagaaaaatc ccgccaaggt gaaagctatc 2160 gtcgacatgg atgtacctag ggacatccct agcctgagac gatttctcgg gatggtgaac 2220 caactaatga agttctgtcc caatctagca gagaagacgc aaccacttcg cgacctgctt 2280 aagaagaata gcgcatgggt ttggggcaag gcgcaagatg atgccttcaa tgacttgaaa 2340 gaagaaatgg cttcagagag agtgcttgca ctgtatagcc ccgagaaaga gactgtagtc 2400 tccgcggatg caagcagctt tggattgggg gcagtactca tgcagaagca gccatccgga 2460 gaaatgcgtc ctgttgcata tgcaagcaga tctatgacaa acaccgagtg cagatacgca 2520 cagatagaaa aagaggcatt agcaaccacg tgggccctag agcactggtc cgatttattg 2580 gtaggcatga agttcactgt cgaaacagac cacaagcccc ttgtacccct gtttacttcc 2640 aagatgatcg atgagctgcc ggtacgcata cagcgtttca gaatgaggct gatgaggtac 2700 gattttgata ctcggcacgt tccaggcaag gaactttata ccgcagatgc actatctagg 2760 tgcccactaa acgaaaagag gtctgagacg tcgtgccagt ctgaccacct gtacgctgaa 2820 gcagactgtt atgtgaatac catactgcta cacctgccag catccgacaa gagactagag 2880 gaaatacggt cagagctgaa gagagacgac gcattgaaag tcgtgatgca ttacgtacag 2940 aatgggtggc cagaaaccaa acagaagctc tatgggcccg tgaagaaata ctggggtgaa 3000 agaggaagct tatccaccca cgaaggccta ttgatgaggg gacgaagact tgtaattccg 3060 tcgagtctca ggccagatat cttacggtac ctacatgatg gtcaccaagg catatccaag 3120 acacgggaca atgcagcatc gtccgtttgg tggcccggaa tctccaaaca aattgaagag 3180 atggttcgca attgtgccac ctgcgaaaaa tatcggaagg aacgtataga accgatgaag 3240 ggaacagatt tcccagagcg accgtggtcc aaactcggag cagacttctt ccaacatgaa 3300 ggccgacact acctgcacat aatcgactac tattcgcgcg atatcgaaat atacttggtg 3360 agcaagaatg taacagcctg tgatacagta aacaagatga agaatgcctt tagtcgacat 3420 ggaatcccag atatcttagt taccgacaac ggaccacagt tcgcctctgc agagttcaac 3480 aagtttgcgg ctacatgggg attcgatcac ataacttcat cacctcggta cgcccagtca 3540 aatggcgaat cggaacgagc cgtcgagaca ataaagaact ttctgaagaa gtgcgatgac 3600 gagtacctcg ctcttctaag ctacagaaac acaccgcttc acaacggata ttctccctca 3660 cagctaagta tgggtcgcaa actaaaaacg agagtaccgt gccaccctga cgagttgaaa 3720 cctcaactcc cagacaatga tgtagtgaga aagagagaaa gagagtacag aagacaaatg 3780 cgggaagact atgaccgcag acacagagtt gcagaggggg aggagttagc agaaggtgat 3840 cgagtatgga taccagacct aaagacggag gggacgataa tcaggccaca cgaaacccca 3900 cgatcggttg taatacaaac accaaaggga ttgcggagac gaaaccgtcg acaggtaaga 3960 agagccttag gaagccctca gccaacatac gctgctacac agtacagggc ccctatactc 4020 cccgagagat acacgactcc ggaagcaata caaagccagt caagccctct cccggtacaa 4080 caaccatcag tctccgacaa agagaccttc aatgaaatgt ctggacccac acaaggagat 4140 gggaatcgag taccacagcc gtgccctacg ccagagcagc caaccctgag gcgatcagag 4200 agagtgcgcc gcagaccttg cagatacatt gaagaatact gattgacaat gactgctgtt 4260 agttaccatt agaacaatgt tagaatattt acttgtatag gtcaatttag aagtagacca 4320 taagtacacg tttgtatgtt aggttactgt taaaagggga ga 4362 // ID hAT6-2_NV repbase; DNA; NEM; 6317 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 31-DEC-2007 (Rel. 12.12, Last updated, Version 1) XX DE Starlet sea anemone hAT6-2_NV autonomous DNA transposon - a DE consensus sequence. XX KW hAT; DNA transposon; Transposable Element; 6-bp TSDs; hAT6 group; KW hAT6-N1_NV; hAT6-N2_NV; hAT6-N3_NV; hAT6-4_NV; NVREP9; hAT6-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6317 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-6317 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1193-1193 (2007). XX DR [2] (Consensus) XX CC hAT6-2_NV is a young family of hAT DNA transposons and it belongs CC to a novel group of hAT transposons, called hAT6, generating 6-bp CC target site duplications upon their insertions into chromosomal CC DNA. The hAT6 transposase is distantly similar to the standard CC hAT transposase; identified hAT6 transposase sequences form a CC distinctive phylogenetic cluster and they are also present in CC different species, e.g. sea urchin. hAT6-2_NV is flanked by 13-bp CC TIRs (2 mismatches) and encodes a 746-aa transposase (6 exons). CC The genome contains only a few copies; therefore the CC TPase-encoding region in the consensus can be corrupted by CC mutations. The genome contains more than 1000 copies of CC non-autonomous transposons (e.g. the hAT6-N1_NV, hAT6-N2_NV, CC hAT6-N3_NV, and haT6-N4_NV families) transposed in the past by CC TPases expressed by some autonomous transposons similar to CC hAT6-2_NV. XX FH Key Location/Qualifiers FT CDS join(1622..2065,2169..2588,2772..2854,3067..3302, FT 3578..4204,5350..5777) FT /product="hAT6-2_NVp" FT /note="incomplete transposase." FT /translation="MIANSYFDIYTTGGWTSDGPVGVEPISTYGDGDCLFR FT AISRILTGEEDLHVKLQVRTFMELCSKHDKYLDKRFLKALTGLEDVVQQML FT DSSFNTSPSVRGKTKQECQKEGYEACIVNTIKSGTYCNIWHIFALSNVVGC FT QIQSVYPEVNVNLTGWAPNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPS FT TPPKMPSKTAMYRGSLKYQSSFSSKWTQQWPCIVSVQGEPTKFRCTICGNR FT EISCAKQGAKDVRENLNTTMHKNNNEQMKKQSTLFQTCAAESNKIDKVTSA FT EVQVVMALVKHNIALAAADTFSSLSALVEGMKSSADDGSNDNGTQKMNPLT FT VRIYDSQLQRVKTSFLDICMTSGGTAEDIFASIDGCLTSLDIPWQNCVAFG FT VDNASVNVGKRNSIMTRGQSKNDVVYFSGCQCHVVHSTAMEASTALTEATG FT FDVQDLMVDVFYWFDQSTKRKAKLVEYAQFCDQEYRKILKYGSTRWLSMEK FT VVTLLLKQYHTLRSYFLSEGESAPRFKRLEVAFRNPMTEVYLLFYQAALQI FT FLNLNLFLQRDDPLIGAINSSLKRFLQQLAMKFIPRKTVHQAASMEELLDA FT PKHLPGIRTFSLLGQPSNCRPSLMSDGDLPSAVRQASLVDGGRLRPDAVWG FT YLNGLVSPDGQPRFPRLSKVAQLVLTIPHSNAAEERVFSMIKKNMTPYRFC FT LDNEGTLSSIMTVKLEQSNQPDGIKLPPELLKSAKAATLVYNRDHR" XX SQ Sequence 6317 BP; 1847 A; 1334 C; 1356 G; 1780 T; 0 other; cagatctgtc aactctcccg gataaaccgg gagtctccag gttttgcagc aaatctccag 60 gtctccaggt ttaacgctaa atctccaggt taagtagtat tctcggagac tttaagttgt 120 aattgcccga aaacttcgtg atgatgaata aaatgttttg aaaaacacaa cgtgtgagtt 180 atttttttgc gaattctgct agacagggga tataaaacta cacatgatga ttggttgagc 240 agtagacaaa ttattgaccg taatagaaat agagaataca tcagctgagt tgattggtta 300 gttataagcc aattgcatgc ctcgtctcat aggtcacgca cgtggagtag tacgcgggtt 360 ttttctccaa aagccagaca ctgtgccatc tgtaaacatg gcgcaagcca tcgattcggt 420 ggcattcaaa tagagttttt aggggcactt ccttcgggat tcatagggtt aagaaaccta 480 gtggagaaaa agctgaaaga tatagctcca cttgacgttc agacgcaagc atttaattcg 540 ccaggtgagt aaaatcgact attttgcgtt gccaacaaac agcaattcgt aaaattcccc 600 acgttttcca ctagcattga acctttccta cacttttaga aaaataattt tgtcttttgc 660 attagctgga gcataaataa atgattccac tgtaatgaag tggattcaaa aaaagttgct 720 ggaaccaacc ggccaaaata tattaatttt taaagtagga atttaattag gtctaggaca 780 attcattcat ggccgatcag gcaatttcga ctcctggggg aggggctgga gttgtcactt 840 tttccgcaca gatcccctgc tatatagaca ccagtccttt ttctttattt cgctgggctg 900 gcagatccac aaaaggaaat aattaaatga aagagagaag aaaatttcat tgaccggtcg 960 ggtccatgga gagttattct tcgaagatct gtatacaggg atgctccgcc cagactttgg 1020 acctatatag tgaattgaaa atggtgcctc atttattaat aaaacgcaaa aaagtaccct 1080 ttttataaag ttgaaaacaa aaagttgaaa gcaaaaacac cgttttatgg tgaaaatcgc 1140 gaattcgcca tcttgtatat agtgaaatca ccgcaaaatt gtaatccttt cgtacagttc 1200 gagcatcaaa cggacccctt tcgggcgtag aatcctcgta tagtcaacat gatagagtac 1260 tccccccccc tcctggcgtc caattgcttt gaagaaaatc aatctgaaca acaacagggg 1320 aacgacaacg cgttctacta aataattcaa ctgcgtaatg gcagtttaaa tttcggatta 1380 gtttaaattt gcgattagtg cgcatgcgat attatatgcc cgagcggtct tttatttaat 1440 tcttttttcg gactataacc ccatgcgcac tgaacacaaa gttcaaactc cgagtacgca 1500 tttctgtcgt ctgaaaaatc acactgccaa ttttgttgga tggcacgtat aaatacatcc 1560 aattgaatgt gttctccccc cccccccccc agatgtttag aatgcctaaa catcttgggc 1620 catgatagcc aatagctact tcgatattta cacaacaggt ggatggacca gtgatggacc 1680 agtgggcgta gagccaataa gtacctatgg cgatggcgac tgccttttcc gggccatttc 1740 tagaattttg acaggggaag aagatcttca tgtgaaatta caagtgagga cctttatgga 1800 actgtgctca aaacacgaca agtacttaga caagcggttc ctgaaggcat tgacgggact 1860 tgaagatgtt gtacagcaga tgctagacag cagttttaat acatccccct ctgtgagagg 1920 gaagacgaag caagaatgtc agaaagaggg gtacgaagct tgcatagtga acaccattaa 1980 gtcggggacg tactgcaata tctggcatat ttttgcgctg tctaatgttg ttggctgcca 2040 gattcagtca gtttacccgg aggtcgtagg atcactgatt gaccgacagt acttttaaaa 2100 acgggcgcat cacgtccgag gtagtacggt ctccaatggt cgcctcgctt atgtggaccc 2160 acacaaagaa cgtcaacctg acaggttggg ctcctaacca cttcgttcca cttttacctc 2220 catctccgga accagtcccg acccccaaag caccagcatc aaggccaggc acgaagcgtc 2280 cagcgagccc gtcgactcct cccaaaatgc ccagcaaaac tgcaatgtat agaggctcct 2340 taaagtacca gtcgagcttc tcgtcgaagt ggacccaaca gtggccttgt attgtgagcg 2400 tccaaggaga acccacgaag tttcgctgta caatctgcgg caaccgagaa atttcctgtg 2460 caaaacaagg tgccaaggat gtccgcgaaa acctcaacac tactatgcac aaaaacaata 2520 atgagcagat gaaaaaacaa tctacgttat ttcaaacatg cgcagccgaa agtaacaaaa 2580 ttgacaaggt aaaaaatata attactaata ataataataa cgataacgat aataagagta 2640 gtagtagtag tagtagtagt agtagtagta gtagtagtaa taataaaatt tataataata 2700 ttaataataa taagttttat acaactcaat ctttgtctaa caaaataaat tgtgtttctt 2760 tcactcgtta ggtaacatca gctgaagtcc aagtggtaat ggcccttgta aagcacaaca 2820 ttgccctcgc cgcagctgat accttcagta gcttgtttcc caagatcttc ccagattcag 2880 agatagcaaa atgttaccgg gctggacgga cgaaatctac ctgcatcctg aataactagc 2940 cacattttag gaaatgacta aggcttacta taaatatcta aatatctagt ttattgcttt 3000 agccctgttg tatatatgaa ttcactgatt gcatttatta atgcgtaacg tctttttatt 3060 gaacagaagc gcattggtcg agggcatgaa atcttcagcc gacgacggat ccaacgataa 3120 tggcacgcag aagatgaacc cgcttacggt taggatatac gacagtcagt tgcagcgggt 3180 gaagacaagc ttcctcgaca tctgcatgac aagtgggggt acagctgagg atatcttcgc 3240 cagcatagat ggatgtctga catctcttga tattccttgg caaaattgcg tggcatttgg 3300 aggtattgta taggacgcta ggctacatga gactatagta cacgaggctg tatcgcaagc 3360 gcttaggagt aaacgggtgg gggttttaga ggtttcacgg tattttttat atcgctatat 3420 taatttaaat tggcctgatg tacatgggct ggtagcctcg gaggacggtg ttatgaaacc 3480 ccatgtcaat gatagccgcg tacgttttta taatctgctt ctgtcaccgt ccttttttag 3540 ttaaacgggt gttaatttgt tgttgcttta tctttagttg ataacgccag cgttaacgtc 3600 gggaaacgta actccatcat gacgaggggc cagtcgaaga acgacgtggt gtatttcagt 3660 ggatgtcagt gccatgtggt acacagcact gcaatggagg cctcgactgc actgacagaa 3720 gcaaccggat tcgacgtcca agatcttatg gtggatgtgt tttattggtt cgaccaatca 3780 acaaagcgga aggcgaagct agtcgagtat gctcagttct gtgatcaaga gtatcgtaag 3840 atcctgaaat atggaagtac tagatggctc agcatggaga aagtggtaac cctgctgctt 3900 aaacagtatc atacactacg atcctacttc ctgtcggagg gggaaagtgc accacgcttc 3960 aagaggcttg aagtagcctt ccgaaacccc atgacagagg tctatctcct gttttatcag 4020 gccgccttgc agatcttcct aaacctcaac ctatttcttc agagagacga ccctctcatt 4080 ggcgccatta actcgagcct taaacgcttc ctccagcagc tggcgatgaa gtttatccca 4140 cgaaagaccg tccaccaagc agcgtcaatg gaagagctcc tggatgcacc caagcatttg 4200 ccaggttggt gacaaaacca gatgtcatat ttatattagt aatcataaga cggcataagg 4260 tataatcata aggtcctcaa ttatgatcag agacaatgtg ttggattttc acggtttcat 4320 ctttctctca ctcgaatgag accatcaatc taaattggtg gcaacaagat gcctggcgca 4380 ctacagttaa cacccacata taagaacaca caatttcaga ggtaagactg attgtattct 4440 tatttataga atgcttattg aaaaatcagc ctcaggatgt tcttaaatgt tcttaattat 4500 tattttttta atttagtgat gtacagcata aaaaaatgtt gctaaaaatt ttaaacatgt 4560 tttcggacat ttatataaaa ttgatggaac aataattaaa aacctaatgt tcaaatagtc 4620 tactgaaatc agtaatgaaa caaaacagta accaagaagg gtgtatgact tgtatagttc 4680 ttatggtaat ttgtgtactt ttgacaccct tcccatttta taagaacatt tttttccagg 4740 ctgatattgt tcttataata gtggtgctta tttgccaaat ttcagcctga tgttctttat 4800 ccatgtgttc ttatatgcgg gtgttaactg tatctaggcg atcggttcca ttcatgaaaa 4860 cgctgcaatt tctcgatgta gttttttttt tgccgccgtg aacattgaaa ttatctacga 4920 aggtttttca gtaatgcgtt cgtggcaata tttactaacc cccatgtcct caatatttat 4980 tcatattatt catagattcc aatgtggatg ttgggcttat cacgaagact tcttcgaata 5040 agcttgttgc cgccggcgat gttagccctg acgccgcatc aacatgttac aagggagcct 5100 agctgtttta tgcctcagct ttccagtacg cccttaagcg catgcctttt aagaaagacc 5160 tgctagtaaa cgcagggttt gtacactttg aagagcgaga gaccatcgat gctgacatgc 5220 cggttttctt tgttcagagg tttgtaactg tgctgattag taatagtatg ctatttattg 5280 ttcattgctc tcgtatgcga ccacattggt ttttgtcgat taatttattt tgtttgcaca 5340 cttttatagg tatccgaacc ttctcccttt tgggtcagcc atcgaactgt aggccctctc 5400 tgatgtcaga tggtgacctt cctagcgctg tcaggcaagc cagcctggtt gatggtgggc 5460 gcctgaggcc agatgctgtg tggggctact taaatggcct ggtatcacct gatggccaac 5520 cacgcttccc gcgtctctcc aaggtcgccc agctagtatt gaccatacca cactccaatg 5580 cagctgagga gagggtgttc tccatgataa agaagaacat gacaccctac cgcttctgct 5640 tagacaacga aggtacgctg tcaagtatca tgacggtcaa gctggagcag agcaaccagc 5700 cagacggcat caagctccct cctgagctcc tgaaatctgc caaggccgcc actttggtct 5760 acaaccggga ccaccgatga gcattttaag atagccccag ggcagataac ttcaggggaa 5820 ggggttcttt accagatggt gaggagagag tagtaactcg tatcacggtg gtaaaagggg 5880 tatggatcac gtttcacgga cagacaaata gcctttaaaa tagtcgtttc tcgacagtaa 5940 aaaaatggcc aaatctcgtt tcacgaaaat acccgttacc accctgtcgg ataacaaaaa 6000 ccatgtctgt ctcagggccg atcgttataa ttgtatttgg atttgaatat gaaaaagcta 6060 cttttttatc gttgttatgg aattgtggtg gtggaaaatg gtgcatttat gaaaatgtgt 6120 attatgataa agtaaaactg tttgcattgt tattaaagtt atagcaaaat agaccagcta 6180 aacctaataa aacagtgcat tatcccgtat gtcaaattca aattcaatta tcactcaggc 6240 ctaccctctc ccccacatac gcgaaccccc cccgtaggaa tccccaggtt tcaaaaattt 6300 ttgggttgac aggtatg 6317 // ID DNA-7-16A_NV repbase; DNA; NEM; 602 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-7-16A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP207; DNA-7-16A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-531 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-531 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-602 RA Kapitonov V. and Jurka J.; RT "A subfamily of DNA-7-16_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, it was reported as the NVREP207 unclassified DNA CC transposon [1,2]. XX SQ Sequence 602 BP; 192 A; 131 C; 125 G; 153 T; 1 other; cacaggcgga ccaggattag aatcagtccc tcgtgatcct tcaggaaaat aaaatataat 60 ttgaagttgt gtcttgactg ttttctcaat aaagctagtt acattactat attagcctcg 120 tgtgttgttc ttaaggggaa ttgtggcgca gaaaggggtt tagtccctcg agagaaaatt 180 tcccccacca aagagaagag agaaagagag acaaggcaag caacttaatt tcacctaccc 240 cagcttcgag cgagttcagc gcgaaaataa aaaagctttc ggcaaaattc caccggcagc 300 ggctgcacag ataattttca caacagcata gcgagtttta gagcgatacc tctcacacgg 360 gcgaaagcat ttctagtttc gcgctgaact cgctcaaagc tggggtakgt gaaattaagt 420 tggggaagtt ttctctcgaa ggactaaacc cctttctgcg ccacaattcc ccttaaaaac 480 aacacaaaaa gctaatatag taattaaact agctttaaga agaacagtca agacacaact 540 tcaaattata ttattttccc gaaggatcac gagggactca ttcttatcct ggttcgcctg 600 tg 602 // ID BEL-10_NV-I repbase; DNA; NEM; 6307 BP. XX AC scaffold_1; XX DT 16-JAN-2011 (Rel. 16.02, Created) DT 16-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the starlet sea anemone: internal DE portion. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-10_NV_; KW BEL-10_NV-LTR; BEL-10_NV-I. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6307 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the starlet sea anemone."; RL Direct Submission to RU (15-JAN-2011). XX RN [2] RP 1-3805 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX DR Genome; scaffold_1; Positions 666045 659739. XX CC Positions [5283-5873] - Integrase core CC 'GTGAC' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 75..995 FT /product="BEL-10_NV-I_2p" FT /translation="MSHSEAPEHSEEIETDGTRRTKKTYSGLCYSVELKRN FT EIGKSMKRLLKLVEKAENAKKEDWGKMDIGAFLGEVTTAHDEFTGLFGQLG FT GLYEQDKFGEFGEESKMVPERALLERVGPLLNAIKRRQSDKLSETRSRHSR FT TSRHSSVKSTASSARVKALAEAKAAREEAHYERLIAKKYLERNEREAEEDI FT NRAKERARNETEIAILEADKKAAIASAKLKAIEQALYEEEYGVKFNLPECP FT KSEGRTQDWVSKITPVDQGCLQRATESGNVPKETVSQHRTQTASHAAVKQE FT FGDNPERSADNPFVK" FT CDS 4404..6242 FT /product="BEL-10_NV-I_3p" FT /translation="MTSPDQWYYIESALNPADQATRGLKAGALMTSTWIKG FT PDFLNQGEYVTTKEDNETLAPNDPEVRKEVKATKTAKTHKTGLGADRFKRF FT SSFESLQRALAIVIAFVRRFKSRRNTTKKEINQDDDSHRQSPIPIEILNQA FT TAIVVREAQREAFGTQWRLIKDAGLPEDAADRASQTKRKATLKSSNMYQLD FT PFVDDQGLIRVGGRLRRADLGYIERHPVLLPNDHHLSKLIVRHFHQRVKHQ FT GRQITGGAIRQAGYWLIGSHRAVSKEISQCVVCKKLRGKPVEQHMADLPPD FT RTEVAPPFTNVGFDVFGPWTIHTRKTRGGVLNSKRWGLVFTCLSSRAIHIE FT LLESMDASAFISALRRFFSLRGAASLLRCDRGTNFVGANTELVESLKAIEI FT DQSVTKYVTEQGCTWLFNPPHASHFGGVWERQINTIRRVLDGMFAELGKAQ FT LTHELLSTLMAEVVAIVNARPITAIPSDVDNPQPLSPATLLTMKTRPAGSP FT PGQFLPVDLYARRRWRQTQYLAEQFWVRWRREYLQNLQPRRKWNEQQRNLQ FT EGDIVLLKDDSAVRNNWPIGRISEAIKSADDKVRKVKVDVVRDGEKKTYLR FT PIKELVLLLPNEGKV" FT CDS 1798..4245 FT /product="BEL-10_NV-I_1p" FT /translation="MIEKVTHSLIVTPSRRNHSMSAPNGFATHACFRCFDP FT AHVARDCATKIKCSVCADERHNGLLHREKPPARSQTPEKKEKEQSQREVST FT KCTLLCDRKNSPTSCSKVLPVDVFLANSPEQAHRVYAIIDEQSNSTLITSE FT LADELGADGPSEKYFLSTCSGDKEEKQGRRVLGLIVRSLNGTEHKLPTAVE FT CDSIPEDKREIPTPEMARSFPHLREIAAHIPPPEREAGVHLLIGRDAPELL FT KVREFRNGPRGAPWAQRLDLGWTITGQMCLDFGKGPAHVLARRTTLSPEVP FT IAEPERETATDYELVPCPNQLKLTDGLLGRNALPKEEEVFATTKDDNVTSL FT SIDDQRFLEIMEKGIHKNNSGNWEMPLPFRDSNPEMPNNRAQAMSRLQNLT FT RSFARKPQLKTDYVEFMGKVLGKGHASPVPPDQIQAPPGRLFYLSHFPTYH FT NTKKTIRVVFDSSCEFEGVSLNKVLLPGPDLMNNLIGVLMRFRKEEVAVMC FT DVEQMFHSFHVNPEHRNFLRFLWFENNDPEARIIEYRMNVHLFGNGPSPAV FT ATFGLRATVNDGEEKCSEAVRQFVNRNFYVDDGLVSVSTPKEAVQLVTNTQ FT AALATRNLRLHKVVSNSVEVVQSFPAEDRAKDLKDLDLSHDDLPAQRSLGV FT YWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQGKKILQ FT RLVAMGKKPEDNGDPLGWHDPLPPVMKDKWTQWRESLSSLQGVNVPRCYHP FT KGFGEVVKSELHVFSDASQDAIGIAVYLRLINVRNQVSVSLVYGQAKVAPL FT QPTSIPRLELCGAA" XX SQ Sequence 6307 BP; 1911 A; 1697 C; 1535 G; 1164 T; 0 other; gtaaaaaagt ctggtaaaag tctggtaaac tacaacacag aggtaagccg tattgttcta 60 acggagcccc caaaatgagt catagtgaag caccagaaca ctcagaggag atcgaaacgg 120 acggcacacg ccgcacgaaa aagacgtaca gcggactgtg ctattctgtc gaactcaaaa 180 gaaacgaaat tggcaaatct atgaaaaggc tccttaaatt agtagagaag gctgaaaacg 240 ccaaaaagga agactggggc aaaatggata ttggggcgtt tctaggcgag gtaacaacgg 300 cccacgacga attcacaggg ttgtttgggc agctgggagg gctgtacgaa caagataaat 360 ttggggaatt tggagaagag tccaaaatgg ttccagaacg ggctttactc gaacgagttg 420 gaccactact caatgcaata aaacgtagac aatccgacaa attgtcggaa acaagatcac 480 gtcattctcg tacttcgcgc cattcttcag taaaaagtac agcgagcagc gctagagtta 540 aagccttagc cgaggcaaaa gcagcgcgcg aggaagcaca ctatgagcgt ctgatagcaa 600 aaaagtattt agagcgcaat gagcgcgaag cagaagaaga tataaatcgc gcaaaagagc 660 gagcgcggaa tgaaactgaa atagcgatct tagaagcgga caaaaaggcg gcgatagcta 720 gcgcgaagct caaggctata gaacaagcgc tctatgaaga ggaatacggg gttaaattca 780 atttacccga atgtcctaaa agcgaaggga gaacgcagga ttgggtaagc aaaattacac 840 cagtagacca agggtgccta cagcgcgcaa ccgagtcggg aaacgtgcct aaagaaaccg 900 tatcacaaca ccgcacccaa accgcaagtc acgccgcggt taaacaggaa tttggtgaca 960 accccgaaag atccgctgat aatccctttg tgaaatgaga gaccgccaca atgacaccag 1020 ccactaacgc ccacttagct actttcggaa acgatctatt gaactatagc gcaaacttaa 1080 accaacaaat actagccggg ttagcacgcc aaaatctgcc aaaatgccaa cccgacaaat 1140 tttcaggcga cgcaaccctg ttccacccat agaaatccgc gtttctggca atgttagaag 1200 atgccagcgt ctcagccacg cagcaaataa attacatgcg cagtttcaca agcggggagc 1260 cgcaacgact agtagatagc tatcgcaaac gtcagcaccg tgacccgagc acgctattga 1320 aagaactctg ggcagaactt gagcaacgct ttgggggccc cgcagtgata agtaaagagc 1380 tgttgcagcg actgcgcgag acggctaaat ttggtgagcg cgacgtaaat gagttacagc 1440 acttcgctga cctctgctct gacgtagaaa gccagattgt ttacctcccg gggcttgcgt 1500 gtcttaactt tccaacagca cttcaacctg tcatagaaaa acttcctcag tttatacgct 1560 ctaagtggga aaaagtagta gcacaattcg gcgacgccaa ctatggggct tatccgcaat 1620 tttctatttt cgcaaaaatc gtaaaggagc aagccaggat taaaaacaat cctaaccttg 1680 tgtcactcga cacaacgacc ccaccaactc agtcacgcaa aaaggtgctt aaaacggaac 1740 ttgaaaaacc gccagggaaa gacgaaacta taaataaaga caaacactgc ccctttcatg 1800 atagagaagg tcacgcactc actgattgtc acgccttcgc gaagaaatca ctcaatgagc 1860 gcaccaaatg gattcgcgac gcacgcctgt tttcgatgct ttgatcctgc gcacgtagcg 1920 cgcgactgcg cgaccaaaat aaaatgtagc gtgtgcgcag acgagcgaca taacggactg 1980 ctacatagag aaaagccacc ggctcgatcc caaaccccgg agaaaaaaga aaaggagcag 2040 tcccaaagag aagtctcgac gaagtgtaca ctgttgtgtg acaggaaaaa cagtccgaca 2100 tcctgtagca aagtactccc ggtcgacgtc ttcttagcca actccccaga acaagcgcac 2160 cgcgtctacg ccatcatcga tgagcaaagc aactcgaccc tgattaccag tgaactagca 2220 gatgagctcg gcgcagatgg tccctctgaa aagtactttc tttctacctg ctcgggagac 2280 aaggaagaaa agcaaggacg ccgagtcctc gggctgatag tgcgatcgct caacggaacc 2340 gaacacaaac tccccactgc agtcgagtgc gactcaatcc ccgaagacaa gcgagaaata 2400 ccaacgcctg agatggcgag gagcttccca cacctacgcg aaatcgccgc tcacatacct 2460 ccccctgaac gagaggccgg agtacacctg ttgattggac gagacgcccc ggagctactg 2520 aaagtgagag agtttcgcaa cggccccaga ggagcccctt gggctcaacg ccttgacctc 2580 ggctggacga taaccgggca gatgtgcctc gatttcggca agggccccgc gcatgtcctc 2640 gcccgacgca ccactctctc accggaagta cccatagcgg aacctgaaag agaaactgca 2700 accgactacg agctagtccc ctgccctaac cagcttaaac tgacagacgg gttgcttggg 2760 cgcaacgctc tcccgaaaga ggaggaagtc ttcgcgacca ctaaagacga caacgtgacc 2820 agcctgtcta tagacgacca aagattcctg gagataatgg aaaaggggat acacaagaat 2880 aacagtggaa actgggagat gccccttccc ttccgagata gtaacccaga gatgccaaac 2940 aaccgcgcgc aggcgatgag cagactccag aacctcacga gatccttcgc aaggaagcca 3000 cagctaaaaa cagattatgt tgagttcatg ggaaaggtgc tgggcaaagg ccacgcctca 3060 cccgtccccc ctgatcagat acaagcgccc cccggacgcc tgttttactt atcacacttc 3120 ccgacgtatc acaatacaaa gaaaaccatc cgtgtagtct tcgactcaag ctgcgagttt 3180 gagggcgtgt ccctcaacaa agtactcctg ccgggacccg acctaatgaa taaccttatc 3240 ggagttctca tgcgatttag aaaagaagaa gtggcagtca tgtgcgacgt ggagcaaatg 3300 ttccactcgt tccacgtaaa tcccgaacac aggaactttc tcaggttcct ttggttcgaa 3360 aacaacgacc ccgaagcgag gattatagag taccgaatga acgttcacct ttttggcaat 3420 gggccaagcc ccgccgttgc caccttcggc cttcgagcca cagtaaacga cggcgaggag 3480 aagtgcagtg aggcagtcag acagttcgtc aataggaact tctacgtgga cgatgggctc 3540 gtctcggtaa gcacacctaa agaagccgta caactggtga caaacacaca agctgcactc 3600 gccaccagaa acctgagact acacaaggtg gtctcaaatt cagtagaagt cgtccaatcc 3660 ttccccgccg aagaccgggc gaaggatctc aaggacctag acctgagcca tgacgacctt 3720 ccagcccaaa gatccctagg ggtatactgg gaattacgga gcgattcctt cgcctatcgg 3780 gtctcgcctc cagacaagcc tttcactaga agaggagtcc tgtctgtggt aaactcagtt 3840 tacgaccccc taggtcacgc tgctccagtt atgctacaag ggaagaagat cctccagcgc 3900 ctcgtagcaa tgggtaagaa acccgaagac aacggcgacc cccttggctg gcatgacccc 3960 ctccccccgg ttatgaaaga caagtggact cagtggagag aatcactaag cagcctccag 4020 ggcgtgaacg ttccccgctg ttaccaccct aagggatttg gagaagttgt taaaagcgaa 4080 cttcacgtgt tctccgacgc cagccaagac gccatcggca tcgccgtcta tctacgcctc 4140 attaacgtgc gaaatcaagt gagcgtgtcc ttagtctatg gacaagcgaa agtcgcgccc 4200 ctacagccga ctagcatacc gcgtctcgag ctttgcggcg cagcctagct gtgcaggcag 4260 cgcacagagt cctacgagaa atagatatag cagtagagcg cgtgtactac tacacagatt 4320 ctaaggttgt gctcgggtac atctcaaacg acagtcgacg gttctatacc tatgtggcga 4380 accgagtaca aatcatccgc agcatgactt cgccagacca atggtactac atcgaaagcg 4440 ccctgaaccc cgccgaccaa gcgacgcgcg gactgaaagc gggcgcgctc atgacctcaa 4500 cctggatcaa gggacctgac ttccttaacc aaggagaata tgtaactact aaagaggata 4560 acgagaccct agcgccaaat gacccggaag taaggaagga agtgaaagct accaaaacgg 4620 cgaaaacgca caaaaccggc cttggagcag atagatttaa gcgcttttcc agtttcgagt 4680 ctctgcagcg cgcgctagct atcgttatcg cctttgtccg gagattcaaa tctcgccgaa 4740 acacaactaa gaaagaaatc aaccaggatg atgacagtca caggcaatcg cctattccaa 4800 tcgaaattct aaaccaagcc accgccatag tagtgcgcga agcgcaaaga gaagcctttg 4860 gcacacaatg gcgactaatc aaagacgccg gtctacctga agacgccgca gaccgcgcat 4920 cgcaaaccaa gagaaaagca accctaaaaa gctcaaacat gtaccagcta gaccccttcg 4980 tagacgatca agggctgatt cgcgtcggag gcaggctaag acgagctgat ctcggctaca 5040 tcgagagaca cccagtcctc ctcccaaatg accatcatct atcaaagctt attgtcagac 5100 acttccacca aagagtcaag caccaaggta gacagatcac tggaggagca ataagacaag 5160 caggatactg gctcatcggg agccatagag cagtcagcaa agaaatcagc caatgtgtag 5220 tgtgcaagaa gttaagaggc aaaccggtcg agcaacacat ggccgacctc ccgcccgacc 5280 gcactgaagt cgcccctccg ttcacgaacg tcggatttga tgtgttcggg ccgtggacta 5340 ttcatacaag gaagactaga ggaggagtcc tcaactccaa gcgctggggc ctagtattca 5400 cttgcctcag cagccgagca atccacatag agctgctgga gtcaatggat gctagcgcct 5460 tcatctccgc tctcagaaga ttcttttccc taagaggagc agcgtcactc ctgcgatgcg 5520 atcgaggcac aaattttgta ggagcaaata cggagctcgt agagtccctc aaagctatcg 5580 aaatagatca gtcggtaaca aagtacgtaa cagagcaagg atgtacgtgg ctcttcaacc 5640 ctccccatgc ctcacacttc ggcggcgtgt gggagaggca aatcaacacc atccgccgag 5700 tcctagacgg catgttcgca gagctcggaa aagcgcagct aacgcacgag ctgctctcca 5760 cgcttatggc cgaagtcgtc gctatcgtta acgcgcgacc tattacagca ataccatctg 5820 atgtcgataa cccacaacca ctctcacctg caaccctact cactatgaag acacgcccag 5880 ccggctcccc tccaggtcag ttcctaccag tggacctgta cgcacgtcgc cgctggagac 5940 aaactcagta cttggccgag caattttggg taaggtggag acgtgagtac ctacaaaatc 6000 tacagcctag gcgcaagtgg aacgagcaac agagaaacct ccaagaggga gacatcgtgc 6060 ttctcaagga cgactccgcc gtacgcaaca actggcccat aggacgcata tcggaggcga 6120 tcaagagtgc cgacgataaa gttagaaaag ttaaagtaga tgtagttaga gacggagaaa 6180 agaagaccta cctacgccca atcaaagaat tagtcctgtt attaccgaac gagggtaaag 6240 tttaaaataa tgtataagta gcaaggataa gaatccttga gcgaggagtg taactgacac 6300 gcatcaa 6307 // ID RTEX-3_NV repbase; DNA; NEM; 5486 BP. XX AC . XX DT 31-MAR-2009 (Rel. 14.03, Created) DT 31-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone RTEX-3_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; CR1e-3_NV; KW RTEX-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5486 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5486 RA Kapitonov V.V. and Jurka J.; RT "RTEX non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 724-724 (2009). XX DR [2] (Consensus) XX CC This non-LTR retrotransposon belongs to the RTEX clade, a sister CC clade of RTEs. Contrary to RTEs, RTEX elements code for the ORF1 CC protein that contains the esterase domain, similar to ORF1 in CC some families of CR1 and L2. XX FH Key Location/Qualifiers FT CDS 13..1764 FT /product="RTEX-3_NV_1p" FT /note="esterase." FT /translation="MAEMEELENFLSTNKKNQLKWSGNSDKLKDFLVHLME FT EGSNEKLVSVNQIGTTSVLKFESVTVNFYLSTNTLQVQGAGKDVYISKLTT FT LATKSSSNAMNEIQTGAKVQPAAKSIEKENKKEEQVVHDARYEEIEAFMAT FT QRVFNAKIEDKVTKNTIEIGEQSIEIEDWKQKTKHGISDAKRECECKIEML FT RSELSASINDVAKKISSLTSKVTSEFKLIKNKSTSAAETILKILGELGEIK FT EQLVNTEQSLTSRITKSPCLNQTEGSTIEVTSPQDMNSHKDSQRISKDDSW FT GQITYTVDTKNRFETLQDEVQPGVPQSRGKRASETWKRQHNGRPNIKPLEQ FT TSPTRQTRMDANRTKPETSEAKGPILLIGDSILRGIQQRRFCPDRYVNKQY FT VAGGTKELLQYIQTMDDDRNDYEHIIVHSGTNDIEKLRVNEIAVNMENCVN FT ALKGRWPSSRIAVSGILYAPKRDGTKIDDTNYCYEDICKDNGAHFINNQRV FT TSDTFGNLDPEVFHDDVHLNNNIGTKKFVSNIKTRTGLRRDTERSERRARA FT PPYKQQKRTMWGSYDQSFPPLQALNALADYFRRHRPS" FT CDS 2084..5323 FT /product="RTEX-3_NV_2p" FT /note="endonuclease and reverse transcripase." FT /translation="MPSINKNVLWIKLKKTYFHLKKDIYIGTVYLSPQREN FT NNELLDDLEKEILNFSTKGDVIVQGDFNARTGALQEYVLNDDNSKKFFELP FT EDYETDTTNRRNSQDVNTTDSRGKNLIELCTAFNLRILNGRSVGDLEGRKT FT CFKYNGSSVVDYVIASNNIMNSINYFIVKPLEPHLTDHCSLSYALSVRSPS FT KGAEAERTDQNEGLTEFKRLIWKDGIQEKLKEILVSNDMQQKLSDALKNNS FT TETMTAQFTQALKEACEAAGMKYQNTKTVNNQNNKPWFDEECKTEKENIRS FT LGYRISKEPNNHSLRDALNRKRRIFKKTCKRKKENHYANIINNIDFRNSKS FT LWRQLKNCFHIGKSTKASPIETENAGKFFQHFKNLNATNEAQPKQNGRIDH FT GNYREGPLDYRISEEEIIKAIEKLKSGKAPGADNILNEFLKCSKTILKSYL FT GNLFNKILNSGVYPTMWSYGLIVPIHKKEDPSKPENYRGVTLLSTLGKVFM FT SIMNKRLYNHLTEKGILKTEQCGFRKEQGTIDSIFALKSLIDKHVKAKPQK FT TNNFLFACYVDFSKAFDCVPRAKLFEKLKAVGVTGRFLDIIQSMYSNDKSS FT VKIGSSITESFRCYAGVKQGCMISPTLFNFYLSDLPEKLNEKYRNDIDLNG FT VPLSCILYADDLVILSKSAKGLQEYLNSLEEYCKASELSINLDKTKVMIFN FT NTGKTMNNYRIFYGTYKIENVKSYKYLGLHFCPYGNFNLAKEELKKVALKA FT MFKLRKEMGEHFRQDIKLTLRLFDTLIQPILLYGSEIWGADYKGKLEKDPI FT EMVHTKFLKWLLGVNRYCSSNACRAELGRFPLRTKAKCRAIKLWLKLSNNN FT GNNEKLSRKAFATISNYENKNFWHRKIKQILDLAGRSDIWLTDTNTPEATY FT SFLQQRLYDIEQQTWLSSIQNDNRKDQAQKNKLRTLRKFKLSHNLEDYLTD FT VKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKVEDEE FT HFLLECPAYKDDRDNLLDFLKTHAGINVRHHANKENNFVRIMGLSRNENVN FT RRLAKHIFECMKARNVKLDDNVR" XX SQ Sequence 5486 BP; 2094 A; 1016 C; 1108 G; 1268 T; 0 other; tgcagatgca gcatggctga aatggaagag cttgaaaatt ttttgagtac taataagaag 60 aaccaactaa aatggagcgg aaactccgat aaactaaaag atttcctagt gcacttgatg 120 gaggaaggaa gtaacgaaaa actagtaagc gtaaaccaaa tcgggacgac aagtgtacta 180 aaattcgaat cggtgaccgt taacttttac ttgagcacga acacgctgca ggtgcaaggt 240 gcgggaaaag acgtttatat aagtaaactc actactctag ctactaaaag cagtagtaac 300 gccatgaatg agatacaaac tggagcgaaa gtacaaccag cggctaaatc gatcgagaag 360 gaaaataaga aggaagagca ggtggtgcac gatgctcggt atgaggagat cgaggccttc 420 atggcgactc aaagagtgtt taacgctaaa attgaagata aagtcacaaa gaataccatc 480 gagatcggag agcaaagcat agaaatagaa gactggaaac agaagacaaa acacggaatc 540 tccgatgcta aaagggaatg tgaatgtaag attgaaatgc tacggtccga attaagcgct 600 agcatcaatg atgttgcgaa aaaaatatca agcctgacaa gtaaagtgac aagtgaattt 660 aaactgataa aaaacaaatc gacgtcagcg gcagagacta ttctgaagat actgggagag 720 ctgggagaaa ttaaagagca actcgtgaat acagaacaat cactcacatc acggatcacc 780 aaatcgccct gtcttaacca gaccgagggc tccacgatag aagtgaccag cccgcaagac 840 atgaacagtc ataaagatag ccagagaatt agtaaggacg acagttgggg acaaatcaca 900 tacacagtcg atactaaaaa ccgttttgaa acgctccagg acgaggtgca gccaggtgta 960 ccacaaagcc gcggtaaaag agccagtgag acctggaaaa gacaacataa tggacgtcca 1020 aatataaaac cattggaaca gaccagtccg accagacaaa ctaggatgga cgcaaataga 1080 accaagcccg agaccagtga agcaaaaggt ccaattctac tgatcggcga ttcgatcctg 1140 cgaggaatcc aacaacggcg attttgtcca gatcgttacg ttaataaaca atatgtcgca 1200 ggaggaacga aagagcttct acaatacata caaactatgg acgacgacag gaacgattat 1260 gaacacatta ttgtacattc aggcacaaat gacatagaga aactgcgtgt aaatgaaata 1320 gctgttaata tggaaaactg tgtaaatgca ctcaaaggtc gctggcccag ctccagaata 1380 gctgtcagtg gaattttgta tgctcccaag agagatggca caaaaataga cgacacaaac 1440 tactgctacg aagacatttg caaggacaat ggggcccatt tcatcaacaa tcagcgcgtt 1500 acaagtgaca cctttggaaa cctcgaccca gaagtttttc acgacgatgt acacctaaat 1560 aacaacattg gaaccaagaa gtttgtttca aacatcaaaa ctagaaccgg tttgcgaagg 1620 gacacagaga gaagtgaaag aagagcaaga gcgccaccgt ataagcagca gaaaaggaca 1680 atgtggggct catacgacca atcattccca cccttgcaag ccctcaacgc attagcagat 1740 tattttagaa ggcaccgtcc aagctaagtg ctctttttgt tttatttatt taacattcac 1800 gatatcttct ccagaatatt cacaattaag aatcggctgc tggaatatta atggcttcag 1860 cagtaaaacg tttggaaaca aattaaacca aaatgactgt ctggatacaa ttaacaagca 1920 tgaaattttt ggtatagttg agacacatgc aaataccaat acaaacttaa aagttacaaa 1980 ttttaagcat tatgtaaaac atagagaagg ttcaaacaat tcacgaagtt atgggggaat 2040 agtaatatat attaaaaata atataaacaa tggcgttgta tacatgccat caataaataa 2100 gaacgttttg tggataaaac ttaaaaaaac atattttcat ttgaagaaag atatttatat 2160 aggaacagtt tatctaagtc cacaaagaga gaataacaat gaattacttg atgatctcga 2220 aaaagaaata cttaattttt caacaaaagg tgacgtcatt gtacaaggtg actttaatgc 2280 gcgaactgga gctttgcagg aatatgtatt aaacgatgat aacagcaaaa agttcttcga 2340 acttccagaa gattatgaga cagatacaac aaatcgcaga aattctcaag acgtaaacac 2400 gacagatagc cgagggaaaa atcttataga gctttgtacg gctttcaatc tcagaattct 2460 gaacggaaga tcagttgggg atctcgaggg aagaaaaaca tgtttcaaat ataacggaag 2520 tagcgttgta gattatgtga ttgcttcaaa taatatcatg aatagcatta actattttat 2580 tgtcaaacct ctggagccac atctaactga tcattgctct ctatcttatg ctttatctgt 2640 ccggagccca tcaaagggtg cagaggcaga gaggacagac caaaatgaag gattaacaga 2700 attcaaaaga cttatctgga aggacggaat acaggagaaa ttgaaagaga ttttagtttc 2760 taatgatatg caacaaaaac taagcgacgc acttaaaaac aatagcacag agacaatgac 2820 cgctcaattt acgcaagcgc ttaaagaggc atgcgaggcg gcgggcatga aatatcaaaa 2880 cacaaaaacg gtaaacaatc agaacaacaa accatggttt gacgaggaat gtaaaacaga 2940 aaaagaaaac attcgctcgc ttggataccg aatctcgaaa gaaccaaaca atcattcttt 3000 aagagatgct ctgaatcgga aaaggagaat ctttaaaaaa acgtgcaaaa gaaaaaaaga 3060 aaatcattac gcgaacataa tcaataatat cgactttaga aattctaagt ctttatggag 3120 acagttgaaa aactgtttcc acatcggtaa gtcaacaaaa gcgtccccaa ttgagactga 3180 aaatgcggga aaattttttc agcacttcaa aaatttgaat gcaacaaatg aagcacagcc 3240 caagcaaaac ggacgaatag atcatgggaa ctatcgggag gggcccctgg actacagaat 3300 aagcgaggaa gaaattataa aagccataga aaaactaaaa tctgggaagg caccaggcgc 3360 ggacaacata ttgaacgaat ttctaaagtg cagcaaaacg atcttgaaaa gttatctcgg 3420 taaccttttc aacaaaatat taaactctgg ggtttacccc acaatgtgga gttacggttt 3480 aatagtcccg attcataaga aggaagatcc atcgaaacct gaaaactaca ggggcgtaac 3540 acttttgtca acgttaggca aagtttttat gtcaatcatg aacaaaagat tatacaatca 3600 cctaacggag aagggcattt tgaaaacaga acaatgtggt tttaggaaag agcaaggaac 3660 aatagacagc attttcgctc taaagtcact aattgacaag catgtcaaag cgaaacccca 3720 aaaaacaaac aatttcctgt ttgcgtgcta cgtggacttt agtaaagcat tcgactgcgt 3780 ccctagggcg aaactatttg aaaaactgaa agcagtaggt gttactgggc gtttcctcga 3840 cataatccaa tcaatgtact caaatgacaa gtcttccgta aaaattggaa gctccataac 3900 tgaatccttt cgatgctacg caggcgtgaa acaaggctgt atgatttcgc caacgttgtt 3960 taatttttac ttgagcgacc tcccagaaaa actaaatgaa aaataccgaa atgatattga 4020 cctaaacggt gtgccattaa gttgcattct ctatgccgac gacttagtta tcctatcaaa 4080 atcagcaaag ggcctgcaag aatatctgaa cagcctcgaa gaatattgca aagcatccga 4140 actatccatc aatctagata aaacaaaagt aatgattttt aataacaccg ggaaaactat 4200 gaataattac cgaatctttt acggaactta taaaatagaa aatgtcaaaa gttataagta 4260 ccttggactc catttttgcc cttatggaaa ttttaatttg gctaaggagg agctcaaaaa 4320 agtagcatta aaagcgatgt tcaagttaag aaaagaaatg ggagagcact tcagacaaga 4380 tatcaaacta actctccgcc tttttgacac cttgatacaa ccaatcctac tttatggaag 4440 cgaaatatgg ggagcggact acaagggaaa gttagaaaaa gatccaatag aaatggtcca 4500 caccaagttt ctaaaatggc ttctcggcgt aaaccgatac tgtagctcga acgcgtgtag 4560 ggctgaatta ggacgattcc ctctcagaac aaaagcaaag tgtagagcga tcaaactttg 4620 gcttaaactt tcaaacaaca atgggaataa cgaaaaactc tcccgcaaag cattcgctac 4680 catatctaat tatgaaaaca agaacttttg gcatagaaaa attaaacaaa tactagacct 4740 tgcgggtagg agcgatattt ggctgactga cacaaacact cccgaagcaa cttacagttt 4800 tcttcaacaa aggctttatg acattgaaca acagacatgg cttagctcta ttcaaaatga 4860 caacagaaaa gaccaagccc aaaagaacaa attgcgtacg ctcagaaagt ttaaactgtc 4920 ccacaattta gaagattatc taacggacgt aaaaaatatt gaccatagga ttgcccttac 4980 taaattcagg ctaagcaatc ataagctagc aattgaaact ggaaggtatg aaaagccata 5040 taaaaaacct aacgaaagaa aatgcttagt atgccagaca ggtaaagtgg aggatgaaga 5100 gcattttctg ttagaatgtc cggcctataa agatgatcgg gataatttac tggatttcct 5160 taaaacgcat gcaggtatca atgttagaca ccatgccaac aaagaaaata atttcgtcag 5220 aattatggga ttgagccgga atgaaaacgt gaatcggcgc ttagcgaaac atatttttga 5280 atgtatgaag gcaagaaatg tgaagcttga tgacaacgta cggtgacgtc acctaatcat 5340 tcgaaacaag aaaaaaaaat gcaaaaggca aagtaagaaa aacatattat ttgtggattt 5400 acgccgatgt aaatgtttta taaggtgcca tgaataaaat ctatctatct atctatctat 5460 ctatctatct atctatctat ctatct 5486 // ID piggyBac-3_NV repbase; DNA; NEM; 2564 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-3_NV autonomous DNA transposon - DE consensus. XX KW piggyBac; DNA transposon; Transposable Element; piggyBac-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2564 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2564 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-3_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 642-642 (2007). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 235..2247 FT /product="piggyBac-3_NVp" FT /translation="MASVRVRRNRQRNLTVDEVLSSVFDENTTDLDSSDSE FT DGEDELPTLFPAIPADLEDDSVESVSSYEDSSSSSSDSEFDRRQSVTNQRQ FT EKARNLRECSQNARRTIRGVRRGRGARRGRAISVQQRREIQDGGRQQYIWS FT KEVNRRILKPFTNAVGLANRGQRREKSALEYFELFFDQEVWDCLVTMTNLN FT AERKGAKGTSGGQWKPITQDEMKAFFGLNIAMGIVKLPEAKMYWQKKIWLL FT TVPSFSQVMSRNRFFQILQYIHVSDDSNIVPSGQPGYDKLHKIKPLLNLLF FT PKFENAYNLHKNISIDECMIPWRGRLSFRQFIANKPVRFGIKVWVLADSES FT KYVYRQQLYIGKNPGERAEVGLAARVVKELCSGLEGMGHHLYTDNYYTSVE FT LYQFLFDNQIYACGTIKGNRKNFAKEVLFENTRGLARGSSKWLMCGPLLAV FT GWLDNKAVYFLSTIHPPEFPVRAPVHARNVKRRGAGEGGQSGDIPCPPLLK FT DYNAYMGGVDQSDQMLRYYTCIRKTVKWYRRVLFHEVEVAIHNAFVLECED FT REGTPRPIRTSLEFREELAENLIGNMRVAHNAAQRPPRNEELRLTDVGLHL FT PEMRQDKGNCAVCSKKIRKTHSDRYKDVPLARRPKVPYVPRPSIYCNVCNV FT FLCLQKDQNCWKDFHTKVEYWR" XX SQ Sequence 2564 BP; 769 A; 458 C; 600 G; 737 T; 0 other; ttaacccttt ccggaccagg tagcactaca gtgctacctg accacgttgt catataatta 60 gggagtcctg tggtacccat ttgccgtgaa ttagaacttt taggggcctg ggcactaaaa 120 tatgtaagag gaagccattt tcttttgaga cattcaaaga tcatcgattt ctcgtgtttt 180 ggagtgatat ttttcaattt ttcgacctga tgtttacagc tggggtattt aaaaatggcg 240 tcagttagag tgagaagaaa tcggcagcga aatctaacgg tagatgaagt tttatcgagt 300 gtttttgacg aaaacacaac agatttggac tcttctgact cggaggatgg cgaagatgaa 360 ttaccaacgt tattcccggc aattccagcc gatctagaag acgattctgt cgaaagtgta 420 agctcttatg aggactccag cagctcttcg agtgattcag agtttgatcg acgtcaaagt 480 gtgacaaatc agcgacaaga gaaagcgaga aatcttcgtg aatgttcaca aaatgctcga 540 agaactattc gaggggttcg cagaggaaga ggtgccaggc gaggcagagc aatttcagtt 600 caacaaagga gagaaatcca agatggcggc cgtcaacaat atatttggtc gaaagaggtc 660 aacagaagaa ttttaaaacc gtttacaaat gctgttgggc tggcaaatag aggacagagg 720 agggagaaat ctgctcttga gtattttgaa ttattttttg accaagaggt ttgggattgc 780 ctcgtcacta tgaccaacct gaatgcagag aggaagggag ccaagggtac tagtggtgga 840 caatggaaac caataacaca ggatgaaatg aaggcctttt ttggcttgaa cattgctatg 900 ggaattgtta aacttcctga ggcaaaaatg tattggcaga agaaaatatg gctcttgact 960 gttccctcat tcagtcaagt catgtctcgt aacagattct ttcagattct acagtacatt 1020 catgtctcag atgactccaa cattgtgcct tctgggcaac ctggttatga taaattgcat 1080 aaaatcaagc cacttttgaa tcttcttttc cctaaatttg aaaatgccta caatctgcac 1140 aaaaacattt caattgatga gtgcatgatt ccatggagag gacgtttatc atttcgccag 1200 tttattgcga acaaacctgt ccggtttggt atcaaggttt gggtgctagc cgattctgaa 1260 tcaaagtatg tctaccgaca gcaactctac attggaaaga atcctgggga aagagctgag 1320 gttggactgg cagcaagggt tgtaaaagag ctgtgttcag gccttgaagg tatgggacat 1380 cacctctata ctgacaacta ttataccagt gttgaactct atcagttctt gtttgacaac 1440 caaatatatg catgtggaac aataaaggga aacagaaaaa actttgcaaa ggaggttcta 1500 tttgagaata caagaggact tgctaggggt agtagtaagt ggcttatgtg tggacctctt 1560 ctggcagtgg ggtggcttga caacaaggct gtatattttt tatctacaat tcacccccct 1620 gagtttccag ttcgtgctcc agtccatgca agaaatgtca aaagaagagg tgcaggtgaa 1680 ggaggacaaa gtggcgatat tccttgccca ccccttctca aagattataa tgcctatatg 1740 gggggtgtgg accagtctga ccagatgctt aggtactata catgtatcag aaagacggtg 1800 aaatggtacc gtcgtgtact gtttcatgaa gtagaggtgg caatccacaa tgcttttgtg 1860 ttagagtgtg aggatagaga gggtacacct agaccaatca gaacctctct ggagttcaga 1920 gaagagcttg ctgagaactt gattggcaac atgcgggttg cccataatgc tgcccagaga 1980 ccccccagaa atgaggagct aagactgact gatgttggtt tgcatttgcc tgaaatgcgt 2040 caggataagg gtaactgtgc tgtttgtagt aagaaaataa gaaaaaccca ctctgacagg 2100 tataaggatg tgccattggc cagaagaccc aaggttccct acgtgccacg ccctagcatc 2160 tattgcaatg tgtgtaatgt cttcctctgc ttgcagaaag atcaaaactg ttggaaagat 2220 ttccatacaa aagtggagta ctggcgatag actatgtttt taggtgtttt tgcattgaca 2280 ttttctagtt tttatgaaat tatatgttat gtgtctaaag ataaaatatt gatttttagt 2340 atgatatttt ttgataaatt cttattttgt aaattcaatt tccatcaaac caatgtactg 2400 agtactgaaa tatctaattt aaagtaaaga acaacattta agctttaatt tcatatataa 2460 cataaagtac atttcaaagt ctgggttgtc ccaataaata ttctttcgtt atcacacatt 2520 tgctcttgtt ttgggcctca ggagcctggg tatgaaaggg ttaa 2564 // ID Gypsy-1-LTR_NV repbase; DNA; NEM; 249 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-1_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1-I_NV; KW Gypsy-1-LTR_NV; Gypsy-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-249 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-249 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-1_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 470-470 (2007). XX DR [2] (Consensus) XX SQ Sequence 249 BP; 62 A; 51 C; 51 G; 85 T; 0 other; tgaagagtgt gtgacgctgg ccgctagggc ctaggtctta tgtaagaccg ctgaccggct 60 caggagagag cagccggcca tcttgttttg aacattattc atgtaagtcc tacgcgttca 120 tttgttatat cctagttacc gttatttgta atcctcagtt taataataat ccttgattta 180 ttgtattgcc ataggacttc ctcatctttg tcaataaaac caattgaaca tcgaggagta 240 ttttcttca 249 // ID DNA-9-8_NV repbase; DNA; NEM; 928 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-8_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-928 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-928 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-928 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 928 BP; 254 A; 201 C; 211 G; 262 T; 0 other; catgctcgag gatccagcgt actttgcggg cgctcccaaa ggtcactacc gcagaagagc 60 cgctggaaaa gtttataaca attttgagtt ccaaaacgct gggagctgct gtgctgtgat 120 tgggcctttt ttttaggtgt gaaaaaaggc ccaatcacag cacagcagtg tttacttgta 180 aatcctaatt aacaacgctc gcgtcgctga caaatgcttt gcctgtttga tggatcaagt 240 tactttgttt tgtacgataa gagaaactct gaagccagaa caattgcttg tgatacagtc 300 gtgtttagtg ggaaagagcg atgtttttgc tcagctaccg acaggcttcg gtaaaagcct 360 ggtatttcaa atcttgccac ttcttttcaa agaagcccgc aaaattggcg actcgaatgt 420 tcccgagaac cctgtcgttg tggtcgtttg cccgctgaag tcgatcgtcc aactgcaagc 480 gaagaagctc caagcgcttg gagatcagat ctatattgag acgaattctt tcttgagttt 540 aagtaaactt acgagtgaaa attcgcctgc tggagcgtcg ggctgcagca tgaaaataac 600 gtaaacaaag gctaagtttt ccacattttg tctacgacag cgtttcttcc caaaaagttc 660 aaactaataa aaaataagac aacgatttag tgtgtactga ccgaaaagga acatatttct 720 gacgttccat tttggtatct cgaagaaaga aactgtattt aattccgtca gaataatttt 780 gatttcatcg gctgtcagtt ttaaattggc ttaagcttcc gacgtgtcac gcccccagaa 840 ctagtcttac taggaaactt ttccagcggc tcttctgcgg tagtgacctt tgggagcgcc 900 cgcaaagtac gctggatcct cgagcatg 928 // ID Gypsy-16-I_NV repbase; DNA; NEM; 3655 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-16_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16-I_NV; KW Gypsy-16-LTR_NV; Gypsy-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3655 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3655 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-16_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 461-461 (2007). XX DR [2] (Consensus) XX SQ Sequence 3655 BP; 1032 A; 947 C; 819 G; 857 T; 0 other; tttaatcaac atattttctg aagtcccatg gataaagtac tgcgtcctga acgcctagaa 60 accgatccaa atagcagcac ggcccagaag gaatggctcc attggaaaag gaccttcgag 120 aatttcgtac aagttctacc tcagacgggc ctggacaagt tgaccgtttt aactaacttt 180 gtttctccaa cactcttcca acacatcgaa gattgtacgg aatacgatgc agcaattgag 240 gcgctacaag ccctttatgt tagaccacgg aatgagatct tcgctcgcca tctacttgca 300 acgagacgcc agcaaccatc ggaaagctta gatgagtact tgcaagctct gaaaacactg 360 agtaaggact gtgattttaa gagtgtaacc gcagcgcagt acagcgaaga gagcatacgg 420 gatgcgttta ttacaggtct gcaatccaac acaatcaggc aacgattgtt ggagaacaaa 480 acacttgatc taaagaccat gtttgaccag gctcgagctc tggagtcagc tatgaggagt 540 tcagaatcat atggagcacc acagatacct ataaatgcag cactaccttg taacagcacc 600 tcattgtcag cagaacagcc tgacgagtct actgtagcta caatgaaacc cgataaagct 660 acttgctttt tctgtggaaa caagaaacac cctcgaccga agtgtcctgc cctggaggct 720 atttgcaaca agtgtcaaaa gaaaggccat tttgctaaag tttgtaaagg aaaggcggtt 780 ccaaaagaaa gagtttcggc agcaacttgg tccccgatac tcgccacatt gacagctaac 840 ccaccaaaat ccctctctaa atcatgtggt gtcgtcaata tccaaggatt gcaagtcaag 900 gccctgtttg acagtgggag tagtgaaagc tatatccatc ccagtctagt agagcaagca 960 agtctgacag tccagccctc atctagtacc gtatccatgg caacctcctc gacaggcgcc 1020 atcaaggtta gtggtacttg cacagttgat cttacctacc aaggacggag atatgaaggc 1080 ctcaagtttt ctgtactccc tgggctatgt gcagacctca tattaggagt agactttcag 1140 tcaaagcacg aaagtgtcat cttccagtac aagggctccg aaccgcccct ctccgtctgt 1200 agcttcagca ctctgaatgt agacccgcct gagccatttg caaacctgac agcagactgt 1260 catcctattg ccacaaagtc acgccgctac agccaagaag attccacgtt cattgatgaa 1320 gaagttaaga ggctgcttaa tgaaggaatc attgagccca gtcgctctcc atggcgagca 1380 caagttgtag taaccaagga tgagaatcac aagaagaggc tagtaattga ttactcacag 1440 accatcaaca ggtttaccct cctcgacgca ttcccattac cacgaataac cgacttggtt 1500 aaccagatcg cccagtacaa agtcttcagc actattgatc tacgcagtgc ttatcatcag 1560 atccctctca aagatgagga taaaccgtac acagcattcg aagctagagg taacctgtat 1620 cagtttagcc gactcccatt cggcgtcacc aacggggtgg cctgcttcca gagagagatg 1680 actaagtttg tggaagagaa caatctcaaa gcggtcttcc cttatctcga caacatcaca 1740 atctgtggga aagaccaaga agagcatgat tccaaccttc agagtttcct tgaagctgct 1800 aagcgcaaga acatctgcta taacaacgac aagagcatct tctccaccag gcgtcttcct 1860 atccttggat atgtggttga ggaagggaat atcagtccag acccagaacg tctacgccct 1920 ttgcgagagc tacccgttcc aagtgactca aagtctctga acagatgcct cggattgttt 1980 tcctactact cacaatggat acccgcatac tcggatcgaa tcaagccaat aacctcctgc 2040 aaggtttttc cattacccga gcccgctgtc gcggcctttg agagtatcaa gaagacggtg 2100 gaggaagctt ttgttagtgc aatcgatgaa agcattccat ttgaagttga gacggatgct 2160 tcagaggtgg cattagctgc cactctcagc caaaatggga ggccagttgc attcttctca 2220 agagccttac agggcagcga gctcaagcac gcctcagttg agaaagaggc acaagcgatt 2280 gtagaagctg tccgacactg gaggcacttc ctaacaggga ggcacttcac tcttaaaaca 2340 gaccagaaat cagtatctta catgtttgac cagtgccaca aagggaagat caagaatgat 2400 aagatcatgc ggtggaagat cgaactctcc tgctatagtt tcgatatcat ttaccgtcct 2460 ggtaaagaga acattccacc cgacactctg tccagagcta cttgcgccac gttgagtgaa 2520 gatcccctct accagctcca cgagtcactc tgtcatccag gggtcacccg actcaaccac 2580 ttcgtacgca ccaagaacct cccttattcc cttgaggaga tcaagagcat gacaagtaag 2640 tgtccagttt gttgtgaatg caaaccacag tttcatcaac ctcccaaagt tcctctcatt 2700 aaggctacta aacctttcga gaggataaac attgatttca agggcccctt gccaagtaac 2760 aatggcaaca agttcttcct caatgtggtt gatgaatatt caagattccc ttttgtcttc 2820 ccttgtcctg atgtgtctac accaacagtg atcaagtgtc ttacctcctt gtttacgatg 2880 ttcggtatgc cagcctatgt acattcggac aggggctcct ccttgatcag ccaggaactg 2940 cgagacttcc tgaatgaaaa aggggtagcc acaagcagga caactgctta caatcccgaa 3000 ggcaatgggc aagtggagag gtataatgga gtggtatgga aggcaatttc agcatccctg 3060 aagtctaaga atctgccagt aaagcgctgg caagaagtcc tccctgatgt tctacactcc 3120 attcgttctc tgttgtgcac ggctaccaat gagacacccc atgagcgatt cttcggtttt 3180 cccaggcgat cctcttccgg atcttccatc ccaacatgga tgagtgagcc tggaccggtc 3240 ctactcaagc gtcacgtccg tgcaagcaag acagatccgt tagttgatga ggtggaattg 3300 cttcaggcga atcctcacta cgcccatgtg cgctatccag acggccgaga aacaacagtc 3360 tctaccaagc atcttgcccc caaaggtgaa gtaccaacaa tgtacccact ccctcaagtt 3420 aagcctactg ttccaggtga gcatcaccct gctactggta gttccccacc ttcctcggag 3480 atagaagtgg agataggtgt gggcgaagaa gtgccacagg tcagtacagg tcttgatggg 3540 cagcctccct tgcgacgttc ggagaggacc cgacgtccag tggacagact taacctctaa 3600 ccgaggggtg aagaatgccc ccgtgctcag acttaacctc taacagaggg gtgaa 3655 // ID DNA-TTAA-6_NV repbase; DNA; NEM; 1024 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-6_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP205; KW DNA-TTAA-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1024 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1024 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1024 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-6_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1024 BP; 310 A; 196 C; 188 G; 330 T; 0 other; aacactcatc aatattcaat aggcatgttg accaatcgga tgtcgttctt cggacacgtg 60 aataggcttt atacctagca atacacccaa caaatctaaa gcacggggag ggaattgaaa 120 tcgtctccag ggaaatattg gggtacaata gaaaaacaat gacagactaa cgaacatgaa 180 acattatata aagctatcat gacgtcatga aggattatat aaaaccctca tgacgtaatg 240 aagctttata taatgttgca tccagcagat ttggcaaata aacaacgaca tacgtaagat 300 cacaaacagt aaactacttt attcctagta aatagcatag tttacaatct actttatggt 360 atgttttaga tacactctca taaacggact ccataatcaa acagtgttca aaagtgactt 420 agctgtttgg tagtccaaga gtccctttgc cagatggcag cttcattttg ctcagacaat 480 cgcctatttc ttcttttttc taagccgtcg tcacgctgtc tttgaccagt ttcgactcgc 540 atgattatgt tcaacctgag aataaagaaa gtcagaatga tctaagacct gaatgaaaca 600 gtataaacac cgacaacttt atatgtacag tactaacctt gggtcatttt gcttagccag 660 ttggactgcg tttcgtaatt ggattgaatg aagtccagtt attagtgtat agaggcttct 720 cggtggatat cttgtgccgt cggccttgtt ttttaaagat ttcagtttcc aaatatgcga 780 cgtttttgtc ctcgactagt gctcgactag caagtcagtt tatgtaaaac tgcgtgctgt 840 ttgcccgcga tctaatgacg ttagttttgt ttattgttct acttgctttt tttaaccgaa 900 ttccggtagt ctttttaatg acaattcaaa agctattgtt ttttttttcc atcgcgattg 960 atcaacatgc ctattgaata ttgatgagaa ttttaagcca ttcaaaacac tcgaagatcg 1020 tgtt 1024 // ID Kolobok-N5_NV repbase; DNA; NEM; 535 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N6_NV; Kolobok-N5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-535 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 348-348 (2007). XX DR [1] (Consensus) XX CC Kolobok-N5_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N5_NV transposon CC is characterized by 50-bp TIRs and TTAA target site duplications. CC This family is composed of several hundred elements that are from CC 6% to 15% divergent from the consensus sequence. XX SQ Sequence 535 BP; 154 A; 103 C; 109 G; 169 T; 0 other; acacgaggtt ccgctataaa agggaaagct cctcccaccc ccgggctcaa atttgcaatt 60 ataatcagaa cactgccacg ctagcagtca caaattataa gtctcctgta aaattgctta 120 tctctgagcc tcagtcggct ggaataaaac tatttttgca caggtaacaa gacagttgtg 180 ttaagagatt gataaattag tgatttgctg tccactcacg ttttcggtgc aaaattttaa 240 attttgcgct atccataatc taacgcatct gcataaatta ttctcgcgct gtgatgaaaa 300 tgctcgtatt ttagagcgca cacagcttgg tatagcatta ttttactata aatagaaaca 360 tttttaggtg gacaactcta ggaatgatat ttaatttggt ttagaatatg aaatttgaat 420 ttagcgctca gagcaattgt cctgacatgt tgactcattg acggctgatt gataactgat 480 tgttcttgag cccgggggtg ggaggagctt tcccttttat agcggaacct cgtgt 535 // ID DIRS-19_NV repbase; DNA; NEM; 2245 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-19_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2245 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2245 RA Kapitonov V.V. and Jurka J.; RT "DIRS-19_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 413-413 (2007). XX DR [2] (Consensus) XX SQ Sequence 2245 BP; 686 A; 486 C; 456 G; 617 T; 0 other; tttaaaatgg actcaataaa cacggcgttt gaaaagatga aaccagagtg caacatgtgc 60 tctgtcgatt taaactcagc atactactcc gatgcaatcg cacagtcaga tcaaaaatac 120 ctgagattct catggcccgg aaaactgtac cagttaacgt gcttccctaa taggctagca 180 ctctgccccc gaaaatttac aaagcttcta aagccagtat actcggctct tagaaaggga 240 cacctctctt ttgcctatat tgacgattca tattttcaag cagacaatta tgaggcatgt 300 gtgaataatg ttattgatac acttgcattt tttaggcaac ttggttttgt cataaaccta 360 tccccacaca aaggcttact tccttggttt tattttggac tccaaaagaa tgagagtatc 420 ccttactaca gagaaagctg ctaaagtaaa agaggcctgt cagcggcttc taaactgccc 480 tatgaattcc attagggcag tagctcaggt cttggggcta ttaacctcta gcttcgaatg 540 ggttttatat ggtccacttc accatagaca tgtagaaatt gacaaaaccc agaccctaaa 600 gccaattgtg gtaattttga tagacctatg gtattatcct ctgctgcaat aagagacctt 660 aattgatggg tagcctcggt tgaaacagct tacaagcctg ttaaccaggg aaaaaggcaa 720 tggtcaacat ggccacagaa gcctccaaaa aggtggggtg tgcagtagag ggtaccccta 780 cagggggctg ttggcctcct atggagacac aacaccacat aaattacctt gaaggctgtc 840 cttttagcat tacaagcttt ttcacagaag gttgcagggg aatcagttta cattttagtg 900 gagaaaacaa ctgctgtagc gtgtctgaac caaatgggga cctgtcattc aagggatatc 960 aatgagctgg ttatccatat ctgggattga tgaattaagc atgatataca tggattactt 1020 tgcctcacat ccctgcaaaa gagaacacca tcgctgactc tgaaacaacg aagggaaact 1080 gaatgggcct taaatataga aatattttag accattctaa acaagcttga ctttaagcca 1140 aatattgacc tgtttgcatc taggataaac tataaattcg aatgttatat ctcttatcaa 1200 cctgacccag gagcatttga aatcaacgcc ttccatgtta tttggtcaac gtttgacttc 1260 tatgcatttc ccccattctg gcttatccag aaggtcttga ggaaagtgga attagaccag 1320 gcaacaggcc tggttgtggt gccactctgg ccaacccagc catggtggcc attgctcact 1380 agcatactaa ttgcaccacc ttttgtgatc ccaggaaaaa aaaagcacat tattcctaac 1440 atcgagtcca gagcagattc atctgttgca caagaaactg aaacttctag cattccactt 1500 gtctggggac ttctcgaaga tcaaggcctt tcagcttcag ttaccagcgt catccttcaa 1560 ggctggagat ctggcacaac aaagcaatat tcctcatata tcagaagatg ggagctgtgc 1620 tggaatcaac ggaagattga tccagttttt aagcgactgt cactcatgga ttaaattccc 1680 ttggtgagcg ctaccaatca cagttggaat acagtgcaca aaaaacggca agatctgccc 1740 tcgcaacagt catttcccat cagaaggtgg cacatttgag aacaacgcct tggtatgcaa 1800 atttatgaag gttatatata tcatacgacc tactcttcca agatacaaag aaatatggga 1860 tgtgtcaata gtattcaatt atctaaaaac ccttcatccg ccagagagtc tatccctcgt 1920 ggacttaact atgatcgtgg acttaactat gacaacggtg atgcttatcg cactactgtc 1980 tggacagcga tgtcagacaa tacatgcact tgacactgct gcagtgtctg tgaccgatga 2040 caagtgtgtc ttttatatac aagaactgtt gaaaacgtca aggccaagta agcatcttgg 2100 gaaactagag ttacaagctt attttgataa acagttatgt gttgttagtc ttcttaagga 2160 gtatttagaa cgaacaagat ctctacgaac aagttcgcgt ttgtttatta gttatcagaa 2220 gcctcacaat aaagtgtcca cagag 2245 // ID DNA-1_NV repbase; DNA; NEM; 1749 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1749 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1749 RA Kapitonov V. and Jurka J.; RT "DNA-1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 385-385 (2008). XX DR [2] (Consensus) XX CC TTAA or TA target site duplications. XX SQ Sequence 1749 BP; 551 A; 314 C; 327 G; 557 T; 0 other; ttaaggagat tcgatacagt ttcccgaatg cccaaccatc ctgtcaatca caactcgtat 60 cttctgctac agggatcgga tcatcaaact atttggccat gccatgtagc tagggatgaa 120 ctttataaaa atgtaacatg tgtttacatt gctgtttcta tggcaacgga acggtgaacc 180 cgttaaattc actattcgcg aagtgctgtt cgctacaggg aaatttttaa caaataagct 240 ataggatatt gtacatcaga ccttggtcga cacttagagg aagttttatt aaaatctata 300 agaggaattc tgagatattg tcgtattttt attttcagtc actctgttat ttacctactt 360 tgaaattcgc ccctgaaaaa aatccatacg cgggcaagga ttttttttac cattgttatt 420 tagctacctc ttatttctaa tagcctacca aaaatgaaag caatcggttt tgttgatcgt 480 aagttttagg ggccattcct gggactattt aatactttca aaatgaagaa attgaacttt 540 tttgattttt tagccgccat gtaaaatttc gccgattaat tttttcgtcg ttttcgtata 600 ataaaattaa gatattgaga aacattcggg ttaactttga gcttcattga agggttgaaa 660 gtaagcgatt agattttttg aaaatgggca tttcaagcgc cgactttgcg ctggctcttt 720 gttaaacaaa ttgcttcgtc tcatgtattg ttgatttcat gacttgttgt tttcacattc 780 ttcacgtgct aatcttccac ggctggctgc ttctgaactt ctgaatggtc atttatcaaa 840 tctttttctt ctttacgtga atagttaaag atatttccgt ttaaaatatg ctgtgaataa 900 tactagagga aaaaagagga aggcaggtta cgctagctgc gtaaggaagg gacgtctctg 960 tgcaagatta gcacgggaag aatgcgaaaa gtacaacgaa atgaaacgaa caatattcaa 1020 agcgaagcta caaaacaagc gcaaagtcgg cgcttgaaat gcccattttc aaaaaatcta 1080 atcgcttact tacaaccctt caacggagct caaagttaac ccgaatgttt ctcaatatat 1140 taattttatt ctacaaaaac gacgaaaaaa ttaatcggcg aaattttatt tggcggccaa 1200 aaaagcaaaa aagttcaatt tcttcatttt gaaagtatca tatagtcccc agaatggccc 1260 ctaaaactta cgatcaacaa aaccgattgc tttcattttt ggtatgttat tagaaataag 1320 aggtagctaa ataacaatgg taaaaaaatc cttgcccgcg tatggatttt tttcaggtgc 1380 gaatttcaga gtaggtaaat aacagagtga ctgaaaataa aaatacgcca atttctcgga 1440 attcctctta tagattttaa taaaacttcc tctaagtgtc gaccaaggtc tgatgtacaa 1500 tatccgatag cttatttgtt gaaaaatttc cctgtagcga acagcacttc gcgaatagtg 1560 aatttaacgg gttcgccgtt ccgttgccat agaaacagca atgtaaacac atgttacatt 1620 tttataaagt tcatccctag gtacatggca tggccaaata gtttgatgat ccgatccctg 1680 tagcagaaga tacgagttgt gattgacagg atggttgggc attcgggaaa ctgtatcgaa 1740 tctccttaa 1749 // ID Ginger2-2_NV repbase; DNA; NEM; 2842 BP. XX AC . XX DT 03-FEB-2010 (Rel. 15.01, Created) DT 03-FEB-2010 (Rel. 15.01, Last updated, Version 1) XX DE Ginger2 DNA transposon from Nematostella vectensis. XX KW Ginger2/TDD; DNA transposon; Transposable Element; Ginger; KW Ginger2; integrase; Ginger2-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2842 RA Bao W., Kapitonov V.V. and Jurka J.; RT "Ginger DNA transposons in eukaryotes and their evolutionary RT relationships with long terminal repeat retrotransposons."; RL Mobile DNA 1, 3-3 (2010). XX DR [1] (Consensus) XX CC TIR is 93-bp long. XX FH Key Location/Qualifiers FT CDS 560..2143 FT /product="Ginger2-2_NV_1p" FT /translation="MAASVCVDADDFYSKLEELKEKSKSSKSNTTLYICDE FT FYEKAKQWLKCTTPEEKKDIALSDNDKLKIIRNKWNVDEEGRVIDAKGKYV FT VHKSTIHDVLSQAHKAICHRGRDKTAKYLSENYSNLPKQIITLFTSICKLH FT QEQASLTNYCKKPVTKPIQADGFLSHLEMDLIDFRKIPCNCGRRHLWALHV FT EDHFSKYSWLLPLKKKESLEVAQTIEPLFWQFGFPCKLHTDRGGEFKGSVD FT DFCAKFNIPQARGAPRNPSAQGLVERANRLVKENLLSLIKEKGLASNDWCK FT ILNEAAYKKNITLHRAIGKSPYEVVFGIFPHKEKALTPTREITGILSTVQE FT EGNNDDKVESVSNTEEEELATVETRAQKRKRKSETVPERAATSKTTTMTVS FT TIESHDQNVEEDESGIIIETRAQKRKRENDQVFENQAGYNRKMKETRPRKL FT NFQENDYVSVKINVVDKGPLHPNSLLAKIIEKANDNARIVTKFGVIDSLIS FT LNRLNKIAKPNIVFDYSTEVSLTRASKMAHLQ" XX SQ Sequence 2842 BP; 957 A; 685 C; 475 G; 725 T; 0 other; tgttgtagtc gaaaatgaat gttagtccaa aataaaaatg gactagtcca aaatgaaacc 60 aaaccagtcc aaaatgaaat tggactagtc taaaataata tggttgaata tgtcaatgat 120 tctaaaaagg gattttccct ttttggggtc tcattaaaaa aaaatggggc taggtatttt 180 tcgggggtca aaaagtctta ttccattttg tttctactcg ctcctttcca ctatctctcg 240 tccctttcct cctttctccc attcctttcc ttttcactct cattcctttc ctgctttttc 300 cttttcctct attccttacc tacctgcctg cctactgtta taaattctat cttacctttt 360 tttccagtat gtgccaccac taggatcgaa ctctcgatct ctagcttgcc agtccgttac 420 cttaaccact ctgccatcca gacattgcga tggaagacac ggtttagaaa ctaattttat 480 aactgtggcg cctcttggga aatgaacaac aatacaaaac tccacgcaag cgcagtcacc 540 aaagcgtgtt tagttagcaa tggctgctag cgtctgtgtc gatgcagacg atttctactc 600 gaaattagaa gaattaaagg aaaaaagtaa gtctagcaaa agcaacacaa cattatacat 660 ctgtgacgaa ttttacgaga aggccaagca atggctgaaa tgtacgacgc cagaagagaa 720 gaaagacatc gcactgtcgg acaatgataa gttgaaaatc attcgcaata agtggaacgt 780 tgacgaggaa ggaagagtca ttgatgccaa gggaaagtac gttgtacata aatcgaccat 840 ccacgatgtc ctctcgcaag ctcacaaagc aatctgccac cgagggaggg ataaaactgc 900 caagtatctc agtgagaatt atagtaacct acctaaacaa atcataacat tatttacctc 960 catatgcaaa ttgcatcaag aacaagccag cctcaccaac tattgcaaga agccggtgac 1020 aaaacctatt caggcagatg gatttttgag ccacctggaa atggatttaa ttgattttcg 1080 taagataccc tgcaattgtg gacggaggca tttatgggct cttcatgttg aagatcattt 1140 ttccaagtac tcatggctac ttccactgaa aaagaaggaa agtcttgaag tcgcccaaac 1200 catcgagccc ttgttttggc agttcgggtt tccatgcaaa ttgcacacag acaggggagg 1260 agagtttaaa gggagcgttg atgacttctg cgcaaagttc aacataccac aagcccgagg 1320 cgctccaaga aacccttctg ctcagggact tgtcgagagg gcaaaccgac tagtaaagga 1380 gaatttgttg agcctcatta aagagaaggg attagcatca aatgattggt gcaaaattct 1440 gaatgaggcg gcctacaaaa aaaatatcac tcttcatcga gcaattggca aatcgcccta 1500 cgaagttgtt tttggcatct tcccccataa agagaaggca ttgaccccaa cgagggaaat 1560 aaccggtatc ctaagcaccg ttcaagaaga aggaaacaac gatgataaag tcgaatccgt 1620 gagtaataca gaagaagaag agctggccac tgttgagaca agagcccaaa aacgaaaaag 1680 aaagagcgag acagtccctg aaagggcagc gacatcaaaa acaactacca tgacagtcag 1740 caccatagaa agccatgatc aaaatgtgga agaagatgaa agtggaatca tcattgagac 1800 aagagcacaa aagcgaaaac gtgaaaatga ccaagtgttt gaaaaccagg caggttataa 1860 tcggaaaatg aaggaaacac gaccaagaaa gctaaacttt caagaaaatg attatgtttc 1920 tgtaaagatc aatgtagtcg ataaaggtcc gctacatcca aactcccttc ttgctaagat 1980 aatagagaaa gcaaatgaca atgcaagaat tgtcactaaa tttggtgtga ttgattcatt 2040 aatttccctg aatagattga acaaaattgc caagcccaac atagtctttg actattccac 2100 agaggtctcc cttacgagag cgtcaaagat ggcgcacctt caatgaccca catgactgta 2160 atggctgtat gaatgagtag aacgacagta ccacttatta ttagattcct gtattcacaa 2220 cgattaaagc tgctgtcatc aaattgtgtt tgttttcgtc gcctttgtta gtcgctagtt 2280 ctattttttt tacttaaaat aaccctaacc ccactactta aactaaccct aaccctacta 2340 tttaaactaa ccctaacccc actacttaaa ctaaccctaa ccccactact taaactaacc 2400 ctaaccccac tacttaaact aaccctaacc ccactactta aactaaccct aaccccacta 2460 cttaaactaa ccctaacccc actacttaaa ctaaccctaa ccccactact taaactaacc 2520 ctaaccccac tacttaaact aaccctaacc ccactactta aactaaccct aaccccacta 2580 cttaaactaa ccctaacccc actacttaaa ctaaccctaa ccctactact taaactaacc 2640 ctaaccccac tacttaaact aaccctaacc ccactactta aactaaccct aaccccacta 2700 cttaaactaa ccctaacccc actacttaaa ctaaccctaa ccccactact taaactagtt 2760 aaaaacgaat atggactggt ttggtttcat ttttgactag tccattttca ttttggactg 2820 acattcatta ttgactgcaa ca 2842 // ID Helitron-N8_NV repbase; DNA; NEM; 2194 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N8_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N8_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2194 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2194 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N8_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 604-604 (2007). XX DR [2] (Consensus) XX SQ Sequence 2194 BP; 712 A; 376 C; 369 G; 736 T; 1 other; tagcggagcc agcgcggccg taggccgcgc gcggagcccc ataggtatag aaaaatggta 60 tataactatg cgactgagtt tttttggtca tcgcgcggga gccctgtggt tctgcctcgc 120 ctgccctgcc tgcctgcccg cctgcctgcc cgcgcaagct atgtaaccac gcttcgctga 180 cacggtcgcc tccactcgag aaaaacacaa acttccaaac atctaagaag tgggaaaaca 240 atttgagaaa ctctattaca gtcatggatt gcttaaatca aagaatctac aattttctct 300 gagtccgctg tcgaatttcg cctccaacaa actggttatc acacggcgga agatcgatta 360 cactaccgat tcacaacata gcgatgaaag aaagtctacg aaagaaagtc tttacaaaaa 420 gcctaaaata taagaaagga cccatgtcta aagacgaaga aatcgaagac aataaagcag 480 caaaagtatg attattaatg ttggtttctc gccgacttga aacgaatgaa acggtacgtt 540 ttcaaatcgt aacttataca attttatcgc ttctttctta cttattcgtt gatgttcagt 600 ttagtctaaa tttaaactgt agttttcctt taccgtaact atatattttg tatattttta 660 tttataatca tggtgtacta aaaaatctct aaaatgcgaa ttgttcaaac aaaaccgctt 720 ctgctatttc tgtccaaatt ataatttctc gtgtcaatct tattctatag ctttccaagc 780 taaacgagta aacgaatgta tgttatctct catattttct ctgctttgat ttttgtttgg 840 taagaacaat aaaggttaga tttgtaaatt ctttcttttt gagtggaaaa atatacttat 900 attttttagt ttattttacc ttaacaacta gtttgcacta atcctagaag gtccttacaa 960 attttaacta aaactagaca taaggtcctt acaaatttta attaaaacta gacataaata 1020 ataaataaat aatcaaacaa acaaagttaa aggaaaaatt taaattaaag ccgcttaagg 1080 tgtggtggta cccttatata ggaaaagctt ctgtagctgc tgccttgaag gctggcagag 1140 agctaggtta gaggttccat aatctgactg ctctgggaaa gaaagaataa gactcttaaa 1200 gctcttaata ccggactgaa cttggcggta cataaaattc actgaacttg gcagtacata 1260 aaattaactg aacttggcat caaacctaac aaaaagatgc gcaacctcta ctaatgctgc 1320 tgtgtctttg gcaaatagct ytcgataaaa gcactggata agcagtttta gttattatta 1380 aaccacccct gtaaggcagc cacttttcca acagattact ggagtgtttg ttgtttttag 1440 tggccataaa attaaatgat tgtcttaaaa taagtctatg atagatatta aaggggacaa 1500 taacaaattc agaggtagtc tatagtactt ttattgcttt tcttgtgaac cacagttaag 1560 tggccaaccc ctatcaaaaa gctactcagc acagtcccaa agaggtgatt gcagaggcac 1620 cactatactt cccttgtatc tgaactgtat tatccctgtt attgttcctg gccattgaat 1680 tagattagtc ctgacaccat tgtgtgaagg ctatacaatt gttatttgaa atttttttct 1740 tctcatcatg tttgtatttt ttttatttcc tttttgctgt tattgtttat aggtggtgga 1800 aatatagaaa taaataatat agaaatggat aaagatatat aaaaaagtga tgactttaga 1860 ttctaatatt caaactaaaa tggaactaaa gcaggacagc atttacagaa aacgtttgga 1920 gtggaggttt ttattgttca tttatttatg ttaattatta tatatttatg tttatttttt 1980 tatgctaatt atagtaatcc tctatatttg gacaaaataa acaagtacct tttttcttat 2040 tctgatcttt attatggtta tgattatgat tatttataaa atgtattatt attattatta 2100 ttttgttatt gttataatta taaaaactat gaaaaatatt tggaatacaa atgcgctggc 2160 tccgccttta ggcaatgcct aaatctatat atta 2194 // ID Penelope-11_NV repbase; DNA; NEM; 541 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Penelope-11_NV non-LTR retrotransposon - consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; Rex1; KW NVREP157; Penelope-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-541 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-541 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-541 RA Kapitonov V. and Jurka J.; RT "A family of Penelope-11_NV non-LTR retrotransposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [3] (Consensus) XX CC It is 3'-terminal part of the Penelope retrotransposon. The CC consensus was reported originally as the unclassified NVREP157 CC transposable element [1,2]. XX SQ Sequence 541 BP; 157 A; 125 C; 119 G; 136 T; 4 other; atccagtagt aggaaccgac ccttgcggca gacaagattg ccaacatgtc catttgtaaa 60 ccgcacaatt cagctcgaac ggcttagatt actgcatttc gtgcaaaaaa tgtatcacta 120 aagtatactt cggcgagact gggcgcagtc tagggggtaa ttttagaagc cataggatgg 180 ttttgatcaa caacacggcc gaamtaccag taccrgctca cttcctcaat caaatgaatc 240 atactgtcaa tgatatgaag gtggcggtgc tggtagccgg ccttatggac actgataccc 300 gtaaacgagc ggagtccaag cttatcatca aacacaacac cctggcgccg agcggcctwa 360 atttagatgt gggactgccc atgrtttgaa cgcacgcgga gacatccccg tgcgcgcact 420 ggaactttta tttgtttagt ttttgctcgt cataatttac cgttaatcct gatgaaggca 480 gcattgccga aacgtcgaaa aaatacaacc cagtgattca agaatatttt atatatatat 540 a 541 // ID piggyBac-N1_NV repbase; DNA; NEM; 1192 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-N1_NV non-autonomous DNA transposon DE - consensus. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; piggyBac-N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1192 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1192 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-N1_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 643-643 (2007). XX DR [2] (Consensus) XX SQ Sequence 1192 BP; 397 A; 206 C; 211 G; 377 T; 1 other; ccctattcag acgggtgggg ggggggggct tttgaggccc ccagcacctt tgatctgtaa 60 taatttttga actagtaggg ctagagcatt gaaatttgat gacttttcct aaaatttatc 120 tgggatcagt ttggtgtaaa caaaattttg atatgtgtac cctggtaacc atagyaacca 180 agttttgaga cataggttta atgaaaatta ggcaaaacgc tttaagtcgt taagatcaac 240 tattaatacg acgtgctcaa cgtaaatcca tttcatataa acgttttata ccaagttttg 300 aaaaaacttg tggtgttatt tttgccctct cgaaatagtg cttgtagaaa tagcaaaaac 360 attcatatcc acctgaaatc attaatacaa cttgaaacga agattaaata ttgtcaaaaa 420 gcttcagatt ttgccaccca gttttttaaa ataaataact ttcattaaat ccaagatggc 480 ggatccaaga tggcggatgc tgatgtcaca taattagcta gaattcgctg tttttttttt 540 taaactaaca tctaaatttg gcaaaatcct ttttatattc ctctatttta aataaaaagt 600 agaaaaaaac atttttggga aagatattta aattattact ttaattaaga gtccagttgc 660 aaacttatgc tatattaaag gtaccatgcc aatcaatgac gtcacaggtg tcatatattg 720 ttgtcataga aacagtgtca ctaataatat atgtctactg caagataata agattatcga 780 aaaaagacat acagaaatac acatctaaaa aaaacagaaa tattgcccgt ttctgctcac 840 ttaagtgacg tcatcgtgac gtcacaaaga caattttttt gaagaatatc ggtcgctttt 900 tgaatacgaa ctgattatga taacttattt ggattttgga tgttctatgc aaaggtttcg 960 aaagataggc tatttataac catatgtcct taaatgacgt cataatgacg tcatattgtg 1020 ttgctatggc aacacaatat atcattttgt tcctctttgt cagataatga ttctttgaaa 1080 atttggtcat aatagctcca atggttcaaa agttacggat ggggggccga aagagccccc 1140 cccccccccc ccccggtcag aggaagcccc aaaaagcccg gtctgaatag gg 1192 // ID Harbinger-N17_NV repbase; DNA; NEM; 181 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP273; Harbinger-N17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-181 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 175-175 (2007). XX DR [1] (Consensus) XX CC Harbinger-N17_NV is a consensus sequence of a very old family of CC non-autonomous Harbinger transposons. The Harbinger-N17_NV CC transposon is characterized by 25-bp TIRs and 3-bp target site CC duplications (the TSD size and classification are not very well CC established). XX SQ Sequence 181 BP; 44 A; 58 C; 47 G; 32 T; 0 other; agcccgtgca aacagcgcca acatcagcca gcattgctgg caccgctacg ctcggttgac 60 cacaagacaa aggaaatgtt ggcgaactac ttcacagcac ctcccaacat ggtgttcaaa 120 cagcgccagc attgctgggc cagcgtctcg ccagcaatgc tggcgctgtt tgcacggggc 180 t 181 // ID DNA-9-19_NV repbase; DNA; NEM; 1073 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-19_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP15; DNA-9-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1073 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1073 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1073 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-18_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC originally, was reproted as the NVREP15 unclassified DNA CC transposon [1,2]. XX SQ Sequence 1073 BP; 335 A; 195 C; 197 G; 346 T; 0 other; cgcagtggct atatgcccga cagtcgggaa aggtcctcaa tggactaaat gcccgacagt 60 tttcaatttt tttcaaacaa cccagtaaat tgtcgaccta gtgagttcga agtattctat 120 atttgttgag aaagggcaag caaacctgaa ttgagctttg ttgtcggtat tggatgtttt 180 ccgtcgtcta tgtacactat agaatcgtaa ttttagtggc acttagaatt ttcttcaaca 240 tgctgctaaa atgtcgacag ttctcaattt acgaaaatat cacagtaaat tgtcgaccta 300 gtgagttcaa agtattgtat atttgttgag aaagggcaag cgaatctgaa ttgagctttg 360 ttgtcggaat tgaacgtttt tccttgcttg tatacactat aaaatcgtta tcaaagtgac 420 actgaatttt atctcctaca actgtcggga caggtcttca atggactaaa tgcccgacag 480 tttccaattt attcaaataa gccagtaaat tgtcagccta gtgagttcaa agtatcctat 540 atttgtttag aaagggcaag cgattctgaa ttgagctttg ttgtcggaat tgaatgtttt 600 tccttgcttg tatacaccat aaaatcgcta ttttagtgac acttgttttt tctgctacaa 660 taacatcggg aaaggtgttt tatagtgtac aagcaagaaa aaaactttaa ttttcgacaa 720 caaagctcaa ttcagattcg cttgcccttt ctaaacaaat ataaatactt tgaactcaca 780 aggttgacaa tttaccgtga tattttagca aattgagaac tgtcgacatt tagcagcata 840 ttgtagaaaa tcagtgccac taaaattacg attttatagt gtacatagac aacagaaaac 900 attcaatacc aacaacaaag ctcaattcag attgcttgcc ctttctcaac aaatatagaa 960 tactttgaac tcactaggtc gacaatttac tgggttattt gaataaattg aaaactgtcg 1020 ggcatttagt ccattgagga cctttcccga ctgtcgggca tatagccact gcg 1073 // ID TE-17_NV repbase; DNA; NEM; 1611 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-17_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP106; TE-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 777-1611 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 777-1611 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1611 RA Kapitonov V. and Jurka J.; RT "A family of TE-17_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 1611 BP; 474 A; 451 C; 207 G; 475 T; 4 other; agattaccac caatcatcat caggcagmag gttatgttag tctactatct aaatacatca 60 tctaccgttt ttcttattat aagccttatt ccmagtcttc attacactca agcaaaagta 120 cacggttatc aagaataaat acgtttctct cgtccacaat aggwgtaacc cttacttcaa 180 catgccacat aaaaacwtca cctttttact gtcttatgca acaaagttcg ttttctgcca 240 aacaaatcta cagtgtagca gataaacacc atgggattcc agcagaacca aaacacgacc 300 accatccaag ggagataagc aaacgtcgat ccttcagtat tgtcctcgca tttcattcca 360 ttcaagaaac tctgcaagca actccacgcc acatgcacct gcaaatccgc catcttcttt 420 caccatacat accacgtgat gtttccggaa ataatccaac cggaaataaa atagcgcacg 480 cgttcaaaac gagcacgagc tttgcaaacc gttgtaaact gttatcacgt acactctcca 540 ctttttcaaa aaccacttaa ctgtaaacca cgcttacaac aaggtaagaa ataatgtttt 600 ccaaataatt tcatcctttt ttaacttcga taactatttt attagcgccc gaatacattt 660 gtactttaca acataacaag tacttacaat tcttaagtgc cattcaataa tttcatcgat 720 ttatttgcac gtttgtcagc catgctcact acaaacttat ctcacatata tttttggctt 780 ccaatagcac catccagcta tataagaaat cctaccaggc tcaagatagc ttaaaagtct 840 tagaagccaa ggccaagaaa ttaaatttag taatcagcta gcaagctaag aaggtagaga 900 aaatccacga tgtccatggc caacaaagga aggtttgatt tgaacacacc acaccatcca 960 cttccctaaa gcagccttac gttgacgtgt aggggtaagg tgaattggct agccactcat 1020 tcactttgaa acacgtctca aatgcgaact ttttccttac taggtatctc catctttcct 1080 cctcccccta gcatcccccg gctcccagtt tccattctcc ccgtcgcatt tgactagtac 1140 ttggtcttac ctcctgatga taaaccctgt actagaaaac acgtgaggct gcttaacctt 1200 tcaaagagct ctatgaaata ttctattcct tatttaccgc aatttattat acatttatgt 1260 gcatgtttat gaacttttgt tgttttcatt atattttaac tcacttcttt ctccaccagc 1320 gtgtacacct taccccttat cagccttttt gttttccggt ctatacctcc ctacccacta 1380 cctcctcctt aatcttccca ttcaccctat acgccatggt aagaacaatt gcatcactat 1440 cccgtacact ccttatagtc caactccact caacgtagca ttatccccac aatgaccctc 1500 ccgccctcac ccctgccacc tacctctacc cgtatcacaa ccattattcc ccttttatgt 1560 cccccttctc cccaggtgcc atggtacgaa tacccgcttt taaccaaaaa c 1611 // ID Penelope-2_NV repbase; DNA; NEM; 2602 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone Penelope-2_NV autonomous Non-LTR DE Retrotransposon - incomplete consensus. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-2_NV. XX NM Penelope-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2602 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2602 RA Kapitonov V.V. and Jurka J.; RT "Penelope-2_NV - a family of autonomous Non-LTR Retrotransposons RT from the starlet sea anemone genome."; RL Repbase Reports 7(7), 632-632 (2007). XX DR [2] (Consensus) XX CC 5' terminal portion is not present. XX SQ Sequence 2602 BP; 957 A; 495 C; 506 G; 644 T; 0 other; gtacttagca tattcactgt gatatgcaac caaattattt gaaggaattc aactcaatcc 60 aggatggccc taacatgatc aaacttgggc aaaattaaat atgcaaaaat tatcagtcga 120 tgcaatattc catttaccaa tgttctattt gtaaagatgc ttggcctttg aacataaaaa 180 agcaatcaga ggattgtact tgcacacgct gtaagaggga tacggaaact cccaaatcat 240 tttctaaaga aaattctgtg atacctgggc aagtcccaaa agagttacaa ggattaactc 300 aggttgaaga aattgttttg gtaacgttgc tattaagaag ctgtttgtaa ctctctgttt 360 ccaatttgta gaaatttgct gacttatctg ccaaaacgta taagatcgca agcgagaata 420 aactcaaaaa gatcgacgca gatacgaaga ggataaccac taaactagac atacaagata 480 gagtagaagc acaagccaca aaagaagcat tcatcacctt gaaagaccat aaacagaatt 540 tcgaaaatag accaacatgc cggctaatta acccttcaaa atcagagatt ggaaaaatta 600 gtaaacaaat actcgagaat atcaacaaga ggctagtaac gaaaaccaag gtgaaccaat 660 ggaaaaacac gtcatctgtt ctagaatggt acagacagct accaagtaag gagaattcag 720 cctttatatg cttcgatgta gtggagtttt atccatctat caccgagacc ctactagaac 780 gagcactgga atttgcatca gagcatgtga acatcacgac cgacgagggc gatttcatta 840 caaaagacaa gcactcgctc ctatttagca acggcgtacc atgggagaag aaatcatctt 900 ccacattatt cgatgtgaca atggggagct tcgatggagc ggagacatgc gaattggtcg 960 gatgcttctt actacaccag ctaaagcaga ttccagaaat caacattggt ctttatagag 1020 atgacgggct ggcaattatg tcgcaagcac ctagaagcat agaaatggca aaaaaaagaa 1080 tatgcaagat atttgctgac aacgggttaa gaatcaccat tgaagcaaat aagatagtga 1140 tctttcttga cgtaacatta gttctcaaca caggtaaatt tagaccatac tccaagccag 1200 cgaatatacc acaatacgtg cacagcaagt ccaaccaccc tccaaatata atcagaaaca 1260 taccagattc aataaataga agactgtcag aaatatctta tgacgaggaa acctttaaca 1320 acgccgcacc ccaataccaa aacgcgctga ggaaaagcgg ctataactac ctgctcaagt 1380 tccagccaag agcacatagg cctgatgcgc aacgacgcaa tagacaaagg aacattatct 1440 ggtataatcc accttttaac aaaaacgtaa gcacaaatat aggcagagaa ttccttaagt 1500 tagttgataa gtcttttccc gctagcagca cccttaagaa aatcttcaac aggaacacgc 1560 ttaagattag ctatagctgt atgccaaatg taaaacaatt aatcgatggg cacaataaga 1620 tcattttgaa tagaagggac aacgagcagg tggaggacga taggaaatgt aattgtagga 1680 aaagggaaga ctgtccttta aacggggaat gccttgaaaa agagatagtt taccaagcta 1740 gagtagagac aggggacaaa tgcgaaacgt atgtaggtct aacagcaaac gagtttaaga 1800 caagatggag aaatcacgct tcttcattta gaattgaaag taggagaaac gagacggaat 1860 tgagtaagca catatggcag ttaaaagata ggagaatcaa ttacacagta agttggaaga 1920 taatagctag agcaaaggca tactctaagg aaagtaagag atgtaattta tgcactacag 1980 agaaacattt tataattatg aagccagaga tggcaacact taacaagcga aacgagctgg 2040 tttccacatg taggcatcga cgcaaattca ttctaaagtt cggtaattat taggcgattt 2100 aaacggcacg cgcataaagc gcgcgcaccg tttgtaacgg cttttcaatt catgcacatt 2160 ttacgtagat aaacattgat gtcattgaat gttagtttaa ctgaggagtg gactaacggc 2220 aacgttggtc tacgaaacaa gtttgtatta gtcataaaca aaagtctgtt ttgaaaataa 2280 gcgcatttgg aaaataccac agtttagtct ttatgtacag aaagttaact atagactata 2340 attttcccat atcccccctc cccctacaga agtaagttta ctttcggttc tccaaacgca 2400 ggaaaaaaag ttttgcagca tattttcttg taacgtttta atggcaaaaa caacttggaa 2460 tttgcacatc tccatagaca cttcactaaa acgaatgaat gaatgaccag aatatacata 2520 tatactgcac ttgctcgagc actccacttc tcaatgagaa cttctagttt tattaatata 2580 ctattatttt gaaacaagtt ta 2602 // ID DNA-AT-1_NV repbase; DNA; NEM; 264 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-AT-1_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; AT TSD; KW AATT target site; DNA-AT-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-264 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-264 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-264 RA Kapitonov V. and Jurka J.; RT "A family of DNA-AT-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Contains imperfect 106-bp TIRs. Copies are 95-98% identical to CC the consensus sequence. They are inserted specifically into the CC AATT target sites. Given the target site and transpson consensus CC sequences, there are two alternatives: (1) this transposon has CC the 5'-AG and CT-3' termini and it has generated the AT target CC site duplications during its insertions into the AATT target CC sites; (2) the transposon has the 5'-TAG and CTA-3' termini. when CC its target-site specific transposition into the AATT are not CC accompanied by any target site duplications. We chose the first CC alternative as the most parsimonian one. According to it, we CC expect that the corresponding autonomous transposon involved in CC transpositions of DNA-AT-1_NV is a standard "cut-and-paste" DNA CC transposon, probably from the Mariner superfamily, characterized CC by the AATT target site specificity. However, it still possible, CC that the autonomous transposon belongs to a novel type of DNA CC transposons, which have TIRs but do not generate TSDs. XX SQ Sequence 264 BP; 65 A; 55 C; 65 G; 79 T; 0 other; agtccagttt cgagttccgc tgtgcctgct ggtcataggc acagaggacg cataaataca 60 gtgcaagcct cggtttcaat tgaatcgatt gcaaatacca gcgggatcat gaagtattca 120 caggtttttg cattgtttta ttccaagttc cagaggattc tcgctggtat gcgcatgaaa 180 tttgcctcaa gtcgaggctt acactgtatt tatgcgtcct tagtctgtaa gtccagcggt 240 catagtggaa ctagaaattg ggct 264 // ID DNA-9-1_NV repbase; DNA; NEM; 132 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-132 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-132 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-132 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 132 BP; 27 A; 39 C; 39 G; 26 T; 1 other; taccctgggt accagagcct ccagacttct ctcgtccagt gacgctcagc caaaatgccg 60 cgacgagcgt cgcracattt tggctgagcg tcactgggcg agagaagtct ggaggctctg 120 gtacccaggg ta 132 // ID Harbinger-N16_NV repbase; DNA; NEM; 256 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP244; Harbinger-N16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-256 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 174-174 (2007). XX DR [1] (Consensus) XX CC Harbinger-N16_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N16_NV CC transposon is characterized by 32-bp TIRs and TWA target site CC duplications. XX SQ Sequence 256 BP; 54 A; 77 C; 43 G; 82 T; 0 other; gggagtgttc attaattaca ccgagggggg ggagggaaga tttttactca agacacctta 60 aaatttcaga gccccccttt cattgtaaac atttttttcg gtgccccccc ccccttatag 120 aaccccaaaa ttttctttct ttttccctta gaggaccttt tttttcggag cccccccttt 180 tggtggttaa aaattttcgg agccccccct caatatcttc cctccccccc cctcggtgta 240 tttaatgaac actccc 256 // ID Gypsy-1-I_NV repbase; DNA; NEM; 3450 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-1_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1-I_NV; KW Gypsy-1-LTR_NV; Gypsy-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3450 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3450 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-1_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 469-469 (2007). XX DR [2] (Consensus) XX SQ Sequence 3450 BP; 812 A; 1098 C; 812 G; 678 T; 50 other; tgaggaaatc attatcatgg tgatcgtcga atgttcggta cccaactgtg acttcaaaac 60 acaggatgtc tctgatgcaa tcgccgtagc gttactaaat aaccacggcc tcgcacatca 120 agcactacct cccgctcctt ctgccccacc gccggcccga ggcccgaaac tcgaccgacc 180 caaagtggac atagggatct ctatcgagga atggaacata ttcatgcgcc gatggggggt 240 tttccgttct ggatctggca tcactgacgc ccaggcgcct ttccaactgt tccagtgtgc 300 cggccctgac ctcggggaca gcctactgaa agccaaccca ggagccacct cgttgccctt 360 gcaagatttg accgcagcca tgcgctcgct agctgtcatt cctatcgcta catgtgtcct 420 ccgtaccgag ctgctccagt taaaacagga acgggacgaa acctttcgtg cattcgcagc 480 cagggtgcgg ggaaaagcgg aaacgtgcgc atgcacagca gcatgtgcgt gtggccaacc 540 cgttgactac accgaccaca tcatacgcga cgtcctttta aatggcattt acgactcaga 600 cataaggcgt gagactctgg gcattacaga tatcttgacc aacccaatta atgacgtcat 660 tgcctcggtg gagagtaaag agatggctcg caacgcccta ccgtcttcaa ccctgtccgc 720 gatgtcgtcc ttccagcgta acaaaaacac gccaccctca gaccagtcac caagcgcagc 780 agagaaatca cgacannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840 nnnnntatca gcctttgagc gcaaagagcg gtatgtggac gacacaatcc actatgatac 900 tgacctagaa caacactggt ggcgatccat cgacttcctt acatgcgtag gccagtccgg 960 tatagtactg aaccccgaca aatttcagtt cgccgaaaag tgtgtggact tcgccggctt 1020 tagggtgtcc gactcaacca tagagccact ccctaagtac ctggatgcca tccgtgattt 1080 ccccactcct gaatcgacga cagacatcag aagctggttc ggtctggtca accaggtggc 1140 caactacgcc caattgcgcg agaccatggc gccgtttaag ccattcctaa gcccacggtg 1200 caaattcacc tggtcacctg acctggagtc tgccttccaa gagtccaaag aagccatagt 1260 tcaggcaatc cgcgagggcg tggaaatcta cgacatgcag aggcgcacct gccttcgccc 1320 cgactggtcc cgaagaggta ttggttattt cctcctccag caacactgta gctgcccctc 1380 tggtatacct gactgctgcc caggaggatg gcggatcact ctggctggct cacgcttcct 1440 ctccccagcc gaacaacgtt acgcagccat cgagggagag gccctggccg ttgcctgggg 1500 tctcgagcaa acccggtact tcacacaggg ttgcgacaac ctggtggtag tcaccgacca 1560 caagcctcta gtcaaaatct tcggcgatcg caccctcgat gagatcacca actcccgtct 1620 gttcaggtta aagcagcgta ccctcccgtg gcgcttcacc atcacccatc gaccgggaaa 1680 aagtaaccag gcggctgacg ccacatcaag acacccatcc ccatcaggct caactaacag 1740 tctcgcaact tcaactccta gtgtaccgga catggttgag tcggctcatg gcctccatca 1800 ggaacgacgc acatgatctt ggggccatct cgtggccgat cctcgcacaa gagactgcta 1860 cggacccatg cctaggtcac ctcctacgcc tcattgaaca agatgttgtt gttgacccta 1920 acgacccggc gctttcaagt ctcggacatc tcagtgagtc gatatatgca caggatggcg 1980 ttctactact caacgaccgt gtggttgtgc ccatgtccct ccgcaaacgg gtcctccagc 2040 acttacacgc tgcacatcaa ggagcctcta ctatggagca gcaagcgcgt gccattgtct 2100 tctggccggg gatgtcacgg gacattcagg gcaccagaga cggatgcaca gattgcaacc 2160 gcaacgcccc atcttaagcg gccacaccgc ccctcccgac ctctccgcca tctaccccgt 2220 tcgaggctgt ctacgctgac ttcttcgact ttggtggccg ccactaccta gttgtcggag 2280 accggctctc tggatgggtg gaggtcctca gctccaccgc aggtactgac ctagggggct 2340 ccgctggcct ggtccgtcac ctccgagcat tcttcgccac ctttggcgtg ccaacagaga 2400 tatcaagcga tggcggacca gagttcacag caggcggcac cgagaccttt ctccgacttt 2460 gggggatcaa acaccgcctg tcttctgtcg gcttcccaca atccaacggg agagcagaag 2520 tggcagtcaa aacagctaaa cgtctcctga tgtccaatac tggtcctaac ggcagccttg 2580 ataacgatcg cttcctgcgt gccatgttac agctacgaaa cacaccggac cgggactgcg 2640 acctttcacc agcccaaatc atattcggtc gaccccttcg agactccctc atgttcgtca 2700 atcgactaga gaagttctct aatccacaca tccgacccct gtggcggcaa gcatgggcgg 2760 cgaaggaaga tgcccttcgg acccgcatat cacgtaccac cgaatcattg acgagccact 2820 ccaaaccact tcgacctctg aagctaggtg aaagggtctt catccagaac cagcagggcc 2880 cacacccgaa caaatgggac cgctcaggca tggtagtgga gtcgccaggc cacgaccaat 2940 acaggataaa ggtggatggc tcaggacggt tgaccctgcg taatcgtcgg ttccttcgtg 3000 catacacccc ggccacgccc accccagacc atcagtacag gacgccacca cctccaccca 3060 gatctccaga gtgtcaaccc acacttaaca gctcaccgtc gcctcccaca ggcagtggac 3120 cattgacggg caatcctcac gtcaccaccc aactctcaca cggtagccat ctcgtcatac 3180 ccacagagtg caaccagaca gttccacccg ctgaacccgt cgctgaaaca ccacctacca 3240 ctcaagccaa caatgaccct gtatcctctt gtatgcctga cgcctcatct caggccccgc 3300 agccactccc tgaacctaga aggccaactc gtgcgagaac acgaccaaaa cgctacgaac 3360 cagagacagg gaattggaca gtagcaggag tccgttcgtc tagccttgta tagactctag 3420 acttagtata gactcacgga ctggggggga 3450 // ID DNA-7-9_NV repbase; DNA; NEM; 382 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-9_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-382 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-382 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-382 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 382 BP; 113 A; 70 C; 74 G; 124 T; 1 other; cacaggtagc ccaggctctg tcaatgagta atttgaaccg accggctcat tgaccgttaa 60 tagagagaac atatggagtt gttactttat gcaagtattc ttccataaaa atgtaataaa 120 ttcaatccaa cttgatgtag tacttgtagt tgtctattat ttccacgttt aagcgattta 180 gagcgcattt ggggccgctt tagcgctgtt cggtgaaatt tagaattccc tctatcactc 240 ccactawaga aagaatagca ttttaaaatg gattgaattt attacatttt tatggaagaa 300 tacttgcata aagtaacaag ttctctctat taatgagccg gtcggttcaa attactcatt 360 gacagagcct gggctacctg tg 382 // ID EnSpm-1_NV repbase; DNA; NEM; 10632 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone EnSpm-1_NV autonomous DNA transposon - DE consensus. XX KW EnSpm; DNA transposon; Transposable Element; EnSpm-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-10632 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-10632 RA Kapitonov V.V. and Jurka J.; RT "EnSpm-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 449-449 (2007). XX DR [2] (Consensus) XX SQ Sequence 10632 BP; 3211 A; 1858 C; 1994 G; 3519 T; 50 other; cacaggaaaa aattccgatt ttccaatttg ggaaaaaatg gggaatattt tgggatttct 60 atgggtttct tatgggattt cccaaaattg gaaaaatgct accaaaacca atattgggaa 120 aataaaatcc caaagacatc ccaaaattgg tttattttgt ggacaagatt ttcccattgt 180 tgggatttta ttgggaccat caaatcccaa aagtggtata ttttgtggac aagattttcc 240 cattgttggg attttattgg gaccatcaaa tcccaaaaat ggtatatttt gtggacaaca 300 ttttcccatt gttgggattt tattgggacc atcaaatccc gaattggttt attttgtgga 360 caagattttc ccattgttgg gattttattg gggccatcaa atcccgaaat tggtttattt 420 tgtggacaac attttcccat tgttgggatt ttattgagac catcaaatcc cgaattggtt 480 tattttgtgg acaacatttt cccattgttg ggattttatt gggaccatca aatcccaaaa 540 gtggtttatt ttgtggacaa cattttccca ttgttgggtt tttattggga ccatcaaatc 600 ccaaaagtgg tttattttgt agacaacatt ttcccattgt tgggatttta ttgggaccat 660 aagatcccaa aattggttca ttttgtggac aacattttcc cattgttggg attttattgg 720 gagccatcaa atcccgaatt tttggacaac attatcccat ttttggaaat ttattgggac 780 cattgaaccc ccaaatggct tattttgttg acagcaatac tgtaaaaatt aaaataaaaa 840 atgaatgcaa aacaaaagaa caatgttaac atactaggaa aatttaatag aattcaannn 900 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnagt aaggttcaat 960 agtgttcttg gacctattga aaaaaagtgt tttttaaggc atcaactatt acctccctat 1020 cctttgggat acttccagat actgccttaa tgataacctt cactgcttta ctatgtaagt 1080 tatttatgac tgtaggttca gtttctggga gagtatctgt acttttcttg tcatcgtcag 1140 aaccatcatc atcagatcca tcattatcag atccttcatc atctggttcc tcatcatctt 1200 gactgccctt caatcaaagg ggtaaagaat taataaatta ttcaattttt tttttcagtt 1260 tgagtttgtg aggtttggtg tacagtgcaa cctctatctg tattctgact tattattatt 1320 taaaagctga acaagttggt aacctttttt aaggagatta acaatgacct ggacaaaaac 1380 tgaagcataa cttcttgtga ttcagccaat tttacattca actatacaga agtggcccaa 1440 ggcaagtgta tgagcccagt gggaatagat gataatgaat gcaaataaac aattagattg 1500 gagatttcct accatggaag gcattttagg tagctttgct tgggagcatt gtagtgagaa 1560 ttcctcatct gaagagccag ccttgaagaa cacaaaaaca aatttaattg caagttgctt 1620 caaagataac catcacaatt taggtactgt attgtatttt agttcttcac agtagacaaa 1680 gtagtaaata aataatcaaa taaaaaataa taataattat caaactatga agcatgttga 1740 acagtgtaca taccctagaa gaacttggtg ttctaggaga ccaggaatct ggagggcttg 1800 ttctctggag aaaataaaat cactcatatt catacctttc caaaacatca gaaccaaaag 1860 gattcctttt aaatagcaag gtttatccat aaactggcaa gaaagtcaga aagaaaaata 1920 ataattctga ttatcatgca gttcacaaca ttcctcagtg cagtgacgtg cttttattag 1980 gtcttaccat tcaaagcaac ctaaagttca gcttgcacgt caaaagcaaa ttaattaaag 2040 ccaacaaatg tctccatatt cttaggaccc ttaggaaaga acagtatagt caactagaaa 2100 tagaccattt attcttctct ctggtgttgc catgtatcac ttacggctta tccgtttacg 2160 gggcctgcga ctcagatcta acgactattc agtcattctt agataggtgt cataaacgtc 2220 ggttcgtatc aacacctgtt agcatagaaa aatagtcgcc aagcaagact gtaagctgta 2280 tgaaaaagct gcagccattc cgaaccaccc tttacgttgc tacttacccg ctattaaaga 2340 aaccaaatac aatcttcgtg gtacgcgcta tattacacca aatgtaaaaa ctgaacgctt 2400 taagaacact tatatcaaca gaattgcttt caaatatctt atgtaactta gtagctagtt 2460 tttaattttt cagcattatt tgtaacatag gagatgtatt tttatccttt gataataaag 2520 attattatta ttattattaa tacatttgca ccatacttac ttttctttca cgccgctgtt 2580 cactgaaaaa atccttagtg tgttgcataa tgccatccac tgtgaaattt atttcaggca 2640 cagaacactg gtcttcaatt tctttagcaa acttttccag ttgtgttctc atcatgggag 2700 tgttgaactt cgggagttgc ccaccccact tttccatggc aagtgcgcca atcttcttgc 2760 gcctaaacat caatcaaatt aataaggcta aatgtgttgc ataaatgaag tttactaaac 2820 aatgccagaa aaaggtgttg catgataaaa taatgtaaaa taaatgcgcc acaatatgaa 2880 ttgaacatca gcattttgaa aaaatgtata aatcaattta cttcaaagga cattcatcta 2940 tatccaatat caaaacacac tcacttagac aggtacagtc tttgtatttc aggatcgtat 3000 gttgacaact ctgccattgt tggtttgcac ttgggcaagg ctgatgaaga tttctttggc 3060 aattggaacg actcctcaaa aatccttttg aattttaggg cctttccata ggttaagcca 3120 acctttgagt aaattggcgc atcagcatct ttagatagca agtctactat tgcttctggg 3180 catgtaatat cttcatctgc agccaaacag aagaagaatg gattcaatat ttgcatgcaa 3240 aagatacatt tgaaaaaagt tttattgatc tattctgttg ttttgtcgtt tcaatttctc 3300 tgcgaaccaa agctgcgttt tatctctctg acttatttat atttttgttg ttcagcatta 3360 taaaattaac ctctacacag aaataccaca tttccagtta aaagccatgc tttctcgatg 3420 cgattttgtg aaggcctatg tcgacgggtt cctcgcgcca ttttcttgca catgtgagaa 3480 tgagaaattt cgtgcagagg ctacttttgc aaagtcgaaa aacaaagaaa gcaaaaaaaa 3540 aatatttaga gcaagcgttg taattgtgcg gcaatttgga atcccaaaga acaaattacc 3600 tttctgtggc cagaaacaat agctataata tgtttactat ccacgcggca gtttttggca 3660 agttctttta ggccgccatg tttcttcact ttctttgccg agttgaaatt tgaaattcca 3720 acctcatttt cttactttag aaagtacact taaattaaag atgatggcca aaggtaagtc 3780 agacgtcctt tatgaaagaa ttgttctgtt gctttgcaat ttcatttcga aaacgctttg 3840 agatccattc ggcattgcaa aagcgaaaat gtgcgcgcca aatttaccct actctgctga 3900 cttgagagaa acttcccctt ttagctttca ctgattcaat gaaagacttc atacctttaa 3960 atcgctgtgc aattgcatcg ccaaagtgct ctgtcacttt tgaaataaca tcttcttctt 4020 ctgagggagc tggtgatgga tccacaatat ctggctgttc ttgttgctct cgactcattt 4080 caacggcaca aactgcaaac actgagcaca ccctgtcgac agactcgtac ccagtcgatc 4140 tgagcgcgaa aatccgaagg agagcgaagt atgtgttgct ggcattttta ttctggtctt 4200 cggtgatctg attggctgtt tttcccgctt ttttgtacga tgttgttcat tggtcaaact 4260 taaatcacgt gactaaaata tcagcctaat atgggttggc tgtgtacttg attttttagc 4320 tgttctactg gtctgcggtt tcgctttcaa aagaaaaaaa tggcgggttt gtagtttccg 4380 gcgggttgaa tgttttctag ttaaaaatgt ggaaaagaag tgatgtgtct tgctgcaact 4440 gcactgagaa aaaataccgc catgttcact gcccttgtgc tacctgcaat ggtcgtgcaa 4500 ctgatcgaaa aactgaaata agacactgga aagaagcaaa tagagctgca tcgagatcat 4560 cccaacgcca atgttcgaca tcagccgccc aagattctga gtcttttgtc tttgaagttg 4620 aggacagcga tagtgaaata gaagctgata attttacaat tgaagataat ttattaccca 4680 atccagatac acctgataca gatgaaacag atacagatga ccaagatttg aatgctgata 4740 atgataatga tattgataat actaatcatg atgcgaattc ccgccattat aatcccctaa 4800 agaggcttgt tgtcgatgcc gttttgaatg cactaaaaat acagaaagaa agcggaatgt 4860 caatcaaaac atttgaagat attttggaat ttggcaaacg attattgttg gattcatcct 4920 ctgaacaggt cttttttgat agagacattt tgactacttt gtggcctaag tcgtggagtg 4980 atgtgcaagc tcttttaaaa gaggagggtt atcaagatgc tcgagaatat tttatttgct 5040 tttgttataa aactaggcca atcaattcag acactagaat aaagtacact ggcaaatata 5100 gtttaatgac cagcaaagat gaagtctgct ctaactgtgg aaataaaggt gttatagcat 5160 actattatct tggccttcaa aacaaagtta aaaactggtt tcgtgatgaa aacatgtgca 5220 acaaaatgct atctcactgg aatgaacgtg aacactggct cggagtggaa caatcatggc 5280 caatcaaaaa ggaaatgtgg gatggtgagc gctggaatga gttgcaatgg ttttgggatc 5340 ctaataagac ctgggtcatc ccatgccgtt gtgagcattg tggtattccc ataccagcaa 5400 agcatttgat tgaatcacag gatgctgtta cagctggtaa aaagcttgtg gaatgcccag 5460 aatgtctgga atcttttgaa cactctctca agacaactaa tggttctcca ataaacattg 5520 ctctcattgg tcattgggat gggtggcaag ccttcagttc cagcacacga agttgtggat 5580 ctttggaggt ctcaattgca aatatgaaga aggcagatag aagtcacacc agtgaagttt 5640 acgtagttgg atttgtccca ttgtcttcta ctccaaaact accagaaaca tatgatccat 5700 ttttgcaacc actcatggaa gacatttgtg aaggttttat caatggcttt gaagtcaggt 5760 taccacaaga gcctaacatg aaaagagtgc gtgttttgtt gctctgttgg tctggggatc 5820 atccagggca gtgtgaggtg gggaagctat taaaccaagg taaatgtgct tgccgcaggt 5880 gcaagcttgt tgggcaacat ttgccaatga atgagtcaaa taaccatatg tactatggag 5940 ataaccgaat tcattacaga cataagtggg aaagtcgtga catttctctc atgctaacag 6000 acctttatga tgttgaggca gagtcaagga tcagtgttcg aaaaagaatg tcttctgaga 6060 aaggtgtcac agggataagc cttctccata aatatttata tcctctttac aattttgaca 6120 ttctcaaaga tttaacattt gatgtgtttc atactgtgtg tcttaatgtt gtgaaaagtc 6180 aagcagagag gatcctggat catgagttag tggataagaa atcccttgac cgagaaataa 6240 agaactttcc atggccaaga gagctcaaat gtggccgact tcccaagtca atccaaagtt 6300 ataatggatc tttgggacag tggaaagctg agggcctaca aaagttttca tttccaatgg 6360 cagattgtgt tcttgatagc aagttggaat caccaaaaga gcaggaaata caacatttga 6420 tatcaagatt aacagaattg cattttaata gtggacggta tggctggaca aatagtatga 6480 ttggagcgca ccaccggttg gcatggcgct taaatatact catagaagaa actcaaggcc 6540 tggaaatgtg tacaatttct gtacataatc ttcttcacat ccatgaagac atcatcagat 6600 tctcggctac tgacaattat tggtgtgcag tgttcgaaag agccgtaaag ggttacacaa 6660 agactgctag caattgtagg ggagttgaaa agacatttgc attggcagag tcaaggaggg 6720 aattcctcaa accatactca actcaagaaa taggagagca aggaaagata aacatgaaag 6780 tggtaagttg aatgaaagaa atacatatta tggcttatgt atagttcaga atgcagctgt 6840 tgtataaaag ctaggacgaa attacagaat ataaaaagag atgcaagctt ttcaactttt 6900 atgcaaatta agtgacatca gcaaaatgta aatcaggcaa acactatctt ttcactgctt 6960 ttatgtatcc acggccttga atgaatgaac gaatgaagta atgaatgaat gattgaatga 7020 atggatgaat gaatgcatgt ctatggagcc atactcgcca ctagtatcat tctaacatag 7080 attccaatag gtaacatggc agcttggcga gaatcaaact cgtccccaga accgccattc 7140 tgagtcgcaa gaaagccaag gggagaggtt gggtgagaat aaggctcgaa tactgtacct 7200 gtaggtttat tatatgattg cagacccaga tacaattgta accctttaac cttgactcat 7260 tccatctcca tgacaacttg ttgctatgct agggcacacg ttgcttcgaa gagaacatat 7320 tttacttccg gtgcaagccg acaagagttt ttttcattca actttaggat agataatata 7380 ttcaacgtgt tatggtagtt tgtaagacat tgaagacagg cacctttaac taaaaaaaat 7440 gtcaacatca cttttactgt cattcttact tgtttttatt ttttcagggt attgcaagct 7500 ctattgagac agcaaggatg gctgttttca gaaatgatgt accatctcag tcatttcttc 7560 ttggagctat ggataacatg accctgctgg aaagggatga aaggataaaa gtagcacata 7620 ctttaaatgt tcctctccaa aaaattccac agttttcttt ctcatcaaag aaatgtttcc 7680 tcccagacaa aggctatgaa gggacagttt gttcttctgg agagtcagtg gttgtaatgc 7740 ttgaacaaaa tgaaatagtg atgaaactag ataaatttct gtctgtgaaa gacaacacag 7800 agtcttacaa actgcttgca aagggatacc tcttttgcaa tgtttacaca gacaatggcc 7860 agacagtaaa acacttttgg agtggattta cttatgtaga aagcaatcca gagagagtac 7920 cccatttctg tactgctgac aatattttaa gaaaagttat tatctatagc tcaagtgatg 7980 atacatcaaa ttctgtttca actgtagttg aataccagag gcaccaggag aaacttccat 8040 ttgacattat tgtgcccatt tatccagagc aaggagatat gttgctggtg caaggtgcag 8100 aagttggtga cgtatggtat ggatatgccc gcaatgttga ctatgcacgc agaactgtcg 8160 acgtgtattt ctttgtagag agccctagaa tgccaaacac ttttatccgt gagacgattg 8220 gacacgctgc aaaaaatgtt gttccctgga actcattgtt gggaattgca gatggattct 8280 ggcccagtcc gtcacattgg agaaaggcag tgtaaatttc taacaaagaa attgagagaa 8340 tatttgtttt cttacattgc acacacttta ttatgccatc atatggactt attacattgt 8400 actataatag cctagtatag cctgccacat atagatatac atgtaaagta acaccaatct 8460 ttcctgtcaa aatctgcaca caggttatat taattacatt gcagtgtaga atgtactata 8520 gaaccaaacc agtgcagatc cataagtggc tctttcctct ctgtgcatat gaaaatatct 8580 aagtgttagt aacactaatg tacagtaata caatcaatat aattatcaaa atactaatct 8640 gtctattttc acttttcgtc tttattttgt tgaggctaag attgccctgg cacagataaa 8700 aaactcaatt cttttgaaat agaaaacggt ccttttgtaa ttgctaacac atttcctatc 8760 cctaagcatg caaggaaaac ttttatctca ggtttaattc atgatacgga actgtgaaat 8820 ggattattac aacaacaatt taactttacc ataattgatt gactaaagtg ccggggcgct 8880 gcccttatgg tattaatttt ttggagtctc agaaggggag cttattcaag ggtcgtgctt 8940 attctttttc aattatttcc caagtatggt tttctattgg gtttttaatt aatactgtat 9000 gcaattttgg gattttcttg ttaaaatttt ccaattattt cccaagtatg gtttcctatt 9060 ggattcttaa gaactgttgc atgcaatttt gggattttct tgttaaaatt ttccaattat 9120 ttcccaagca tggtttcctt ttggattctt aagaacgctt gcatgcaatt ttgggatttt 9180 tcttattaaa attttccaat tatttcccaa gtatggtttc ctattggatt cttaagaact 9240 gttgcatgca attttgggat tttcttgtta caattttcca attatttccc aagcatggtt 9300 tccttttgga ttcttaagaa cgcttgcatg caattttggg atttttctta ttaaaatttt 9360 ccaattattt cccaagtatg gtttcctatt ggattcttaa gaactgttgc atgcaatttt 9420 gggattttct tagttcacat tttttcaatt atttcccaag tttggttttc tattgagttt 9480 ttaagaacta ttttatgtaa ttttgggatt ttcttgttaa aattttccaa ttatttccca 9540 agtatggttt cctattggat tcttaagaac tgttacatgc aattttggga ttttcttgtt 9600 aaaattttcc aattatttcc caagcatggt ttccttttgg attcttaaga actgttgcat 9660 acaattttgg gattttcttg ttaaaatttt ccaattattt cccaagtatg gtttcctatt 9720 ggattcttaa ggaatgttgc atgcaatttt gggattttct tgttaaaatt ttccaattat 9780 ttcccaagta tggtttccta ttggattctt aagaactgtt gcatgcaatt ttgggatttt 9840 cttgttaaaa ttttccaatt atttcccaag catggtttcc ttttggattc ttaagaactg 9900 ttgcatgcaa ttttgggatt ttcttgttaa aattttccaa ttatttccca agtatggttt 9960 cctattggat tcttaagaac tgttgcatgc aattttggga ttttcttgtt aaaattttcc 10020 agttatttcc caagtatggt ttcctattgg attcttaaga actgttgcat gcaattttgg 10080 gattttcttg ttaaaatttt ccagttattt cccaagtatg gcttcctatt ggattcttaa 10140 ggaatgttgc atgcaatttt gggattttct tgttaaaatt taccagttat ttcccaagta 10200 tggtttccta ttggattctg aagaactgtt gcatgcaatt ttgggatttt cttggttcac 10260 atttttcaat tatttcccaa gtttggtttt ctattgggtt tttaagaact attgtatgca 10320 attttgggat tttcttgtta aaattttcca gttatttccc aagtgtagtt tcgtattgga 10380 ttcttaagaa ctgttgcatg caattttggg atttttttgt gaaatatttc ccaataaaat 10440 cccaatcttg gattttgttg ggatttattc ccaagattgg gaataaactg ataatttatt 10500 tttttcctgg ttgcgtctct caatattttc ccaatattgg gtcctgaatt tcccaatcag 10560 atcccaaaat tgggataatt tccaaaattt tcccaaattt ccaaatttgg aaaatctgaa 10620 ttttttcctg tg 10632 // ID DNA-X-10_NV repbase; DNA; NEM; 1103 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-X-10_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP294; KW DNA-X-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1103 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1103 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1103 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC Size of targets site duplications is not clear. XX SQ Sequence 1103 BP; 310 A; 195 C; 239 G; 359 T; 0 other; ctatagagaa attcatcatc gatgagggaa ttccacggta aatttcacgc gaaaaacgat 60 atcgttttta agtgaaattt atcgtggaat acgaatcgat gatgaattat tcttgaatcc 120 tatggtcaaa ttctttttat ggttgaagag atttttatgc gctattttta gttggcgaag 180 aagccatttc gtagttgtta ttttaccagc caatgagagg cgagcagtgt ttttacatgc 240 gatctatcac gttcagaaag ttgaatccat tttgttttca gaaaaagaga caacggtttg 300 atggcggcat ctttattctc gatggtacaa ttaatagctg gatatttatc ggattgagca 360 caaacgctct agaagcaatc gcctaccaaa tctgtgagga ttggaagttc ttacctgaga 420 tgggaaaatg gacagatcaa aacagaaaag agttttcact taaaacgcgt gtccgttcaa 480 atttagagag aatcatgact tcctccggat tgatagtaaa catggaggtt gacagcaatg 540 cccattgggg agttgttgaa gtgagttcca gaaacagacc gctgctcact gcaccagcga 600 gaaaccggtt gtggtacaga ggctcaggat ttttacgctt ggtgggtagc gactctggtg 660 cttttttctg gtgttgtagg ccgtgataca ctctttgaat tcttgtattt cgtttgaaat 720 atacgtagca attgtatttt cattcatggt ttttttgtct tttctgcgcc aagagccgta 780 atgtcggtgt tttgttttgt cgccgtttgt ttcctactcg caagagtcaa aggcttggaa 840 agtttttcaa cttctggcaa attcagacta aatctcagag cgaaagtttc ttcctaaaca 900 agtccattca tccataccaa aactagtttg atgagaactt tgattttctc agctaagcta 960 agtttgaaag atatgattcg cgttgggaaa aatttcgcgg tacacctgtg ctttcattga 1020 attccacttt tcaactattg aattccacaa aaaatctcac tctgttttga ccaatgagag 1080 cgcgcgtaag aatttgacta tag 1103 // ID BEL-1-I_NV repbase; DNA; NEM; 5438 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the starlet sea anemone BEL-1-I_NV autonomous DE LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-1_NV; KW BEL-1-LTR_NV; BEL-1-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5438 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5438 RA Kapitonov V.V. and Jurka J.; RT "BEL-1_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 365-365 (2007). XX DR [2] (Consensus) XX CC BEL-1_NV is a very young family of BEL LTR retrotransposons. The CC internal portion of BEL-1_NV encodes the BEL-1_NVp polyprotein CC composed of the protease, reverse transcriptase, RNase H, and CC integrase domains. It is flanked by 100% identical LTRs. BEL-1_NV CC is CC characterized by 4-bp target-site duplications. XX FH Key Location/Qualifiers FT CDS 84..5270 FT /product="BEL-1-I_NVp" FT /translation="MGDPEPRESVDTDPELELNNKIDKEIEKLTFYLEDTD FT EMINSCDFEEMKMTSERTSQINARLNSLILELQELKLDLGKYTARAIRQWK FT KDTKDRYSMLLDNRDRMVRRLEEENKREIQIAEAEKYKLKFEQEERLHREV FT QQREKELWEERLQAEIRVAEKKLEIESAAKASGSKLPELKITPFKGTAEDW FT IRFENMFISQVDNKKISAEEKFGYLLELVEPRVRDHLSNLKPGEVGYKIAW FT ERLREEYGQTKTVVAAHVDQILNLPILKSGGHAKVREFYETLSKSHDALET FT LGEGNMLRGLALSTLNKLQKIRADLVRTDEGWESWEMGDVIKALQKWLKRN FT KPAEESEREPGDKRKERHYFNQKGVSPQTPKGRCIFGCQEAHWGDLCPIYD FT TLEKRRKFFSENRLCFNCGRTGHRENKCNGRGCYKCKARHHTSLCHDKQHN FT AMLSGFTPTSDEKTLPAIIPVVIKGQTFWAYLDTGSGRNFVSREVIRKLNL FT RSVRHESRHIVTVNGVKKQSMPVFEIEMNSVDGKARENLEVTGSQMVDFTT FT IKRPTIAELKAKHAHMRDKSFYRTASEEYPIHVILSDAFYCKIRTEQIIKG FT QPDDPVVEGTTFGWVVHGGKEYADGRCMFVRETNDYERLYALDVLGIEDRS FT ETDQSDVYSEFRENISRTDDGRYKVSVPWVPGAKLENTNEEPSRKRLRNVE FT RKLRNDVELREAYEKIVRDQLHEGIIETVIDKSRGDRIFYMPHKPVVRANA FT QTTKVRMVFDASCKPHPLANSVNECMHTGPPLQPLMWDIMIRARMAPHLIL FT GDLEKAFLQIAIKEEDRDAFRFLFNINDKEEHFRFARVPFGAEASPFMLGA FT TIHHHLDRQPTELTNTVNALRENTYVDNLMQTGNDVDELKEFREEATRIFE FT SAKFPAHKWESDLQDLDTEPNPSKILGHVWDKREDILEIQADVSAQEKDPV FT TKRAILSKLSGVYDPLGIISPTTVEGKRIYRDACEEKRGWNDEVSESTKKA FT WFKWTGQLRNVKIPRSLVRDLRRVKTIHLHVFADASNVACSAVMIAIVEDT FT TGVVKGLLTSKSRISKRNTSIPRLELVSGHMAANMVKNVCAALKRWPITSV FT TVWMDSLVALYWICNPGRQWKTFVSNRVRKIAEITNETPITWKHCPTERNI FT ADLGSRGATIEKMERGEWFAGPDWLLKEEEWPEQPQLQTTKAVKEEHKPVE FT SSMLVLKREPDEWDDLLQRNSYWKTLRVTAWAQRFRANALAKMRKENKRKG FT PLTTDDIAQAEVCWVKRVQKYVQPDPQSPGWEVIKDEQRGVLKCKGRISGY FT EPIYVDDRAFVDKLVQHVHHQVSHLGVANTMSEIREKWWIPKLRSRVKKVI FT NECNLCKVFRAKPYGLSPTADLPSFRVEGGRPFETVGVDFAGPLNYKLAKN FT GKGKCYIIIFTCATSRAVHLEVTKSQTAEEFQRKLNAFITRRTRPVRIVSD FT NASVFKATATWIKKIRKSEVLQDYLAKQGIRWQFNLSRSPWWGGMYERLIR FT EIKKTLYKTMGRSSLHYEQMEEVVVDIERHLNNRPLTYVESDNGEDHVLTP FT NIIMWGQDSHILEDIEVDENEVSKLHARLMMKREQVWQRWRREYIHSLMES FT HRVKRGGNIAPDIGEVVLLVGESKNRGEWTKGKVVDHVRGRDGIVRGVSLL FT HKGHIIQRSLTLVCSLEIRAASKQIPERAPPAASEVIVRPTRGAARDAREK FT VRVLLEDDE" XX SQ Sequence 5438 BP; 1806 A; 1122 C; 1426 G; 1084 T; 0 other; ttagtggtgc cgtgaccagg attaagagaa aaactaggat acgaaccaag agacaaacaa 60 cattccttcg ggataactca aacatgggtg atccggaacc gagagaaagt gtcgatacag 120 acccagaact cgaacttaac aataagatcg acaaagaaat cgagaaattg acattctatt 180 tagaagacac tgatgaaatg ataaactcgt gtgattttga agagatgaaa atgactagcg 240 agcgtacaag ccaaattaat gcgcgattaa acagcttgat tcttgaatta caagaactaa 300 aattagatct tgggaaatat accgcgcgag ctataaggca atggaagaaa gatacaaagg 360 atagatattc catgctatta gacaacagag acaggatggt aaggcgccta gaggaggaaa 420 acaagagaga aattcagata gctgaggccg agaaatataa gttgaaattc gagcaggaag 480 aaagattaca tagagaagtc cagcagcgtg agaaagagct atgggaggag aggctccaag 540 cggaaattag agttgcagaa aagaagctag aaatagaaag cgccgcaaag gccagtggtt 600 cgaaattgcc cgagttaaaa ataacacctt tcaaaggcac cgctgaagac tggataagat 660 tcgaaaatat gtttatttcc caagttgaca ataaaaagat ctcagctgag gagaagtttg 720 gctatttatt agagctagtt gagcctaggg tgcgcgatca cctttcaaat ctcaaaccag 780 gagaagtggg ttacaaaata gcatgggagc gtctgaggga ggaatacggg caaacgaaaa 840 ccgttgtggc cgcacacgtc gaccaaatat taaacctacc catacttaag agtgggggac 900 atgcaaaggt acgcgaattt tacgaaacac taagcaaaag tcatgatgca ttggaaaccc 960 taggggaagg gaatatgctt cggggtcttg ccctgtccac cctcaataag ttgcaaaaaa 1020 tccgagcaga cctggtacga accgacgaag ggtgggagtc atgggaaatg ggagatgtca 1080 tcaaagccct acagaagtgg ctaaaaagga ataaaccagc tgaagaaagt gaaagggaac 1140 cgggagataa gaggaaggag cgacattatt ttaatcaaaa gggcgtatcg ccccaaaccc 1200 ctaagggacg gtgtatattt gggtgccaag aagctcattg gggggacctc tgtccgatct 1260 atgatacact cgagaaacgc cgcaagttct tctcagagaa tcgcctatgt ttcaattgcg 1320 gtcggactgg acatagagag aacaaatgta atgggagggg ctgttataag tgtaaggcta 1380 ggcaccacac aagcctgtgc catgataaac aacacaacgc aatgttaagt ggcttcacgc 1440 caacgagtga cgaaaaaact ttgccagcga ttatcccagt ggtaataaaa ggacagacat 1500 tttgggcgta cctcgatacg gggtctggga gaaactttgt ttcgagggag gtgatcagaa 1560 agctaaatct tagatctgta cgacacgagt cacgccacat agtgacagta aatggagtta 1620 aaaaacaatc gatgcccgta tttgagattg aaatgaattc cgtcgacgga aaagcccgcg 1680 aaaacctaga agtcactgga agtcaaatgg tcgattttac caccatcaag aggccgacca 1740 tagcagagct aaaggccaaa catgcccaca tgagagacaa atcgttctac cgaaccgcaa 1800 gtgaagagta cccgatccac gtgattttat cagatgcatt ttactgtaaa atacgaaccg 1860 agcagataat caagggtcag ccagacgatc cagtggtaga aggaacgacg tttggctggg 1920 tcgtccacgg agggaaggag tacgccgatg gaaggtgtat gtttgtgcgc gaaacaaacg 1980 actatgagag gctatacgcg ctagatgtgc tcggcatcga agacaggagc gaaactgacc 2040 aatcagacgt gtacagcgag ttccgcgaaa acatctcaag aacagatgac ggaaggtaca 2100 aagtaagcgt gccgtgggtg cctggagcta agctggagaa cacgaatgaa gagcctagta 2160 ggaagcgttt acgaaatgtt gaaaggaagc taagaaatga cgtggaacta cgggaagcct 2220 atgagaagat tgtccgcgac cagctacacg agggaataat cgagaccgtt atagacaaat 2280 cgcgtggtga ccgaatcttc tatatgccac acaagccagt ggttagagcc aacgcccaaa 2340 cgacaaaggt acgaatggta ttcgacgcca gctgcaagcc acacccacta gctaatagtg 2400 tcaatgaatg catgcacacc ggtccacctc ttcaaccact aatgtgggac atcatgatac 2460 gagcgcgcat ggccccacac ctgatcctcg gtgacctgga gaaagcattc ttacagattg 2520 cgattaagga agaagataga gacgccttca ggttcctctt caacataaac gacaaggagg 2580 aacacttccg gttcgcccgt gtacccttcg gcgcagaagc gagtccattt atgttaggag 2640 ccaccattca ccatcatctt gaccgccaac ccaccgagct aacgaacaca gtcaatgcac 2700 tccgggagaa cacatacgtc gacaacttga tgcagaccgg aaatgacgta gacgaattaa 2760 aagagttcag agaagaggcg actagaatat ttgagtcagc taagttcccc gcacacaagt 2820 gggagtcaga tttgcaagat ttggacactg aaccaaaccc cagcaagata ctcggacacg 2880 tctgggataa gcgggaagat atccttgaga tacaggccga tgtaagtgca caagagaagg 2940 atcccgtgac gaaacgcgcc atactgagca agcttagtgg agtctacgat cccttaggaa 3000 ttatttcgcc gacaactgtt gaaggcaagc ggatttaccg cgacgcgtgc gaagaaaaaa 3060 ggggctggaa cgacgaagtc agtgaaagta ccaagaaagc ctggtttaag tggacaggcc 3120 aactacgaaa cgtcaagatc ccaagaagcc tcgtgaggga ccttcggaga gtgaaaacaa 3180 ttcatctaca tgttttcgct gatgccagca acgtagcgtg ttcagctgtg atgatagcaa 3240 ttgtcgagga caccacggga gtagtaaagg ggctgcttac atctaaatcg agaatatcca 3300 agcgcaacac ctcgattccc cgtcttgagt tagtgagtgg tcacatggcg gcaaatatgg 3360 tcaagaacgt gtgtgctgcg ctcaaacgat ggccaattac ttccgttaca gtttggatgg 3420 acagcctagt ggcgctctac tggatttgca acccaggaag acagtggaag accttcgtgt 3480 caaatagagt aaggaaaatt gctgaaatca caaatgaaac accaatcact tggaagcact 3540 gtccgacaga gaggaatata gcagatctcg gtagtcgtgg agcaacaatt gagaagatgg 3600 aaagaggaga atggttcgca ggaccagact ggttacttaa ggaagaagaa tggccggagc 3660 aaccacaact tcaaacaact aaggccgtca aagaagaaca caaacctgtt gaatcaagta 3720 tgttagtttt gaaacgagaa cccgatgagt gggatgatct attacaacgg aacagttact 3780 ggaagacact gcgtgtaact gcatgggccc agcgatttag ggccaacgcc cttgcgaaaa 3840 tgagaaaaga gaacaaacgc aaaggaccgc taacaacgga cgacatcgca caagcagagg 3900 tttgctgggt gaagagagtc cagaaatacg tacagccaga cccacaaagc cctggatggg 3960 aagttataaa ggacgagcag aggggagtct tgaagtgcaa agggagaatc tccggttatg 4020 agccaatcta cgtggatgac agagcattcg tagacaaact cgttcaacac gttcaccatc 4080 aagtaagtca tcttggcgtt gcaaacacga tgtccgagat tagagagaaa tggtggattc 4140 caaaactgag gtcaagagtg aaaaaggtga ttaatgaatg caatctgtgt aaagtgttca 4200 gagccaagcc ttacggtctg agcccaacgg ctgatttacc gagtttccgc gtagaaggtg 4260 ggagaccatt tgagacagtt ggagtagact tcgctggacc gctcaattac aaactagcga 4320 aaaatggaaa ggggaagtgc tatatcatca tattcacgtg cgcgacgtct agagcagtac 4380 atcttgaagt gacgaaatct caaacagcgg aggagtttca aaggaagttg aacgcattca 4440 tcacccgccg caccaggcct gtgcgcatcg tatcagacaa cgcgtcagta ttcaaggcaa 4500 cagcgacttg gattaagaaa attcggaaaa gtgaagtatt gcaagattat ctcgcaaagc 4560 aaggtataag gtggcaattc aatttgtcga gatcgccatg gtggggaggg atgtatgagc 4620 ggctaattcg agaaataaag aagaccctct acaagactat ggggaggtca agtctgcatt 4680 acgaacagat ggaggaagtt gtcgtcgaca tcgagcgaca tctaaataat cgaccactca 4740 cgtacgtaga aagtgacaac ggagaagacc acgtcctcac cccaaacatc atcatgtggg 4800 ggcaggattc tcacattctt gaagatatcg aggttgacga aaacgaagtt agcaaactgc 4860 atgcgcgact aatgatgaaa cgagagcaag tttggcagcg ttggagacga gaatacatcc 4920 acagcttaat ggagagtcac cgcgttaaga ggggaggtaa catcgctcct gacataggag 4980 aagtcgttct tctagttgga gaaagcaaaa accgaggcga gtggacgaaa ggaaaagtag 5040 ttgatcacgt gcgcggcaga gacggcattg tgcggggcgt gtctctgctt cacaagggcc 5100 atatcattca aaggtcacta actctcgtct gctctctaga aattagagct gcgagcaagc 5160 agataccaga gcgtgcgcca cctgcagcat cggaggtcat cgtgaggccg actcgaggag 5220 cagcacgaga tgcgcgcgaa aaagttcgcg tcctactcga agatgacgag tgaactcgat 5280 gacaacacag caagaagact acgttgtaaa agcggaaagt caacgatgta aataatacgg 5340 gacttattct acaagctcta tacagaaaga gactttaaag agactcttat tgttttgtct 5400 ataaaattaa ttcaaggatc atcaatttta ggggagag 5438 // ID Kolobok-N25_NV repbase; DNA; NEM; 1436 BP. XX AC . XX DT 21-MAR-2011 (Rel. 16.03, Created) DT 21-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N25_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; NVREP237; Kolobok-N25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1436 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1436 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1436 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N25_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (21-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~90% identical to the consensus. It was reported CC originally as the unclassified NVREP237 transposable element CC [1,2]. XX SQ Sequence 1436 BP; 475 A; 262 C; 257 G; 441 T; 1 other; aggtcctgta aacaccccgt cggtcatttt tgggatataa tagaaaatct ggcgtagaat 60 acgaatatcg aggtcttttt gcccgtttcg gcctaaaagt tgaccttttg gtgattgcaa 120 ttttacttcc ggttgaatat acggcggaag taaatttacc ctataggttt taacattaaa 180 acgatgttct tttcgacatt cactgcaaaa aatcttgcat ttaaatattc tcaaacttga 240 tctgttctgc aatcataagt ttgatcactt tacgtttcgc gggacacaaa aagctgtgtt 300 tttccaaagt tcacccaagg tcattcagcc aacatgccta gtagaaactc tcacagcaaa 360 acagtcatca tccgaaaagt ttgagaacga tgaagaataa gaacctgtcc cttacaaacc 420 tacaaaaaag aaatgtgagc tgaaaataaa tgagatttac aacgatactc catcaacaga 480 acagtggtaa aacaaagtca aatggtaaga tttcactcgt gaaaagaaag tggataggct 540 caatttgctc aataaaacgg tcaattttat tcacagacct taattctatt atgcaactac 600 taccatttta tcactagaat atctgcttta aagggttaca attgttcgcc ttttgccttt 660 tggggggaag gttttagttt tcgaatagga aatattgaac agttttaagc aaaaataaca 720 acttcgccgc ccaaccgcgc attatgatgc tcccaaagag ctaaaagcaa tgtttatatc 780 gtcaaacgtt actatttaaa gcataactgt ttaatgtgct cggagagaat aaatcacaaa 840 caatcaacga ttcatgaatg aaaataccat tttgttgacg atgagtcatc ggctgcttcg 900 caatctttta tttcagtcat ctcatcccac tttagaggtt ttmtaaggag caggttcttc 960 tgattatcgt taccaaattc tctataacct ttcgagtgtt gattgttttg ctgtgcgagt 1020 tttagctggt gcgtttgcaa aatgaccttg gatgaacttg gaaaaacaca gcattttgtg 1080 tcgtgcagaa cgaaaaaaat aaccttaaaa tctaactaag ttagagtaaa tttctatcaa 1140 agatcttttg cagtgatgtg aagaagagat caaattttcc gatgaaacat ttttcgtagc 1200 tgttaaaatt taagaaggtc gttttattta agcgcaaaaa ccatcaaatt agtgttaaaa 1260 cctatagggt aaatttactt ccgccgtata ttcgaccgga agtaaaattg caatcgccaa 1320 aatgtcaact tttaggccga aacgggcaaa aagacctcga tattcgtaat ctacgccaga 1380 aattctgtta aatatcgaca aaatagtttg tttgatacta ggggtttaca ggacct 1436 // ID Kolobok-N2_NV repbase; DNA; NEM; 258 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former CON2; Kolobok-N2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-258 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 361-361 (2007). XX DR [1] (Consensus) XX CC Kolobok-N2_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N2_NV transposon CC is characterized by 25-bp TIRs (3 mismatches) and TTAA target CC site duplications. This family is composed of several hundred CC elements that have been transposed continuously for a very long CC time: the youngest and oldest elements are ~10% and 30% divergent CC from the consensus sequence. XX SQ Sequence 258 BP; 71 A; 46 C; 51 G; 90 T; 0 other; agtccgtagg tccgacttgc gtgacaatgt tgttttgttt ttgttttgaa tattcaaaac 60 ttgcatcatt tttcaaaata caactttccc tgtattattt gatactttaa aaatagaatt 120 gagctgtttt agttgtagga tggattgaaa ttcaccgtga ttcaagcgga tttaattcac 180 tactgagatg aacatctcat ttgcataggg tttcatagcc tacgaaacca cgcgtcacgc 240 aagtcggatc gacgggct 258 // ID Helitron-N4_NV repbase; DNA; NEM; 3051 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N4_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N4_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3051 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3051 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N4_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 600-600 (2007). XX DR [2] (Consensus) XX SQ Sequence 3051 BP; 936 A; 503 C; 576 G; 1036 T; 0 other; tagcggagcc accgcggccg cggccgtagg ccgcgcgcgg agctccatag gtatagaaat 60 atggtatagc tatgcgactt ggtttttgtg gtcgtagcgc gggtaccctg tgtgtcacaa 120 tccagtaaat catgcaactc ccaggcccca ctcggtctta cgtttttacg tgttttttac 180 cgcctcagtt cgcatgttca cagaaataga aaatagtatt taatgagaat atatgcgtat 240 tcaaatggaa tgtttgtggt ctagggtcaa acaagtcttt gaggaagcgt ttgtctgacg 300 aaactgagaa atttagaagc ctacgtacga gccgatagta aaatggagcc gtgtgtttgt 360 gaatccgccc gtctcgtttt ttcaattgta gcagcagcta aaaggaggac ttatagaggc 420 tctacactgc tattctcata aagatgtcac gaagcaaaat caatgcagga aggtaaagtt 480 atcatattat tatttaacaa gataattttt tcatcagcag aaagaaaaca caaaccacga 540 aggatatttt ttattcacaa taatcagata attaaataga acatatataa attaaatgag 600 cagtttctgt ttaattccct atatttgtct tgtttttcgc ttcaaagtta agttgaaaat 660 tgtcaccaaa acaaaacgtt tctggccgta gcttcattgt agttgtcatt gatttaaatc 720 acccacttcc accgtgattt ggattggcta agaaagccaa tccttgaacg ctgattggtt 780 gttggcagtt tattggcttc catgtctgtg taaatcgtga aaaacttctc aaaagtcttc 840 cttctacaaa taaaggctta ttttcttaag ttaggagaag tttaacggct aaaaatgctc 900 agttactttg gagaaatgat gtactgtttg gcataatcga ttgagaacta tatccggcta 960 tttaccttct gtagcaagcg aatgtttttg caatcaaagt atatacttac ttaaagacat 1020 ctaaaaagta ctctctagtt ttgatcttac ttttaagatt caagagctct aaaatatttt 1080 tctatcactt ctctataaaa atctattgaa attttctttg tctgtttttg tttggtaaaa 1140 attaatttgt ttttgttttc tgtgtctttt ataccaagct gttttatgag ataaaaaata 1200 tatttctatc acttctctat aaaaatctat tgaaattttc tttgtctgtt tttgtttggt 1260 aaaaattaat ttgtttttgt tttctgtgtc ttttatacca agctgtttta tgagataaaa 1320 agtgcttgcc taggtacatg ctaaagtaat gacatgatat agctggtata gctatgaaat 1380 gactaagtat tccttttttt caggagaatt caggtgaata aagcaaggac taaagtgtac 1440 ccagagtcat ttatgtagct ggttgaaatg aaagcataga tgaacaggaa cagcattggt 1500 aaataaatgt ttttcatatt cctttcttgt ttggtataat tatattcaat caacccacat 1560 tctttcccta tagccaacat aatatgctct tgctgtgttg atacctccct aaaaatctga 1620 atgaataaga gccttactta tcatatacaa gttacttact gtatttaaca ttattgcaaa 1680 ttaaccaaac tgattgtatt ttttttcagt tttgacacat gaatgctggc aaaactgtca 1740 ttagcaaatg tagatagtct ttttttcttg taattgtctt atgcatttgc tcaatggctt 1800 ggccctcttc atgtctgatt agcttttact tattcatgaa catggttcaa gagagtaact 1860 catatgtaat aatgacaggg gaaaggggtt ggaatattta aaagtagttc aaaagatatg 1920 tctgttgtta ttaagatgga agattgattt taatacagga tctaagtgaa gggatgatgt 1980 atacatgaaa ggatttgatt tatcaaagat ttgcagattg gtatccaatg aacatagtaa 2040 ttgggaaaat gtataaaaag gattaggata ctttatatga ggtggtgtag aattgaggat 2100 cacatattct acagtagggg gtggaaagtt ttcaacctag gtgttgtggg gtatgtaatt 2160 ttgggctctc taggccccat agtatgatta tagatttgca aagagagcta aagagtctag 2220 aaaaggctaa aaatgtctgt aatatcatcc ttttcagcac tctttacatc tataatcata 2280 ctacttcgac tattaccaat tgcaaccagc cacccacagc accttggccc ataccaccat 2340 gcttatagcc taaccttccc ccttgcttca tggcaacctg aaattatgct gaacaacatt 2400 ggctatagta ctgacatcat ttttatttca ggatagtccc tttttataat atccaaataa 2460 tatccactca tctcttattc aatggcacat aaacttgtgg gtcccttttt ctaagggtac 2520 tgatcccaaa gaagtctatt gacccattaa aagttctttg tagattctct gaagtatact 2580 caataaataa aacaagacta acataaatgt ataatgccca atttagcaat atctgattat 2640 atggcaaatt tagaaatata ttttctgtat cagttgtcta tcaagtacaa cccacataat 2700 agctcagatc cctctttatg caaatagtat cctgagtact gtcaataaaa actactaata 2760 gcgccattgt tctgggtatt ctcttggggg attgggagga tataatagga aaaggttgaa 2820 aagtaaaagt tataagccat gtatttttat gcatttaaga tagggttgga aggtcaaata 2880 cctgatcaaa atcaaattgt agaatcctgt tatgtccctg tgtgtgtccc tcgctgaagt 2940 ttggtcttcg ttgggggggg gggggggggt aggtggggat gaggacatac acccagttta 3000 gagtggaaaa aattgctggc tccgctttta ggcagtgcct aaatctatat a 3051 // ID LTR-1B_NV repbase; DNA; NEM; 1201 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-1B_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1201 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1201 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1201 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1201 BP; 333 A; 207 C; 278 G; 383 T; 0 other; tgtacaggac ccgaaatgat cccaggaccc gaaacgatcc caggacccga aacgatcccc 60 aaaagtaccc caactgatcc cgggacccga aacgatcccc aagagtcccc gaaatgaacc 120 ccaaggaatt acagtaatgg acaactaaag gaatgtgtaa ggattggctt tcagttttaa 180 aaacatatga aacatttagc tttgtttgtg ttattaaaag gaaatttaca ttaactaaaa 240 ctatagtatt aagattttta tatacgactg cgggggaaat acagtggttg agtcagaaat 300 tggggtcaac taacaactcc tgtgatagta atttgaggag cccggcgtgg ataaatcatt 360 tttacataac aagccataaa agaaagtctt tacagatggg acatgctgct ttacatagga 420 agcgaaatgt tttaaagtta ttttttggca tgtttgtttt cggtaaatga aagacctatc 480 atatcgtgag atcatgccgg ggtgtacgca cgactacatg aggaaattca aaactcacat 540 aatattgctt tcacatcctc ttaatatttt gcatcggtag tagaagggtt gttcgagtgt 600 attactcagt gtgcttttgt cattccatct tctcggccaa accggctgcc taaaatgtgt 660 cggtaaatat tcgctcgtgt gaacaaggat ttcgtggtga aatacatgtt tggttgtcag 720 atgaatatta atttttaggg gtgatgttta ccggaaatga gatttatagt gtcggagtca 780 tgtgtcggaa ccgcaaaatg ttaagagtgt gatggaaggt caaaagtttg gttgatctga 840 gcaaagctgt gctatgttta tgctgtattc ctttcagtag caatttaaag ttgtgtattt 900 gttttggact ctgtttatgg gtttaacgcc gggcaatgta ataaatagaa gtattgtgtt 960 ggaatttaat atttttaagt cacgttgttt agaaatcgag tcgctgttaa ccctttatta 1020 tgcttcaaga attgcaagta tttcttctgc tttccctttg tccattaccg caattccttg 1080 gggttgattt cggggactcc tcggtatcgt ttcgggtccg aggatcagtt ggggtacttt 1140 tggggatcat ttcgggtcct gggatcgttt cgggtcctgg gatcatttcg ggtcctgtac 1200 a 1201 // ID DNA-6-5_NV repbase; DNA; NEM; 212 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-6-5_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-6-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-212 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-212 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-212 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-5_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 212 BP; 58 A; 51 C; 61 G; 42 T; 0 other; agggcccccg aatggtcttt ggcgagcact tgcgagcttg cgagcacccc gttttttatg 60 cgagaccgag catttttagt tgttgaataa atcgagcagc gagcacatcg aaaaatacaa 120 tgcgagcacg gcggaaaaaa atgcgcgagc atgcgagcat tagccgaaaa ctgcgagcac 180 atcgaaattt cgggggacca ttcgggggcc ct 212 // ID DNA-0-3_NV repbase; DNA; NEM; 283 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-0-3_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 0-bp TSD; KW NVREP53; DNA-0-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-283 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-283 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-283 RA Kapitonov V. and Jurka J.; RT "A family of DNA-0-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 80-99% identical to the consensus. It was reported CC originally as the unclassified NVREP53 transposable element CC [1,2]. This tranposon does not produce target site duplications. CC It shares the same 5'-CATATCA and TGATATG-3' termini with CC DNA-0-1_NV. It is most likely that both families belong to a CC novel class of transposons. XX SQ Sequence 283 BP; 78 A; 53 C; 65 G; 87 T; 0 other; catatcaata tttgggtgac cttaaaactc gctcggccaa tctcttggag gcctgggtct 60 aagggctttt caaggcttgt gtgataaaga tttgaccaag cgataaagtt ttttttgaca 120 catttttgcc tcgagtctca aattgacagg aatcagcatt tttcaccatg ttttctggag 180 atcagggagc gggaaaactt tagctcttct aaatatgggc atcaatgccc atataaggca 240 atgcatacga aggacactat ccgtggggaa tatgtttgat atg 283 // ID Mariner-3_NV repbase; DNA; NEM; 2166 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-3_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Tc1 group; TA TSDs; Mariner-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2166 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2166 RA Kapitonov V.V. and Jurka J.; RT "Mariner-3_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 611-611 (2007). XX DR [2] (Consensus) XX CC This transposon contains 400-bp TIRs and it belongs to the Tc1 CC group of the Mariner superfamily. It encodes a 353-aa CC transposase. XX FH Key Location/Qualifiers FT CDS 626..1684 FT /product="Mariner-3_NVp" FT /translation="MPPRNRIPFEHRERIIRSFEDEEEDYLLVADTLGVNP FT STARGIVARYIREGRIEERPRGGRNNVRVDDEMRDCLNDIINDNCLLTLSR FT INQELRRRLPLKPRIHDRTVARTLDGMLFRVKLARPLPAERNRPDVLQKRV FT DYGNWFMNRGVVHHSVFVDECGYNIWTARSHGRARQGERAYRQVCGQRGRN FT ITVTMAISPINGLVFHSAIIGGMNAQRFSDFLTQARLNLDPDEMVIFIYDG FT APPHRNPAIPGPNTELKMLPPYSPFLNIVEQAISSLKAAIKADISRPEVQA FT QMGDRGAARDQGLALGVFRTRLLLQALQRNIGTITPAKCAQWYRFMQTYLP FT RCLNGEVIEG" XX SQ Sequence 2166 BP; 664 A; 432 C; 462 G; 608 T; 0 other; caccttttgc tgttcattac caggaaatct acattcattt gcggcaattt acgatcaata 60 acgcgaatat acattcattt tcgtcataaa gcgctcattt gcgtgaacac aaatttcatt 120 agcgatattt acatcgccag taacattcaa tcgcaaagat cgacagtcat tcgcgccttt 180 cgtcattcaa aggcgaaaaa tgtactttaa tctgcgtgtt tattcgatca ttaacaaaaa 240 atctatagac aaatgtgcga attgacagtc atatgaattt aacttatatt tattagtgtt 300 tattgacatc tttaacaaaa agagtgaatt caattgaatt tatagacaac catttatacg 360 gacatgacat aaattagtgc gattatacaa acatttagac cttctttgca ttcattaacc 420 aaaaatcttt tttcaataaa acaatagata atttgagtgt tttttttttt ttaccaaact 480 agatatttta taagctttcg cattctgaca aaaggttatg caaccctttc caaacaaata 540 acggtataaa tgtagacaac attgtacagt tttttttctg ttcggcaata ctgtacagtt 600 cgtgccattg ttcagtaccg ttgcaatgcc tccaagaaat agaatcccct ttgagcaccg 660 cgagcgaatt atacggtcat tcgaagatga agaggaagat tatctcctgg tggcggacac 720 attgggggtc aacccttcca cagcccgtgg tatcgttgct agatacatac gagaagggag 780 aattgaagaa agaccacgag gtggaagaaa taacgtaaga gtagatgacg agatgagaga 840 ctgcctaaac gatatcatca acgacaactg ccttcttact ctcagccgta tcaaccaaga 900 actaagaagg cgactgccct tgaaaccaag gattcacgac cgcacggtag cgagaacgct 960 agatggcatg ttgttccgtg taaagctggc aaggcccctc ccagcggaaa ggaacagacc 1020 tgacgttcta cagaagagag tagactacgg caactggttc atgaaccgtg gtgtcgtgca 1080 tcattcggtc tttgtagatg aatgcggcta caatatctgg accgcaagaa gtcacgggag 1140 ggcgagacaa ggagagcgag cctatagaca ggtctgcggg cagcgtggga ggaacattac 1200 cgtaacaatg gcaatatcac caatcaatgg tcttgtattc cactcggcaa ttattggtgg 1260 catgaacgca cagcggttca gcgactttct tacgcaggct agacttaacc tcgacccgga 1320 cgagatggtg atatttattt acgatggagc gccaccacat cgcaaccctg ccatacccgg 1380 gcccaataca gagctgaaaa tgctaccacc ctacagcccc tttttgaaca ttgtggagca 1440 ggcaataagc tctcttaaag cggctataaa agctgacatc tcaaggccag aagtacaagc 1500 ccagatggga gataggggtg cggctagaga ccaaggcctt gcattgggag ttttccgtac 1560 gcgtttgctt ttgcaagcgt tgcagcgcaa tattggtact ataacccctg ctaaatgcgc 1620 tcagtggtac cgattcatgc aaacatattt accacgatgt ctgaatggtg aggtgatcga 1680 gggctaatgc aaagtgcagc gaaatgctct atgtagaact ttaacatgac tcaccgttat 1740 tgaaaatata tttttcgtta ttgaatgtaa agaacgcgca aatgcttgta taaacccagt 1800 aatgtatgtc atattcgcgt gaatgactgt ctataaatgc tattgaattt cactctttgt 1860 tataaagatg ttaataaata tgtgttgcac acagttgact gtcaattcgc ctaattgttt 1920 atcgtttttt tgttaatggt cgaatgaaaa cgcagatgaa agtatatttt tcgcctttga 1980 atgacgaaag gcgcgaatga ctgtcgattt ttgcgattga atgttactgg cgatgtaaat 2040 atcgctaatg aaatttgtgt tcacgcaaat gagtgcttta tgacgaaaat gaatgtatat 2100 tcgcgttatt gatcgtatat tgccgcaaat gaatgtagat ttcctggtaa tgaacagcaa 2160 aaggtg 2166 // ID DNA-3-3_NV repbase; DNA; NEM; 2545 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-3-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-3-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2545 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2545 RA Kapitonov V. and Jurka J.; RT "DNA-3-3_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 393-393 (2008). XX DR [2] (Consensus) XX CC DNA-3-2_NV elements are flanked by 3-bp targets site CC duplications. CC The consensus sequence contains long TIRs. Termini of DNA-3-3_NV CC differs CC from elements that belong to the Harbinger and En/Spm CC superfamilies, which CC are also flanked by 3-bp TSDs. It is likely that DNA-3-3_NV CC belongs to a CC novel superfamily of DNA transposons, which also includes CC DNA-3-4_NV, CC DNA-3-5_NV, DNA-3-6_NV and DNA3-7_NV. In addition to 3-bp TSDs, CC all these elements CC have the 5'-TAG and CTA-3' termini. XX SQ Sequence 2545 BP; 781 A; 510 C; 497 G; 754 T; 3 other; tagtccaatc aatctacggt ttaagatcgg actaattgca acacaaggtt ttcaacgttt 60 ttgtattaat taagtctccc tttataacat actaaaagtc taaaaaaatc ggagcacgca 120 aacaccccga aaaaccgcat cgaatttccc catacaaggc ttgtatgaaa aaccacagga 180 atcccaaatc atgaaaatca cgaaaaatat acatactttg aaaaaaatca aatttatacc 240 actataaatg ataagaaata tatatttcta cacgatctgg ataaaatcaa cgttatctga 300 tatagcttat ctattttggg caaaatccac aggtttctat ctttacgggt atttagaagg 360 agaatcaagc acgtaattat tatcattagt ttgagtttgt ttgattttaa tggcgtcgat 420 ctcaagtttg ttatctttct gcaaccctgc tttcaattat aattattaag tgtgatttta 480 aatgcaggac cacagtgata tcagacggag tctgaagggg cttatcctgt aaaaacattg 540 gtaaaaaata taaattttgt caccatcacg atgcagttct tgcggagatc gccctttttg 600 caagactcta cactgaaaaa cacctgcacg ggtgtctaag ccgacagcgc tgataccgct 660 aaagtgaccg agaagagatc ttgtaagcag atagcacaac ctcgcaatcg gcagttccca 720 ttgacaatga cgtcgtacat gttacagctg tcgtttcagc gctcaattct agctcatccc 780 cagaagacct tgaacaacat ttctcctttg agctctgaag ttttcctcca gcattgttag 840 actctatgat gagagtggtg cagaagcctg ttttggccga ggtcatttgg tccacatgga 900 tggataccaa aacaccatct accgwgctac agtatgcatt ggatggaggt gctcttctac 960 actgaatacc ctggcccaag gaagccgaca cattatttca cgaagrttga aactcttgta 1020 actgtatcgt ggtgttttga tcggtaacgc cgatggcttc tcaacagagg tcatgacagg 1080 aaaaaaagat caggtaaaat cggagcctcc gttacgttct tttttaaaca tggcggtccc 1140 tatgaagaaa ragggttttt tggcaaaaaa gaaaaacaag cagaatttta ttcaaatgtt 1200 gagcaagtac ccgagggtaa gcggttgtgg cacaatggac acggaagctg atgacgaatc 1260 gaatatatga ttgcttatgt ggaaagctgc ggtaaaatcg tccacacgat tagcatcacc 1320 gttcctgttg gtgacgataa ttccgtatgg aagcccatga catctacctg agccgaaatc 1380 caaatctaca cgaagatgtg gggaatgacg gccataaatg agctgctagg gaaaagtttt 1440 aatgttattt ctatttctca ttttattttt tgctttttat ccatgcgctt cttggttgtg 1500 ataccacctt ccatgaatac gggtaggaaa gggggcatcg ttcaagaagc ttgtctcctc 1560 accctacatc cgcgcacagg cagctgttaa caggacagag ctaagagagc cacaaaatct 1620 atccccaact tcagcagcag ccatgttcca cagttccaag ttccagtatt ctatcaagtc 1680 aaccaatgga aaggcgatag aaaggcggtc tgaagtctga gcctagatgt tggtcaacga 1740 cagggtgaac ccttaacaga tcttgagaga cctccaggac tgcagcacgt ttagtgctcc 1800 tgccgcatga acaatctagc gtgttcgccc tacggccaat gcaaagggtc atcgtgtact 1860 aattccctct caatcgaagt cacggattcc atggatttaa tctgcaccca cgagtaagaa 1920 cctagagttt aagaacctgt aacagggtct taattttaaa gaaattataa aaaacttcca 1980 acattaaaga atctattttc acaaaaaacg ataccatgag aatgattata ttataagtaa 2040 tgtgtccata tactttcttg ttttatactg aatcaatgac attattatta agagccacta 2100 agcactattt gtatgagaac ctgttttcat cacgtatagt catttatgat aacgaaatgt 2160 ctgcaagatc aaagtggtgg tgacaaggat agctaaaaaa tctgtgcatt ttacccaaaa 2220 taactgaact acttcaaata acgttaattt ttatcctaat cgtgtagaaa tatatatctc 2280 tagtaatcta tagtggtata aattcctttt ttctaaagta tgtatttttt tcgtgatttt 2340 catgatttgg gaaccctgtg gtttttcata caagccttgt atgtgaaaat tcgatcccgt 2400 ttttcggggt gtttgcctgc tccgattttt tttagacttt tagtatgtta tagagggata 2460 ctttctgtgc aagaaaccgt taaaaaacct tgtgttgcaa ttagtccgat gttggcccct 2520 tttttgacgt agattgactg gacta 2545 // ID Gypsy-56-I_NV repbase; DNA; NEM; 4264 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-56_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56-I_NV; KW Gypsy-56-LTR_NV; Gypsy-56_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4264 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4264 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-56_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 547-547 (2007). XX DR [2] (Consensus) XX SQ Sequence 4264 BP; 1305 A; 852 C; 1034 G; 1073 T; 0 other; tttggcgagg agtttgtttc ttttctacgt gcacgaagtc gcacgagaaa ccctagctgg 60 tgcggaagac ggttttgggg aagaattgaa gtgtttccta ccgaaatttg aagtgtattt 120 cccttcgcgt tgtgaatcaa gaattcaaga tggcggccag tggtttgttt ggtcgcgtgg 180 gagaatatca ggaaaataga gagacattca aatcctatgt tgagagaatg gagatgtttt 240 ttctcgcaaa tgggatagct gaaaccccag gcgaagacaa cgaagcagca aacaaagtag 300 ttcgagaaag aaaacgggcc attcttctca ccgaactggg tcctgaagtt tatacaacgt 360 tgagtaatct attggttcca gcaaagccga gcgacacacc attcgacgag atagtgcaag 420 ccctagggaa gcactacaac ccgccaccgc tggaaattgc tgagagtttt catttcggaa 480 ctcgtgtcca gaaagaagga gaaacaatca gtgattttat tgtggcgcta aagaaactgt 540 ccattcactg cagttacgga gagttcctta atcgtgcaca acgggatcgg tttgtttgtg 600 gactaaacag tgcaaagatc caaaacaagt tgttaaacac agaggatctc acatttgaca 660 aggcttgtca gatatcaaag gcaatggaga tggcagaaaa aaacactcac gaattcaacc 720 tgacaactga aaaggcaagc agccttcaag ggacagtgaa taaactagga actgctagaa 780 aagggaacac tgaggaacca tcctgttacc gctgcaaagg aaaacactat gcctctaact 840 gtaagtttaa attagctaag tgttttaaat gttccaaagt cgggcatatt gcgaatgctt 900 gtcgtagtaa gccttgtgac ccaagtgata aatctaggcc ctctccagaa cccagtggga 960 atttacataa tgtaacagga aataagagta acgtgtatga tgtaatgtat aaagaaagtg 1020 acggatttga tgagctgggc atctattcca ttgccactga taggcccaga cgcaagcgat 1080 acacggtaga gttatcgatc aatgggtcta tgtgtgaaat ggaggtagat accgcagctg 1140 attattctgt gatgagtaag agcacataca tgcagaaatt cagtcacatt ccactcttac 1200 cctcagagac ggtattgcga acgtacacgg gagagacact tgaggggtgt ggtgagatgc 1260 agtgtgaagt agagtacaaa ggcaataggt accatctggc cattttcata gcagattata 1320 atggcagacc tactctgcta ggcaaggatt ggctttctta aataacgctt gagtgggata 1380 agattttcag ggtcaatcgc cttactgtcg tgcctaatca tgacaaaagt caacttgatg 1440 cattaatttc taagcacagt gagctgtttg aggaaggtta cgagggcatg acaggttttg 1500 aggcccacat cactatgaca gatggggcaa aaccagtgtt cttcaagcct cggaaggttc 1560 cttatgcatt gaaggatgct gtcgaaaggg aactggataa gctagagaaa catggggtga 1620 taaagaaaac ccagagatca gaatgggcta gcccaattgc agtagtgcct aaggcagata 1680 agtccgttcg gatatgtgga gactataagg taaccataaa ccagtttgta gaggatgaac 1740 aataccccct agctaccaca caggacttgt atacagcact tgctggatct aaagtgttta 1800 gcaagttgga tttgtcacat gcatatgcac aattgagtgt tgatgaggag agtcaggaat 1860 acctaactat aaacacttac aaggggctct actcttacac taagttgccc tatggagtaa 1920 aatcctcgcc taagcttttt caagccaaaa tggatcagat actgcaaggg ctagataagt 1980 gtgtgtgcaa acaggatgac attctgatcg gtggtgatga ctggcaagag aatattggaa 2040 ttctgtctga ggtactagcc agattagcta aacataatgt acacctcaag ctacctaagt 2100 gtgagtttct gaagccagaa gtcacatact tagggttacg gataaatgct gaaggcctgc 2160 atcccgtaaa ggagaaagtg gatgctgtaa gagaggcacc tttacccact aatgtaagtg 2220 agttaagatc atttttgggc atggtgcaat actaccattc tttccttcca ggcctagcca 2280 caacactagc cccattgcat aatctcctta agaaagacat cccatgggaa tggacaacag 2340 agtgtcagca tgcctatgag gcctgcaaac agggtctcac aagtgaggca ctattggtgc 2400 attatgatgt taatcgtagt ttaaaactgg attgcgatgc ttctagttat ggaataggag 2460 cattacttag ccatgagatg gatgatggcc aggaaagacc aatagcctgc gcatcgcgta 2520 ctctgagttc tagtggagag aactatgctc aaatagagag agaggccttg tccataatat 2580 ttggagtgaa aaagttccat cagtacctat atgggcgaaa attcactcta gtaacagatc 2640 ataagccact gttatctatc ttaggcccaa agtctgccat ccctacactt gcagcaagcc 2700 gcatgcacag gtgggctata cttctctctg cctatgatta cgaaatagaa tacagatcct 2760 cccaagaaca cagtaattgt gatgcacttt ccaggctacc acacgaggat tccagtgtag 2820 gtagtgaggg aacaatctac atggtaagtg catttgatga ggatttccta ctaactgcta 2880 aggcaattgc tcagcaaact caattggatc cagtgttgag cagagttctc cagtatgtta 2940 tgtcaggctg gcctgaggta tgcgaggatg aaaacctcag accatatttc agcagaaaga 3000 tggagctgtc atgtgagcag cactgcgttt tgtggggatc cagagtggtt atccccctcg 3060 cctcaaggaa gaaaatgctg aaagaactac actgggagca cccaggtatg tgtggaatga 3120 aagctatagc tcgtacttgt gtttggtggc caaaaatgga cgaacagatt gaagaagcct 3180 gtagagtttg ctcggtatgt caaagtgttc gaagtgcccc tccaagtgca cctttaattc 3240 cttggaagtg gcctaccagg ccattccaac gttttcatat tgatttttgc caagatggca 3300 atgactattt cctggtggtt attgacagcc actcaaagtg gattgatgtg caacacatga 3360 cttccaccac tgccttgcgc attattgatg agctcaggct gatttttgcc aatcatggtt 3420 tgcctgaaga agtagtctca gacaatgggc ctctgtttcc tattagtttg ccgaatttat 3480 gcacaaaaat ggcataaagc acacattggt tccaccatac catcctcaat ctaatgaggc 3540 agccgaaaga tctgttacgg tagttaaaga ggccctactc aagcaagtca ttcagggcac 3600 aaagggtatg tctatgaaaa atagacttga tagttttttg ttcaggtacc gtaccacacc 3660 tcacagcact tctggcatga gtccatcaga gttaatggta aaacgccaac tcaggaccag 3720 gcttagtctt gtaaagccac accttgcaga tgctatagag aacaaacaag agaaacagaa 3780 gttctaaaag gatttgaagt gcaggaaaga gcgacaattt gagaggtgtg atagagtgcg 3840 tgtgcataac accagagcta gctcaaagag ggataagtgg attcctggta ctgtagttaa 3900 agtatgtggt cccagaacat atgttgtaaa aacaggacac aggactagat atgtccacac 3960 tgatcacatg atcagagcac atgatgatat ctgtgatgac gggaatgaac cagatatcac 4020 agtgcctgag tcgtgtgagc agggtggcac agagagtgag accatgattc agtctgacaa 4080 agtcaaccaa ccagctgcta gtatttcaga tcaccatgta actccagtaa aacctcagga 4140 tagttctgtt acccaaactc ctgtgctgag gagatctcag agagttgtca aaccggttgt 4200 caaactagat ccataagtag ttgtgttcag ggtatagtca actcctcctt ttagaggaaa 4260 gcag 4264 // ID Gypsy-28-I_NV repbase; DNA; NEM; 4260 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-28_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28-I_NV; KW Gypsy-28-LTR_NV; Gypsy-28_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4260 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4260 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-28_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 487-487 (2007). XX DR [2] (Consensus) XX SQ Sequence 4260 BP; 1301 A; 1119 C; 1072 G; 768 T; 0 other; ttggcgacga gcgacgagga ttcgtatcta ctaacagtta tttccacagg cgaaattcaa 60 ctaaaatcat ggcggcagcc ctaccgacat ttccagaatt cgacgtggca gaaaccagca 120 ctcaggctgc acgttggaag aagtggctgt ccagattcaa gaacctcctc gtagcattga 180 acatcaccga caagaccaga caaagagctc tactgctgca ctacgccgga gaagcgacga 240 acgagatttt cgataccctg gcagacacag aagctggagc aggcgacgat ccgttcgaaa 300 aagctgttca agccctgaca ggatacttta ctcctagaca gaacagagag ttcgagatct 360 acaaattccg ccaggcaacc caagaacccg acgagagcat cacagcgttc cacacacggc 420 tacgacagct ggcaacctcc tgcgagttca acgatatcga ccgtgaaatc aaaacacaga 480 tcgtacagag ctgtatttct cataagctcc ggatgaaagc cctggaaaat ccatcgtact 540 ccctgacaca gctcctagat gcaggaaaag ccatggaact atctagatcc caggcggcaa 600 gcatcgagaa gcaagagtcc gtgaataaaa tcgagaaaga ccgaccgaac catcgccaag 660 ggagaaacaa agatggccga cgtcgtcaag acaacgcgcc cagccagcag tcacgtgacc 720 ggaagccagt gcctgaaaac cggaagtcga gcgaaaaatg ccggaattgt ggtagaggat 780 atccccatgc tggtggaaaa acatcgtgtc ctgcctatca agcagtttgc cgaggatgtg 840 gtaaatcaaa tcacttcgaa gccgtttgcc ggtcaaagaa caaggcccca gacaggaagt 900 cacgccgacc tgtaaacaaa ataagcgaca gcgagtccag cgatgaagaa gaggcgtaca 960 cgttctcact tagtacaccc aagacgaagg accagccctt ctttaagata aaagtgcaag 1020 gaaccccagt cacaataatg gcggactctg gtgctagtat taatgtcctt gacgaagaag 1080 actaccggaa gttgccgaaa agcgcaaagt tagagcagtc tggcgtcaag atattcgcct 1140 accagtcgac aaatccccta caagtccttg gaaagttcac cgcgatcacg gagtctacca 1200 ctaagaatat cagtgcgcga ttctacgtgg tcaaaggatc gggcggctca ctgttaagct 1260 ggaaaacttc ccaagagctc aatctcctcc agacggtgca gcaagtaact gcgaagacac 1320 cccaaggcaa gaccaaggtc aacgagctca caagcctcat cgacgaatat gacgacctgt 1380 tccatgggct aggcaagctg aagaactatc agataaagct acacatcgac gaaaacacac 1440 cacctgttgc acagccgcac agaagggtcc cgtttcacgt tcgcaagcag ctagaggaac 1500 agctacagcg ggacgaagag cttggcgtga tagaacgcgt cgaaggccct acaccctggg 1560 tgtcccctat agtggttgcg ccgaaaccaa agtccccagg caagatacat gtgtgtgtcg 1620 acatgcgcca ggcgaacaag gcgatcaagc gcgaacgtca cgtcacgccg accatcaagg 1680 agatgatagg agatttaaac ggagcgaagg ttttcagcaa acttgacctc aaccaaggat 1740 acaaccagct cgaattggcg cccgagtcga gatacatcac cactttcagc acccacatgg 1800 gcctaatgcg ctacaaacgt ctcaacttcg gaatctcgag tgctgcagag attttccaga 1860 atgtaatccg agagacactg gaagacgtcg atggtgcgat aaatatcagt gacgacgtac 1920 tcgtatttgg caagacacag gaggagcacg accgaaatct gagggcagtc ttcaaacggc 1980 tgagagaaaa gggcctaacc ctcaacaaaa gcaagtgcga gtacggcaag gagaagctgg 2040 agttctttgg gtacgtgttc tccaaagacg gcatatcccc agaccccaag aaagtcgaag 2100 acgtggtcaa cctgcagaca ccgtcaacag catcagaagt acgcagccta ttaggaatga 2160 cgaactactg ctcaaggttc atcccagact acgccaccaa gaccgagcca ctacgcaagc 2220 tcacccacaa ggaccaaccg tggtgttgga cggccgagca tgacagcgca gtcagccagc 2280 tgaaggacgc actagtaagc gcacccgtaa ccgcctactt cgaccccgag aggcgcactg 2340 aggtatctgt tgatgccagt cccgttggtt tggccgccat cctatcccaa gtagaaccca 2400 agaccgaggc gagacacgtc ataacttatg cgagccggtc tctgacggaa acagaacagc 2460 gatatagtca gacggaacga gaagccctcg cggtggtatg ggcatgtgag tatctgcacc 2520 tatacatata cggcaaacca gtgacggtat acacggatca caagcccctg gtgtccatct 2580 acggcaacgc aaactcaaag cctcccgcaa gaatcgagag atgggcgctg agacttcagc 2640 cttaccaagt caccgtaaag tatcagcgag gtgaagaaaa ccctgcggat tacctatccc 2700 gtcatccaac aaagttcgca gctgagacga gcagacaaca gaaggtggca gaagaatatg 2760 tcaattatct cacaaagaca tctactccaa aagccctcaa aacacaagac atcgagaacg 2820 cgacagagag cgacgcaaca ctgcaggctg tggccgaagc catacgcaaa gggaactggc 2880 acagtgcggt caagcgtcca agtgttgaca agacagattt tcaactactc gagagggtaa 2940 aggatgagct gacgatgaac gagtccggca accttattct acgcggaaca cgcatagtca 3000 tccccaagag tctacaatgt cacgtggtga agctggcgca tgaaggtcac caagggctag 3060 tgaagaccaa atcacttcta cgtgagaaag tgtggttccc caacattgac aagcaagtcg 3120 aaagcatggt gaagtcgtgt agcgcgtgtc tgattactac acccgagagt acgcgagaac 3180 ccctacaaat gtctcctctc ccgaaggcac catggacgga agtcagcgtg gacttcgctg 3240 agctagcgag caaggaatac cttctgctga tcgtcgatga ctacacgagg ttcccgatcg 3300 tcgaaatcgt gtcttctacc tccgcagcaa cggtactgcc caagctggac aaagtgttct 3360 cggaatacgg agtccctgaa gtagtgagat cggacaacgg tcccccattc aacggcaagg 3420 aattcgcatc attcgcagat gacctcggat tcaagcatcg aaaggtcact cccaaatggg 3480 caagagcgaa cggagaagtg gagagattcg tccggaccgt gaagaaagtg atcaagactg 3540 cgaagacgga gaacaagagt tacaagcaag aaatgcagag gctgctgaga aactaccgcg 3600 caacgcctca cagcacgaca agagtcgctc cagcaacagc gttgttcgga aggccgctga 3660 gaacgaagtt gcctcagact gcagtaccct gcgccgatca agagatccga cagcgtgacc 3720 aagcggcaaa ggagaagatg aagcagtatg cggataacaa gcggtatgtc aaaccttcga 3780 ctctagcgga aggagatacg gttctagtga agcgggacga atcaaagcgg aagagcgaca 3840 caccctacga cgcaagacca cgcatgatcg taggaaagaa aggttctatg gtcacagcgc 3900 aagacgagga tggtgtcaag gtcacaagaa actcgtcctt cttcaagagg gtacctgcac 3960 ctgcggaaga ccaagatgat gtccccgatc aagatccacc taccccggca gatgtcaccc 4020 ctccgcggcg ttacccgcaa cgcgcacgat cacgcccgca caagttagat gactacgttt 4080 gcgacaagta gtcatctccc aaacgaacta tgttagaact gttgattttg aactttattt 4140 ttagagctaa tgatagacta aaggacttag tttccccagg tcattttgat tgtatacttt 4200 aatttagttt gaattacgtc tattatatat gtgctaggtt ttctccaaag aagggagaaa 4260 // ID MuDR-2_NV repbase; DNA; NEM; 4279 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone MuDR-2_NV autonomous DNA transposon - DE consensus. XX KW MuDR; DNA transposon; Transposable Element; MuDR-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4279 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4279 RA Kapitonov V.V. and Jurka J.; RT "MuDR-2_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 623-623 (2007). XX DR [2] (Consensus) XX SQ Sequence 4279 BP; 1353 A; 829 C; 884 G; 1213 T; 0 other; gcaattttcc ctttcgtaaa ccatcgttgc catttggaac ggtcgttgtc attttaagaa 60 cggtcgttgc caaaaaaacg tggggcgagt tcgtcgagtc aatatttact cggagtttcg 120 tcggcccgtt gaactatagt ccatatcgcg tcggaaaaaa caaatttcca aaatggcgga 180 catgaacgac ttgatcaaag ctgcgataga agaagtaaat tctcaatcca aaccttttca 240 aagtaaatct attgacgaaa atagattcat cgaaacactc ccagaagact gtacttatca 300 cgtgaaagag ctttcgggtg tagaggagaa gttcaaggcg attatccaaa cagaagaggt 360 aactaccgag aatctagatg gatggctgga cgaatatgaa gcgattaaca gcattactgt 420 tcgagtcaag accaagaaaa agcaaacaaa agggtgtgcc ctgaaaaact attacaggtg 480 ccaccacaac accaggaact ggagcccaag caaggaccca cagaagaagt tactgctgaa 540 cccttctgca agggtaaaaa acactaactg ccctttccaa atgtttgtca agatcgcttg 600 tgatggctgt tgcacgattg agattacttg ggatcacaat cattcagtcg atactcttga 660 agcctcgaat tttcatgatt ttccaccaga agttattgac aaagtaatga aactctttga 720 aagtggctgc accccatcca ctgctagaca gcagtgtctg aaagacttga gagagtcatg 780 caagggtgaa cttgactacc acaggaaaaa ggccaatcgg tctttaatgc caagaaggag 840 agatttttcg tatctataca cccagatgtg caaggagaga tatggcggga caggccactt 900 gatgttttca aaaatggtag aaaaattaga agaatacaga aaagcaaacc cagaagctag 960 cacaaagcac caaatttatg ggggtgatga tacacctctg ataattacag ttatctcacc 1020 acttatgaaa cgtgtgcaca aagaagtcca gcaatcagcc gaactagttt ttattgatgc 1080 cacttcaaat accgaagaac acaacttaaa agtgtttgtt gtgtgcacac acaatgttgc 1140 tggagctctg ccattaggta tccttattac aagtgatgaa agaaaaaaat ccttgaagca 1200 gggttttgag atgctacagt catgcttgcc agactatgct ttttatggcc atggaccaaa 1260 agttggccct gaggtcattc taaccgacaa ttgcaaagag gaatgcaatg ctctcaactc 1320 agtgtggcca tcctgtaaac tgcttctatg catttttcac atgcttcagc aggtttggag 1380 gtggctacat gagaccagcc atggtatcaa tcaagttgat cgtccctaca tcctcagtct 1440 ttttaagaag agcttgtatg cagaaacaga ggaactgttt gaggactgct tttctgaact 1500 gttgaatgat gacaaatgca aatgttatcc aaatctggtt gactatttgg gaactctgta 1560 tattgagaag gaggcatttg ctctttgctt tcgtacagaa ctacgagtaa gaggcaacca 1620 cactaataat tttgctgagg cacagttttt agtactgaag ggtacaattc tgaggagagt 1680 taaggagtac aacgttgtcg ggcttatcag caagctcaca gttgagttgg aggaccacta 1740 taaagacaaa ttgttctcca tagctgatgg cagctttgat ggtctttaca gacggcgctt 1800 tatgggtaaa ggaaaggatg gcagctcagg ttttcgcact cctgatttaa gggaacgcga 1860 cttgtatcta tcaactgttg aaaagttcaa caacaatgtg tttaaagtta ggagctcatc 1920 aaagaacaat gaaaggtaaa ctaactgttg tcacagcttg tgcatgtatg tgccatttag 1980 ggagtgttca ttatttatgg tttggttggg tgggtggggg gctggcattc tgtggcactc 2040 tacttgagtt tttgtttcct gtacaaccgt cccttttgca acatcgatgc gcgcaaaact 2100 tacaactgcc cttttcaact ttggatctgt tgaaactaaa aaaaacagca aaggggaaga 2160 aaattagagt acaacccaac agaaaaagaa aaaatgggaa tggaagccag cagaaaaaaa 2220 aatggtaatg gaagccagca ggccaccctt aagggtagac cagtacagct gcagtcatta 2280 caagggccta caaaaaaacg gaaacgtggc tatgacctgg ctaaagcggt acagtccaac 2340 acacaaggca gtaagaagtc tggctcacat acaatgatgt caaaaacaaa gcatatgcaa 2400 aggaaaaaaa gtagtaaaaa aagttgaaac tattttttaa attattgtat agtttcttat 2460 tgccatatat gaccatgtat aagtcaaccc tgtgtataag tcaaacccct aaaatattgt 2520 aaaaatttat gtttttatgt tgttttgtgt ctaagttgac ccctagtttt tccaggattt 2580 cttattaaaa acaagtgttg ctacaaatta ctaaaaggct tctgatcact gatttgtact 2640 atttaaatgt ttatttaatc agacatataa caaaactgta taaaattcca attctcaatt 2700 ccccttcgac ttgaccatgg aggttgtact aatctattat tactattatt aatagaatat 2760 tttttgcacc ccttcctctg ttattgtcta aaaaacatgt cctcacttgt tgccttttac 2820 tcaaaactga taacaacaga gaggactact gatgggactt gctgtgccta atgaggtttc 2880 ttttcactgc aaaagtcttt ccgcagtccc cacacttgaa gcttgctgca tgctttttgt 2940 tgatgtgtct ttttaacttg ttttcatggc cgaatgtttc attgcattca ttgcaaatgc 3000 atggatgaca tcctttttca tgatactttt aagtatcttt gcttctggaa aattctgttt 3060 gacaagaagc acacttattc ttcgttgcca tgcctgtgtc aagatcctct cttatgcttt 3120 gtgccttgtc cttccagtac tgttgaaaca ataaataaca taagcttttt aatacaacta 3180 ccatacaata tgctagctca tggtcatcat agttaatgga gggatgttgt agaacaaact 3240 gcaaagtgaa atttaaaaat ttgtgtgagc gaaccaagag cacactatag atttcacttc 3300 gcaaatgttc taaacactac agactgtggg aaacctatca aacttcaaaa tgatctaaca 3360 attttgtatt ataatattat gaagggtaaa aaatagtcag ctgaatacct gaatccacaa 3420 gaaaatgccc cacattttcc ccaccctccc ccaaggtggg gtgcaataga aaacataagg 3480 ttggatagtt gaactttgat ctttcattca aaggacaaac ctttcttctg tccgcaggca 3540 attttttcca cattctgcca acgaccgtgg aaatttttcc gattcctgcc ccatcactca 3600 gctgtttctg tacatctggc taaagacggc gaaaacaata acctctaagt gacttaaaaa 3660 agaattccaa agattcgcag taggttgttg gatagtttac attttctgtc aaccaaactc 3720 agagagaaat cgtgttggaa atatggttaa ataatgtaca gtcagtaaat ttatgagaaa 3780 gcagaagaga gcaaatgagg gagagtatag aaattgtata ccttctttaa aaaatagact 3840 tgcgacatgg tcgaaatctt gagactccca ccactgtgag agagtttact ggtatggact 3900 ttctaaattg cagatatttt atttcacgga ttgctattag acctattaaa ttatcgcaac 3960 tgactggtaa aatgcgttcc agccggttgg tttccgaatc gaatgcattg ttgggggagg 4020 atcgcgttgt tgttgttcgc acgtggatgc ttcttgttcc gccatatttt aaacacaaaa 4080 ctccatgcgg ggcttttgta ccacagggaa cccaaaggca ctcgcgtgtg atgtctcgga 4140 gcgttttccg atcgccggag ataagagtat gacataaatg ggctaaaatg acaacgactg 4200 ttttaaatgg caacgaccgt tcttaaaatg acaacgaccg ttccaaatgg caacgatggt 4260 ttacgaaagg gaaaattgc 4279 // ID DNA-9-35_NV repbase; DNA; NEM; 1165 BP. XX AC . XX DT 15-MAR-2011 (Rel. 16.03, Created) DT 15-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-35_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP93; DNA-9-35_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 63-1163 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 63-1163 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1165 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-35_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (15-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~91% identical to the consensus. It was reported CC originally as the unclassified NVREP93 transposable element. CC Target site duplications vary from 6 to 10 bp. However, it looks CC they all were 9-bp long at the moment of transposition. CC Subterminal 5'-TA(G)n and (C)nTA-3' sequences have different CC numbers of G and C in different copies, from 4 to 36 bps. XX SQ Sequence 1165 BP; 336 A; 227 C; 250 G; 352 T; 0 other; tagggggggg ggttgacacc ctgtccatga gcacttgcgc gtgattttct aagttagcag 60 caaaaaacgc gcgaaattcg cgggaaaaat ccgtcaaaat gcatcgaaga aaatgtcaaa 120 ttatccttat taaatgtgta aaacaagtaa aatgaaacct aaggaattaa agttggagtc 180 acaagctagc tcatgtgtgt ttttttcata cattatgtaa taatggtgag tagatttggg 240 ttgtgagttt tgagatgcaa actaagactc cgaaacattg ccccgccgtc ttgtttgttt 300 acatttttgt aagacaaata tttcgtattc taaggactct ctaccctaat actttagcta 360 gttcgattca tcaggccttt agtaaactat taatcggggt ctacctctaa actacctcac 420 tcctaagggg cgaattttgg ccttgaagat agactacttg aatcaactgg tctctgaaaa 480 ttgatcacgt catcttgctg tccttcttgt tttactgggg ttgcacgaac cggttgtctt 540 agcttttgac tgactaaaat aacatatcaa gcacagattt gatgaggatt tgccagaaga 600 ataattagac tacaactaag ccttgaggtc gaggaatatt ttgccaactt tggctagaaa 660 atgaggttat tgtaggtgta ttttattttt caaactgtct gcgcgcgctt cacgggcaat 720 cgaaaatgac gccattcccg gcgcgcgcgc acgctatttt ttaaaagttc gttattttgt 780 agtcattttt agctgtagga aacaaatttc tcgtgaccat cagtgcaatc tttaccaaga 840 aaaatgaaaa tacagtataa aaggcatagg tattgaaatt aaatcgttaa atcgtccggg 900 attgagtaat gaaggcccgt gggagaaggc cgtggatttg aaaggcaaag aaaacatctg 960 ttttcaaatt taaatcttga attttcattg tcgaggcatt cggcgataat caagctagtt 1020 tcttcctcgg aatgcctcgg agctattcca tcttgctctt accgccttca tgactaagat 1080 catctgcgcg ccatcacgac gcgcggcggt tgataatatg ctttgacgaa gtgcatcatg 1140 ggaagggtgt caaccccccc cccta 1165 // ID hAT6-N1_NV repbase; DNA; NEM; 366 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A family of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; NVREP9; KW hAT6-N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-366 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-366 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1194-1194 (2007). XX DR [2] (Consensus) XX CC It is a family of non-autonomous hAT DNA transposons that belong CC to the hAT6 group, characterized by 6-bp target site CC duplications. hAT6-N1_NV contains 12-bp imperfect TIRs (4 CC mismatches) and shares common termini with the autonomous CC hAT6-2_NV. XX SQ Sequence 366 BP; 98 A; 102 C; 58 G; 108 T; 0 other; catacctgtc aactctcccg cattaggcgg gagtctcaag attttggacc ccttctcccg 60 ctctcccgcg ttgagcacca aatctcccgc tttttagcga tttttatcgc ttccgaaaaa 120 ttattctata gaaaatcgtc attttgccta ttttctatta aaatatttga aacaataatt 180 cccttgcgta gcgcaattta tctaacaccc tcgtgagatc tataagtgga tttgttcgtg 240 agagctttct atacggcaaa cgcctgcaag gttaaaccca cccctccccc caaaaaaatg 300 aatatacccc acccctcccc ccaaaaaatt ctcaagcctt gagattttcg gaggttgaca 360 ggtatg 366 // ID Harbinger-1N2_NV repbase; DNA; NEM; 126 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; Harbinger-1_NV; Harbinger-1N2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-126 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 158-158 (2007). XX DR [1] (Consensus) XX CC Harbinger-1N2_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons derived from the autonomous CC Harbinger-1_NV; they were active in the Nematostella vectensis CC genome in a last few million years. The Harbinger-1N2_NV CC transposon is characterized by 45-bp imperfect terminal inverted CC repeats and 3-bp target site duplications. XX SQ Sequence 126 BP; 32 A; 29 C; 33 G; 32 T; 0 other; gggccggttc ctagaaagca ggttagcgct aacccaggga taaatacggc tatcttgaca 60 tttgattgga taaaaagggc atttatccct gggttagcgt taacctgctt tctaggaacc 120 cggccc 126 // ID BEL-7-LTR_NV repbase; DNA; NEM; 212 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone BEL-7_NV autonomous LTR DE Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-7-I_NV; KW BEL-7-LTR_NV; BEL-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-212 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-212 RA Kapitonov V.V. and Jurka J.; RT "BEL-7_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 377-377 (2007). XX DR [2] (Consensus) XX SQ Sequence 212 BP; 46 A; 52 C; 41 G; 73 T; 0 other; tgttagagcc cgtcgcaccc gctcggggcg tctgtggtgc gccccgaaga gactggaccg 60 gtaaaagtat tatgctttaa gtttttgtca ttccactgtt gttgttcctg tttttcgcat 120 tccttattcg catttctcaa aattctcgta ttccatcgca tgtctcgcaa ttcttgtact 180 accgaaaaat aaaacgtttt tgattcaaca ca 212 // ID Polinton-1_NV repbase; DNA; NEM; 17653 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Polinton-1_NV autonomous DNA transposon - DE consensus. XX KW Polinton; DNA transposon; Transposable Element; Polinton-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-17653 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-17653 RA Kapitonov V.V. and Jurka J.; RT "Polinton-1_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 647-647 (2007). XX DR [2] (Consensus) XX SQ Sequence 17653 BP; 5468 A; 3739 C; 4068 G; 4359 T; 19 other; agtagtatag tacttggcgg tttcagcgca gcgcaaaaac cagccgagcc tatactactc 60 accagcgtat ggtatcatat tctggtatga ttatatgata aaggattttg gtgaaactat 120 atgataaaag attttggtga aactatatgg tatcatattg tggtgagact atatgataca 180 agattttggt gtcagcttat gaataaatta ctggaactat atgctttctt catttcgtgg 240 aatccgtgcg gtgtgtgcgg gtctcatttt ataatgcaat catatggtca cggctgytgc 300 gtgacattct tggaatttta attcttagga gcgagtcagg ggattccccg cgggcgagtc 360 tgagcatgtc tattgtattc ggatataggg gattycccgc tacgtcatac attccactct 420 tycctaacaa tcgagctctc gtgaggcaaa cacgaaagct agctccagac tcgctctttg 480 ttagggaact ctggaatgca atctattgtt ctccacgtgg acagtgattg tgtgttaatt 540 agtggcacgt ggatcgctcg tggttagctt tgtgtttata gtcgacacag ctgtgtcatg 600 acgtcacata aaaatataat ctcttgtatt agcatataga atggattgta atacagggat 660 ccatatggca ttagaggaag agggatatta cgattgtcca ttttgtgatc taaggatagc 720 ggagtacgtg actaagggag agtcggcgag gttcgaggca tgttgtggta ggcaggatat 780 ggtaaatgac aatggagcta atgtgtgtag aaattgtggt gttcaccatg gatacgacta 840 tgccgtcgag tatgttgatt tttacgagaa tatgtacagg atacgtagga agtcagtgta 900 ccatcggaag taccatttag aaaatgtgtt gtttgatttt gacttagaag ggaataagca 960 tgacctactc aggagattcg gactagttga gacggctatg aataaattat ttactagaaa 1020 acgatatatt cagataaagt tcattctcta caaattgttt caattgaaag atgagaagca 1080 gagtatgaga caatgcataa aatatatcag tcctaggaca ctgaggtatt atgagaagtt 1140 gtggaagcag gtttgtgatc atctaggatg gacgtacatt catggtagtg agtttataac 1200 taaacgtgtg gagacgaagt gatcaccatc tttctctaga gatatgtata tgcttcccat 1260 atggggtctt atcataataa aaccttatgc taaagttttg tttagtttgt ctctcatttc 1320 taccataatc tgttctcgga tatggtcctc gctttttttt tctctcaact gaggtgagcg 1380 tttatatacc ttttcccgta tcgactctct catttcatta tatttttcag cctctttgat 1440 aatgagattg aattcgtctg aggatatttg gttgtcggtc aatgctttgc taataaggtc 1500 atcgattgaa ctcaatttag atttagctag catcacgata tctgcgtgtt tctgtacatt 1560 tttcgatagt ctcttagaga ctgatgccgt cactgttgaa acaatagcac taacacctga 1620 cagaactcct aaaggtacag ccacagggat cccaacccca gtcaacccag tccccaatgc 1680 cccagccgat agggctactg agagggaacc cgacccgata gctattttgt ttataatcga 1740 ccgagacttc gcgtacttct tcctaactct ttggtggtgt tcgaggtttg cgctaataga 1800 gttcttaata gaacagattt gttgtagtct gaaactttta ccattgtctt cctcggttgg 1860 gatggttggg taaatttggc cacatctctc atgtggtctt gcttcgtaca tgttgtccat 1920 tatattatat ggttagataa tctcgatgta cgtttcttgt ttttggctat cgtacatgta 1980 ttcgacatcg ccggatagct cctcacacat tacgttgcta gtgaaaagcg ctgggttagc 2040 acccgtctcg gtgttaatgt gtaggacggt tccattagca ccccatacgt aaagcatgta 2100 cctcacagct gaaagtgtct gagggttatc aaatactaca ccagtgctcg tgtgtaggtg 2160 gtttttcggc atgatcacac cccaagaggc gcctacttgg ttactagacg ctagaatgtt 2220 ctgcccaatg aattgataag aggcgccccc aacgctccgc ttccaagcga agtagaacct 2280 cgggtcggtg gacacaccga tgatctccgt gcagtatagg actaaattcg cagttagttt 2340 gattatgttt tggctgttct tcaatcctag gctgatgtaa aaaccagtta cctctctcca 2400 accatcattg ccgagtaata tttgggcttg gtgtatatgt tttgctctgt atgaggctat 2460 acgggcacta tttcctatat cgtcagcgac tgactcactc acttgatagt tcgccgctgt 2520 ttcgccttcg atgccgaagg catacacttg gattttttgg gggcttggtg agttatgtga 2580 gacggtgaaa gtgatagtac ctatgaagtt acctgtgtcg attacagcct cagtgaatcg 2640 gtagcctggc ttcccatcta tggcgcctct cttaatgcta tccccacgga agccccaccc 2700 ggccgtttgg atgttgatgg tacccatcgt aagcatcaca tttgggtcta tgcagtagca 2760 ctcgattcga atggtgtagc ctctagatgc tgtcagtccg gtagtgttat cgataggtag 2820 agagatggct attgtttctt gtgccccatt tgggacatcg tctactaggt agaagccttg 2880 gtgtttaggg tacagccctt ctgatatata ggctcctcta attattttca ggttacttga 2940 tgttgagctc caaaggcttt ggttgtttag aaaccataat gcgttgtgtg tgatatatga 3000 cctttgtcca ggtctgaggg cgttgatttg ttggggtgtt agatcatcgt atgttagtgg 3060 atcacctttt actccctgtg cgccctggtc tcctttgtca cctttgtcac ccttgacccc 3120 ttgtatgccc tggtcgcctt tatcgccytt atcacccttt tgcccctgta gactagcgtg 3180 gtaactggac acttcagtca ctctgacgtt ggcactgccg acgctgtttt ctacgatgtt 3240 gaatattacg tctttcccta atgcctcaag ctcgaaggct attctcttgg tcgggctgta 3300 gattattggg tatatagtct tgagcgacac cccattgaaa gagtgtctgt agtcgtgcca 3360 taccccagag gagtccttga gctgtgtgtc gacgaagagg agcgtcccaa aggtcggatc 3420 cgttgggttg taagtcatta gctccccatt ccccacacct gtatttagcg ccgtcatgct 3480 ggtcttagcg ctttggaacc tcagccaact gtcgtcaccc ctgtctcccc tcacacctgg 3540 ggctccagac gctcctggcg gccctcgctc gcccttaggg ccttgcaagc cttgtttaaa 3600 agtgaactcc tcaaaagttc gtagtttaat tgtcacgttt gatagtgtct gtgtgaagtt 3660 gaagccggtg tcatttagtt cgaayttacc gatttccgta gcgaaggtcg cgtttctaac 3720 gtttgggaac tgtaccacgg tgaacgaccc atagttgtcc gtgcttagtt gaacatacaa 3780 aacgatccat tcggttagac tgttaaactt atggttaaat tgaccgcttg atatggtagt 3840 gtcgtagtcg gtwgtactct atcttttggt ctgtcagtgg gataccaacc tcgccgaatt 3900 taagcccttg caccttaatc agtctattgt cttggcttag gttgttctct ctaatctcta 3960 ggcttgtggt ggatgtgacc tccagtttga tcttgtaact agggttttgt gcctgctcga 4020 catcgctata gaactctagt gtttgaccga ctgatttgat cgttgccgtc cgggttgcat 4080 atcgtgtctc tgatactgag tttatcgact taacccattt gaaagtgaag atgacgagat 4140 cacattttgt catgtcaaag cctatattga tggcaccact cacactccaa acatctgtat 4200 caacctgacc gacgacgatg ggtttgttac ttcctgagct cccgtcccta ccaggcgcac 4260 ctggcggccc ttgctcgccc cgagggcctt ggacaccaag attcaaatct tgtgcattga 4320 atattcccat tatagtaatg ttatactaaa ctcggccgta gaagtttctg gctatcttct 4380 tgtctggttt actcacatac aagaatgagt atggtttact caytgattta ctgtattgtt 4440 ccttgctaac gccaagctca cgagtgatca gtcctctttc gtttgtagat gggaagtcgt 4500 atacacaaaa gtgactacaa tttaacctga cgtcctttgg tgtcttatag tatgactgag 4560 ataggtatat tacgctgcag ttcttatgcc gacctcgaat gaagtaatcg ataattggtg 4620 cctggttctt ttcacatacg aagtcatcga aaatgattat tttttgtgtc tcatcgtcta 4680 gctcccccac ggggatgacg tcgtcactac tacactcgat aacgctgtac ccagtatggt 4740 gactgatgtc gctaaatgtg tggatgaggt cttggtattt cgactgctct aggctcttgg 4800 cgtacaggta gatcttgtcg aagtggatga ggggtgttac tagcatatgg atgaggcagt 4860 ttgtctttcc cgaccctgaa gggcctgata tcaaaagtcg gaagttatcg ctaggcatga 4920 atttgcagag ctgcttgtac tttttgttcg ctccagtgtt agagtcgtag ttggggatgt 4980 ccattcgtat acaagtaccg tagataattt gagataagtt gggataagtt cagataaatt 5040 tgtgtaacgt atatgtatat ggacattgcc aatgcgaaga agcatattat cccaaagatt 5100 gaagctggga agatggttag gatcgttcgt gaggccatta aggaaacagg acgtatcaag 5160 caggatgagt atgagggcca aaaagaggcg ttcaagccct tggttgagaa gttggataag 5220 gagatagagg agataagcga tcttagagag aagtatgtag actctatgag tagaccaata 5280 gtgtatccag agaggccggc tatcaccgat ggaagcgaga ctgctgcgtc caaggtggtg 5340 gatttggaca atggcttcac cgacgatgat aggaagattc tgagtgacgc tggtcttcct 5400 ttaccaagtg tagtgtggaa taggcagatg cgtgatgata caacagttag taagatgttg 5460 gatataagca gtaaactgaa ccaggatcta gggaggaaga aggggcgtct ctctggtact 5520 aagaagtcta aggagaaaca tgctgatgtg ataagtgact tcactagaag gattgatgtg 5580 ataaagaggt atagggatag gttagggagt tttggggagg gggagaagat ggctaagtca 5640 gggaaaggat tatataacca accaaaacgg aatgcgtata agatatcaca aaatggacga 5700 tacgggactt taaagataga cgtgccgaag cttatgggtc acctcagact gatagcccat 5760 aaggacggtc agaaggtgta tgacaagaga gtcgacttcg atacgataga tatactcaca 5820 aagcgtttca atggtagtaa aaaatacagc gacctctcta gaatggtatt caacgagctg 5880 aatgagctag gtgagctccc aatacataga acctcaaaga agtattcaaa aattggttca 5940 ggtgtggtgt actacaacga ccccaaagac cttctatcta ggttggaatt acttggtggt 6000 tcgattcaag cgggtaacga ctcagtcaag ggtgagttct ccgaagtcgc tcatgtgcta 6060 aggagattgg gtgttatctc gaacgaccaa cttggagagc ttttgtctaa ctatcttgta 6120 tagatggaaa atattgtaga gagagctgtg tacatctcat cccgtgatcg cgaggcgcgt 6180 ggcgtcagcc gacccgatga tttcactatc aaaatgaacc cgtcattacg gctttctaac 6240 gacgccagac acgagatcgc cgtcgacaag atatcgatga cctacagctg gcataacatc 6300 aaccccgaat atgggaacga tagtgtcaag tactcacctg atggtggggc gacttggaca 6360 accgtcacct ttccaagtgg gatgtactca taccatgatc tgaacgattt tttacatcag 6420 gacatgaaat cgaacggtca tgtaggggtt gctgatggta aagacaaatt ctatatcgac 6480 atcgtattcg tcctcactac ctacaaagtc gtcgtcatag tcggcgataa atatgaactg 6540 gacataaggg ggacaaaatt cggcgaactc ataggattcg acccaaaagt catctcgaag 6600 actgagtatg gatctaaatt acccaacatc acgaacagca tcgacacgct ccacatcaac 6660 actgatctaa taaccgacag cattgtagga ggtcgcgcta gtaacacgct atttgtcata 6720 ccgacagaca acttgagtcg gagctacccg ttctcagtcc aaccaaccag agcgctgttt 6780 aacaacgtgg ctgccaattt gattagcagt atgagattct acgtcgtgga ttctattggt 6840 cgtcctatca atctcaacgg tatcgaatgg cacatgactc taatcctgag gtcgatatat 6900 tagtctaacc taattgtata tgagttctca acatgagtat aagaggagat atgaccccga 6960 tgtgggtaga tacgtgttga agcatatcta cggcgggggc gtttttgact cgataactaa 7020 tctcggccgt aaggtatttg gaaagacagc aaagaaggct gtaaaggatg cgacgagtaa 7080 agcagtctca accgctataa gcaaaactgg tgattacgct gggaatagag caggggatca 7140 gatcgtcaag ctcttacaga agaacaaaaa gggtgcccaa cccactgtta gcccaacacc 7200 aaccaaagat gctccgttaa cagactctga gatcaacgaa cgtgtccagc gtatattaaa 7260 cggatctgga agggtgcgaa ggttgagagt gtgaggtatt atctaacctt attatataaa 7320 tgtatagaaa tccgaagtac gtacaacgct atgaagacgt gtcgttcgat ctagagactc 7380 cactagtctc aaacgtcgcg aacaacgcgc accaaactct cacagggtat cgtattgtgg 7440 ccgacaacag tggagaaatc gcgcctctcg attggtacaa cgcccgtttt gaggttaatt 7500 tcaaagtcca attgctagcg gatggtggaa acatcgctgt cgacgatcac aatggtattg 7560 taaatggtag tcattcactg atcaaagaga tatccgtcaa ggtcaatggc attccagtct 7620 acgacaacac acaggcggat cacaccgtta atatcaagaa cctacttgag tacgacactt 7680 catatgctca aacgactgga acaaacgaat tttacttcct agacactagt aggtctgctg 7740 aggagagagc tggccaagcg ggttataata agggctttgc tgctcgaaag gctttgctcg 7800 ggacatctac aactgtcaac actgaaatac ctctcaatag atactctttc ttcgaagcgt 7860 tcgaagacaa acttatgcct aacacaaagg ttgagataca gatcactcga aatagtgacg 7920 cgactctcat atggcaagca ggagcggatt gccgagtcgt tataactaaa ttcaaactgt 7980 gggtgccacg aatcatcttc aactcagggg gtgagagcat gtatatgagt aaatatttag 8040 ctccccataa gtggacttac ctaagggaga tggtcgagcg gtcaaactca ggaagagccc 8100 aaacagggag ctttaagata accagtggaa tcaatcgtcc tagacatgtt ttcgtgtgga 8160 tatccaatga cgccaatgag gattctcaaa cagtaaatcc attcctatat aacacatttt 8220 cggtggctaa caataggacg ctaacgagtt gtcatctaga ggtagggact ggtaaccagt 8280 atccagagag tgagtaccag gttagttctg agatgtctag agtgttccga gacgtcttag 8340 gatacgtcaa ttccattaat gactacaaag gaggaaccct actgactaga akcaatttcg 8400 gcagcatttt cccattcatt tacttcgact tgaggaacca gaaggctgat attaaagatg 8460 gtaccaccaa gttgacattc aaatatagat taagcgctgg ractaacgcc gactacagcg 8520 tgtatgccct tgttttgtac gaacaggata aaacggtttt tgtataacgt attagtatag 8580 atgtcgtatg tcaaatacaa tgtaagattg actccaggtc aaaaggagaa gttgctcaag 8640 tcatatgaga agaaagcacc aataactctt cgactaaagc atagccaact gtcaggctca 8700 gatactgtgc tgttgacaaa aagccagatt aatcgagttg agaagtcgaa acggaatagg 8760 acagggactg acataaaaat cagtcagact cagattagaa atcaggaagg tggattcttg 8820 ggcgctctat tgccagcact tgcccgcctt gggtcagcag cactaccata cctatctaag 8880 gccgtcgcgc cattggccac gggtgctctt agtggactag ctagttgggg tgtcaataag 8940 gccttaccaa agactggctc tgggctattc agtgtcccgc aagacaaagt tgacaaacta 9000 ataaagtata agggctacct aacgcaaaaa caaaaggagc aaatcgttca agccctccaa 9060 actgggtctg gtatcccaca gtttaaacta actagaaagc aacaggaagg ggggttcctc 9120 ggggcgttgc tcgcttcgat cggggtgccc ctgcttatgt cagctctatc gggtaagggt 9180 ctccaagtag acaaccggcc tcagaactac cttcaaacgt acagaatccc cccaccacct 9240 aagcctaagg gcggccgcct aagccaaaga ccacctccat tttacggtca gtgggatgac 9300 ccaacgattg gatatggagc taaaccaaag agaaggcaaa aaaaaaaaaa aaaaggcaag 9360 agggctcctg ctaggcaaaa acagcccgtt caacggtatc ccactactcg gagcgctgct 9420 ataaggtttg ttaataaacc actttcaaac atcgaccttc taaaatgggt caccaagcta 9480 ggcatagaac acttcagagg tgtatatagt cgcgatgatc tacccaagcg gatccataaa 9540 aaggaatgtg ggatagtcaa cctcgacgat agtagaggcg ctggaactca ttgggtctgc 9600 taccgaaata tagacgacac gtactgcgaa tacttcgaca gctttggaat tggagtgcca 9660 catgaggttg agcggtacct agctacgtct ggaaaggcac ttgcttattc aggggatgag 9720 atccaagaga ggctgtcagt actttgcggc tactggtgct tgtactacct cctagagaga 9780 caaaaggggg tctctatgtt cgacgctatt cataatgact cgatcagtct aaatgaccaa 9840 ggggggaacc ataggttcct catatcatac tttagtatac tctaatgata tatgaagtct 9900 tactgcatca aggagaagag agtcactgat tgcatcccag actctgaacg gtacgagaaa 9960 actaaaaacg gacgtacgat gctaaagtgt acttgttcat catgtggcat aactaagagc 10020 aaattcgtca gcgcaaagga aggtggtaaa ctagatatcc ataaaatgat cggctacctg 10080 cctaagccca agggcgggtt cacacctggg agctataaat atatggggcc atacaacccg 10140 cttgagaaac aactcgtata cgacaaagag actggccaag tgactgattg gaaggtcaaa 10200 ccgctgaata aagtagacga gatcgcggcg taccatgaca tatgctatga catggggaaa 10260 agcaaagggg agtgcgacgg aaaaatggtc gagtcgcttg atcgaatacc gtatggtgag 10320 atgcctaagt gggggtcaac cgcacgtttc cttatcaatg caaaacgaaa actcggcctc 10380 ggtgttaaaa agccaaaaaa cggaaaaaag ccgtcgagtg aagaaaactg gcaagaagaa 10440 ctagctgatg aattacacaa gccagtaaaa aagaaattca cccgacggcg cgttatagtt 10500 aatcatacag atgagatatg gtgttccgac ttagtcgaga tgcaacagtt tagcaaatgg 10560 aataaagggt ttcgatacct actcatggtt ttagacgtat ttagtaaata tggttggatc 10620 ataccgttaa aagataaaaa aaggtgaaac tgtaactgaa gcattcgaaa caattctcaa 10680 ggaaggaaga aaaccagagt atctatgggt cgataaaggt aaagaattct ataacagaca 10740 cctgaaagac ctactagaga aaaatggtat acaaatgtat tcgactgaga atgaagaaaa 10800 gagcagtgtt tgcgaacgat ggaatagaac aattaaaacc aaaatgtgga aacagtttac 10860 tgttcaaggt aatacgcaat atttagagat gctacctaag attttgaagc agtataacaa 10920 caccaaacac tcaagcatta agatgacgcc cgtagaagct agcaaaaaga agaatgaagg 10980 tttagtatat ttcagtctat atggtaacat ggagacacca aaacaaaagc ctatatttaa 11040 aataggtgat aaggttagga taagtaaata taaacgaaat gtgttcgaca agggttacac 11100 accgaattgg actgaggagg tttttatagt tgataaaata caacacacta atccagtcac 11160 ttacaaaatt aaggatctaa ataatgaaga catacaaggt agtttctacg aacctgaact 11220 actaaaagcc aagcaggatg ttttccgcat cgataaagtc attcggagag attataaaaa 11280 gaagcaagct ttggtgaagt ggaaggggta cagtgacgaa tttaacagtt ggataccatt 11340 cagggattta aacgcactat aaacacttgt agaaaaataa tatagtaagg tatagtatat 11400 gaagtgtgaa tacgtaaaat tgaaggtcac cttatccgac gaaaacctta actctccgac 11460 gtgccctgct tcgggagcac tccatctgga gctcagccat catactattg tcaccgagtg 11520 atgttggagg cagcgataca ctaatggtga caaaagagca acgtcgtcaa ctcactagac 11580 ccaagctcac tgacgctcca acagatgtga tccttgatat tgatcagcta ctggctcagg 11640 tgcatgacta cctccgacca tgtgtrgaat ggcgtaaaaa aggttttaca gaatttcctc 11700 accaagtata gtatakgatg tgcactagtc tagacacctt tatatatgat aacacaaaga 11760 tcgacgtcat caagaagtgc gatgagatat ggctacgggc taaggcagtc gccgacgtgt 11820 tagggtacaa aaatactaga aaagctataa gagaccatgt cgacccagag gacaagatca 11880 ctctgggaga gctcaaacct agggggaacg aatcgttccc ccaagcgata tacattaatg 11940 agtctgggat gtacagcatg atactgagat ccaacatgag cagagcaaga gacttcaaga 12000 ggtgggtcac tagcgaagta ctgccgtctg tgagaaggat agggaggtac gagcgtaaga 12060 ctcgccagat actctctttc agcattgaaa ctgagtatga tctgcataag aaggtcgtca 12120 acttcatcac gaaccgccat ccgagagcca tcttaagtgc atcactgggt gagaaccaag 12180 tgagtagcga tatgagaata agatcatata gtatgggcta tcagaagggc tcaccagact 12240 tgataatcca gaatctgcat aaggactact caggctttgc gatcgagttt aagagcccca 12300 aggggagcgg caggctatcg gacgaccaac aggtgatgct acagagatat aaggacaaca 12360 actacaaggt gctggcaagt aacgactacg atgagattat agaagagctc gtcaagtact 12420 tcgatggggt gagagtccag tgcgcgcgct gctctaggag gttcaagtct gcagacactc 12480 tggggaacca cctgaggtac atccacagac atttatagaa aaaaaggtat agtagtagta 12540 tatatggaag tcaagagagg acgaggacgc ccccctgtgt atgcaactgg ggaggaaaga 12600 acgagatcta taagaggatc aaagactaag tacatgctaa acaaggagtg gtactgtcca 12660 gtgtgtggga acggcaagaa ctacacatta gctggaaaga ctaaccacat caatacgaaa 12720 aagcaccaga ggaaccaaaa cacargcaac ataaccgacg tgatcaccaa gacattctag 12780 aaaaattaaa aacatataga agcatacaat ccgacgggtt cgccacgaac cactcggatt 12840 taaggaaagt gcgttcaaca cttaaaaata aagtatatag tatagtatat atgagcgact 12900 cacagaaaat atctaaccct aatatagata tgaatgagag agaccttaat aaactaagta 12960 agtctgaact catcaaattg ttactaaagc aagagaatac taagccaacc ccagcgccta 13020 gaccaagacc accagtgccc acaccacgca agagcgtcaa gcagatggcg caggagtatg 13080 aggacagcat aataccacca ccaccagagt tccgagacag gccagttcct acacctaggg 13140 ctcgtaggcc agtgccgaca mctagaacta agacagtgca gacgaggcgt gccttgagag 13200 gttacaccat gtcctttgaa attgggataa agaatggtag agacccacta gcgcaactgc 13260 aaagcacggc taaggccacc gaacaccata tcgcaaagac gctagaatct atgaaaggcc 13320 ttaaattcgg ttcagcatta aaggtcacgt tcaagaaaaa agtctggcga cgacctagag 13380 ttgtttaaga ctgcttactt taacagtaca ccccaaacaa tcatcaatag taccgagatc 13440 ggcgaggcat tgcggaacac ccatgagcaa gttctgaata ggatagccca atgggtatct 13500 gagggatctg gctgggttat agaatcagtc gatggccagt atctcaatat cgtaaaatac 13560 cagccgatga gagggtcatc atacatccaa ctaccgggag gactacgagr tagagggttg 13620 gtcaacatga agaatgagga caacgagtgc ttcagatggt gccacatcag acacctaaac 13680 ccacaggata aagaccccca gcgagtcaag aaatctgata aggcatttgt caacgaactg 13740 gactactcag gtgttgagtt tccagtgact gtcaaacact ataataaaat cgagaagcag 13800 aacaggatca acataaatgt attcagctac gatagcgaac aaccgtaccc aatatacgta 13860 tcaaaggaga ggttcgaaga ccatatggag cttttactaa tcactgatgg tagtaaccag 13920 cattacgtac tcatcaaaga cttcaacaaa ttcatgctca accagacgaa acacgaacat 13980 aagaagcact tttgtatgag ctgcctccag tgtttcagct ctgaaagagt actaaccaac 14040 cacgttgaga actgcctcga gattaatggg acacaggcgg tcaagatgcc tgacaaagaa 14100 cacagcacac tcaagttcac aaaccaccac aagcaacagc cggtaccatt ygtcatctac 14160 gccgactttg amgctataac tgaaaagatc catgggtgcc aacctgatga tggtcagtcg 14220 tacactggag cctaccaaaa acataccgac tgtggattcg gctataaagt agtctgcacc 14280 tatgatgaca agtatacaaa gcaaacgcag ctctacagag gygagaaagc tgtgtacaag 14340 ttcatggaga agatgctgga ggaagtcaaa tgctgtaaga acatcatgag gaagcacttc 14400 aataaagcac taacgatgtc gaagcatgat gaggatcaat tccaaaaagc ccaagagtgc 14460 cacatatgca acaaggaata cactaagaag gacactcgag tccgagacca ctgccacata 14520 actggtaagt acagaggctc ggcgcaccaa gagtgtaacc tgaaacttag aatcaatcct 14580 gaggagataa agatacccgt catatttcac aacctaagag gctacgacag ccatttcata 14640 atgcaagaga ttggagccat agtcaagaag cacacatacg tgaacggtaa aggtgaggag 14700 aagcaaatga acatcaacgc tataccgaac aacatggaga agtacatggc cttcatgctc 14760 ggcaaccacc tcacctttmt agacagcttc cagtttatga gctccagctt ggagaaactg 14820 gtaggcaacc tacctaggga gtcattgaaa tacacctctc agaggtttaa aggtaagaga 14880 ctcgacctta tggctagaaa gggagtatac ccatacgact acatggacag cttcgagagg 14940 ttcaacgaca agctaccagc gaaggaggac ttctatagca ccatgtacga ccgacacatc 15000 tcagaggacg attacaaaca tgctagaact gtgtggaaga agttcaatct caaaaccatg 15060 ggcgactacc acgacctata ccttgagtct gacatactac tgctggctga cgtgtttgag 15120 aactttagga agacgtgcct agaatactat aagctagatc catgcaacta cttcacatcc 15180 cccggtctat catgggacgc catgctaaaa atgaccgaca ttaaactgga actcatgaca 15240 gacatcgaca tgttccaatt catcgagaag ggcatgcgcg gtggcatatc atacatagcc 15300 aacagataca gcaaggccaa caataagtac atggaatcat acgacgagac ggcgccctcg 15360 aagtatgtta tgtacttgga tgcaaacaac ttgtacggat gggctatgag tcagtaccta 15420 ccaactggtg gattcagatg gatgacagag aagagaatcg aaaaattgaa cctagctaag 15480 tacagcgaga gtagtaaaaa ggggttgata ctagaagtcg acctagagta ccccaaaagc 15540 cttcacgacc tccacaacga ctacccacta gccgcggaga gagtgaacgt atcaaaggac 15600 atgctgtccg agtactgcga caagatagca acaaaatacg gcatacaaac aggtctagtc 15660 tcaaaactga tcccaacctt aaaagacaaa gagaagtacg tactacacta cagaaacctc 15720 cagctataca cagacctagg cctaaaagta actaaagtcc accgagtctt agagttcgac 15780 caatcaccat ggctaaagca gtatatagac ctcaacactg aaaaacgtaa gaacgccaaa 15840 aactcattcg agaaagactt cttcaaactg atgaacaaca gcgtattcgg aaagactatg 15900 gagaacctac gaaaaagggt agacgtccga ctggtgactg acgagaagaa actactcaaa 15960 ctgacaagca agccctccta tgtgagtagt aagatattca acaaggactt agtggccgtc 16020 cacaaaatca aagagacact gaccctaaac aggccggcct atgtgggcat gtgcatccta 16080 gacctcagca aggtactgat gtacgacttc cactacaact acaccaaaga gaagtacgga 16140 gacaaggcaa ggctactatt caccgataca gacagtctga cctacgagat agaggaagaa 16200 gacgtgtacc aagatttctg gaacgacaaa gacagattcg acaatagtga ctacccaaag 16260 agctccacat acttcaacga aaccaacaag aaagtcatcg gcaagttcaa agacgaggct 16320 gcaggaatcc ccatctgcga gtttgtcgga ctgcgatcca aaatgtacag ctatgtgaaa 16380 agcgaccaat caggaggaaa gacagcaaag ggaatcaaaa agaatgtaat caagagtaat 16440 atcaagcatg aagactataa aaagacatta atggacgaca gacagatgca ccacaaaatg 16500 aagaccatca gaagccaaaa ccataagtta ggaagctacg aaatcaataa agtgtcactc 16560 agytgtttcg acgataaaag gtatatatca aaagacggaa tcaaaagttt agcctacggg 16620 cactataaga tcggacaata accccgatca cccatttgac agatgaacct ttatttgaca 16680 catactggca tccactaatt tggagaaggt ataccatctt aacgcaccga aactatttaa 16740 aaataatttc tagtatagta gtatatgacc gaagtcgcgc gagacgttga aacgaaaacg 16800 gccatctact acgacgacag aagcacgaac accgttgtag acgccgaaac tctagtcaaa 16860 ggtttgaaac accccgtttc atattcggaa aagctgatta taaggaccca aacggcaatg 16920 tcatcaacga caaaccaaac accttcaacg aaaccctatg ctgccgaaac aagtgcgaca 16980 gggcgaagat aaagtcggcc cacagaatga ctccacacta ccacgccgac ggcagcaaaa 17040 gcgaaagtga agataacagt gaagaggaaa gcggaggcca tactcagtag cccgcgggaa 17100 atcccctgat tcgctcctag gaattaaaat actattgcat tgccatgact ctaagcaaac 17160 ctagaataca acaaacacgc ccagacttgc ccgcggggaa tcccctgact ggctcctaag 17220 aattaaaatt ccaagaatgt cacacaacag cataggattg tatcataaaa tgtaacccgc 17280 acacaccgca cggattccac gaaatgaaga aagcatatag ttccagtaat ttattcataa 17340 gctgacacca aaatcttgta tcatatagtc tcaccacaat atgataccat atagtttcac 17400 caaaatcttt tatcatatag tttcaccaaa atatgatacc atatagtttc accaaaatct 17460 tttatcatat agtttcacca aaatgtgata ccatatagtt tcaccaaaat cttttatccc 17520 gtggcttcac caaaatcctt tatcatataa tcatgccaga atatgatacc atacgatggt 17580 gagtagtata gacttggctt ggttcgagca catcccgtag caatgtgctg aaaccgccaa 17640 gtactatact act 17653 // ID hAT5-4_NV repbase; DNA; NEM; 2706 BP. XX AC . XX DT 30-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE Starlet sea anemone hAT5-4_NV autonomous hAT DNA transposon - a DE partial consensus sequence. XX KW hAT; DNA transposon; Transposable Element; 5-bp TSDs; hAT5 group; KW hAT5-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2706 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2706 RA Kapitonov V.V. and Jurka J.; RT "hAT5 - a novel group of autonomous hAT DNA transposons RT characterized by 5-bp target site duplications."; RL Repbase Reports 7(12), 1191-1191 (2007). XX DR [2] (Consensus) XX CC hAT5-4_NV is a young family of hAT DNA transposons and it belongs CC to a novel group of hAT transposons, called hAT5, generating 5-bp CC target site duplications upon their insertions into chromosomal CC DNA. The hAT5 transposase is similar to the standard hAT CC transposase (they share conserved catalytic motifs and converge CC with each other after a few rounds of PSI-BLAST); identified hAT5 CC transposase sequences form a distinctive phylogenetic cluster and CC they are also present in different species, e.g. sea urchin. The CC consensus sequence is incomplete, termini of this transposon are CC not known. The TPase encoding region is corrupted by a few CC mutations. XX SQ Sequence 2706 BP; 847 A; 531 C; 587 G; 741 T; 0 other; gggaaatgcg ttttcaactc ctcttggctt ttagacaaac atttcagttg ttggctgtct 60 tctaaaacag acaagcatag tgcatattgt aaactttgca ataagaaatt cagcattgct 120 accatgggga tatcagcatt gaaatcacat atcgcagcca aatctcacca agaacacatg 180 aaaaaacagg gaaatccaat ctctgcattt ctaaaaccca tgacctctgg tgacccaagt 240 gatacccctt ccccaatcac tccatgcagt cccttgactt cttccatgga aaatgctcca 300 gatggtacaa gcacagatgc tagtcagaat aaggataaaa gatcatagtt tcaacatcta 360 tcttccctgg caaagagggt tactgatgca gagtaattgt gggcatttaa ttgtgtggac 420 tcacactttt ctgctgcctc taacattggg atgaatgctt tattttaaca gatattcagc 480 gatagtgaag ttgtttcatt gtattccatg agtgactcga aatataggta cctggcaaca 540 tttggaatcg ggccatactt ctctaagatg ttgacaaatg aagtgaaagc ttctccagca 600 cgctgcatcc tgtttgacga gtttctcaat gatgaacttc aaaagaaaca acttgatgtt 660 cacgtaagat actggtctga tgaaacttgt aaagttgagt ctaggtacta tacctcttta 720 tttattggtc acggcagagc tacagatata ctacgcagaa gcgacaaaag atctggatgc 780 cccaaaaaca tggcaagttg gtatggatgg tcctaacgtt aatgtgtcat tccataacaa 840 gcttgtgcac cagcgcaaag atctcgacct accacatctc ttggatctcg gaacctgtgg 900 attgcacatt gtccatagag cattccagac aggtgccaaa actactggtt ggaacttaga 960 tcagtacttg atgaaagagt acaagctctt cgaggattcc cctgcacgac gtgaagattt 1020 tgttcaatat actggtacat cagtatttcc atcgaagttt tgcaatcaca ggtaagacat 1080 taaaatgaaa caatggaaca ttagtttaac agtaatagga ttgaatgcat ataaatattg 1140 gcctgttttg tccctgataa tcgctaatat ggtgctatct ttaacacctt atgaaggtag 1200 ttcccatgtt ttgtcccatg atatattctg tgcatggcat ttgtttgaaa tattcatata 1260 aagagtgctt tttttaagca agagtgatct cttatgataa tttcatgcag cttcccagtg 1320 aaagtggtat tgaacagact attcattgct ttgctatact tctcttcttt tcttgcagat 1380 ggctagaaaa tctcagtgtg gccacaaaat ctttggagtt gatacccatt ctaaaggatt 1440 tttgcagcca agccgagcta aagaagacgg agccccaaaa tacacgaggg gtacaatatt 1500 gttaaaagag ctgcatcttc tgacaacttg ctgaaggcca aacacttgtt ttggatttct 1560 gttttgcaag atttccaacc ctttctggtg ttatatcaag cgcataggcc gttaattcca 1620 cttcttgctt caaatttaga gaaactcttg aggaacatta tgagtaggtt tgtaaaggag 1680 aatgtcatga ccagtgcaac gacgtacttg aaacttgcag atgttaatgt ttcatctgca 1740 gaggaagtca agtcagcaaa gtctgtagat gttggtattg caactcaaag agaactggct 1800 acattacgtc acgataggaa gatcacacaa gctcaagaac tggaattcat ggctcaatgt 1860 aaatcacttc ttacacgcac cacagaaaag ctactagaaa agtgtccatt gaagtatcat 1920 atagtgcctt gcttgagatg ccttgatccg caagtcttag caggtcctgt ggcaaaatcg 1980 gcaaagctgt ttgaacgtct gctaaattgt ttgatcaatg ttaagcgagt aaatgagatg 2040 gatgcagata gcttgaagcg agaattccag gtgtttgtga ctgagacgat tcacaggaac 2100 ccgcaaaccc tcctacagtt caaaaactat gacaaagtga aagacgaacg cgtcgatact 2160 ctgctggcaa gccttatgag accgttagat aacttacaca aactttgggg actcgtccag 2220 ggtctgcttg tgctatctca tggtcaagcg agtgttgaac gagggttcag catcaataag 2280 gagatgatga actataattt caaagaacgg tcagttgttg cgcaacgcat catatacagt 2340 catatccaga agtgtggagg cgtgctcaag gtagccatag atcaagatct taggaatgcc 2400 gccaaaaacg cctcatccgt gtactgaaat gagctccgaa agcagcaaca aatggaagag 2460 ggcaaagaaa aggagaaggc aaacagagtt gtcaatgatg agattgttgc ggcgcaaaca 2520 agaaggcgac aattgctgga agattgcatc cacctgaaag agagtgtaga tcgattgatg 2580 atacttgcag agaaagacag ggatcttctt catgtcacta aagcgaacag ttacaagaga 2640 acgataactg atatggagcg aggggcgaac ggtttagatg caaaaattga gggactcaag 2700 aaaaag 2706 // ID DNA-9-36A_NV repbase; DNA; NEM; 105 BP. XX AC . XX DT 21-MAR-2011 (Rel. 16.03, Created) DT 21-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-36A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP257; KW DNA-9-36A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 65-105 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 65-105 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-105 RA Kapitonov V. and Jurka J.; RT "A subfamily of DNA-9-36_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (21-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 105 BP; 21 A; 29 C; 41 G; 14 T; 0 other; tagcctgcgt agcggctcaa gggaggggga cgggggagag ggggcgaggg aagaaaaagg 60 cgtgcccagt ctccctcccc ttcccttgag ccgctacgca ggcta 105 // ID Gypsy-33-LTR_NV repbase; DNA; NEM; 183 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-33_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33-I_NV; KW Gypsy-33-LTR_NV; Gypsy-33_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-183 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-183 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-33_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 498-498 (2007). XX DR [2] (Consensus) XX SQ Sequence 183 BP; 58 A; 26 C; 54 G; 45 T; 0 other; tgtaggattg tggtcaggaa ccgtgaccag tcacgtgtaa gggattacat aacggatgta 60 agggattatg ggtaggagta gaggagccgg agtgctatgt atatatgcga taagagtagg 120 ataataaagc ggatgatcta cgaatattgc cgtcgtttaa agcattcgac ccagaacatt 180 aca 183 // ID CR1-18_NV repbase; DNA; NEM; 3301 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 30-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone CR1-13_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; NVREP340; KW CR1-18_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3301 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3301 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 715-715 (2009). XX DR [2] (Consensus) XX CC This family can be still active (S>99%). XX FH Key Location/Qualifiers FT CDS 91..3162 FT /product="CR1-18_NV_1p" FT /note="endonuclease and reverse transcriptase." FT /translation="MINNPSNVVPVYFCLPILAFWSFLPCYFHLKAVDRGS FT HVATLTSEPVASTGWSYSNQELKTIRKSQPKQRLEPKLWQKLGDLGIRKPF FT RSRRKPRQSRHVCTGLPVVTTVDSTGHPQLSSGCSTNSSSSQTARFPVIPD FT TIIANMQSLLPKLDELYAAIMQFPAGIICLTETWLNESHPDPLIHLPGYLC FT FRNDRTTSRGGGVCTYINSQYPCRRLPEFEDLSIESLWISVRPYRLPRSVS FT TLLIGVIYHPPSNGEMNRQLVDHIDKNCESFLSKHPDGLVVVTGDFNPSST FT GIKAQYVTHKTGLTQIINVLTRDTGILDWCLTNKPKYFQQPLQLSKMGSCD FT HYPILIKPNLSVTNPKAHKSSVWRRNLRRSNLDAFGRWITQFCWNTILSLQ FT TAREKFERFYTVITDAVNTYLPLQRVQVCATNKPWIGTSLCSLIARRQKAL FT TTLGKDSRLYKELRNQVQRECKVCRERYYPNKVAALKESNISRWWQEVKCL FT SGSVVSNEWWHQLMDDSTPSVQILAERFNEFLLGLTSNFAPISQQVTCSGP FT VPPELLITPGKAFKALSRIKVKKSSGPDPVPSVIWKEFAPELSDVVCNLYN FT SSLMEGFVPQELKESIVHPVPKCSPPKTLSEDLRPITLTSQLAKVMEGFAL FT DSLFACVKDKLDPKQFSVSGKSTVLALVYFLHCILESLERGENYVRIFFAD FT FSKGFDLVDHNVLMSELDLLGVNEYLQNWIAAFLTARPQRVKISGHTSSPV FT FPNGGIPQGTKLAPLLFAILVNRLASTWPYRIKYVDDTTIFEVIPRCSPSY FT LPFIANDICNFATERGMRLNPKKCRELVINFLQYQPSPVNALQLMGSVIKR FT VESYKILGVHISSDLSWNKHVDYVVKKANKRLYALRLLKKSGVPVQDLIAI FT YCVLIRSVVEYAGPVWANITGFLVDIVEGIQKRALRIVLPHLRYKEALETS FT GLQSLADRRRELCISLMTSAKELEPLRSVITGGVINNVHGYSLRSGSMNTY FT KHISVTKRFGDFVTYRFL" XX SQ Sequence 3301 BP; 853 A; 843 C; 702 G; 903 T; 0 other; ccaaaatggc tgccacggct tttgtagctc tgtgaatctt gtctctgttt tcatgtgtca 60 ttgctagttg aaggcgtttg actgtcaaag atgattaaca atccatcgaa tgttgtaccg 120 gtatacttct gcctgcctat cctggctttc tggtcgtttc tgccgtgcta tttccacttg 180 aaggccgtcg atcgaggaag ccatgttgct acgttgacat ctgaacccgt tgcatctact 240 ggctggtcgt atagcaacca agaactcaag actataagga aatctcaacc taaacaacgc 300 ttggagccca aattatggca gaaactcggt gatcttggaa ttaggaagcc ctttcgatca 360 cgaagaaagc caagacaaag tcgccatgtt tgcaccggtc ttcctgttgt gacaaccgtc 420 gactccacag ggcacccaca actcagttct ggctgctcca ccaattcttc cagctcgcaa 480 acagcacgct tcccagtcat cccggacact atcatagcga atatgcaatc acttcttccg 540 aagctagacg aattatacgc agccatcatg caatttccag cgggaattat ctgcttaacg 600 gaaacctggc tgaatgagtc tcatcccgat ccattaatcc acctaccagg ttacctgtgt 660 tttagaaatg acaggactac aagtcggggc ggtggagtct gtacctatat caactctcag 720 tacccttgta ggaggttacc agaatttgaa gacctctcca ttgaatcttt atggatcagt 780 gttagaccct atcggcttcc aaggagtgta tccacgctgc ttatcggagt catctaccac 840 cctccttcca atggagagat gaatcgtcaa cttgttgacc atatcgacaa gaactgtgag 900 tctttcctct caaagcaccc cgatggcctt gtagttgtca caggcgattt caatccaagc 960 agcaccggaa ttaaggctca atatgtcact cacaagaccg gcctgactca gataataaat 1020 gtcttgacca gagacaccgg tatactcgat tggtgtctga ccaacaaacc aaagtacttt 1080 cagcaacctt tacagctctc caagatgggt agttgcgatc actacccaat cctaatcaag 1140 cccaacttgt cggttaccaa ccccaaagcc cacaagagct ctgtctggcg acgaaacttg 1200 cggcgcagca acctggacgc ctttggccgc tggatcactc aattttgctg gaataccatc 1260 ttgagtcttc agacggctag ggagaagttt gagcggttct atactgtcat cactgacgct 1320 gtgaacactt atcttccctt gcagagagtt caagtctgtg ccacaaacaa accctggatt 1380 ggcacatcac tttgttcctt gattgctcgc agacagaagg ctcttaccac cctcggtaaa 1440 gactctcgcc tgtacaaaga actcaggaat caagtgcaaa gagagtgtaa agtatgcaga 1500 gaaagatact atcccaacaa agttgctgcg cttaaagagt caaatatttc ccgctggtgg 1560 caggaagtca aatgtctgag tggctctgtt gtctcaaatg agtggtggca ccagctgatg 1620 gatgactcta ccccgtcggt ccagattctt gctgaaagat tcaatgagtt tctccttggt 1680 cttacgtcta atttcgcgcc catcagccag caagttacct gctcggggcc agtcccccct 1740 gaactgctta tcacccctgg aaaggcgttt aaagccctaa gtcgcatcaa agtgaagaag 1800 tcatctggac ctgacccagt ccctagtgtc atatggaagg aatttgcccc tgaactgtct 1860 gatgtcgtct gcaacctgta caattcctca ttgatggaag gctttgttcc ccaagaactg 1920 aaggagtcga ttgtccatcc agtgccaaag tgctcccctc caaagactct gagtgaggac 1980 cttagaccca ttacccttac ttctcagtta gctaaagtta tggagggatt tgcacttgat 2040 tcgctattcg catgcgtcaa ggataagctt gaccctaaac agttctctgt atcagggaag 2100 tctactgtgc tggccctggt gtattttctc cattgcatcc ttgaatcgct tgaaagaggc 2160 gaaaattatg tgcgcatatt ttttgccgac ttttcaaagg gctttgactt agtcgaccat 2220 aacgtcttaa tgtctgagct cgacctcctg ggagtcaacg agtatctcca aaattggatt 2280 gctgcctttc tcacagcccg accacagcgc gtcaaaatca gtggccacac ctcatcgcct 2340 gtgttcccta atgggggcat accacaaggc actaagcttg ctccactatt gtttgctata 2400 cttgtaaaca ggctggcgag cacttggcca tatcgcatta agtatgttga tgacaccacc 2460 atctttgaag tgattcccag gtgctcgcca agttatctgc catttattgc taatgatatt 2520 tgcaattttg ctacggagcg tgggatgagg ctcaacccca aaaagtgtcg ggaattagtc 2580 attaatttcc tgcagtacca gccctcgcca gttaatgccc tgcaactcat gggctccgtg 2640 attaaaaggg ttgaaagcta caaaatcctc ggcgtccaca ttagctcaga tctatcgtgg 2700 aataagcacg tagactatgt agttaagaag gcaaacaaaa ggctctacgc tctccggctc 2760 cttaagaaat ctggagtacc ggtccaggat cttattgcca tctattgtgt actcattaga 2820 tctgttgtgg agtacgcagg tccagtatgg gctaacataa cagggttcct tgtcgacatt 2880 gttgagggca tccaaaagag ggccctccgt atcgttttac cccatctacg atacaaggag 2940 gccttggaaa ccagcgggct ccaaagtctt gctgaccgca ggcgcgagct ttgtatcagt 3000 ctcatgacct ccgctaagga gctagaaccc cttcgatctg taattactgg aggcgtaatt 3060 aataatgtgc atggatactc actaagatcc ggcagtatga atacctacaa acatatttct 3120 gtaactaaac gctttggtga ctttgttact tatcgatttc tgtaatagta taacgctata 3180 tgtgctggcc ctttgcctta attcagtctg taatactgcc atggcaattg aataaaaccc 3240 ctatctatct atctatctat ctatctatct atctatctat ctatctatct atctatctat 3300 c 3301 // ID TE-26_NV repbase; DNA; NEM; 321 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-26_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP397; TE-26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-321 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-321 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-321 RA Kapitonov V. and Jurka J.; RT "A family of TE-26_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX CC The 139-bp 3'-terminus forms a palindrome. XX SQ Sequence 321 BP; 100 A; 65 C; 51 G; 105 T; 0 other; tttattatat ggatagtagt gttttaccgg aaactaaaac actcgtattt tccatatttt 60 cactagtgaa gatatgaaaa agttatgtac cgaaatgtcc cggatgtacg cgcgcgtcaa 120 atcaaaacag ctttcccgcc catttcgatt ttcgattcag tttgtccata taataaaaag 180 aacattacac gatggcttga agatatgaag tttattttct cgtggtaaaa acaatatttt 240 actcgttcgc tgcgctcact catagaatat tgtttccacc actcgaaaat aaacttcata 300 tcttcgcgcc accgtgtaat a 321 // ID Gypsy-24-LTR_NV repbase; DNA; NEM; 182 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-24_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24-I_NV; KW Gypsy-24-LTR_NV; Gypsy-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-182 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-182 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-24_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 480-480 (2007). XX DR [2] (Consensus) XX SQ Sequence 182 BP; 44 A; 41 C; 36 G; 61 T; 0 other; tgtaacgata tccggtttat acaacttccg gtgacgtcac acaccacgtg cgtagacacg 60 cttgtacgag tttcgtagac ttgtagttgt tgttgctttt tgagataaag actaaagtcg 120 tctcaaatgt ctcagtgttc tttctccgtt cttcatcgtt ccttcagcta agaaacgata 180 ca 182 // ID Gypsy-42-I_NV repbase; DNA; NEM; 3991 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-42_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42-I_NV; KW Gypsy-42-LTR_NV; Gypsy-42_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3991 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3991 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-42_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 517-517 (2007). XX DR [2] (Consensus) XX SQ Sequence 3991 BP; 1135 A; 942 C; 1126 G; 788 T; 0 other; tggtggcagc cggtgaacgt acttgcgcta cataatggcc tcgctatttg gactcccacc 60 gccgggtccg ctagaaatcc acgacgcaca ggcatcagac agatggaaaa aattcttgct 120 tgcatggagg agctattcgc tggcgacgga attaagcgat aaatcagagg ccgtacaagt 180 ggcaacgctg ctcacagtca tcggagagga ggcacgggat gtgtactcca ccttcaactg 240 ggatggcgac gacatcaata aaatcgagcc ggtcttgaag aaatttggcg aatattgcga 300 accaagacga aatgtcccgt tcgagcgtta tcggttcaat cggcgggtac aagagccccg 360 agagtcgtac gatcagtaca gaaccgctct caggaaactc gcagacggtt gcgaattcga 420 ctcgataacg ccagaggaga ttttaagaga tcgactgatc ttcgggatca gactccaaag 480 tgcgagaacg cctgttgcga gaatcgaagc ttaaccttgc ccggaccgat gaaatatgca 540 gggcttcgga gagcatgatc gcccaaatta aagtagagga gacgcggcga ccggaacgga 600 gataaataga atggtggaga ctcaattaag ctcaagaaaa cctcgtcgaa aacaacaaca 660 acgaaaggaa tgtagtaatt gtaactacag gcatgcggca aatcgggaat cgtgcccagc 720 gttcggcaag gagtgccgga aatgtggaca atcactttgc gtgaaaatgc cggcagtcgg 780 ttaaagcgct ggaagaagat aatgaaggag aagaagaaat gtaccaggcc ggcgaaatat 840 caacggtcaa gttagatgac tctcagctag tcacagtgca gctagagtct ggcagtttca 900 tacgctttca gcccgacacg ggcaatgcaa tgtggtacct ttaaaggtgt acaaggaagt 960 tctggagaag agaagttgga gaaggtcagg acaaaagaaa catcgctagt agcgtatgga 1020 ggcccgagaa tcaaagtaat tggatgggtg ccactacgcg tgcagaaaaa gggaaaatcc 1080 tacctactgg actgccgtct agtggacaat aacgacattc gtccgatttt agggcaaaag 1140 gcctgcgtaa gaatgaagat tttagagtac cggaacaatg acagactaaa caaaccggac 1200 acctgtgatg cgcctgtcta cgcagtacag ccacaaacgg ctctgggaaa acaggagttt 1260 ctctcccaat tcccaaaggt ttttgaggaa ggcgtgggga gcttaaacgg cgagtacacc 1320 ataaggctag acccggcggt acagccagtg cagcatccac cgagaaggat cgccgtggca 1380 ctaagaccga agcttaaaga gaggctggat gaccttgtta gccaagaagt gattacgccg 1440 gtaacagaac ccacagaatg gatcagctcc cttgtggcga aaaatgggaa actgagagtt 1500 tgcttagatc caaaggatct caatcgcgct atactgagag agaactatca aatgcatggg 1560 gcaaagttct ttacggtttt ggatgttcga aacggatttt ggcatgtccg tctggacgaa 1620 cagtcttcgt acctgaccac ctttcagacc cctttcgggc gctaccggtg gaagcggatg 1680 ccgtttggaa tttcctcggc gcccgaggta ttccagcgca aaatgcacga gctgatagag 1740 ggcctgacag gaatcgaggt ggtggcagat gatttcattg ccgtagggta tggagacagc 1800 ttcgaggaag cgtcacgcga ccatgacagg aacctgacag cattcctgca ccgatgtgac 1860 gagcaaaaca tccggttgaa tccggacaag ataaagttga ggaaacggga agtgctgttc 1920 atagggcatg tcgcgtcgga caagggtctg agagtagatc ccgacaaagt cagagcaatc 1980 acagagatgc ctaaccctac cgacaaggca gcagtacagc gactgttggg tctagcacaa 2040 tatctagcta agttcctccc gcacctgtca gacctgacga agcccttgag ggacttgaca 2100 cagaaagagg ctgactgggt gtgggatagc cctcagcaga ccgcgatgga gaatctaaag 2160 gcagccatca cgaggacacc agtgttgcga tactacagct tggaggacga ggttactctt 2220 caatgcgacg catctcagac aggtttaggg gcaacgctga tgcaaaacgg acagccggtc 2280 gcatatgcct cccgagcctt aacctcagcg gagaccgata tgcacagatc gagaaagagc 2340 tactagcaat tgtctttgcg tgcgattggt ttgacgccta cgtttatggg cggcacaatg 2400 tcaacgtcga gaccgaccac aagcccctgg aacccatatt cgtgaagcct ctagcgtccg 2460 cgccacagcg actgcaacgt atgcttatgc gcttgcagaa atacagccta caagtaaagt 2520 ataaacgagg gaaagacatg tttctcgctg acaccctaag ccgcgcatat cttccagagg 2580 ttaacgcatg cgaatttaca agtgagctag aagaggtcga tcagagagcg ggacttgcag 2640 tcacggcggc gcgatggcag caactgaaac atgcagcggc tgatgatccg gtgcagcagg 2700 tcctaagaga agtcatcctt cgcgggtggc ttgagatgag acgagatgcc ccggaatgtg 2760 ttcatgcgta ctttgatgta aggcatgagc taacccttcg agatgagatg atcttcaaag 2820 ggcaacagct ggtggtgcct acggtctaga gaactgatcg agaaaacaca tgcctcgcat 2880 attggcatag atggttgcat acgcagggcc agggagaccc tgtattggcc tcggatggcc 2940 accgagatca aagagtacgt ggctaaatgc gatatctgcc taacgcatag caagagtcaa 3000 gcaaaagagc cgatgaggcc gcacgagttc gtggcgcggc catggtctaa ggttgcggct 3060 gacctgtgta gtttagacgg acgagtgctg ttagtggtca gtgactacta cagcaattac 3120 attgaggtgg ctcgcattag cgcagtaact tcaagggcag taatcaaaga gttgaaagct 3180 atcttcgcac gatttggaat tcccgaatgt ctggtcacag ataatgggcc tcagttcagt 3240 gcagctgagt ttgcggtatt cgcgaagaca tgggcatttg agcataagac ctcatccccg 3300 acatatgctc aatccaatga taaggcggag aatgccgtac agacagttaa gcgactcttt 3360 aagtgcaaag catctggggt atccgagttc caggctcttc ttgactggcg aaacactccg 3420 acagcaggaa ttggaaccag cccggctgat gggccgtcga tgcaagactc tccttccagt 3480 ggcgggctcg ttcctgcagc cgcaacattc gacagaagaa gagactcgtc ggctgatcgg 3540 agctaaggaa cgacagcgac actactttga ccagcatgct aggcctctac ctccaatcgg 3600 agttggagaa tcggtgcgca agagactccc aggggagaag acctggagtg caggcacatg 3660 tgtagggcaa gctgggccga ggagctacga ggtgaaagtg ggagatggta cctacgaaac 3720 cggcggcagg tgataggtac aggcacgact gaggcgccaa ccatggaaac catcccagcc 3780 aagcacctgt ggcagatgac gaggaagagg accccattgc tacccagccc aatagtctag 3840 caccggcacc gaatgaacca aggagatccc agcgtgctgt tagacccccg gcttggctac 3900 aggactatac agcaaagtga acctggtctg caccgggtcc atttttacac ttacaggact 3960 ttcctacata aacattaagg aaaaggaaag a 3991 // ID piggyBac-N4_NV repbase; DNA; NEM; 1004 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone piggyBac-N4_NV non-autonomous DNA transposon DE - consensus. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW non-autonomous; piggyBac-N4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1004 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1004 RA Kapitonov V.V. and Jurka J.; RT "piggyBac-N4_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 646-646 (2007). XX DR [2] (Consensus) XX SQ Sequence 1004 BP; 249 A; 189 C; 230 G; 336 T; 0 other; ccctttcact cctgggtact tttgagcaac attgtaagaa aaacagactg aaaacagaaa 60 cctccccccc tatttcaagt ccaacactac cagttaagct aagctaccgc tgacccaaga 120 cggtatgcct tgaagtttcc aacaatgcac tgcggtgcct tttctttcta gcgacggcac 180 tgctacagcc tgttgcttac aacagttttg cttgtaattt gcttaaaaat tacagctttt 240 tcacatctgg agagtgcctt aggacatcat gaagtctttt tgggcataat taatgctgtg 300 cttatggatg tttgcacgct gaggttgatt caatgggata attccttgtc tgggcttcac 360 caagtgagaa aggaattttc tggtgaatgg cctcatactc tccaatgtgg gccatctttg 420 ctacccaacc ttattcaaaa attgttttca ggcttattct gggttccttg gacctggaaa 480 tgttttgttt ggcttcgggg caaagagact tataaaaaaa ctgttatgat tctgggggag 540 gagattgccc gcctgtctgt caaggtgttt ccaagactcc catgatgcag tgcaggcatg 600 caaaataggc taaacatggt gactcgcttc taatggaggt tctagcattg attattgtga 660 ctgattgctg taaaatggga cctgacggag cgcaataaag gtatctattt gtgacttgat 720 ctgtgtttgc ttgtctctat ttgtagttcg gaattttgtg tcttttttgg taagaaatgt 780 ttctaagttt aagcatttgt ttacgaattg gtcagaaatc aaggttgata ttttgacaaa 840 agagtcaatt ctattacatt gcttagatgc gcttttgaag gtcgtctatg ccttggatga 900 atctatgagt atccgggtct ggtgatgttt agtttgcatt tttgacgttt tggagttggg 960 cctatatttt acaggcgtct cagggcgtta tggcaatgaa agac 1004 // ID DNA-TA-17_NV repbase; DNA; NEM; 3275 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-17_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3275 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3275 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3275 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-17_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 3275 BP; 986 A; 636 C; 668 G; 984 T; 1 other; gtgcaagaaa atggtgcata aaaagtggcg gatcgttcaa atttatggaa catttatgaa 60 atttggcaca gtgatagaga aactcacact gagcaattct ggatatggac ccacccccaa 120 aaatgtatac ttacagtttt atagaggtgg aattaatttc ccttaaaacc tgaataaaac 180 caatactttt catgttacgg tcacaaaact taacccagtg atggatatta acataaacta 240 cagtttaacg aaaaaataaa ccacgccccc ttgatactta cagttttagg ggtggaataa 300 attatttcct ttaatcagca ttaaacccaa taccatttat tgtacaactt tcaaactcca 360 cataattgtt atactcttta caaaacttca ttcgagatat ggacccacgc ccagatgtga 420 gtacttacag ttatactaga gatgagaggc aaattgctta tatagagtgc cttttcaata 480 caaactgaga gctaagattc catatactaa ctcataatgg tatattgcaa gatattccca 540 accgtatagc cacgccccta ttgtacttac agttatacta gagattacat gaaggaggta 600 tatcgcttat atagagtgcc tttcaatacg aactgcgagc tacaaatcca catacttaat 660 tatattggta tattgcagga tatagtcgag cgtataacca cgcccatata gcacttacag 720 ttatactaga gacagcataa gcgtaatata taacatacat atagcacgct cataatgatc 780 aataaaagca cagaattgtt gttcgacagg agtgatcttg ttgcgtatat aataccacga 840 tgtcacaagt gtacttacag tgctatcrga aatgagataa ttgttatcat tagctgtgaa 900 ttggacttct ccgggtgcaa gtgtggtgaa taattgcgac gttgaagaaa tggcgaggga 960 ggtgttgaga gagtaatcgg agcactgcat attcaaaaat ggagcactat caacctgcca 1020 gtcataacgg taggaagagc cactcccagt acaaatcaaa tgcagaaaaa aggcataact 1080 tcattgtaaa aagttgaaat accaagcatg catactgtat gtgctagttg taaaaagaca 1140 cagacctttt tcgaaatcaa aatcgtctgg gtttttttcg tacgttatgc attatcaaac 1200 ctgttaatat cactttttag tattttcgca aagtactggc tattattaag ctctagggcc 1260 taggacgtat ttgtttcaag actattgagt aggaacgtgc atcatcgatt atttttttat 1320 ttgacttgtt ccatgatcaa ttaattcaga actgcctttg ataatgtctt cactcaaact 1380 tttattcatg tgaccagacc tcgttctttc gtggaaaagg taaaacgagt gcgtggaatg 1440 tctgggaggc gttcccagag gtctcatcgg ctttgactgc cttatcggac cttccgaaca 1500 aggaaacagt tctggcaagc atcggcaccc ttgaacgctt tgttgtcctc ctctactcca 1560 agatgagcca gctctcctcg gtgaacgacg cccggaagga gatggttgcg aggagatccc 1620 gcctatcccg cgggaggaaa tcccgcctac attcgccgcc cttctacagc actaaaagag 1680 agcggcatac taggctggct tttgccgggc gcagtctctc gtggtgcagc ctgtccggcc 1740 gattggggct gggaatcctc cgacaatggc acctggcgtc ctctttggag cctgctccct 1800 ccaatgtcaa cctgtatcaa gctggtaaag tgcggctgcc agcccgataa aggctgcaaa 1860 aggagatgca ggtgcatcaa gacggggctt aaatgcactg ctctgtgcag gtgcggtggg 1920 gactgtgagt ggcaatgaaa cagagacagg taagaattga attgggttct ggaaactaaa 1980 aaaactaaac ggcttactga aacgtttttt tttttatatc aacagtgctt ctccggtgga 2040 cacgggaaca gatgttgagc atgtgggttg aacaacccac atgcttatgg gaccccaccc 2100 cagtaaagta ttcttcagta tattgcctat tcttcgttta ttattggtgt tgcggtgaac 2160 ttaatgatta tcttaaatgc aacagtctct attaatttca gcttcccagc ttttttttaa 2220 aaaaaaaggt tcaatttgtt tcatctcatc tagaactgtt aatgccatat gggcaatgcc 2280 ctgcacgttt tttgtatttt gatagaccaa acatttgtga aactgtgtta gtatgtacaa 2340 ttgtcacgtg cagttcgaat ggaaggacgt tctttctata aactccatcc gtgccatctc 2400 tagaagagct ataagtacta taagggcatg gttatacatt taactatatc ctgcaatata 2460 ccaatatcgg cgagtatatt gatttttagc ttgaaatgcg tattggaagg cacaaaaagg 2520 tggaaaagcg acaatatacc tccattcccg tcatctctag tataactgta aataccatag 2580 gggcgtggta atgcaattga ttatatccgg taatatacca atataagtaa gcatgtggat 2640 ttgtagctca tagctcgtat tgaaaggcaa actatatatg cgattacctc cttcgtgcca 2700 tctctagtat aattgtaagt acaatagggg cgtggctata cggttgggaa tatcttgcaa 2760 tataccatta taagttagta tatggattct tagctctcag tttgtattga aaggcactct 2820 aagcaatatg cctctttcgt atcatctcta gtataactgt aagtactcac atctgggcgt 2880 gggtccatat ctcgaatgaa gttttgtaaa gagtactaca attatgtgga gtttgaaagt 2940 tgtacaataa atagtattgg ttttaatgct gattaaagga aaaaaattat tccaccccta 3000 aaactgtaag tatcaagggg gcgtggttta ttttttcgtt aaactgtagt ttatgttaat 3060 atccatcact gggttaagtt ttgtgaccgt aacatgaaaa gtattggttt tattcaggtt 3120 tttagggaaa ttaattccac ctctataaaa ctgtaagtat acatttttgg gggtgggtcc 3180 atatccagaa ttgctcagtg cgagattctc tatcactgtg ccaaatttca aaaatgttcc 3240 acaaatttga acgatgctgc accattttct tccac 3275 // ID Kolobok-N8_NV repbase; DNA; NEM; 1110 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N9_NV; Kolobok-N8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1110 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 345-345 (2007). XX DR [1] (Consensus) XX CC Kolobok-N8_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N8_NV transposon CC is characterized by 24-bp TIRs and TTAA target site duplications. CC Its ~70-bp termini are similar to these in Kolobok-N7_NV. CC Kolobok-N8_NV elements are ~5% divergent from their consensus CC sequence. XX SQ Sequence 1110 BP; 331 A; 235 C; 209 G; 335 T; 0 other; acacgaaacc gcgctataaa agggcctgtg ccaggcgttt gtcaccttca gttgtcattc 60 accctccgaa ctgacaacag ctcccggtag cgctttgaat aacaatgcga atagagagga 120 agatttttac tctatcctgc ttgaattatt tcaaattaca acaattcata gcataaactc 180 tactaggaat attcaaaagg gtttcacata ccgcagaatg acaataaaca ccggtatatg 240 ttgaattaca attacacgcg ctgttacgcg atctcagtct cgcaatctca cacttagcag 300 ctaaaatatc tacattttag cctataagct acccctgcag aattcctcct ttgaaagtaa 360 acctgtaata taacaaagct tttgtaaaaa aagttgttct aaccacttaa taaaaggatg 420 agcgaatcgc acggtacaag ccgcgattga taaatatact accgttgcgc aagtcacgtt 480 gcagattcta agttgtaaac agacgattta aaagcgaaat aattttaaaa tcttcagcaa 540 aattgctata ctgtaggact taatttctcg tttccattgc tatttttgct gttaacggct 600 aaagattgtc agtagaggca ttgtaactcg acaactcgcc tctcgtgtag cgcattccgt 660 ataggtcagt tgtttcagaa aatcaatgaa taacgtcccg aaattcttca atagctcaac 720 ccgaatcccg agggactatt gcacgcatgt tctatactgt gtagcggctg taaagatatt 780 gtgggctcgt aaacatggcg gagacaagga cgattcatga atggcccgga gaaatcggcg 840 cgtaattcga attcaactca aatcttggtc aaatttttgc gagaatcagc tcctcttgtg 900 cttctagatt tcatatgtga tgtataagtc tactttaagt ttctaaatat gttttatttt 960 cgcctctgaa ttgtacgata tataagcaaa tcgaagaaat ttattttccc gcttcgagtt 1020 ccgttaccac cggccatctt tacttcggat ttgaattcaa aaggtgtcga ttgtgggcgg 1080 tccttaccct tttatagcgc ggtttcgtgt 1110 // ID DIRS-23_NV repbase; DNA; NEM; 4631 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-23_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4631 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4631 RA Kapitonov V.V. and Jurka J.; RT "DIRS-23_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 418-418 (2007). XX DR [2] (Consensus) XX SQ Sequence 4631 BP; 1003 A; 1014 C; 1107 G; 1507 T; 0 other; tacccccctt tgggcaccta gcttaaaggg attaattgct caagccagca tattgtattt 60 cagttatctc tagtcttgat tgctagcaca cgttcacagc ttcactctat aattctttgt 120 tcttttcaac gtttatatat caagctcata ttgttttttc cactgttacg atgccgcgag 180 aaaagaaatg tccaggctgc aagaagccag taaatgatca tgattttggc gtgccaggga 240 aacattgtga cggtcctggg ggcgttcccg aaattcgggg caattctact acacggaacg 300 acgaactgtt gaattcgctc gccgccgctg ttcaaactct cacggccgag gttcaaagtt 360 tgaaggccga tcatgctagc agtcgtcagt cccattcctt gccgccctcc gacgttgctt 420 cgtcgtcgcg atcttctaaa gatgtatcgc cgcgccgtgc gacgacggtt actttgcccg 480 agcttagagc catggatgac ttggccgacg cggcggatcg acgtgtggct catgttctgc 540 ccattgcatc cagtgagtcc gatgaggaag ctgatatggg tgcgctggct tcctctccgt 600 tacggaagcc aaataaagct ggtaagttga agtctggcaa ggaagaccgt ccaacttcag 660 aagttgtagt taaacagttg tggccgcaac gttttctttc cttgactcgt gctagtcagg 720 agattactta cgaacgtctt accatggcag aattcgtggc ggggtatgca cagattctac 780 aattacgaga gatcagttcg ttcgagcgcg ccgaacgaca caaacatttg gtaacgctga 840 tgtaccacgc acagctatac gaatgggagg cggtgcttgc cttccatgga gcggttttgc 900 ttgaaatcga acgtggctta ttgaagtggg gtgattcctt ttcccacctc gaaagcagaa 960 ccctccatgg tcagctactt tcaccgccga aaaagcagtc ttacagttca gggccgacat 1020 tgttttgtag agattatcaa cgcgagaagt gcattcatac caaggatcat tatggttacg 1080 tccgaggcga acgtaaatgg gtaaaacata tttgtgcggc ttgttgggta caatcgagaa 1140 aacaggaatc gcatagagag gattcatctg attgtccgct ttcaggggaa tcaaaaaact 1200 gataaacttc gcccttggtc aagacattgg gggcgttcct tccgttactg ttgcttcatt 1260 tccggatatg tcgttttgtg ctttgaatgc tgatgcttgc tcccagccgc taaaggctgc 1320 agttcctgac tgtcgtggct tttccacggg cgctgattat attcatgatg tgtgttttcc 1380 tcagccggtg gaggctggtg ttctagactg tcgtggtttt tccacggcct ttcctcgtga 1440 ctctcagcag gcgaatgatt tttatttgta cgcacatgag ttagtttttc gttctggtcg 1500 cccgaacttt gtggtttctc gcctgcccgt tccaagttcc ctaaagatca atacttggag 1560 gactttgttg tatgattatg acgaccaaat gatttgtgat ttcctggagt ttggttggcc 1620 ggtgggtttc actggcgata ctgttcctat ttttgatgct cgcactcacc ggggtgcgct 1680 caattttgcg actcaagttt cagagcattt acaacgtgaa gtctcgcttg gtcgtgtcgc 1740 tgggccgttt acggatcctc ccttcggggg tggatttgtt acttcaccgt tgaacacggt 1800 tcccaagcga gattctgaag aacgtagggt aattgtggac ttgagctggc ctaagggcgg 1860 ttcagtaaat gatggtattc cgtgtgatag ttttctggga gatccgttcg tgacttgtta 1920 tcccactata gatgacattg tggaagcgat cgtgcagttt ggcccgggtt gttttctcta 1980 taagagggat ctgcggcagg cgtataggca gtttcctgtg gatcccggcg attaccgttt 2040 acttgggtat atttggaatg gacattatta ctttgacact gttttaacta tggggttacg 2100 ctctgctgct caggcatgtc agcgcgccac ctcagcggta gcttggattc atcgacagca 2160 aggaaaagtt ttatttaatt atttggatga tttcattggg gtttctgagg ctagctctgc 2220 gacttccgat tttgagcagt tggggactct tctctcctct ctgggactga tcgaatctgt 2280 ttccaaagct tgtccgcctt catcgctcat gctgtgtttg ggagtgatgg tagacacgaa 2340 ttcatttacg ttgtcagtta gtcctgagcg gctagcggag ttagagcttc tcttacatga 2400 ttggaggaac cgcaaaactg ctcgcaaacg ggagttacaa tccctagttg gcaaacttgt 2460 gtttgtttca aagtgtgttc gtcagagtcg ggtgtttatc tcgcgcttat taagtctgct 2520 acgaacagtt caatacaatc atcttcacgt taatttaacc gcggaatttc gcaaggatat 2580 tatttggtgg tgtcatttcc tgcgggaata caacggagta tctatgatta aaactacctc 2640 ttggagttct ccgggggaag ttttttctac agacgcttgc ctggttggtt gtggaggcgt 2700 ttgtgacaat gaatatttcc acgcttcatt tccggatgtg gttgttgctc agtccctcga 2760 tataaattgt ttggaacttc tcactattgt ggtggcgctt aagttgtggg gtcaacggtg 2820 gacgggactc cgtttaaccg tgcgctgtga caatcaggtt gctgtcacgg tattgaattc 2880 tggtagaact cgccatccct tcctgaattc ctgtcttcgc gagatttgtt atttgtcagc 2940 gagttatgat tttgagatca gagcggttca cctaccgtct gtgttgaatt gtgattcaga 3000 tttgctttca agatggggct ccgttgcctc cactgttaag gaacgattcc tggagagcgc 3060 tcgttgcgcc aatcgtaggg gtgttacaat ctcatcggac catttcacat tcacgactcc 3120 ttggtaattc gccttccagt cgtaacttat tcgctcgctc tttcttgcag attcctcggc 3180 tttggcctct ctgcaaaagg atctacgaca gacattacaa gctgcttata gcacagggac 3240 atatagtaat ttaaagactc aatttaaggc cttttttcta ttttgcttat attttgactt 3300 gactccatta ccagcagaca tagatacggt ctgtctttat gtacagtttt taagtcgttc 3360 gattgcacca ccttcgattc gtaattattt aagtggggtc aagttattac atcttttcgc 3420 cggttatgac tatgcattta ctaaggattt tagtttatcc ctagccctgc ggggagtttc 3480 ccgtaggata ccacatgtac ctcagagggc tccaccggta actcctagcc ttttattgct 3540 agttgcgcga acagtagatt ttcaacatga tgctaactct tctacattgt attgcgcatt 3600 tctctttgca ttttttctta tggcgcgtat agctaatatc gtaccgcttt ctattaaggc 3660 atttaatcct acccgcgatc tcacacgggg tgatgttttg tgtaacgaac acgggcttat 3720 cgtcacgttt aagcatacaa aaactattca gttcggtcag cgtcgattac acattcctct 3780 gttacgtatt ccaggctcgt tattatgtcc ggtcgctgcc tataacaaca tgattcgcct 3840 ggtacccgct tctgcacgca aaccgctgtt tttattgctt ggtcattcag gcccgtttgc 3900 tttgacgaag tcccgttttg ttaccgaatt tcgtctggcg ctttgctcag tgggggttgc 3960 tcatgctgac tcatatcggg gtcactcatt tcgacgcggc tgtgcctctt gggcgtttaa 4020 ccacggagta ccaggggaat tgatacagtt gtatggtgat tgggctagtg actcttacaa 4080 attgtattta gaatttagta atcaatcaaa attggcgctt gcttcccagc tacgtgcttc 4140 cattcaggcc agtagttagg ccttctgcac tgttttgttg tttggccggt ggtttggtgg 4200 cagagaggtt tattattatt attttagttt ttcatttatc agtttgtagt gattttataa 4260 taaacttctc ttatgccaaa cacaaaacag tgtcagtggt ttatgttggg ttgaggaatt 4320 tacccccctt tgggcaccta gcttaaaggg attaattgct caagccagca tattgtattt 4380 cagttatctc tagtcttgat tgctagcaca cgttcacagc ttcactctat aattctttgt 4440 tcttttcaac gtttatatat caagctcata tttttcccgc cctcccaccc tgggctttgt 4500 gtgaagggtg gcagagaggt ttattattat tattttagtt tttcatttat cagtttgtag 4560 tgattttata ataaacttct cttatgccaa acacaaaaca gtgtcagtgg tttatgttgg 4620 gttgaggaat t 4631 // ID Mariner-N1_NV repbase; DNA; NEM; 443 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-N1_NV non-autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Mariner-N1_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-443 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-443 RA Kapitonov V.V. and Jurka J.; RT "Mariner-N1_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 617-617 (2007). XX DR [2] (Consensus) XX SQ Sequence 443 BP; 167 A; 78 C; 61 G; 136 T; 1 other; cagtacttac ccgcttataa gaacctagaa tttaagaacc tgttagccta aaaataccaa 60 tttagacccc cgttaaataa gaacctattt agcctaaaat ttgaaacagg ttcttatttt 120 aaaaaatgaa cctttaagat ctcccagcaa tgatgaaaga tatatacata yattattaaa 180 tcaatatttt taacataata atgagagttt aaatatattt aaaggggtct tgaccacata 240 ttgtacgaag gccaggccgg tattgacatt tcatcaatct agataccgca cttctaccag 300 ccattagtat attaactttt ctttaaaatt aagaacctat ttaagaacct aagtagccta 360 aaatttaaaa tagtacccgt taaataagaa cctgtttagg ctaacctgga aaaacctagg 420 ttcttataag cgggtaagta ctg 443 // ID Gypsy-50-I_NV repbase; DNA; NEM; 4035 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-50_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50-I_NV; KW Gypsy-50-LTR_NV; Gypsy-50_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4035 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4035 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-50_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 535-535 (2007). XX DR [2] (Consensus) XX SQ Sequence 4035 BP; 1184 A; 745 C; 1135 G; 971 T; 0 other; tattggcgac gtgggtaaac aacggaagag tgagtaatga atttagatgg tttcacgcgg 60 gccccgcttc ccccggtgaa tttagaagcc tcgaatctcg gcgatgagtg gaaacaatgg 120 ctagagtcgt ttcagaacta cagcattgct acaaaactga ataaagaaga ggatgtcgtg 180 caaagagcga cgttactaca tttagccggt gtgggagtac agagattgct gacgggatta 240 ccaggggtta aaaccaagtg cgaagatgtg atcaaggtga tagcagatta ctgcagccct 300 aagaagaata aatgggctga gagatacaag tttcagaaga gggctcagga acgtggtgag 360 agcctggact tatttgtcgc ggaactgcgg gtgttagcgg acacgtatga ctttggggga 420 gcggtggaag aacacatcct cggacaggtg attgagaaat gtgcagacag ctatctacga 480 gaaagactac tacaacaagg tgacgagttg acattgcaca aggctcaatc actaggaagg 540 gcaatagaac aggccaagaa agacgctgga ctactcggtg gacaggaaaa gtcaacaaca 600 tttgatgtga atcaagtgca gaagacttcg acgcagaaaa gggagaagaa atgttatcga 660 tgtggaaata cggatcacat agcaaatgat ctaaagtgca gagcaagggc agctgagtgc 720 catcggtgca agagagttgg atattttcaa aggtgttgta gacaaccaat caaggatgcg 780 aagcaagaaa tgaaggttaa ctcggttgag ccggacgtag cttcaaattg tggacaggag 840 gacattgacc atgagtttgt gcatttcaca aaagaaaagg tgctcagaac cttagtgtta 900 caactaaaat taatggtatt cccatagaga tgatagttga tactggatgc tccaggacat 960 tagttcccaa gtcctggtat caagcgaaga ctgatggaaa gctacaacga gaaatacgtt 1020 gcattgggac attcataggg acaatcaact atgaaggcaa ggagatcaca gaagaaatct 1080 ttgtggtgga tgtgcaaggg ccgccactgc tgggaatgag tgcgataact ggacttaatt 1140 tgatgaaagt ttacgcagtg acaaccgggg atagttcgaa agcggataaa cttgtggacg 1200 aactcagtga tgtgttcagt gaagaacggg agaatttaag ggctatgagt ataaagtgct 1260 agttaatgaa gacgttccac cagtagcaca gcgacagcga gcagtaccgg caatgctgga 1320 aacaaagctt aagatagaaa tggagcggat gcttcaggac ggtgtgatag aagaggcaac 1380 tggtgcatcg tgggatgtca ccgatacatg ttgtctacaa ggacaatggt gaactcaggg 1440 tgtgtgttga tttgcgtgaa gtgaataagg ctgtgatcag ggaaagattt ccaattccgc 1500 ggatacaaca tgtattgagg cagctcaatg gagctcaaat gttcacaaca ttgggcttgc 1560 gcaaggcata ttggcaattg aagttagcag aggagtcacg tgagatcacc gcatttatgg 1620 ctgcaggcaa ggtgtatcgg ttcacgagac tgccgttcgg gctagcctcg gcgcctgagg 1680 catatcagaa gatgatgagt atcatctgcg gagggttacc aggtgtgttg acatatttcg 1740 atgatgttgt gatttacgga aacactgagg cagaacactg ggacaatcta aggcgagggt 1800 tgagtgtctt tcaagaggct ggtctcaaac tcaatgcatc gaagtgtatc attggagtat 1860 cagagttgaa gttcttgggt cacgtcatct cggatgtggg ggtgaagcca gatcctgaaa 1920 aggtgaaagc tatcgttgat gccccaacac ccaagaatgt tgcagagctg agatcatttc 1980 ttgacagtat tacgtatttg tggcagtatg tcgacaattt agcaactgtg atagcacctc 2040 tacggaagct tatacagaag ggggtagctt ggcactggtc acgacaggaa tctgaagcat 2100 attcagcagt aaaggaaatg cttgtccggg cgccatgtct tgcccattac tcaatggaag 2160 ctgaaacaaa gttaatagtg gatgcaagcc catacggtct aggggctgtg ctgatgcagc 2220 gacatggtcc ggaattcaag ccagtggcgt atgcgtcacg tggactgact gatgttgaga 2280 agagatacgc acagattgaa cgggaggcgt taggagtgct gtttggattg caaaggatgc 2340 atacgtatgt gtatggacgt cacatcacgg cggtgacgga tcataagcca ttgccggctg 2400 tgtttactta ggcatcacaa tccattaggc tggagcgcat tgcattgaga gctcagaact 2460 atgactttgt gttgtcatat gagccagggg caagtaatgt tgcagatgga tggtcacgac 2520 tgccgcaaac cccagtttgg ggccatggga ctttatgaag aacatgtctg ttacttgcat 2580 gtgatctgga ttttctgaca cttgaggaaa ttgcggaagc tggaaaggaa gacagcaaac 2640 tgcaggatgt ggtggagtcc ataaatacgg gatggactac ctccacagta cagtcaaaga 2700 gatgggctca catgaaggat gaattgtcat atgcgcaggg agtgttgtgg cgtgggcgcc 2760 gtgcttatgt acctcagaaa ttgcgtagaa aggcccttca tgtggctcat gccgcacacc 2820 aagaaatggt caggtcgaaa cagagattac gggaaagtct gttttggcat aacatggatg 2880 gagaggtcga ggaattttgt cggaactgcg aaacttgcgt tcgcctgcaa ccattgagga 2940 aggatacacc tgtccaatca acccctcttc cacaacggtg ctgggacaag tgtgccttgg 3000 atctggttgg tccatttcca ggtcagattt acattttgac acttgtggat tataagagta 3060 agtggccaga ggctgtaatc ctacacagtc tgtcatccaa gagtatcatc aaagctctgg 3120 ttgatatttt ctttcgattt ggaaatccaa aggaagttgt gactgataat ggtagtcaat 3180 ttatttcggg tgaatttgaa gattttctga aatcgaaggg cattgcgcac tcacgttcat 3240 ctccctatta tcctaaggct aatggccagg ttgaacgatt tcatagatac ctaggatatg 3300 gactgagagc cgcagaaata gatggaatat catggatgga tgcactgcca ggcatcttac 3360 aggtttatcg agcgactccc catgccagga caggtgtcac gccagcaaag ttgttgttaa 3420 accgggagat tgtgacaaat cttccttgtg tccaggacac agagacggtg aatcttgagg 3480 aacggtatgg acaatatcag cagaagctgc gtgattatgc tgaaaataga aggggtgcta 3540 taccacatga cttgtcagtg ggtgacatcg tgtttgtggc aaatatgaac agatcaaaac 3600 ttgatccaag gtatctggga gatcgacatg tgatcttaag acagaagggg gatggagcct 3660 ttgatgttgt caatgtcaac tcaggcaaac tctctgttag gaatgcaaag tacctgagga 3720 aagcaccaac acatcaggta aatctgcccg cgctgttgac agaaaatggt gctgttgcgc 3780 aacaatcagt gaccccagag ggtctagaaa accacgactt attaacggga gactctggga 3840 gggaggtctc aacggagaag gctgtgcagt ctgagagaga agttgaccct cagccaataa 3900 cggaactgaa atgtcggcgt tccactaggg aaccaaaacc aaacgtttat tcagaatatt 3960 attattattc ttaggacttg gacacttagc agtcagttaa ctgatgtgtc atttgcgttt 4020 tttgttttgg aggga 4035 // ID DNA-TA-9A_NV repbase; DNA; NEM; 258 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-9A_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-9A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-258 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-258 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-258 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-9A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 258 BP; 74 A; 49 C; 52 G; 83 T; 0 other; cacctatttc aaataaggtt gcactcgaga atccatgtgt cgtaacccgc ggtggttcat 60 gggtagcgta taaacggctg aatccttgta tctgaaagct atgtgaatgt tcataagaac 120 ataaacaaga attctacagc ttttgaaacc tggatttgta ttttatttac gcttatttgc 180 ttatttactt gatacccatg aagcactgcg ggttacgata cacagattct ccgagtgcaa 240 ccttatttga aataggtg 258 // ID Troyka-1-LTR_NV repbase; DNA; NEM; 159 BP. XX AC . XX DT 29-APR-2008 (Rel. 13.04, Created) DT 29-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Troyka-1_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Troyka group; KW Troyka-1-I_NV; Troyka-1-LTR_NV; Troyka-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-159 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-159 RA Kapitonov V.V. and Jurka J.; RT "Troyka - a distinctive group of gypsy-like LTR retrotransposons RT inducing 3-bp target-site duplications."; RL Repbase Reports 8(4), 513-513 (2008). XX DR [2] (Consensus) XX SQ Sequence 159 BP; 25 A; 39 C; 35 G; 60 T; 0 other; cgccagtacc ggtcagcggt acttagttat gttacgttca ccaaatcccg ccttctctcc 60 gccatcttgt ttttgctgtg ttacgatact ggctttggtt ctctgttgat taaagcgttt 120 ccaagttgtg tcctagtttg tggtcttatt caactggcg 159 // ID DNA-9_NV repbase; DNA; NEM; 199 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-9_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-199 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-199 RA Kapitonov V. and Jurka J.; RT "DNA-9_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 409-409 (2008). XX DR [2] (Consensus) XX CC Target site duplications have not been verified: TTAA or TA. CC The genome contains ~1000 copies of DNA-9_NV. The consensus CC contains CC 50-bp TIRs. XX SQ Sequence 199 BP; 54 A; 48 C; 47 G; 50 T; 0 other; ttaaggctga tttagacagc acgatttagt cgtatgcgac ttgcccgcga cacctctaca 60 actcgagtcg tagagtgtaa atcagcctac gactccgcta cgatgctcga ctacgaaagt 120 cgtagtgtgt aattcagggc taagacatgt cgtaggcagg tcgcatacga ctaaatcgtg 180 ctgtctaaat cagccttaa 199 // ID CR1-8_NV repbase; DNA; NEM; 3701 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-8_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3701 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3701 RA Kapitonov V.V. and Jurka J.; RT "CR1-8_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 402-402 (2007). XX DR [2] (Consensus) XX SQ Sequence 3701 BP; 1199 A; 729 C; 721 G; 1052 T; 0 other; tacagcacgt aaaatggcgg caacgggact ttgggctccg ctcttatttt tacttttcgg 60 caccttatca atgtctaaat tgaattcttc tacacaaaat tcaaatttaa acacatgggg 120 aatcaaccaa acgaactgta tgccgatgaa attattggat attgctccat tactgagaaa 180 tgaagttggc tacggcgaac tcaaccgggc aaagaaactg cgaataactt atcgctttgg 240 ccgaactggt ccttcgcacc tagttatgct gttattaata cttgggggtg atgtcgaatt 300 gaaccctgga gataaatgtg gtatctgttc taaatcaata aagatgaacc aagcgggaat 360 tcagtgtgac caatgtgact tctggtttca tgccgacact tgctgtaaca tatcgccagc 420 catgtttagc atattggcaa acagttcatg cacatggatt tgtccacaat gcgggttacc 480 aaacttgtca gactcattct ttgacagtac tatggattcg ctcatctcgt caaactactt 540 tgaaccgcta agccaagatg gttccgccat atcccaaata acaaatcaag tcaaagtaca 600 aactaggagc aaaatgaaac cagtcaagcg gaggaattta acatgtttgg ttgtaaactg 660 tcgaagtgta aagaacaaga ttgcagacat cgctgtagta atcaatgaac accaacctga 720 tatcgtgttt ggaaacgaat cctggctaaa accggatatc agtagtgcag aagtttttcc 780 cgagaattat aagatcctga ggaaagacag agacaacaat cgcggcggtg gagttttcca 840 ggcagtaaag aatgacttaa taattactca tcgccctgat tgggattctg attgcgagat 900 tatttggtct caatgtcaat tagccggaac aagaagtgcg aaatccattt attttgggtc 960 ctactatcga ccaaataaat ctgacattga aagtctcgac gagctaaatt catcactgtt 1020 gaaaatggga actactttgc ataagaacaa tgtgattctg gccggagatt tcaatgcccc 1080 agatattgac tgggtgaacc cagaaaatcc agataaatta acctcagcat ccaagaggct 1140 cctagacatt actgatgacc acgatcttaa ccagtttgtc aaagaaccaa ctagaaggaa 1200 tggaaacaca caaaacatct tggatctagt gttatcaaat aataaggata ttattagagg 1260 tgtcaaagtc atcgatggta taagcgacca tgatattgtg ctgtttacag taaagttagc 1320 ttgccagcga aaacgaaatg tgaagcgtaa ggtctatatt aagaaaaagg ctgattccga 1380 tcgtattaaa caagaacttc ataatttgct gcctacgatc ctagaattga attcaaacac 1440 taattctgtt gacaagatgt gggatgaatt cgaaagaaat atccaccgca taatggacac 1500 ttgcatacct cataaaacga ctagttcgag atacaacctc ccctggttta accgtgctct 1560 tagaaggcag gtgagagcta aacaacggct gtataacaag gctaaaaagt caggaaatcc 1620 tactcactgg aatgaatttc gtatcgccag aaaacgtctg caaaagaact tgaaatctgc 1680 cagagaaact tacatttccg attttcttgg agatgcaatt gaggaaaacc caaagcgctt 1740 ctggtcgtac attaagcaat tgaaaaacga cgatcctggt gtcgcagact ttaaagtgga 1800 tgataggatt atcagtgatg gccaattgaa atcagaactc ctgagcaagc agttttgtag 1860 tgtttttact gtagaagacc tgactgatat tccttctgtt ggtactgacc caaaacaaaa 1920 tatcagcgcc ctcaccatta caattccagg cgttgtaaaa cagttacaat cattgaaacc 1980 aaacaaggcg agtggtccgg acgaaatacc cccatggttt cttaaggaat atgctctgga 2040 aattggtcct atattaacat ctatttatca aacttcgatc gacactggac ttgtaccctc 2100 taggtggaaa catgctaatg tttgtggtgt gtataagaat ggagaaaaat cagatcctgc 2160 aaattataga cccatttctt taacttgcat tgcatcaaaa gttctagagc atattatcca 2220 cagtcatgtg atgaagcatt tacagcatta cggaattctc actgatgtac agcatggctt 2280 tagagctaaa cgatcaacag taacccagct aattctgaca atccatgaca tggccaaggc 2340 cattcaagaa aataagtcta tccatgcggc agtgctagat tttagcaaag catttgataa 2400 agttccccac gagcgtctta tcaagaaatt acaatactat ggcatccatg gtcccttgct 2460 gtattggttt atgtcgtttc ttaggaaccg tacccagact gttgtctgcg atggtaaacg 2520 atcctgcccc tcactagtaa catcaggggt ccctcagggg acagtgttag gacccttgtt 2580 attcttattg tatgtgaacg atctgcctga caatttgaag tcttcaataa gactcttcgc 2640 tgacgacgcc ctgttatacg gtgtgattgt aaacgaagaa gatggtgacc agcttcagga 2700 agatttaaag agattagaaa tgtggcaaag caaatggcaa atggtattta atccttccaa 2760 gtgtaagacc atctgcatat ccaataagaa gatcccacca cagaggtcat atgttttctg 2820 cggggtacac ttagagcagg tccaatctat tacgtatcta ggtgtcatcc taaatgatga 2880 cttaaagtgg tcaaaacatg ttaaatcaac ttcaggaaaa gcaagtaaag tcatgggcat 2940 gataaaaagg aacttctgga actgccccca aagagtaaaa gttactgctt acacagcaat 3000 agttcgtcct atgttagaat atgcaagcgc cgcctgggac cctcatctcc agaaggacat 3060 cgcctccctc gagaaagttc agaggaaagc agcacgattc tgccttagaa attacatccc 3120 tactgcaagt gtcaccgaaa tgctaggtga tctccagtgg tccaccttgg agttaagacg 3180 aacaatggca cgacttaccc tcctttacaa attgagtcga ggccaaattg acattgacac 3240 aagcatgtat ctccggccac accaagatct cagaactaga aatagtcata attttaaata 3300 ttatcaagaa aaagctacaa agaataagta tttttattct tttttccccc gaacgataag 3360 acattggaac actttaccta atgaacttgt cgagctaggc tcaatcgaac attttaagcg 3420 tgacctcgaa atctatctta ataataataa gaattgaatt ttaattttat aattttattt 3480 ctatatatta ttgaattgta ttattgaatt ttctttacat tatttaatat tttatatatt 3540 ctatatatac ttagtaccta tccatgtata tatgtatata tttttattta cttatctcct 3600 tatttattta tttatatgta aatactttta tttaaggttg gtgtgatatc gcaagatttt 3660 taccgactta ataaatgtag atgtagatgt agatgtagat g 3701 // ID DNA-0-2_NV repbase; DNA; NEM; 175 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-0-2_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 0-bp TSD; KW NVREP43; DNA-0-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-175 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-175 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-175 RA Kapitonov V. and Jurka J.; RT "A family of DNA-0-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP43 unclassified CC DNA transposon. It is a young family: copies are 96% identical to CC the consensus. It seems that this transposon is inserted in the CC AATT target site without any target site duplications: CC AA-transposon-TT. XX SQ Sequence 175 BP; 43 A; 46 C; 45 G; 41 T; 0 other; taggccattc cagctataag tttgcgcgcg cataaccata gaaacctacc tcaactacca 60 gaatgcagcg cgcgcttttt taagcttaca tcaaacgaag cgcgcgctgc atgccggtag 120 ttgaggtagg ttcccatggt gagtgcgcgc gcatgcttat agctggaatg gccta 175 // ID TE-22_NV repbase; DNA; NEM; 963 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-22_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP209; TE-22_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-963 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-963 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-963 RA Kapitonov V. and Jurka J.; RT "A family of TE-22-NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC It contains a ~80-bp palindrome at the 3' terminal part. XX SQ Sequence 963 BP; 293 A; 185 C; 174 G; 311 T; 0 other; ttattacatg attgacacct tttccattgt tcttgcaagt cctttatttc actaaaatac 60 ctatgaataa tttacaatct taaagaacgg ggagggcttg atgtatcagc agggaaaaag 120 tggggtttaa tatgaactca ttaaatatga atgaggttaa taactagaat actaatgagg 180 aggagtaggt taaaaactag atattaaccg tgaatactaa tgaaggacca tcatattaaa 240 ccttgagtag aaatgagcaa aaaacaccac tttttcgcca cagatttgat aacaagaacg 300 attgaatatt aacaatgcat cgatttaatt gtcatgaaag caaaatttgt atttgtaacc 360 ctcgaaattc aacaataagt tcagccaaat ttttatgtgc aattttggaa aattattcca 420 ccagcaaagt taggctgtgg tgtggctatc tgaggcgtct actcactcgt tccgcttgtt 480 cattgtcgtc gacattacag ttcttgaaaa tagatatttg gcgtaataaa aataagtcgc 540 tcttcttcgc tgtcagtgag ctccattctc gcagcgtgct cacactgaaa ctccgagtta 600 cgaaaatttt gcaattcaac tccacctttg ggaattgagt ccgtgcatgg agcagccccg 660 ctctgtctaa atgttaattt tgattgtgta cagtattgat ctaatgagct tttcaaattt 720 gtgcaatcaa ccaccaactc tcctgggttt tcttgcaggt caataataac ctgaaccttg 780 ttttttttcc aaaaaagtca actattattg agttttgtct cttttccccc agtttaaatt 840 gttatttact aggtatagat catgtaataa gccagttaaa tacctcgggc gtcggcagtt 900 cgccgtataa cagctggctt atacggcgaa ctgcctccgt cctcggtatt taacccttac 960 ata 963 // ID TE-16_NV repbase; DNA; NEM; 948 BP. XX AC . XX DT 15-MAR-2011 (Rel. 16.03, Created) DT 15-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-16_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP94; TE-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-948 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-948 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-948 RA Kapitonov V. and Jurka J.; RT "A family of TE-16_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (15-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 948 BP; 326 A; 179 C; 172 G; 271 T; 0 other; aaaaataggc ccgtaaaacg tgcatgtagc tactgcagca agtatttaca actgtaatgt 60 atcatatatc tctaggttat ttcttagtat aatcatacta taaaaagtat tgatgaacgg 120 tataagactc ccaaggatta aaaaaaaaag aaaaaaattc agtggggagg actcgaaccc 180 gtggccttat gcaacctacg gactccgatc actgacctaa accacttagc cacgaagcca 240 acgccataaa atgggatact aaaaataatc ttattagtgc ttgtattgaa ccgttcgaaa 300 agacacgtcg agcatgtcga attccagtta ctttttcttt cacaaagatg aaatacctgc 360 tacaattgat cacattactg ttgtacaata tgtattttgc ataataatta aaaagtgcaa 420 aatcatcatt cgataagtaa atttgcgggg gcatgttttt gtacgaaata atatgtttga 480 acctacagag aacctcaata aagctttgca acttgattta atgtcaaaag gaatcggata 540 cgggcgaaaa aacctgagct taaatactcg aaatgaccaa atgagagcgt gtttacatga 600 gctcgtgtgt ttcggcacgt attgcaaact ctttataaat caataacttg acgtaaagtt 660 tgaacgatca taactcggaa tgtgaatgga atgcagccgc gttcgagttt atcaaaccaa 720 gctgccatag aagcgaatat gtaagaattg tttaacaaac cccaaaatct tttgattatt 780 tagatatttt cttctttata aagtgattct aggctggcgc ttcgtaacga tcatatcccg 840 aagtgtatcc gaggtcaaat tttcccagca aaccccgcgg caaatcttac tttttttttc 900 gacgtgatga catagtagct actcgcacat gcgcagtagc tacaaaaa 948 // ID DNA-2-10_NV repbase; DNA; NEM; 4437 BP. XX AC . XX DT 24-MAR-2011 (Rel. 16.03, Created) DT 24-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-2-10_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 2-bp TSD; KW NVREP500; DNA-2-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 2-888 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 2-888 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-4437 RA Kapitonov V. and Jurka J.; RT "A family of DNA-2-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 98% identical to the consensus. A 5'-terminal portion CC of it was reported originally as the unclassified NVREP500 CC transposable element [1,2]. This transposon shares similar CC termini with DNA-2-1_NV (5'-CCC and GGG-3'). They both belong to CC the same superfamily, which is not known yet. It can be a novel CC superfamily. The DNA-2-10_NV consensus sequence codes for a short CC protein, with XP_001625076.1 GenBank protein as the best CC predicted example. However, this protein is not similar to any CC other proteins (its coded by this transposon copies only). CC Therefore, it is preliminary to view it as putative transposase. XX SQ Sequence 4437 BP; 1355 A; 810 C; 872 G; 1399 T; 1 other; cccgtgcgaa atgaaaattc actttttgcg ataatagtcg agtttctgtg atatcctgga 60 atatctcaga aaatcgcaat aaatccaaat gaagaaaaaa aggtgcgaga tcacactttg 120 tgaaattcaa agatatcttt gaatatcgca acgacgcaaa agacatgaat agctcgtttg 180 cgatgttcta cgattttcca tgatatcgta ttaggcgagt tcgttccggc ttgagaaaag 240 aaactagtgc aaaagaattt gatacgcatg ggtcgacctt tggatattct gcgatttttt 300 ttcaacattt aaaattaact gtattaaaat tatccgaatt tgaagcactg ttaagttatg 360 catgacattt ctaaaacgca tagttttaaa gcggcttata aaacaataga aataaaacaa 420 aaacagaaaa agcaataaac aacatttgac aaattaaatg aataaaactc cttctaaaaa 480 tataaataca gtggaacccc ggacaccctc gggactttca taagtctccg tatcatcggg 540 gtgtccgtat taagcgggct ttgttttgtt ttacttcaca gttaaacgac ttcgtcttct 600 ggaagaggcg acttgaaata agaagtcacg tgacttctta gttcaagtgt aatttttcaa 660 aaagtatcat aaattgcacg agcccgtagg gcgaatttga gactctattt aaagcacacg 720 agcgcaatta cgaatcgtat gatcacttat aaataacaca caaattagta aagtcaagtt 780 tttgtttgaa acacagtaaa acagcgcgct tttttcaaaa actggtgtga ttcgtccgtg 840 gaattggaca ttgaatctca aaatgatcat aatatgtttt tttgtttgtt ttaaacgcga 900 tcccctgata gaatagaata gccatagaat tgctctgtca tatttttttg ctaattaaca 960 cccgagtgtt ttttgcccag ttatattttt gcttattttt atcacccgat gagtgtttct 1020 gtcccgtcaa attttgcctt ttttcgctaa ttgttcactc ggttatttcc tccctctgat 1080 tgatgttgcg ctatatcctt cgaggttcac gtgggtaaag gtcagttatt aagaaactca 1140 taaataatca tatagaacca aattaattcc ggcccgctgt agacttatat caacattgtg 1200 aatcaagccc ttaaatgata caaacttttg cattttgctt ttattgttgt cattcttctg 1260 acaggtattg ggattagttg atcgaagtgt tacctggaat gccgagccta cgacgctccc 1320 cgtggagatc gatgctcaaa aagcatcgat ctccacaggg gccggggtca aaaattccgt 1380 tgttaagagc gtgcggcttg ttatgacact atcttacgtt ctgtaatcaa catcacccaa 1440 tcagaatccg ctattttgca tacgtcattc accccttgct ggctgcctgg gatgtcgccg 1500 acttgtactg gttttcgttg gattgtaccg gttgcatttt cttagcgaat ctccgtgatt 1560 ttagggaatt ttatcgaatt ttagtgatca aatcaaaatg acctccaaga aatttgttgt 1620 tgtggagtgg ctgaacaacg cagaggatcg ttgcgagtta acagttctca ggggaagtga 1680 agttttgcgc cagggtggtt tggtatcggt ggtattcatt gcattgcagc agataacaca 1740 ccaagacttt acgaggcaga agtgttgcaa aacttcggta agtcgaagtt aggcttcttt 1800 gtttttatcg ttttacttta taaaatagag accttacgca aggacgtcct gacagcgcat 1860 gtagaacgcg aaaataggaa aatgccgttc tagatttgcc gtcgcggacg acacgccgtg 1920 ttgtgtgagc agttcgtgag cgcgcgcgcc attcttgatg ccgtcccgtt cttgcgtaag 1980 gtctctaata taataataga actaagcaac ggtagcgcag agaatatttc gggtattcag 2040 tctgagttcc tacggtattt ctcctcatgc tcacattcgc attggctttt gtttcttgag 2100 gaacgtcgat gctattatct tttgcggcat tgtctggctc gattttggat ttctttcctc 2160 cgtgatttgt aaatactctt gcttttggtg gcggacgttt ggaagcacaa gcagctttac 2220 agttctaaac tacggagtac attcttataa aagcatgaag tatttgaacc cagggcgacg 2280 gtagacctcg acggcgtttc gttctatttt gtaacgcgcc gtaagaagta agagcgtgca 2340 gcacctctgt attatgactt cagtgctaaa actcggagca atttcagaat aatatctcaa 2400 cttgcagttt ttttatttgg atttcagact cacagcgcaa ggcaagcagt ttgaaaacga 2460 gcttcttgag ggaggcaacg acagcgttga ccgaggtaac attataagaa taggaaaatc 2520 cacagaatat taaatgcatt cttcgcatcc cttacgtgaa tgtttgtgtt agttaattta 2580 ccttcacaca attgataata ctttgctaaa atagtatatt agtgttaatg taatgttatw 2640 tacctagaag taacgtaaag taaacactta aggatactgt agacccgggc ggtaattacc 2700 ccgatcgtcc cggcaaaacg cgcttaattt taagtgcttt tgtctggtcc aaagtgctta 2760 aacttaaaca agaggtaaaa aacctgaaaa gaaaactcaa ggtgagttta caccgtgtga 2820 ttatgctgaa gttgcaatac ttatgacaaa aacgaaatgg ttgttgttgg ttaaacggcg 2880 gcttcgatat tctgaatcca ctccctggat atgaggaatt tggctctcaa acataggaaa 2940 tatttaggca caaattcaaa ttatgtcatt cggtactttt ctcgtgcccg gcctggattt 3000 tatgattttg ttaattatgt atcatatatt agtagccgaa tgcagtgaat ataacactat 3060 cagcaagtag ttttggattt tttaaaggct gtgactgtgc ggtttttgca cattgtaata 3120 gtcctctccg ctgttatcac ataaagaata ttaattgttc tttttttgta ttttttatag 3180 gtttacaaag atgttcctgc agaggatcag cccagtccag tggtacgtcg ataaaacatc 3240 aaacaaacaa tataaccgga acagagaact cgtatagact atatacatgc ctgattgctt 3300 atacaccgat tttagctgtt ttcaattaat tgttcaattt attctttaca gtcacaacaa 3360 aagcagaaaa ttaaatatct gtcaaagccc ctggaagggg tgaagaggct cctgtcagac 3420 ctctttaccg aagaagagct catgcggtgc acactgaagg ggaagggaag gtccagaggg 3480 atgccctgga ccagcaacaa gatgcagatg atttatggta attcacaaca gtgcgagaaa 3540 tgcagaaagg tatcacttac ttaactgcaa ctaccattat ttttgcaggt gcaatgaggg 3600 gaaattacgg aatgactgat gagaaaatgg accagctgat tagaaatcag caaaaatcct 3660 taaaagacaa aacccaaaaa gtcttcagta aagctaagtg aaatgtccat tgttggtgta 3720 aaatgttcgc tttagtaggt tttttaatca tagagatatt ttagcttgcc ttgcactttt 3780 tgttgtatac caactctttg tcgaatttgg ttttgtcttt taacgatttt tgctgatttc 3840 tataacgtta tagaagtcac tgttcacgtt gtatccgaaa attataaagt tgattatcaa 3900 attttgagat aattgtaaat ttgttctgta ttctaaaaat aaaattattt gctggaaaat 3960 attgctagct atttgtaata aattaccgga tatccaagaa aagcgtataa tattctgcaa 4020 aatgacaata tgtcaataac aaacctcaat ttccttcaat tccgaaaaat ctaataatat 4080 ccgattatgc attcactaaa atcaaagaaa atccaatatt gtcaaagaat atcgttcttt 4140 atcgcaaaag gaacaacgca tctatgcatt ccctgtcaca ttaatgcata ttccaaaaaa 4200 tcgcattata tccaattgga tattccagaa tatcgtagaa aatcctgttt aaagtaagac 4260 tatgcctttt gagatatcct agaatatcct ggaatatcgg tccaaattta ccgtgaaaat 4320 tcacaccttg tatctagaat atcctaggaa atcgcaggat gttctaagat gaatatcgtg 4380 agatattcaa ggatattaca gaaagtcttg gaatatccca gtttcatttc gcacggg 4437 // ID DNA-5-2_NV repbase; DNA; NEM; 334 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-2_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-334 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-334 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-334 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 334 BP; 85 A; 103 C; 77 G; 69 T; 0 other; caggcccgta cccagggggg gggggtgcag ggggtgcgaa cgcacccccc ccccccccaa 60 caacggccga aggtccactt tcggttctca atagacgtgc tatttgtaga caaaactata 120 aagcataagc tagatcactc tggtatgtag ccaaatccga caataaacgt cccgtggaga 180 tactgcaaag gcataaaaaa atcccttttt gttctttcgg gggtggtcag atttttatca 240 gagaactccc cccccccccc cccacggaaa aattaggtcc actttttcgg atttcgcacc 300 ccccccccca agaaaaatcc tgggtacggg cctg 334 // ID DNA-7-20_NV repbase; DNA; NEM; 915 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-20_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW DNA-7-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-915 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-20_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [1] (Consensus) XX CC Copies are 88-97% identical to the consensus. It shares common CC termini with DNA-7-19_NV. XX SQ Sequence 915 BP; 297 A; 178 C; 173 G; 267 T; 0 other; cccggcgtaa ttaatcgatg aaaccgataa tcgatgaaaa tcgatatcaa tcgaaatcaa 60 tcgatgctaa tcaatcgatt aatattggaa atcgatggtt aatcgatgat ctgcaaattt 120 gtgacctttc atcgattagt aatcgatgat ggtaccatga tcgattaata tcgattttaa 180 tcgattttca ttaaatatga tctgaatgat cgcaaagaac ataaaagagt acaaatgtat 240 catttattta gtatacgttc attgttaaag gcccttaatg ataccttttt gaaacgggca 300 gcaacagagt tataagcctc tctgattata cagattataa tagcagagat tagctgtaat 360 gaaacatgtc gctggtcctt ttccaggctt cgctggccca ccccctttcc ctttgacgga 420 cccttgtgga tccttgaata aaagaacgaa tgccatttat attgtgtctc cctgcacaca 480 agcgtcggag taaacgcgta attcgagccg agcttgcgtg gcaagatgag tgaagcgagc 540 ggcctgctat gatctctgtc gacaaaacga gcaaaacatt aaagagcatt tcaacaaatc 600 atagctccac taatgactat caacaatcgc aacgacagtc attcagtaaa cgtatttttc 660 gatacacgaa ctcacattat taacatttgt tggccccgga gaatgttatg aaataatatc 720 gaagccaggg tagtcaatcg atgacagccg atgataatcg atgaaatcga tgaaattaag 780 gaatatcttc gtgtgactat cgattaatca tcgattacca atatcaatcg atattaatcg 840 gctgatttca tcgattaata tcgatttatc gattggcaaa ccgatgatcg attttcatcg 900 attaattacg ccggg 915 // ID DNA-3-6_NV repbase; DNA; NEM; 2966 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 01-MAY-2010 (Rel. 15.06, Last updated, Version 2) XX DE Starlet sea anemone DNA-3-6_NV non-autonomous DNA transposon - DE consensus. XX KW Academ; DNA transposon; Transposable Element; DNA-3-6_NV; REP4. XX NM DNA-3-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2966 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2966 RA Kapitonov V. and Jurka J.; RT "DNA-3-6_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 396-396 (2008). XX DR [2] (Consensus) XX CC DNA-3-6_NV elements are flanked by 3-bp targets site CC duplications. The consensus sequence contains long TIRs. Termini CC of DNA-3-6_NV differs from elements that belong to the Harbinger CC and En/Spm superfamilies, which are also flanked by 3-bp TSDs. It CC is likely that DNA-3-6_NV belongs to a novel superfamily of DNA CC transposons, which also includes DNA-3-3_NV, DNA-3-4_NV, CC DNA-3-5_NV and DNA3-7_NV. In addition to 3-bp TSDs, all these CC elements have the 5'-TAG and CTA-3' termini. XX SQ Sequence 2966 BP; 914 A; 633 C; 612 G; 804 T; 3 other; tagtctggtg gcagaagccg gaaaataggg gtttcgcaca agtcgagagc tagagaaggt 60 ttgaaagcag atttgagtag atattggtcc cctgaacaac gcctggtagt tagtggagtc 120 gaattgtggt atacgttttg aattatttac gtttttctat ttcgggtgaa aaaccacagg 180 gtacccgagt atgaatttta caaaataatt tattgagcat gcaaaacata caataaaggc 240 atggaaacat cctacaaata tactttccat atgttacaag tygctccaac taatacggcc 300 ttaaaccaca gggtgcccga gtcatatatt tgcaaagttc cagtgtgttc acgcataagc 360 ttgggaaata acccataaag ttttcattct tttgtcgttt ataactcaga agctacctaa 420 acataatact ccagtgtcaa atatrgcatc tgagctaaat cttggctcct atatgcttct 480 tttatatcaa atgagaccac agggatccca agtcaagttt tctttaaata agcaagtcaa 540 tggtaaaaca attggtgaca gctccttgtc cttaaatgac tagattgaga gaatgttcac 600 agtgaaagcc gaccgagatc tgtttggaag actttgcaaa tgcaagacaa gtcaacctag 660 cagtcccctg cgcgattgcc tacaatgatg gaagttttag gaagttcacc ataagtcaca 720 attcttgagg aaggttttga cacatgatgt tgttaatatc ttgggtggaa tggcattatt 780 cagatgcaaa tacgttttgg gagcttgcgc agaaatattt caccaccatc atgaggcaga 840 tcaccaccca aagctgctct attcttaaca tggcctttga tcagtatttg gatacaacga 900 ttcaggctgg gaagagggcc aggaaagggt ctacagatgg tcttgagata aggaacgcag 960 gccacaatac accagagtca cgacaatggt ccaagtacat atagaaccca attaagaaca 1020 agaccgtctg atgcccggga aggacctttt catatgagga ggtcttttca atggggagaa 1080 agcagccaat ggcagaaatc agcaagcttg agtccacaaa atacagggcc tggatggggt 1140 aaaccgacta gcgacaaacg gcttaaaagt aactgaatac caacaaaaca tgaaaaaaaa 1200 actagtgaat agcgacaaaa aaatatttgc tgactaccga cattttatta tttcgggtat 1260 tttaactctt tacttccatc gtcaatctac ttaaattcgg ccttttagag atctgcacta 1320 tgtatttcct gttgcatcaa cttttcagtc aattattaat ccataattaa tttattatca 1380 ataagttatt aattactaat ccattaaatc tggtacaaga gcgattacta gcttggattc 1440 acagactacc gacaaagacc gataattctt accgactacc gacaaattat ggaaattcta 1500 agtgactacc gagatgcaga cccccccccc ccatccagac tctgaaagaa cagacacgca 1560 aatgattctg catgctgcct acgatgcaag cgacttctca acagtcatca ttcaatccct 1620 agatacagat gtcctcgccc ttcgtgtcac gcacttcatt gccatcggat gtcaggggtt 1680 tggtttcgaa caagcactgc cactggcgac cgccagagac ttatcccagt ccacgcaatc 1740 catgaaaggc taggtgacag gctttgccag tcactaccag catttcatgt gttaaccggg 1800 tgcgattcca caagcagcct ctctggtaga ggaaagagga aaccatggct aacgctaaga 1860 caaagagctg cacgccaatc gacgcttagt ctgtttggtc agcatcaagc cctcgataat 1920 gagaaagcag cgaagacaga ggcttttgtt tgcrctctct atctgtatca agatcagctg 1980 acgagctgcg ccatctgatg ttctgccaac atcagacagc ctcaggcaac atatggagcg 2040 tgccagcttc caaccgttcg gttgttggcc aagtccagag gaacatggat aagaaaagca 2100 agacggaaat ctcaggcctg tctacatgac gaaagaccca gatccaccca gtcttatcga 2160 gccgacaagg tttggatgct tatgtcaacg gaagcctgtt catgtatggc tgaagaggca 2220 aagagccccc ataacatggc aagcaagtag atgagtcaga ggacgaaaac agtgatgatg 2280 agtaggatca agtcctgtta tgctagtgcc aaaccttagc aattaccttc tttttctttt 2340 acaatgcatt aaatacattc tttatatagc tgagatgtcg gatgagaaca ggccgggtac 2400 caaagcctag acggaaagag ggctgatctg tgttatgcct agcaagtaac tttgttttcc 2460 atttttaaag aagtaatatt tgggctccct gtggttttaa tgtcatgcaa ggataaacat 2520 ttggtacaaa aaacgcaatt tcaatgcagg actgcaattg ctaatattgc atcttttcat 2580 aataagttag catagcatcc tgatcaaaca ttctctgaat aatgatctat gtgagtcatt 2640 catgctattg ttagactcgg gcaccctgtg gttttaggct gtattagttg gaattacttg 2700 caacatatgg gaattatgtt tgtaggatgt ttgcatgctc atattgtatg ttttgcatgc 2760 tcaataaatt attttgtaaa attcatactc gggtaccctg tggtttttca cccgaaaaag 2820 aaaaacgtaa ataattcaaa acgtatacca caattcgact ccactaacta ccaggcgttg 2880 ttcaggagac caatatctac tcaaatctgc tttcaaacct tctctaactc tcgacttgtg 2940 cgaaaccccc tgctgctacc agacta 2966 // ID RTE-8_NV repbase; DNA; NEM; 2314 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE RTE-8_NV non-LTR retrotransposon - consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; NVREP350; KW RTE-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1665-2314 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1665-2314 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2314 RA Kapitonov V. and Jurka J.; RT "A family of RTE-8_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~97% identical to the consensus. Its 3'-terminal CC portion was reported originally as the unclassified NVREP350 CC transposable element [1,2]. XX SQ Sequence 2314 BP; 614 A; 520 C; 665 G; 515 T; 0 other; ccctgggctt cgtgtctgga gactgagaga tcccgggata aaggtcaagt tcctaaatga 60 agtaaaagct gggttagatt cagcagatgc acgtacagat ccaattgaag acacctggca 120 gtccctaaaa gggtccctaa tgggtgcaag tgaaaagatc tgtggataca caaagaaagg 180 taactggaga aaccagactt ggtggtggga tgactccgtt agctcggcca ttgatgagaa 240 aagacgtctg tggaaagttt ggaagaaggg cggcagcaag caagaatatc tgacttctaa 300 acgcactgcg aagagcatag ttcgtgccgc caagcggaaa gcagaggcca gtaaatttgc 360 aagcgtcgag aaagatgaca aggacgtttt ccgcattgcc aagcaaatga agaaggagtg 420 caaggacgtt gtgggtgagt gttgcgttaa agacgatcag gggcacatct cactcactga 480 tgatgctaag aagaatgcgt ggagagaaca ctacaaccat ctgctgaatg ttgagttttc 540 atggtcccat gaagacctac ctcctgctta cccagttgag ggacctccaa tcctggtaac 600 atctgaaatg gtggcaaggg cagtgtgcaa aatgaagcag ggcaaagcgg ccggtccctg 660 tggtgttgtg gctgagatgg ttaaggcctc tgatgaagtc agcatcccca tcctggccag 720 cctctcaaat gctatcattg ccgagaagag gattcctgta gactgggact tgagccacat 780 catcaacctc tacaaaggga aaggcgatgc gctggaaagg ggaaattaca gaggcctcaa 840 actaacggag cactgcttga aaatagttga gagagtgctg gagaaggtgg gccgaggttt 900 ggtgtccatt gatgagatgc agtttggatt cgtgcctggc aagggaacga cagacgctat 960 ttttgttgta cgacagctcc aagaaaaaca tctggctaaa ggaaagagtt tgttctttgc 1020 ctttgtagac ctagaaaagg catttgatcg cgttcctcgc gatatcttat ggtgggcaat 1080 gcgtcgcctg ggccttccgg agtggttcgt cagtacaata caagcaatgt actcccatgc 1140 ctcaagtaga gtgtgcgtca gcaattccct tagtgacagc ttcaaggtac aagttggtgt 1200 ccaccaaggc tctgtgctga gtccgttcct tttcattgta gtacttgaag ccctttctgc 1260 agacctccgt agtggttgtc cttgggagtt actctatgca gacgacctag taatctcctc 1320 agattcttta gacacactcc tggcgaagct gcgcatgtgg aaacaggggt tagagtcaaa 1380 ggggctccgt gttaacatga gcaagactaa gatcctgatg tctggccctg acttgaattc 1440 cttgagagac tctggaaagt tcccttgtgc tgtatgcagg aagggtgtgg ggagtaactc 1500 catcttctgc agtggatgtt ctctttgggt gcacaagaag tgcagcaaca tccctggtag 1560 gttaaccccc aacccattat tcagatgcag cagatgtcag ggcactgcac gcccaatcga 1620 tggcagaccc cttgctgaag tgatagtgga cgaacagcgc ctggaagttg ttgactcttt 1680 ctgctacctc ggtgacacca tctgtgctgg aggtggctgc gaggcggcca taattaccag 1740 aacaagatct gcctggggaa aattcaaaga gctccttcca gttctatcaa gcaaaagcct 1800 atcactccgc acaagaggga aggtttacag cagctgcgtc aggagtgcca tgctctatgc 1860 tggggaatgt tgggctccta agagcagtga cctagcaagg ctgcagagaa gcgaacgtgc 1920 aatgcttaga tggatgtgcg cactgaaacc cgaagatgac acaagtttga gcaccattcg 1980 ggacaggctc gggatcgaaa gcttggaact ggctctccgg aaagctcgcc tccggtggtt 2040 cgggcatgtg gagagggcac aggcaccaaa tcctgtgtcc tccatcagag acttcgagcc 2100 ggggggggcg aaggatgagg ggcagaccca gaaagacttg ggcggatgcc acgcttagcg 2160 atctaaaaac ggctggcctg aaggcaagcg tggcatccaa ccgtaaagca tggagagatg 2220 ctgtaaagaa cctgcgcgac cccgatgtga acctccatgc ggcgtcacac ctgccaatag 2280 gtggacactg acgtaaatgg atagtgagtg agtg 2314 // ID DIRS-5_NV repbase; DNA; NEM; 2720 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-5_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2720 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2720 RA Kapitonov V.V. and Jurka J.; RT "DIRS-5_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 444-444 (2007). XX DR [2] (Consensus) XX SQ Sequence 2720 BP; 779 A; 602 C; 557 G; 782 T; 0 other; attatgcaca tgtccacgaa attttacaaa attgttaaag ccgcccttat cccatctaag 60 gctcaaaggc catatcatag cagggtatat tgatgacctc tacatacagg gtcagacatt 120 agaggcatgc acacgaagtg tcattgactc tattgaaatg tttgaaagtc ttggctttgt 180 gatacaccca gaaaaatctt ctttaatacc tagtcagcag attacatttt tggggtttct 240 catagattcc atgtctacga cagtaagact cacagaggaa aagagaacca aaattaagat 300 gctcttggtt gaactcatca aaacgcggat agtaaaaatc caagccattg ctaaagctat 360 agggcacatt atttccagcc tcccaggagt aaaatatgga ggcttatatt acagaaatct 420 ggaaatggag aaggcccatg cccttaagat ctcaaaagga aattttgagt cctctatgat 480 aatttctagt cagggaatgg ctgaattaga ttggtgggtt aacaatattg acattagctt 540 caatgatatt aatcgccctc caatagacat taccatttac tcagatgcct cgcttcaagg 600 gtggggcgct gtaatggccg acaccaaaac tggcggaagg tggtccccct ctgagagtga 660 gcagcatatt aattatttgg agcttcttgc agccttcttt gctttgaaat gtttccatgc 720 ctcattggca ggcaaacata ttaagcttat gatagataat accactgcag tggcccttat 780 aaataacatg ggtacatgcc acaacaaaga atgcaatgca ctcgtagttc aaatctggga 840 attttgcatt tcacacaata tgctttggat aacagcagct catattcctg gagttgataa 900 tcatgaggca gacagagaat ccaggcattt ccattcacaa gataccgaat ggatgcttaa 960 ccgagataat ttagacatgg cattgagcaa tctaaatttc aaaccagaaa ttgacttatt 1020 tgcctctagg cttaataagc agtttgatgc ctactgttct tatcgaccag acccagaggc 1080 ctctttcata aatgccttta ccatttcatg gtctgatgag aaattctact gctttccacc 1140 tttcagttgc atctcaaagg ttttgcagaa aatcatccaa gacaaagcga tgggagtgat 1200 ggttgttccg ttctggccaa gccagacttg gtacccaatc ctgatgtctc tgcttgctcg 1260 tcctccagtg aagctgccgc cattcaaagg tctgctgacc ctgccagcct tcccggaaac 1320 ggttcaccca ctgcacaaga aactgaccct tcttatctgt ctattgtccg gcaacaactg 1380 actggactag gatttacaga gcgatctgtg aagattatta cttcagcttg gagggaaggg 1440 actacatcac aatatcagac tcatttaaaa aagtggctcc agttctgcaa agagagaaaa 1500 tgtgacgtaa tctcgcccaa attgtcattt gcccttgatt ttctctccat gctacatgaa 1560 caagggttgt cgtatagctc tgtcaataca gcccgaagca tgttgtcctc cattctgcag 1620 cttgatgcat catcatcggt gccatttgga cagttaccta tcgttaagac atttatgaag 1680 ggcatctttg aacttaagcc tgccctccca cgctacgtat ctacttggga cttgagtgtt 1740 gtcctagact ggtttcgcaa gggcgaaatt gttacatccc ttactttgaa ggaattgacc 1800 ttgaagctta catttttgct aattttgttg agtggacaga gatgccagac gatctcgttg 1860 ttttctctgg aaaatatgaa actgtctgac tctagctgta ccttcacagt aaccgagaag 1920 attaaacaaa ctcggacagg gcaccacatt gctcctattg tttttctggc atacccagaa 1980 gatgagaaac tatgcataat gaagtactta aaggaatacc tcctacgaac tgaaaaccta 2040 cgtaataatt gcaagcaact acttttatgt catgcaaagc ctcatggccc tgcaagtacg 2100 gataccatat cgaggtggtg caaagcagtg ctcgcttcag caggtgttga tgtttctcag 2160 ttcaaagctc atagcaccag agccgcatcc acatcgttct tggcaaacag agaggttaac 2220 atccaagata tcatgaagtc ggcaggctgg tctagcgata agacatttca gcgtttttat 2280 cacaagccta cagagcgcac cttcaacttt ggtagcgcta tactttccct aggaggtcaa 2340 cataagtaaa taatgtgaaa catgctacca catttttatt gtttatggat ctacagccta 2400 gatgttgtat aatgtacatc ccgcttgttg ttataaccac tgttttattg aagtgaattt 2460 tgcacagact ggttgtgtta ttaatgtccg gtactgttgc atcatgggta acatctgttc 2520 ccgcatctta tttttcaacg atgcctcaat aactgctctg aaatctcgta ccagtccctc 2580 acgacctagg ctgatgacga aatagaattg gaaattaaac gagacttacc tggaagtcga 2640 agtttgattg tgattctatg agtcatcagc cgggagtgta gggagtggta cgcccaccct 2700 tgttatgccc caccctctgg 2720 // ID DNA-7-16_NV repbase; DNA; NEM; 318 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-7-16_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW NVREP316; DNA-7-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-318 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-318 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-318 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-16_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies of this transposon are 84-95% identical to the consensus. CC Originally, it was reported as the NVREP316 unclassified DNA CC transposon [1,2]. XX SQ Sequence 318 BP; 96 A; 61 C; 68 G; 93 T; 0 other; cacaggcgga ccaggattag aatcagtccc tcgtgatcct tcgggaaaat aaaatataat 60 ttgaagttgt gtcttgactg tttcctcaat aaagctagtt acattactat attagcctcg 120 tgtgttgttc ttaaggggaa ttgtggcgca gaaaggggtt tagtccctcg agagaaaatt 180 ccccttaaga acaacacacg aggctaatat agtaatgtaa ctagctttat tgaggaaaca 240 gtcaagacac aacttcaaat tatattttat tttcccgaag gatcacgagg gactgattct 300 aatcctggtc cgcctgtg 318 // ID BEL-8-LTR_NV repbase; DNA; NEM; 373 BP. XX AC . XX DT 11-MAR-2011 (Rel. 16.03, Created) DT 11-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE LTR of the BEL-8_NV autonomous LTR Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-8_NV; KW BEL-8-I_NV; BEL-8-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-373 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-373 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-373 RA Kapitonov V. and Jurka J.; RT "A family of BEL-8_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (11-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 373 BP; 135 A; 71 C; 61 G; 106 T; 0 other; tgtttcggca taaatctatt acataagtga caagtgacag tttcgttaat atcgatttca 60 accacgtgat tataatccat tgtaaatcag tcagatcaac agtaaccgag atcggaactc 120 tgaaatacag ctaaccagta caattacaaa acctacagct aaccaggact ttgagaatca 180 gaaaacacga tcggatacgc cacagaagta agttaatttg tgagtttgaa taactgtaaa 240 taagctttga ttccatgcaa tcaatgtaaa tcaaataact ttcattcatt ctagatcgaa 300 taaatatatc tttacacatc gttggattgt tatacggttt gtggcgaaat cctcacggga 360 acctaacgca aca 373 // ID DNA-9-34_NV repbase; DNA; NEM; 1029 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-34_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP324; DNA-9-34_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 202-1029 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 202-1029 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1029 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-34_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 89-95% identical to the consensus. It was reported CC originally as the unclassified NVREP324 transposable element CC [1,2]. XX SQ Sequence 1029 BP; 278 A; 222 C; 219 G; 310 T; 0 other; caatctcgtt cccagagccc acgtaccttt gtgccagcgg caaggtacaa ggctctggga 60 taatcaattt tttcaccaac agaatctgtt ggttccggtt ttactgcgca tgtccaaaca 120 aaatagcgac cggaaagaac aagagttgat ctctttcact gatcgatcta attcgcgctt 180 gacaaattag gaaaagtcga agattttacg ctgaaagaaa ttcaatccca gattttgaag 240 tcagtcatcg tttatagaaa ggatggtttt ggtgtatatg ttgccaaccg gtagtggtaa 300 agcattccta attcacgaag tgcttggatt cgcccacgat ttgtttgtgt ctcaaggaga 360 gcgcaaatcc agctcaatta ttttactgat ttcgcccttg aatgcctcaa tggaggacaa 420 gattgaaaag cttcgctcac gcattatttc tgtgcccagg catgtgagga ttccatcgct 480 tcacgatgta aatattacat ttgcccgcct cgaagtagtc gttaacggac ggggattttg 540 attatattgc cttcgcgttg tctcttgtcg aagagccgac acataccgca gaactctttc 600 aaagagttat tccgccgaga acatgaccgg catatatatt acgacttcgc acgcttctac 660 atttcccgtt atttcccata ggctttccac aaggcctccc tctatgttgt aagacccaaa 720 aagctacaat tgattattgt aaggtactaa aagtttgtag cagcaataat aaaatttggt 780 tttaaatgta tacgctggtt tgtgggagtt ttctctgcaa ttttattttc aaaacagatc 840 tactagtaat gacagaatgt gtgacaggcg tcgtgaagct tttccattgt tctattcact 900 tccgttttat ttgcgcatgc tcactgaagc aagctcgaga gccaataaga atcgccctag 960 gaattgatta tcccagagcc ttgtaccttg ccgctggcat aaaggtagtg ggctctggga 1020 acgagattg 1029 // ID Harbinger-N8_NV repbase; DNA; NEM; 423 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP71; Harbinger-N8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-423 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 167-167 (2007). XX DR [1] (Consensus) XX CC Harbinger-N8_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N8_NV CC transposon is characterized by 26-bp TIRs and TWA target site CC duplications. XX SQ Sequence 423 BP; 108 A; 107 C; 99 G; 109 T; 0 other; ggggtcgtcc acactaacac ggattcaaaa gtatccggat tcgtttcgcc gaaaacgcat 60 cacttgattc gcgtccacac tatcgttttc gcatcgtgtt cgcctggatc cagccgtcca 120 cactaacacg gattcaaacg tttgaaaacg ctgaaaggta cagggtgacg tcatttttat 180 gatatgcgca tgctcaaagc agcgcgcgcc tgcgatatga cgccatcgtt ttcattttga 240 tacggattcg accgtccaca ctacggacca aagtatacgg attcattttg attcactttc 300 gacagcgttt tcaaaagtat ccggattcgc tggatccagc gcgcgtgtta gtgtggacgg 360 aaggcctaaa cgtatcaaaa agtatacgga ttcaaacgaa tccgtgttag tgtggacggc 420 ccc 423 // ID Kolobok-N9_NV repbase; DNA; NEM; 2074 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N10_NV; Kolobok-N9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2074 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 344-344 (2007). XX DR [1] (Consensus) XX CC Kolobok-N9_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N9_NV transposon CC is characterized by 15-bp TIRs (2 mismatches) and TTAA target CC site duplications. Kolobok-N9_NV elements are ~6% divergent from CC their consensus sequence. XX SQ Sequence 2074 BP; 613 A; 343 C; 399 G; 718 T; 1 other; agagaccatg acacgaaaaa tacataagct tttataacaa aatatagcta tcgatgtttg 60 gttttaaaaa tgcctttgcg cttattgatt acaggaattt ttgtaatcgt gttttgaaaa 120 tgtcttgtct tggcgacttt tttttgattg gctgacgtca agagttgtac acacttgatg 180 gggttccagt cgaacttcgc ttgccattgt agatttgtaa agatgaggac gagcatatct 240 cttgtatttt ttctatttcc tcgcttttca agacttggta aagaaagatg attacaatgt 300 tcaaacaatg gatccaagaa taactttttc ctatcactaa gataggggtt taatcgaaac 360 ctgaagtgaa tggaatgaaa agacatctct ggagtgttta ccagttcgag tcgatcggtt 420 cattcaagca aatgaatttc aaccggatta ttttggcttg ttttgagcac tacgcttcat 480 ttttaccggt aaggatgaat ggtttgatta ttagaatatg ttctattgga ttggacttca 540 tttcaatgca tttttattcg caaactgagt tgtagatata attacgattt cttccacgtg 600 cgaatgcgaa cggccataaa accaagacgg ggcgaacaac ttcactaaag ttagtaaact 660 cgcaaaaata ccagttcacc ttcaaacagc accccggggt ggaaaatgtt gaaagaacca 720 catgcaattg taataatctg attcactgtt gagcctcaaa gtacaacaaa ttgccaaact 780 gggaaaagcg aaatagtttg ttttaccgcg ccgattgaca acaggatttg attcagtcat 840 tcaaggaatg atatttctct acaaaacgaa cagtcgaatt atcgacaata atcagtcctt 900 acaatcggga gggaggaagg gtaaacataa aattcgaatt tgttctagag ccaagaaaag 960 cacggtgaag ggtgcaagtt ttcttgtgag tgttttctta tcgcaccgta cgctttgttt 1020 tgctagtaaa tgtacatttg tgcggttgtt gtgcattccc tttcacatat accaagtctt 1080 gatggcagtt tttctttaaa aaaacattag aactattcag ggattataat gctagtacca 1140 tctactgcat ttgtttgttt gtttattaaa agagaattaa atacaatcga gttttttttg 1200 ccgttcactc attgatgagt tttagtcctc gcatctcaac ctacttttta gattctagat 1260 ttccagtcgt ttctctttga gtttgatatc ttgacgtttt ttttatctct ttgtgtagat 1320 gatttatagc ttgcttccct tgtaatctat aggtttcatt atttagtgca ttgtttagtg 1380 cgtaaaaaat gttcttctaa gagcgtgttt tgttcttgtg acaattcgca ataaattgga 1440 caaaaaaaat tataaacatt tttttwctct gtattatttg aaagcataga cgctttcaaa 1500 atatgcattc tgctttgcag aaatatagat gcgttacttt ttgccttgta atatcgtttc 1560 gcaattattt acagcgtata tcttattgct ttgatcacaa ttgtgatcga aaaaggagtg 1620 agtttgccga aaagttgggt gattcgcgcg caaatggtgt tcaaaagctt ataaaaaata 1680 ttaataaaaa tcaccgctcc aattgctgca ggattcctta tggatacttt gctcaggtta 1740 cactcagcta ttttctgggg aagattcggg ctccacgatc aattatatgt gtattttggg 1800 tgggaggcgt cctattttgt atgggaatgt ctaatgttta tcacccactt gtacaactct 1860 tgacgtcaca agtgatatgc aaattagata ttcggatgtc gccggtttca tgcgaaaatt 1920 tgccaaaatt gctcatttta aaaggatcaa aaatcaggtt tccgtttaaa tcaagtatcg 1980 aaaattggag gaattattgt tgggatatta cgctactata ctaactagtc aatttgtcaa 2040 aataagcaaa agagaatttc gtgtcacgtt ctct 2074 // ID Kolobok-N11_NV repbase; DNA; NEM; 828 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former piggyBac-N1_NV; Kolobok-N11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-828 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 358-358 (2007). XX DR [1] (Consensus) XX CC Kolobok-N11_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N11_NV CC transposon is characterized by 18-bp TIRs (3 mismatches) and TTAA CC target site CC duplications. CC This family is composed of several hundred elements: while the CC youngest elements are CC less than 5% divergent from the consensus sequence, the oldest CC elements are ~20% divergent CC from the consensus. XX SQ Sequence 828 BP; 237 A; 158 C; 149 G; 284 T; 0 other; agtccatata acctttcaga gttgatagac tttgtcaatt ctttatattt tcatcttcca 60 aatggtatgt ggttcgtatg gaccctataa aacacgcgtt cgcgcgaata actcaaatct 120 gtaatattga ggtattttgg tcaaccttcg gaaaaaaggc cgtgaactga aaggcccggg 180 tccagtcatt tgtgacgtag atcgagatgt caaccaaatt acatgagaaa acatatgcgc 240 gcgctaaacc ggttcccgtc ttcatgtctt cttagttatt gctgaagaac gttgtgtggt 300 tacaactttt accgtcatct ttatatctca acctggtagt caaatgatta tttaacttca 360 ggaaacaaat ctgcaaaatt tagcagatat tttttagtct ttgaattgtt tttgcattgt 420 gcgcgcgcgc tgcattcgca atcaagaatg gcgacattct cacgagcgcg cgctgttttt 480 gaaacctaca acaaaacgat attttctttt ttcgcataca attctcgact ttaaattatt 540 cttcgcttca ttgtgggtag cattgcaata gaaaacaatt cgccaatatt ttgtggtatt 600 gccgtctctg aattttaacg gatttaagga aaatacgttg tttcagattt tcccgccaaa 660 acttggaatt attcactcga ttcaatctcc tttcgcgcgg ccaggaaaat tttcaaagat 720 ctgtagaaaa ttcaaatttc aatcaaattc aattcccttt tcagaatttg aaagtttatc 780 tatgctttgt tttggctaga ttgatataag tgaaaggttt taagaact 828 // ID LTR-4_NV repbase; DNA; NEM; 734 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-734 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-734 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-734 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Copies are flanked by 4-bp TSDs. XX SQ Sequence 734 BP; 205 A; 169 C; 117 G; 243 T; 0 other; tgttatgaag gaattgttaa tctatgcaaa agtcgtttcc gacacgtcag tcagatattt 60 actttcactt tccattcgac atttcactta tttgctttac gtggatctct tcattgtttg 120 actaagcatg cgtagttact gtttagcaaa acaggtttta tatttgccag gctaaaataa 180 cagtttaacg attaccttta tccttaatct taccgctgtt acattactta attttgcata 240 ttactatagt caaactcttc cttttatact gctcttgcta tttctatcga aggaatttat 300 tctaagtcat ttattatttc atcgttgatt ttcttcccaa agtcaacacc cgatcttcta 360 ttcttacatc atccttaaaa ccagtttgac cagtttatta atgagattag tataaattga 420 gcagcatagt aactagctct aggattgtac tgtaactgtt gcgaggacac tacacggcag 480 tgctctaggt tggtttagtc aggactctct aaagttggct tcgtcaactt tccgggaaag 540 agatgttcct tcactacctt ccgaaagtac ttgccttcgt acagccaacc tcccgctagc 600 cagtggtagc tctaccattt gtaaacactc aagcggtgca ataaagaaca aagaagacgg 660 tcaacccttg ctcagcgtgt acgatccccg gctaccccca ataccataaa agaaccaccc 720 aaaacctcgt aaca 734 // ID DNA-5-12_NV repbase; DNA; NEM; 162 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-12_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-162 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-162 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-162 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-12_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 162 BP; 41 A; 31 C; 47 G; 43 T; 0 other; cagggctttc attaactttc agagtaggcg gtggagattg ataagtaggg ggtggaagtt 60 attttatctt tttagttcaa gacttttaaa aaaaaagtag ccggcgctcg gtggaaaata 120 gctggcgctt ccgccggccg ccggggccta atgaaacccc tg 162 // ID Rex1-21_NV repbase; DNA; NEM; 827 BP. XX AC . XX DT 30-MAR-2009 (Rel. 14.03, Created) DT 30-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone CR1-20_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; Rex1; KW NVREP688; Rex1-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-827 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-827 RA Kapitonov V.V. and Jurka J.; RT "CR1 non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 720-720 (2009). XX DR [2] (Consensus) XX CC S = 95%. This family belongs to the Rex1 group.The 5' terminal CC portion of this retroelement is not known. XX FH Key Location/Qualifiers FT CDS 2..706 FT /product="Rex1-21_NV_1p" FT /note="incomplete reverse transcriptase." FT /translation="ANWPCRVKYVDNTTIFEIIPRCSPSYLQFIVDELSEF FT ASSRGMRLNPKKCRELTINFLQFKPTELAPLFLNGSQVKQSVDYKMLGVHI FT SSDLSWNIHVENIIKKANKRLYALRLLRKAGVDSNDLIKIYTSLIRSVLEY FT AAPAWASLPIYLQDALEGIQKRALRCIYAEYDLLFQILLCRAGIATLDERR FT KLLCQTFISKATSSEPLKSVIPSRSAVSHCYTLRSGSVWAIQPVR" XX SQ Sequence 827 BP; 217 A; 188 C; 172 G; 249 T; 1 other; tgcaaattgg ccctgccggg ttaagtacgt ggataatacc accatttttg aaattattcc 60 taggtgtagc cctagttatt tacagtttat tgtcgatgag ctgagtgaat ttgcttcttc 120 tagggggatg cgcctcaacc ccaaaaagtg tcgcgagtta actattaact tccttcaatt 180 caaaccaaca gagcttgccc ctctgtttct gaatggttct caagttaaac agtccgtgga 240 ttataaaatg ctaggcgttc atattagtag cgatttgtca tggaatatcc atgttgaaaa 300 catcataaaa aaggcgaata aacgcctgta cgcgcttagg ctactgagga aagctggggt 360 cgactcaaat gacctcatta agatttatac ttcgctnata agatcggtcc tagaatatgc 420 ggcccctgct tgggcgtctc ttcccatcta tctgcaggac gcgctagagg gcatacaaaa 480 aagagctttg agatgtatct atgccgaata cgatcttctc tttcagattc tgctgtgccg 540 cgctggaatt gccacgctag atgagcgccg taagcttctc tgccagactt ttatatctaa 600 agctacatcc tcggaacccc tcaaatcggt tattccatcc cgttccgcgg taagccattg 660 ctataccctc cgctcgggaa gtgtgtgggc aatacagccg gtccggtaga actgatcgct 720 tcaataactt tattactaac cgctttgtca attaatgttt tgtaatggcc ttccacataa 780 ttcagttgta ttattactgc aagtggtcga ataaactatt attatta 827 // ID DIRS-29_NV repbase; DNA; NEM; 2198 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-29_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-29_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2198 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2198 RA Kapitonov V.V. and Jurka J.; RT "DIRS-29_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 424-424 (2007). XX DR [2] (Consensus) XX SQ Sequence 2198 BP; 589 A; 557 C; 493 G; 559 T; 0 other; gagaggaaat tgacaaaggc aactatgtga ttacaacaac aaaacctaca gtagtgagtg 60 cattaggagc tattcctaag cctgactccg ccgagattcg cctgatacat gactgctcga 120 ggctgcacgg tctggcagta aacgattata tagaaattga caagttcagg tctcagtctc 180 tcgacgacgc gataattttt tgacacctaa cgcctacatg gctaaagtgg atagcaagca 240 tgcttatcgg tccataccta ttcaccctga caaccaccgc gcgactgggt gtaaatggaa 300 attctccagg gataccgatt atacatattt tttacgacac acgtctgcct tctggagcaa 360 aaagttcgcc cagcatattt aatcgcataa cacaatctat ccgccgcatg atgcaccgcc 420 ggggattccg agacatagtg gtatacttag acgactttct cgtagccaga gacacgtttg 480 aacaatgcaa cttagcttac gaaacactga catcgctgtt gtcggatctc gggtttactc 540 taagcgcacg taagctagtt ccacctacac aacgtttaac ctttcttggc atccaattag 600 acacggtcga atgctctatg gcactacctc aggaaaagct gcgcaaactt aataatctgg 660 taattgaatt ccagaagaag cgcaaagcga acaaaaaaca actgcaacgt ttaacaggca 720 aattgaattg ggcctgtcgt gttgtatttg gtggtcgcac ctttttacgc cgcattattg 780 acacaatgaa tgacctgggc ccaacgggta aatattggct cgattatgag ttccgccgcg 840 atcttaattg gtgggttgaa ttcttaaagg tcttcaatgg caaacggctg ttcctaggag 900 cagtccccac ggtagatgtg cacacggatg cgtgccctct ggcggcgggg ggtattttcg 960 aggggattgg tactatcaca gtttcccctt agacagcccg gaatgggata cactgcatat 1020 caatcacaag gaaacgttag cgataacttt agcgggcaaa cgttgggcac acgcatagtc 1080 aaaccaacgg gtcataattc atactgacaa tcaagcagct tgcgcgataa ttaacaaagg 1140 atcgacagct aacagagcta taatgcagga attgcgcgag gtgttctggt tatcagcgat 1200 gtataacttt catttaacag cggtttacat cgaagggggg tgtaacgcgg tggcagacgc 1260 ggttagtagg ctacacacac cttcgcatct cctctacttc tattccacgc tttgcgcgct 1320 ttttccgaac ggagatgtgg ataatgtacc acccctagcg cacatgtctc cttatagcct 1380 gcatctcgtc tcttccaggt ttacgttagc gggagattgc cgctgagctt gagcgcgacg 1440 tgattaattt ccgccaacac acatttgcgg aatcgaccaa ggctacgtat aaaacacaca 1500 gagcgacgtt tttgcgattt tgctccttca tgggctttag ccccgtaccc ctacaacaac 1560 ggcacttgct cctgtatgca gcttttcttg cgagatcgct taaaccgaca tcgatccgta 1620 gttacctaaa tattattggc attctccaca aagaattcgg attacctaat ccgctgctga 1680 ataattggtc gctgcaagct ttattgacag gcattaagcg cgcgaagggg tctcccccga 1740 atcagaaaca acctattact actgcccttt tacatcgcat attcgcaact ctaaaccata 1800 ggtcgagcct agacgcttct ttctgggcga tatgtctagt agccttttac ggcatgtttc 1860 gcaagtccca cttgttgcca acatctgcca cgcgcttcga cgcggacaaa cagctcacga 1920 aagctgacat caccatccaa ccatggggcg ccctggtaac cattcactgg agtaaaacta 1980 ttcagttccg cgaaagggtt gtggaaattc cactcccacg tatcccgggt agcgagatat 2040 gcccaacgtc agccatcgaa catgctgtcc actttaatag ttctagtggt gcgcgtagcc 2100 aggcattcga ttggatggag gatcgcgcgc cgcgcatatt tacatataaa aagttcgtca 2160 ctaaacttcg ccaccaccta gcattatgca atgtcacg 2198 // ID Mariner-4N1_NV repbase; DNA; NEM; 1175 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-4N1_NV non-autonomous DNA transposon DE - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Tc1 group; TA TSDs; non-autonomous; Mariner-4_NV; KW Mariner-4N1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1175 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1175 RA Kapitonov V.V. and Jurka J.; RT "Mariner-4N1_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 612-612 (2007). XX DR [2] (Consensus) XX CC This is family of non-autonomous Mariner/Tc1 DNA transposons CC derived from the autonomous Mariner-4_NV. XX SQ Sequence 1175 BP; 311 A; 279 C; 229 G; 356 T; 0 other; cagtcgaacc tctattaagc ggccctctat tgagcggtca ccctctattc aacggtcatt 60 taccaaagtc ccgaattttc ccccttatgt ttactgtaaa tttgacctct attgagcggt 120 cacctctatt aagcggacgc ggtcaccaaa ggagggtccc aattggttga tttcattgtt 180 tttcacctct attaaacggt catcatcaat atttgtcagc atgacaacag atagtgcacg 240 tcatatttcg tcatattttt aactgtctaa tctaattact atggctaatc gtcttgtgag 300 acttgtgtgg tcttgtgcgg atcagtcgca tcaaattcct cgattaccaa tttccgcttt 360 agccagctag aagaaaaact gtcaccttca aatatgtatt cacaaggaat ctcgagtcca 420 tagccaccac ctctgttcac ccacttccct ttgactacga ctttctcaca gttcgtaggt 480 ctcttgagat atttggtaac ccacgttgac atcagtttgg gaatatgcct gataacttcg 540 taatcgtcaa ctagagtatt cgggtgaccg tctccatcca tcaccgtttt gtcggctttt 600 tctcttacga ttgcaacagc attcggatcc tttatgttag ttggttcccg cataagtttg 660 taaacatctt ctagtgctgg ttcccactca gtcatgtact catggtatcc ccgaatgaat 720 gcaactgggt cagatttgtg agtttttggg tacggcaacg cactgcgagt ttttgattcg 780 acttccaaaa tcgcgcaaac gcttaatgac ggatatcgac ggaaacgacg cgtgtaacat 840 caccttaacg cactcattta ctttacataa cgccagcgaa agtagctcat gcccatagaa 900 ttgggcaaag ccacaagagc cgtataggca aaaacaaact gactaggcgg tttcaaacat 960 ttctggatca aattggaatg caccaggccc cgtcttaggg ctaacatgat tgttactgtt 1020 gtttattata ataaaaagtt cttacgtata attacagccc gatttacgct aatttagggg 1080 cgaaaatagc gaaacctcta ttaagcggtc aacctctatt aagcggtcac taagctaagt 1140 cccgagggtg accgcttaat agaggttcga ctgta 1175 // ID BEL-12-I_NV repbase; DNA; NEM; 5542 BP. XX AC . XX DT 22-MAR-2011 (Rel. 16.03, Created) DT 22-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Internal portion of the BEL-12_NV autonomous LTR Retrotransposon DE - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; NVREP266; KW BEL-12_NV; BEL-12-LTR_NV; BEL-12-I_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 4-401 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 4-401 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5542 RA Kapitonov V. and Jurka J.; RT "A family of BEL-12_NV LTR retrotransposons from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (22-MAR-2011). XX DR [3] (Consensus) XX CC The polyprotein-coding ORF is corrupted by two frameshifts. XX SQ Sequence 5542 BP; 1711 A; 1072 C; 1499 G; 1260 T; 0 other; tcattcgacg gcagagtaaa tgaacactga ggattattat cttggaaaca tgagtgaaaa 60 cgaagctagt agtgaagtcg aacgaataga aagcaagaaa aggtccctag gaggctacct 120 agggcgcgtg agtattcaca tgaaagagct caaaacttgt cttgatgatc cctctagagc 180 caatgaaata cagacagcct tgaatgaatt acagtcggct ttgaataact atgaggactg 240 ctatcagtcg tacattttgg aagaattggc aaccgatgaa ttcaacagag tgaaagagaa 300 atttgaagaa actcgtaatg agtgtgaaac tactaccaaa ttggcaaatg aacgtttgaa 360 gaaaggaaag tcaaactcaa ctaagtcaag gctgtctagt aggtctagga aattaagaga 420 gaaaatagaa atgaaaaagc ttcttttgca acaagaagaa gagatagctc agcatcgaat 480 ggatctggaa cgtaagaaaa tagaattgga atatgaacag aaagcgagag catgtaagct 540 caagttccag gttcaaatcg cagaaaagga agctgagtta ttagaagaga gagggagtga 600 gtctgatagt tgtgtgtcag aagagtataa aggggatgta ggggtcatgc cacccatgtc 660 tcaagaggaa aagctaatga aatggaccga gcaatgtgac cccattcctg ataatcctag 720 accagacaca cctaagctaa tggagggccc ttcccatcct aaagacccca ttcctgagag 780 aaaaccccag attaatgacc aagaagcccc ccctagtagt tataggaaaa ccccgtttgg 840 ttttcttccc gtgaacagta ctgatatcat gttaaagctg accatgctcc aagccatgca 900 acctgttaag ttctctggga atccaagtga ctttcctaat tttaggaaga gattgagaga 960 taatttagaa gatgaaattt taagtgattc acaaaaggtt gaattcctac cgaagttcct 1020 ctcgggggag gcttttgaag ttgtggaaag ggtttccggt tgcagctatt cagtgatagt 1080 tgatattttg gaagaccgat atgggcagcc agcgaccgtc gctgcttctt gtattgacaa 1140 tttgaccaga ggcccaagat tgaacaatca tgattataag ggactgaggg attttgcaga 1200 gcaacttgaa tcagcctcaa agaaacttgt tggggaatat gctattgaag ccagtaccat 1260 ctcaaacatg aaacagatag ttagaaggct tccccagtat ttagtaaata aatggggtga 1320 tgtatcctac aagataagag aaaagggggg tatccctaag atttcagatt tggcagatta 1380 tgtgaagagg caagcagcca taaagaatga cccaggtttt gttaacctaa gcatgagtga 1440 gaacaagggt ggtggtgata aaagacccga gcagggtggg aaaggcaaga actaccagaa 1500 acagacttct gtctttaaaa cagacatgga aggctcaccc cctgaaacta ctatgggtaa 1560 acaagcccca attaagacct gtccttgctg tcaaggagaa cataggcttt cagactgtgc 1620 aaatttcaag ggaagggact tacccggccg ttggcgactg gtaaaggaga agagattgtg 1680 tcatatatgc cttaggccag gacatatgag ggacagatgc catacaacca ctttttgtaa 1740 ctgcaaaagt gagcgaaaac accacacctt gttacataac ccccctagag ctaaagatga 1800 ccctcccaaa gaacttaact cgagcgcagg ggaggggacg accgagggac cccctagaag 1860 agaccatgct cagggcaccc ggggtgggga gccacacagg caaaccgagc aatacgcaac 1920 attttctgaa agagccacaa aaacggtgtt actacatgtt gtaccagtta aattgattgc 1980 cccaaatggg aactctctga caacgtatgg gctactggat aatggctcaa gaggaactat 2040 gataagctcg gaggtttcag cgaaactcga acttaaaggt catactgagg aaatatccat 2100 caccaccatg atgggaagta gtaaggaaca gatagaggtt gtggagtttg aactgcaaca 2160 cgcaagtggt gaaggggata gaattcccgt aactgagggt ttggtaacga agaaattcaa 2220 tgtcaacgaa aagtgtcttc ctaaagatat tgacagagag gcacacccgc atctgaggga 2280 tattgagatt ccctcggtag acatgcctaa ggtttcggtt ctgataggaa aggatcgttg 2340 gctatgcgca tgaggtgttt gaagtgcgta gaccagcgac gaaagccagt gatttgaagg 2400 ctttgagagg tcctcttgga tgggtaatta caggaaccct tcaaggggag acctcatgca 2460 aggaagtaaa cctgaacttt gctgattata agaaagaact tcagcatcag attgagcggt 2520 tctgggattt ggagagtttc ggtacaaaga gtgttgggac ggacaaggga tccccaagtt 2580 ttatatcgca ccatctgtcc agggaagaca ggaaggctat cgataagttg gagaagacca 2640 ttactaagcg tgatggtcac tatgaaacag gcctcctgtg gcgggatgat gatgtgaccc 2700 tacctaataa ccggaatgaa gccgataaaa gactgaatag tctgaagcgt aagttttcac 2760 gagagcctgg attggaggag aagtatcgag cagccatgga gaagtatatc actaaagggc 2820 atgcacgcaa actcagccca gaagaagcac aagagactgg accgagaact tggtacttac 2880 ctcattttgc agtgacgaat atcaacaaac ctggtaagct gaggataatt tttgatgctg 2940 catcagagta ccaaggtact tcgttgaata agaacttgtt acatggacct gattgtacaa 3000 acagcctgac tggggtgctc ctacggttca gggaggacaa tgttgcattg gtagctgata 3060 tagaagggat gttccttcag gtcggagtta gagaagaaga ccaagattct ctgcgatttc 3120 tttggtggga caaaagctct gatgaccctc cagaagaata tgccatgaac gtgcatgtct 3180 ttggggcaac cgactcgcct tgtgcagcca actggacact caagaaaact acaactgaca 3240 atgctggtga ctttggagat accaccatcg aaactgtcct gcataatttt tatgtggatg 3300 atgtactaaa aagcgtagac acgagtgcga gtgcagtcac gcttgcgaac gagttaaccg 3360 aactttgtgg tagaggaggg ttcaacctca caaagtttat gagtaacagt agggaggtcc 3420 ttgctgaagt gcctatcgag aagagggcag caccaacgct tgatttagat cttgatgaac 3480 tcccagtcga gcgggcactt ggagttagat ggaacgtgga gacagacacc ttcgggttca 3540 aggtgagcaa cactgagaag gctgatacta tgagaggagt actatcgaca atcagctctg 3600 tctttgaccc tttgaacttt gctgcaccag tgataatgcg tggcaagcag atcatgcaag 3660 ccctatggag gcggaaggca ccatgggacg agccgctcag tggagacatt ctgcgtcagt 3720 ggcagacatg gaaaagggaa cttgtacggc ttgaagattt gtccgggatg agcgatggct 3780 taatggtccg agtttcttga gagagtcaga agatcaatgg ccagataata aatttgatgc 3840 cctgtctgaa gaaagtctgg agataaagaa agaagtgttc ttcactgacc tggagccagg 3900 agatggcctg gaaaagcttc taaccgacac ttctgattgg atgaagacca ttcgaaaggt 3960 tgcgtgggta atgaagtttg tggagtggtt gaagacaaga aagcatgcaa agcctactga 4020 aaagacacct ggagagtcag agaacaagct aagtccagac gacatagaac gcgccaagcg 4080 acgaatagct gtactagtac agcgggaaag tttccctgaa gaagtgaagg ctctgaaggc 4140 aggaaaggag gtgaatgttg ctagtgctat cttgaagctt aagccggtca tgaaaggcga 4200 tgaagttatg agagttggag gaaggatctc gatggcaccg atgagtgatg atgccaagaa 4260 tcccatgata ttgccgaaac agagtcatat cactactatc ttgatccgcc acctacacga 4320 aagcaacggt cattgtggcg tggaacaagt actatccctg ctgagagagc agttttggat 4380 tgtgaaagcg agagtggcca tcaaggctgt tcttggaaga tgcattcatt gtcgcaagca 4440 aagaagaact actttgaagc aagagatggg agatctacct agaattcgga tgatccctta 4500 cgagccaccc tttacgtata caggtattga ctattttgga ccgctatatg ttaagcgggg 4560 aagaggaaga gtgactgaga agcgctgggg agctatcttt gtttgcatga actcccgagc 4620 agttcatctc gagttagcta agtcgctaga gacggatgat ttcatactcg ctctgatgag 4680 gttcctgaat cgcaggggcc atgttgtgga actgtggtcg gataacgggt ccaattttgt 4740 gggagctgat cgggagatac gtgaacatct ggaaggaatg gatcatgaca agatcggacg 4800 tgagtgttct gcgaaaggat gcaagtggat ctttaatcca cctggagcca cccacatgtc 4860 aggcgtgtgg gagaggatgg tgagagtcgt caagcgaagt ctgaaggcga tcctggggaa 4920 gaaccccctc aacgatgaag tgctgaccac cgtgtttact gaggcagaac gtatcgcgaa 4980 ttcaagaccg ctaacccgga atccagagaa tcctgatgat gaggatcctc ttacgcccaa 5040 tcactttctg aacgtgcgac ctacgatgaa tcttcctacg gatacggatg aacgggcaga 5100 taagtacagt cggaagcggt gaagacaagc gcaattactt gctaaccact actggcgtcg 5160 ctggttgaaa gagtacattc cttccttgca agttcgaagc aagtggaaca ggaaacagcg 5220 aaacctacac gtcggagata tagtgctcgt tgcggacgac aacgttggac gaaacaactg 5280 gcctcttgcg cgcgtgatta atgtgtttcc tggcgtggat ggattggtaa ggagtgcaga 5340 ggtgcgcggt aaagggacga cctacaagcg cccggtaacc aagttgtgtc tgctggaagc 5400 cgaggatgag gatgtctaga tacggatcgg attggagact caagggacag acgtagatag 5460 tgtaatatag aacggacatt agcgttatga caatacgttt atagttatga acctcctccg 5520 caggagttca tggggggcgg ga 5542 // ID DNA-TA-23_NV repbase; DNA; NEM; 229 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE NVREP240 non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW NVREP240; DNA-TA-23_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-229 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-229 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-229 RA Kapitonov V. and Jurka J.; RT "A family of NVREP240 non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC It is repaltively old family: copies are 78-93% identical to the CC consensus. Originally, it was reported as the NVREP240 CC unclassified DNA transposon [1,2]. XX SQ Sequence 229 BP; 66 A; 43 C; 54 G; 62 T; 4 other; dnatanvggg aacttaagca aacacgtttc tggacgacgg acggcaaccg gaagtagata 60 atttttgtgt ttaacgctat cgcaacgcta gcaggtttca tatgtaagac tgcgtggtag 120 aacagaaacg tcttctttca ttgggttgga gcaaaaactt tacaaagaag gaaaacgtta 180 aacttccggt tgccgtctgt cgttcagaaa cgtgtttgct taagttccc 229 // ID SINE2-5_NV repbase; DNA; NEM; 447 BP. XX AC . XX DT 01-MAR-2011 (Rel. 16.03, Created) DT 01-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Starlet sea anemone SINE2-1_NV non-autonomous non-LTR DE retrotransposon - consensus. XX KW SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; KW SINE2-4_NV; NVREP1; SINE2-5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-447 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-447 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-447 RA Kapitonov V. and Jurka J.; RT "A family of SINE2-5_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (01-MAR-2011). XX DR [3] (Consensus) XX CC The 5'-terminal ~80-bp pol-III region was derived from tRNA. This CC family was reported originally as the unclassified NVREP1 CC transposable element [1-2]. The genome contains ~100 copies of CC SINE2-5_NV. See also comments to SINE2-4_NV. XX SQ Sequence 447 BP; 115 A; 111 C; 107 G; 114 T; 0 other; gagagtggtg cgatagctca gtggtacggg cttcgcttct caagcaagag gaccagggta 60 cgaacccagg tcaggtcaac ttgggatttt ttcagaggtg taaaaacctg gctctctaca 120 ttggggactg tgtatccctc gtggctcgga tgactacgtt aaatggcggt cccgtctcgc 180 aaaaacctag ctaaccaacc tgttattgtg ggacgttaaa gaaccactga agaaggcaga 240 gtccatcttc agtgtctgta cttggccgca taaccaaaag gggcattaac atactaacac 300 tctctcatcc atgtaaactg cgtggcagca cagtgcgcct tatatagcag tccgaataag 360 accccgtgta atgtaaatcc agagtaattc agcctatggc tgcaattctg gataaagtcg 420 gcccagcttc ctttcctttc ctttcct 447 // ID DNA-TA-11_NV repbase; DNA; NEM; 238 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-11_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-TA-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-238 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-238 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-238 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-11_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 238 BP; 59 A; 66 C; 59 G; 54 T; 0 other; gaccgttttc acgatgttgc gcgcgcatcc aaaatgccac agactggcgg gccacagctg 60 atccaaaatg cggacgaagg ggaatttgac tctagcgcca aaactccgcg aaagaagcac 120 tctgacagca ttttctatag cttcgtctgt aaactccact tcgtacgcca ttttagatca 180 gctgtggccc gccagtctgt ggcattttgg atgcgcgcgc aacatcgtga aaacggtc 238 // ID Gypsy-4-I_NV repbase; DNA; NEM; 4261 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-4_NV autonomous DE LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4-I_NV; KW Gypsy-4-LTR_NV; Gypsy-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4261 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4261 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-4_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 533-533 (2007). XX DR [2] (Consensus) XX SQ Sequence 4261 BP; 1330 A; 962 C; 1142 G; 827 T; 0 other; tggtggcagc ggtggaatct tacttttaga cgaatacctc cagagagcga attcgaatta 60 gatgggtgaa ccagcaggag attccccggc gacggtagca actacggcag ccccgtcgcc 120 atacgtgata caagggatag cgccaccgag cgggctaaat ctcagagggg ccgacaaagc 180 cgcgaactgg aaggtataca aacagcaatg gcacatatac gtcattgtta cccagctaga 240 aaagcagagc gaggagtacc gcgttgctct gttcttatac tcaatcgggt cggaagccgt 300 aaagacctac aacagcttcg atatgacaga agaggatcgc aaaaagttga ctatgataat 360 caaggaattc gaccgctacg caatcggcga gacaaatgag acgtacgagc gatttcagtt 420 caacagccgt gaccaaaaag agggagagaa catcgacagg tatgttgccg atttgagaac 480 cttggcgcag acatgcgggt tttgtagatg tttacatgac tcgttaataa gagaccggat 540 cgtgttaaga attcgggaca caaacacacg caagcgttta ttaagacaaa cgaagcttac 600 gctggcaaag tcgatagaga tcgtcagaag cgaggaagta taagcgagtc aaatgaaatc 660 ccttggtagt gacaaagcgg aggaagtcca ctcggttgat tcgggaacga gacataagac 720 aaaggaggcg tccagacaga aatatgatcg gaatgcgaag accagacagc agacaaacca 780 aaagtcatgt agattctgtg gttacaagca caggcaaggg agagagcact gcaaagcctg 840 gaaccaaaca tgcggagctt gtggaaagaa gaaccatttc aaaagtcagt gcatgtccac 900 agaaaaggcg caccaaatcg tcgatgaaac gggaagttca agtgatgaaa gtgagtttgc 960 gttctccgtg acggaaaagc agccgctgac agaaactgtc aatgcgataa agccaagaga 1020 gatacacgca aatatgctga taggagatca gaaagtgaag ttccatgtgg acttccatgt 1080 ggagcagcag tgaatattct ccagagcaaa tacgtaaaga aaagcgacat aaagccgacg 1140 aagaaagtac tcctccaaat gtggaacaag tcggagctca aaccacaagg agtctgccgc 1200 gtgaacgtca caaatccgaa gaccagagag agctttgatg ttgaattcat gatcgtcaag 1260 gagaacccga caccactctt gggagtacac acaattcaaa aaatgaagct gatcaaagtg 1320 caggaagaga actttgaaaa ggtgtgcgtc accaaaggca aggtgcgcga agagagaaca 1380 accggaagta caacagcgaa gcagataata gagcagtaca atgatgtatt tagtggcgac 1440 ttagggacac tcgaaggaaa gcagcatctg gatgtagacc cgacagtacc acctaacatc 1500 gcaccgtcaa gacgggtacc ttttgcgctg aagccgcagc tggaagccga gctacaaaga 1560 ctgacggaca ttggtgttat agtgcctgtt gatgagccaa cggactgggt gaacaacctt 1620 gtggtggcaa ccaaggaatc gggagaccta aggctgtgct tggaccctaa gccactcaac 1680 aaagctttga agagggagag ataccccctc ccagttattg atgatgttct cccgaatctt 1740 tcgaaagcaa agatcttcac caaagtggat gcgcttaacg gatactggca cgtccaactt 1800 gacgatgagt ccattaagct gaccacgttt gacacgccct tcggcagatt tgcctggaag 1860 cggctaccgt ttgaaatctc ggtatctagt gagatgtttc aaaagaagct cacccaagcc 1920 ttggataggc tggacggtgt actcacggta catgatgaca tgcagtcggc gagactgagg 1980 aagaggcaca ggatgatcat gataagaatc tgaaacgttt tctacagagg tgtagagagc 2040 gcggcgtaaa attaaacaag aagcttcaac tgggatgcga agagatcccg tacttgggtc 2100 acgtgatcac gcgagacggc ctgaagcctg acccggatta ggttaaggct gtccaagaga 2160 tgccacagcc aactgacgta aaaggcgtta gaaggttttg tgggtttgtc aactacctag 2220 ccaaattcct cccaaacctg gcgagcgtca tagggccaat ccagcaacta acaaggcacg 2280 atgttgaatg gcagtggcga ccggagcacg atcaagcatt tgggaagatc aaagagttca 2340 caagcaaggc accggtactg aagtactatg aaccggacgt ggagctgact gtgcaatgcg 2400 acgccagtga gaaaggactg gggggcgctc taacgcaaag gggctagcct ttcgcctttg 2460 caagccgtgc actaacagag actgaacaaa gatatgcgca gatcgaaaag gagatgctcg 2520 ctgtggtata ctcactgcag aagttcgatc aatacgtcta tggaagagaa gtaacagtgg 2580 aaagcgacca taagccctta gcagcgattg taacaaagcc cttgaggagc gccccaaaac 2640 gcctacaggg tatgcttctg aagatgcaga gatactgcgt taccattgta tacaagcccg 2700 gaacggagat gtatttagca gacacgctaa gtcgggcatt tttgcagtca tcaaagaatg 2760 cacagaggga gttcgagaga atcaatgcgg taaagttact cccaatcact gacgagcgtc 2820 tagccgagct caagaaacac accacggatg acgaggtcct acagcagctg agagtgattc 2880 agatcggctg gcctgaggag aggaaagaac tccctgcttg cctgatccct tacttcagtt 2940 ctcgggatga cctagctatc tacgatggtc tagtgttcaa aggagagcgt ctaatcgtcc 3000 cgaaggccat gcgtgcaagc atgaaagaaa ggctacacag ctcacacatt ggggtgaatg 3060 gatgcctacg tcgggcgaga gaatgcctgt tctggcctgg catgaccagc gagataaaag 3120 aattcatctc gcagtgcgag agctgttgca tgtacgacaa caagcagcaa agagaaaccc 3180 tgatgagcca cgagacaaca gagcgtccat aagagaaagt cggcattgat ccattcacaa 3240 ttgatggtaa agattacctc attgtggtag attacttccc gggattctgg gagattgacc 3300 cacttacatc cgattgcaaa gcaccaaccg tcgtcaagaa actcaaggcc cattttgcta 3360 gacatggaat tccagacgta gtcatcagcg acaatggacc acagtttgtt gtgaagagtt 3420 tgcagcgttt acgaagatct ggggttttga gcacagaacc ggaagcccag gacaccagca 3480 gtccaacggg aaagctgaag cctctgtcga gcaagccaag aagctcattc ggaaagcgaa 3540 atctagcagg gaagacatat acttgggatt actcgcggtc aggaacacac caactgaatc 3600 gatgggctct agtccggcac agcgtttgct aggaagaaga tgcaagacca ggctaccaac 3660 aacgagggag ctgttgcgtc cccagacagt gtcgactgag ctaataaaga agcagacgaa 3720 agagcagcaa caacgacagg cgaaatacta cgacagggga gctcgcgacc tggagccttt 3780 ggatgaaggg ggcgtagtga gaatgaggcc gtttaggctt gggaagaagg aatgggacag 3840 agcgactgtc cgcaaacggc ttgacgagag atcatatgaa attaagaccg acgatggtac 3900 aacactcaga agaaaccgtg ccgatatccg gatgcagcag acaccatccc ctgaagacca 3960 gagcctcgta ccggcagcca cagtggctgg tccagaccct ccatcagtat cgtcaccagc 4020 agctacgtct gccacggaga aactcccacc aagcgacaaa agaccagaaa cccctacaag 4080 accaaagcgg atcaccaggg aaccagtcta cttgaaggac tatgtccgac gctgactttg 4140 tatatctgtg tataacaaga gacttgttct agtgcattcg agcattattc tttcattttg 4200 ttttgttatc ttcaatcata ttcgaattga acttcagaca ccttctgtag aggagggggg 4260 a 4261 // ID Chapaev-2_NV repbase; DNA; NEM; 5527 BP. XX AC . XX DT 01-APR-2011 (Rel. 16.04, Created) DT 01-APR-2011 (Rel. 16.04, Last updated, Version 1) XX DE Chapaev-2_NV non-autonomous DNA transposon - consensus. XX KW Chapaev; DNA transposon; Transposable Element; nonautonomous; KW 4-bp TSD; Chapaev-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5527 RA Kapitonov V. and Jurka J.; RT "A family of Chapaev-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (1-APR-2011). XX DR [1] (Consensus) XX CC Copies are 99% identical to genome. These with both TIRs intact CC are flanked by 4-bp TSDs. The internal portion has low coverage. CC So the protein sequence may have some mutations. Nevertheless, CC most of the 931-aa protein seems to be fine. Including its CC exon/intron structure: 10 exons, which is identical to the CC exon/intron structure of the Chapaev-1_NV TPase (supported by CC FGENESH). XX FH Key Location/Qualifiers FT CDS join(486..1433,1532..1824,1926..2064,2680..2774, FT 3052..3128,3199..3404,3495..3805,3895..4114, FT 4198..4381,4457..4776) FT /product="Chapaev-2_NV_1p" FT /note="Chapaev TPase." FT /translation="MAGATSEGERINSIHLQNLEKICRVCGNRLKKYKDRF FT ETSYNCKDHVVFLAETYNLSIEKDDQTIHPSKFCRECFRSYRIHTREVVFW FT EKHTDTCSTCEKEEFARKGGRPKKSKRGGGNTRKAQRRISFVDSVAALQDQ FT IADVTKEIASRRIDNFSERFELNEVRKDDFYCPICSELLDKPVETIFTHNA FT CGACLTQALAVNSSCPVCKTILSSGDDIKKFNRTLLGLIESQIYKCKGCGK FT EVQYQHCGEHECRPSEGSAPPNVAQQQPSQTISEALKDLRDGKMNREVAEL FT GTAVVRELLKRSADKTVSLPCRGKSLVLKHTPNSQKPNDEVSARHLRRRVS FT HLQKVGGRLSAGGEMDTLVIHQLRQKEKKEREAVLKKALGKELILQIPEGE FT ALAMKADLRLPWFALGKLRRWFSNWGIKMDSEKKQRSQKEELIGDDVVAEF FT LPLKHTKQGNRNAPRENRDVTVVKQTACAYVEDLGKKITSYLDGSEKDKNV FT VLFAFGDYEYICRMLGISGASGRYPCVWCLIHNQDMRKPPEERDPIQPRTP FT EHMEEQLQNFLNEGNGDLKKAKDYFNVIHEPLLDIPSDRICVPGLHISIGL FT FLKFYNLFMTECESLDILIAKHKAKTSGKPTGDTDFDQYVKTLHSAERHRE FT KARKLREQAKQAQEHITFKITNDGLQCDEEYVHPYLTGLVKLCRQREYAFL FT NTRLLFIQSGKIIFFRKKLACDLVKDLEFDSARGKIHQAMEQQLQQINIVR FT QAYHSNSYVGNHPKNIEAVCHRVIEVCQTQCPELLGQARTVKAKFQQLFSL FT FSVCHFKYNSATPMSQEQLSILEQDIKLLCGYYRETFPDESFPPKFHMLEH FT HVVEFIRRWRFPLGFFGEQGGESIHHELQALHRTHSQTKPATNRLKAIIQD FT HYVIVAPANRNVIPEKKRRNLKSKEKQ" XX SQ Sequence 5527 BP; 1803 A; 1178 C; 1181 G; 1365 T; 0 other; cacggctatt tcaaacagcc gctaagagga catttagctg agcgaccgcg cttttaataa 60 cagaccggaa gtcgtggtta ttaactctgt taatgactaa cgcgcggcgc tcggcgcacg 120 cttcctcgat acttggaagt aaaaaacgtg atgcgtacca gctagtgttg aaagacaagt 180 gtgcgcaatg agcattttta gaatatttag gaaattacct cacagataag gtgctataag 240 cggcagtgcc atgaatactg taacaataag aagagtttac tttacagtgc taaggcaatt 300 aatggcggaa acaaattgcg caaaataaat gacttcatgt tcagactatg atcttgcctg 360 agtttttata tcgcaaccac tgcattcaat gcaatctccc ccctttacag ttctcatttc 420 tacactcata cggtatcgcg aatgcttttt gactgatttc tgaacttact taatatttgg 480 agttcatggc cggcgcgacc tcggaaggtg aacgcattaa cagtattcac ctacaaaatc 540 ttgaaaaaat ttgcagagtt tgtggaaatc gcctcaagaa atacaaagac cggttcgaaa 600 ctagttataa ttgcaaggac cacgtagtat ttcttgctga aacctacaat ttgagtattg 660 aaaaggacga tcagacgatt cacccatcga agttctgtcg tgagtgtttt cggtcgtatc 720 gcatccacac tcgcgaggtc gttttttggg aaaaacacac tgacacttgc agtacttgcg 780 aaaaagaaga gtttgcaaga aaaggaggaa gaccaaaaaa gtcaaagcga ggtggtggaa 840 acacaagaaa agcgcagcga cggatctcct ttgtagactc tgttgcggcg ttacaagatc 900 aaatagccga tgtgacaaaa gagattgcaa gtcgacggat tgataatttt tcagaacggt 960 tcgagttgaa cgaagtccga aaagacgact tctattgtcc aatttgcagc gagctattgg 1020 acaaaccggt cgagacaatc tttacgcata atgcttgtgg cgcgtgcctt acacaagccc 1080 ttgccgttaa ctcttcatgc ccggtgtgta aaacaatcct cagttccggg gacgacatca 1140 aaaagttcaa ccgtacgcta cttggtctga tagaaagtca aatatacaag tgcaaaggat 1200 gcggtaagga agtacaatat cagcattgtg gggaacatga atgtcgacca agcgaaggca 1260 gcgccccccc aaacgtcgcc caacagcagc catcccagac aatcagcgag gccctaaaag 1320 acctgagaga tgggaaaatg aatagggagg tcgccgaact ggggactgca gtggtgcgag 1380 aacttttaaa gcgctcagct gacaaaaccg tctcactacc atgccgcgga aaggtaaata 1440 cccacccacc cccccccccc cccgaaaaaa aacattcaat ttgaccattt cttcttgtca 1500 aaataagcta attactgttt ttgatccaca gtcattggtg ttaaaacaca cgccaaattc 1560 ccaaaagcca aatgacgagg tttctgcccg gcatttgaga agaagggtct ctcatttaca 1620 gaaggtcggt gggaggctaa gcgcgggtgg ggagatggac accctggtta tccatcaact 1680 gcgacaaaag gagaagaagg agcgcgaggc agttctaaag aaagcccttg gcaaggaact 1740 catcttgcag attccagagg gagaggcctt ggccatgaaa gctgacctcc gcctaccttg 1800 gtttgccctt ggaaagctta ggcggtaggt ttttatttat aaaaatctaa attaatcctt 1860 tgttagaaac gaaataattg gttgaaatag caacatatct taaagtattt gtttcgctac 1920 gacaggtggt ttagtaactg gggcattaaa atggacagcg aaaaaaaaca aagatcacaa 1980 aaagaagagc taattggcga tgacgttgta gccgagtttc taccacttaa gcacactaag 2040 cagggaaaca ggaatgctcc acgagtttct accacttgag cacactaaga agggaaacag 2100 gaatgctcca cgagtttcta ccacttgagc acactaagaa gggaaacagg aatgctccac 2160 gagtttctac cacttgagca cactaagaag ggaaacagga atgctccacg agtttctacc 2220 acttgagcac actaagaagg aaacaggaat gctacacgag tttctaccac ttgagcacac 2280 taagaaggga aacaggaatg ctccacgagt ttctaccact tgagcacact aagaagggaa 2340 acaggaatgc tccacgagtt tctaccactt gagcacacta agaagggaaa caggaatgct 2400 ccacgagttt ctaccacttg agcacactaa gaagggaaac aggaatgctc cacgagtttc 2460 taccacttga gcacactaat aagggaaaca ggaatgctcc acgagtttct accacttgag 2520 cacactaata agggaaacag gaatgcccca cgagtttcta ccacttgagc acactaagaa 2580 gggaaacagg aatgctccac gagtttctac cacttgagca cactaagaag ggaaacagga 2640 atgctccacg agtttctaac acttgagcac actaagaagg aaaacaggga tgttacagtg 2700 gtgaagcaaa cggcatgtgc ctacgtggag gatcttggga aaaaaataac atcatatctg 2760 gatggaagtg aaaagtaaga tatatctcta aaataaacat attccattat cttcctatat 2820 gaccaaaatg ttttaattta taaaaaaaaa ttgaaaaagt tacattcatt attaaaaaca 2880 gggccggagt gctgacatgg cacaaggata caagaaacaa cctctgtgtg gtttcttccg 2940 actacaaaga gcagctgaat ttgttggaaa agtggcagta agtcattaac tatgcaaaaa 3000 tggatttcaa tcaaaacaaa tacaataaca ttaccctgtt tttaactcta gggacaaaaa 3060 tgtcgtcttg tttgcttttg gtgactatga gtatatctgc cgtatgcttg gaatatctgg 3120 tgcaagcggt aagaaaagcc aataagctga tttatgatag ataaactagt ttagtgacct 3180 gtgttattta ttcaaaagga cgatacccat gtgtctggtg cttgatacac aaccaagaca 3240 tgcggaaacc acccgaggag cgtgacccca tacagcccag aacacccgag cacatggaag 3300 aacagctgca gaatttcctt aacgaaggaa atggggacct gaaaaaggct aaagactact 3360 tcaatgtcat ccacgagcct ttgttggaca tcccaagcga tagggtgcag ataacattat 3420 ttgtccaatc tcattgttca aagtagaaaa attgcatttt gctcacaccc tatacttttt 3480 ttatttattc acagatatgt gtgcctggcc tacacataag cattggactc tttctcaagt 3540 tttataacct tttcatgact gaatgcgaga gccttgacat attgattgct aagcataagg 3600 ccaagacatc tggtaagcca acaggtgaca cagattttga tcaatatgtt aagactctgc 3660 attcagctga aagacaccgt gaaaaggcca ggaaactgag ggagcaggcc aagcaagcac 3720 aggagcacat cacgttcaaa atcaccaatg atggcttaca gtgtgacgag gaatatgttc 3780 acccctacct cactggcctg gtaaagttag tagggaatct ctcaaaaagg gcagaaaatt 3840 aggtaggttt gaatataatt tttagcttga tttatccaaa atgaatttga cgaggctatg 3900 cagacaaagg gagtatgcat tcctaaacac acgactcctg ttcattcaat caggtaaaat 3960 aattttcttc cggaaaaagc ttgcatgtga cctagtgaag gatttggagt ttgacagtgc 4020 aagaggaaag atccaccaag ccatggagca gcagcttcag caaatcaaca ttgtgcggca 4080 agcataccac agcaacagct acgtgggaaa ccatgtgaac attgcattga aggtgtgtac 4140 aatatttact aaagctacac agatgttaaa gattttgtcc acattttgtt cacaaagccc 4200 aagaatatcg aagccgtttg ccacagagtc attgaggtct gccagactca gtgtccagaa 4260 ctacttggcc aggcaagaac tgtcaaggca aaattccaac agttgttcag cttattcagt 4320 gtttgccact tcaagtacaa ttctgcgacc ccgatgtccc aagaacagtt atcaattctg 4380 ggtaaatacg aattgaaata gtgccattct acaacctgaa tattcaaacc tattttgact 4440 tatttttcgc caacagagca agatatcaaa ctactatgtg gttactaccg cgaaacattt 4500 cctgatgagt ctttccctcc caagttccac atgctggagc accacgtcgt ggaattcatc 4560 aggcgctgga gattcccttt gggctttttc ggggagcagg gaggcgaatc aatccaccat 4620 gagcttcagg ccctgcaccg tacgcacagc caaacaaagc cggctacaaa tcgcctcaaa 4680 gccatcatcc aagatcacta cgtgatcgtt gcaccggcta acaggaacgt tattcctgag 4740 aagaaacggc gtaatcttaa aagcaaagaa aagcaatgaa gttagaagtt agaattaaag 4800 gccgatatca ttgtaatata tttgtataaa ttaagtaact acttatagct ttcggttgaa 4860 tcaggcagac tccattattt tagcaaacga aatacgaaaa cataatattc atactaatta 4920 ttgtagaagc ttgcaaaata tttaagttgc ttaaagttat cgtagaggtt ttctgaaacc 4980 atagcattat gatagtaagc gactaacttt atgtaaaacc aatttgaaag ccacaatcaa 5040 taaaaacagc tgaagcctct aatggcgatg cgatacacaa ccaacaaaac atgccaagac 5100 ggaaaagatc gtagaatgtt taataatcat tcgcgacacg aacttacctc gtgattccat 5160 tcatgagagc taatacttcg accagttacc ctcagatttc cttggaaaac tccgacaaga 5220 cagcaaaatg aagccattcc tagctaaatg ggtaatattt ttatcgaggg ggaattcgat 5280 tgccatcatt ataggtcgat tttctcgaga attttagcaa aattgatgcc gttttctgtc 5340 ctcaaggcca aaaacccgct tcccctggat catttgcata ttagtggctt aaaatatgct 5400 gtttttgatt ggtttaaaat acaatgggct tttccaacta agacgccatc tttacgtagt 5460 caagggcaat gaagaccgct tacgtactgt tcgcgggcga ctaaatgtcc tcaccgacga 5520 tgccgtg 5527 // ID Gypsy-11-LTR_NV repbase; DNA; NEM; 182 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-11_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11-I_NV; KW Gypsy-11-LTR_NV; Gypsy-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-182 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-182 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-11_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 454-454 (2007). XX DR [2] (Consensus) XX SQ Sequence 182 BP; 45 A; 32 C; 44 G; 61 T; 0 other; tgttgtaata tgtatattgc cctccttggg ttccctgtgg cccctgatgt ttgattggga 60 ccccccgtag gggctggttc ctcgttgaag ctcggagtta gttgtaattt agattttgag 120 aaatattagt tgaattaaac cacgaattga aagcataatc gtgaggatct gaacttataa 180 ca 182 // ID TE-9_NV repbase; DNA; NEM; 314 BP. XX AC . XX DT 10-MAR-2011 (Rel. 16.03, Created) DT 10-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-9_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP73; TE-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-314 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-314 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-314 RA Kapitonov V. and Jurka J.; RT "A family of TE-9_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (10-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~92% identical to the consensus. It was reported CC originally as the unclassified NVREP73 transposable element. Its CC 117-bp 3' terminus forms a palindrome. XX SQ Sequence 314 BP; 98 A; 64 C; 63 G; 89 T; 0 other; ttagtatata aaactcggga acctcgcaag aacaagcgat ttgattggtt gagaaactcg 60 ggataaaatg caatatacac ctcctaggag gtggatattt tcctgcgccc cgaaatcaag 120 caaaatggcg ggtgtaacag ccgatttgca agtgtttccg aaaagaaaat tgctctaaag 180 ctcgttttat atactaaaac aattatacca tttccatttc ggcggatagt ggctttaaaa 240 atatctacct cgagccttcg gctctcggta gatatttcgc cactatccac ctcaatggaa 300 atggtataat tgtt 314 // ID Copia-3-I_NV repbase; DNA; NEM; 2712 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Copia-3_NV autonomous DE LTR Retrotransposon - consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; 4-bp TSDs; KW Copia-3-I_NV; Copia-3-LTR_NV; Copia-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2712 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2712 RA Kapitonov V.V. and Jurka J.; RT "Copia-3_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 384-384 (2007). XX DR [2] (Consensus) XX CC Copia-3_NV is a family of recently transposed retrotransposons. CC Copia-3-I_NV is the internal portion of Copia-3_NV flanked by the CC Copia-3-LTR_NV long terminal repeats. The consensus sequence is CC not complete and the polyproteins-encoding ORF is corrupted by CC mutations causing stop-codons and frame shifts. XX SQ Sequence 2712 BP; 890 A; 560 C; 687 G; 575 T; 0 other; cgttcagaga aacattttca acaggttatg ggcccagcag tgcaagcctg aagccgaact 60 cgtggatcgc cattttgatt taagtgacct ggccttttgc aaatgattgc gttgcaagcg 120 aaatcttggg atacctgtgg aagttctaaa gcatggctac agactcgaaa accgtcacag 180 tagtttcgct gaatgggaag aattacccta catggaaagt agtgtcggat ggctctaatg 240 agagacggac tttgtgacat tgtcatcgct aaggaagttg cacccgctca gacggaacgg 300 caaaatccct cagtggtgga gaatattttg tcacatttat tgatgaaaag actcactacg 360 tgtgggtata tatcctgaag cgcaaggacg aggtcttcca taagttcctg gagtggaaag 420 cagtggagga aaagtctact ggaaaaagac tgaaaatcct gcgcacggat aatggaggag 480 aatacacctc agcagaattt gaaagctacc tgaaatctga gggtgtgcga cgtcaactaa 540 cgatcccgaa aacacctgaa cagaacggag tagctgaaag gatgaacaga actctggtag 600 aaactgtgag gtcgatgtta gcagacgcgg agctgccacc tatgttctgg gcagaagcat 660 tatcgacagc ggtgtatctg agaaacagaa gtccaaccaa agcgctgaag tacatgactc 720 cgtacgaatc atggacaggc gaaaaaccca atgttgagca cttgcgcact tttgggtgca 780 cggcatacgc acacgtgccg aaagatgaaa gaaagaagtt ggactccaaa gctaagaagt 840 gcatactact tggatacggc gaagaaacca aaggatacag actctatgac cctgagaagc 900 gactcgtgtt ttacagccga aatgtcgttt tgagtgaaga aaaggaaggt gaagttaagg 960 aggagtcgaa ggcagaacaa aaagttaaag aagaagaacg cctcgtagag tttgactgcc 1020 tcccaggaga gtctaaaaac cacggatgaa aaagacgagc agcctcaatc acgccgatca 1080 accagaaaga caaagccacc tgactactat ggcgagtggg caacagtagc aaatgctaag 1140 ctgagagaac ccaagacagc aaaaaaagcc ttagcttgtt acgacaaagc aaaatggcgg 1200 gaagcaatga acaaggaact tgagtcgatg aaacagaacg aagtctggga tcttgttgag 1260 ctcccaaaag acagaaagcc agtgggcagc aagtgggtgt tcaagctcaa gaccgatgct 1320 gacggaaaca ttgagaggta caaggcccga ctcgtggcac aagggtacgc gcagcagtac 1380 ggacttgact atgacgagac gtattgccct gtcgccagat ttgagtcagt acgcacagtt 1440 atcgccatgg caacacagca tggtttacag ttacaacaga tggatgtaac aactgcattc 1500 ctaaatggag aactacaaga ggaagtctac atgaaacatc cagagggttt tgtagtcaaa 1560 ggcaaagaac atttagtttg taaactaaac agaagtatct acggcttaaa gcagtctcct 1620 cgatgctgga atcccgtact agacgacaag ctaaagaaga tggggttcgc tcaaaccact 1680 ggagaccctt gtatctacac agcccttgag ggagagatgt ttataatagc cgtgtatgtt 1740 gccgatatac tactggccgg taaaagcggc aagcgcatga ctgaagtcaa gcaagccctc 1800 tccaaactgt tcaagatgaa agacatgggc gagctgcatc atttcttggg agtgaaagta 1860 atccagaaac cagaaaccgg agagctatgg attggtcagt cgacatacgt gaaaggtgtc 1920 ttagagaagt ttggtatgga aaactcaaaa ccaatcagta caccagtcaa cgcaagcacg 1980 aagctagtca aagctacaaa tgactacgag aagaaagacc acacccaata ccagtcagcg 2040 gttggtagtc tgctattcct gtcaactaga acaagacctg acattgcatt tgccgtcagc 2100 aacgttgcac aattctgcgc atagccgaca aaagagcact ggacagctgt taagcgcatc 2160 ctgcgttatt tgaatggaac aagagactta ggtctactct acagcaaaga cgaggcaaaa 2220 gagtgcatag gatactctga cgcagactgg gctggagacc tagacaaccg cagatctaca 2280 tctggatata tgttccagat gggaggagca gcgattagct ggagaagcaa gaaacaaaca 2340 tgcgtactat ctcgactgca gaagcagagt acatggcact agccagcgca gctcaagaag 2400 cgatatggat tcagcaactt ctatcagatc ttaaactgaa atatattttg ctattgtgat 2460 ttatgaagat aatcagtccg ccatctgcat gaccaagaat ccacagtttc atagccaagt 2520 ttttagatat caagcttcat tttgttcgcg agcaagtgag taatggcgtc cgtgaaagta 2580 agtattgcaa gacagaagat atgattgctg atatgttaac taaaggtctg agtcaactac 2640 agttttcaaa gctacggaac aaggctggag ttaagccagt tactggatag ttcacttgcg 2700 attgaggagg ag 2712 // ID Harbinger-N20_NV repbase; DNA; NEM; 401 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP67; Harbinger-N20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-401 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 178-178 (2007). XX DR [1] (Consensus) XX CC Harbinger-N20_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N20_NV CC transposon is characterized by 53-bp TIRs and 3-bp target site CC duplications. XX SQ Sequence 401 BP; 96 A; 107 C; 89 G; 109 T; 0 other; gaccctgtcc ccacgtatcc gttttcgttt gaaaacgcaa cctttttgtt ccgttttcaa 60 aaaagatccg cgtccacacg aagcgttttc attttgatac gacccgtccc cacgaaaacg 120 cagaaacgat acgaaaacga taacaagttc tacagcgcat gcgtactcgc gcgccaagtg 180 gactggacct gagttatcac gccatcgttt tcgaaaggtt ccgttttcgt ccgtccccac 240 ggcaccgaaa gggtatcgtt ttcaaattgt tccactctgg agatcgtttt caaatcgttc 300 cgttttcggt catcgttttc gcgtttccgt gtggacgata cccgtatccg taacaaaaag 360 gttgcgtttt caaacgaaaa cggatacgtg gggacggggt c 401 // ID DIRS-42_NV repbase; DNA; NEM; 2061 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-42_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-42_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2061 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2061 RA Kapitonov V.V. and Jurka J.; RT "DIRS-42_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 439-439 (2007). XX DR [2] (Consensus) XX SQ Sequence 2061 BP; 537 A; 450 C; 452 G; 622 T; 0 other; ccgcaacccg tcccaacgcc agtaagggtc atcagactaa atgacctcct gcaagcatat 60 gatagccaga gagctacttt tatcagggaa ggtttcacct acggttttag agttaatttt 120 ttgggagcta ggtcctcctt tgaaacaaat aacttgttgt cagctgagca aaatcctgaa 180 gctgtttctg ctaagctcac taaagaaatg gaacttaatc gtattgaggg gccataagca 240 acccctccac ttcccgattt ccgagtttca cctcttgggg tggtgcctaa gaaaacggct 300 ggtgagttta ggctaataca tcaccttttt caccccaagg acgcctcagt gaatgatggc 360 atagccactg aacacacaag tgttcattat gtctcaatgg atgatgcaat tgcaatgata 420 aagagggtag gcgtgggttg ttatttgtca aaaccttata tcaaaaatgc cttccgggta 480 cttcccattc acccggaggg ttacaacctg ctaggtatga aatggttggg ttactattat 540 ttcgacaaat gcctgcccat gggccttgct agtagttgta aaacatttga agaggtcagc 600 accgccatcc agtggattgc tcaacataaa agaggcattt caaatattat tcacattttg 660 gatgactttc tcattatcaa acctacacat aacatttgac aagccagcct ctctacattt 720 ctggaacttt gtagttttct aggggtcgca atgacacccg aggaaattga gggaccttcg 780 caggtcctat gctttgcggg tatcgagata gatttcctaa attcagaggc tcgccttccc 840 attgaaaaat taaccaagtg cagagaactg attgattgtt tcatgggtcg gaaaaaagtc 900 actctcaaag aattacagtc tttgattggc aatctcaact ttacttgctc cgtagtgatc 960 ccagggaggg ccgtccgtcc gtcgcatcat agaccttaca atagggctta ggcttcctag 1020 ccacaagaaa aagctgtctc gtgaggttaa ggctgaccta ttaacttggc attctttcac 1080 tctttcaatg gccgttcgtt cgttttgaat gatatttggc tatccagtga aaatttgcaa 1140 ctgtacacgg actcgtctgg tagtcccggt tttggggtag tttttggtaa ccattggtgc 1200 tatgggtcgt ggtccatgga ttggcagaac aggaacatcg cctttttaga attttacccg 1260 atcgtcttga gtctgttctt atggggtcag gatatggcaa aacaatgtat cactttttac 1320 acagataacg aggctctcgt gcatgtgatc aatcgttgta cctccaaaga caaatatttt 1380 atgttctttg ttaggaaact ggtcttagtc tgcttgcagg aaaacataca cgattgccaa 1440 ttacattgcc tatacttaac cgtctagtcg ggtctgcatc tctgatatgc agcgatgact 1500 accaagcagc tatgttccaa gctatgtgcc ttcttgcatt ctatgcattc ctggttggtg 1560 aatttacctt atcgtcaaaa tacaacaggg agaatgtttt acagctttct caattaacta 1620 agcttgtcaa caagggtgag gttgttgcct tgaaggtaac attcgttcac tttaatcatg 1680 ttgcgttgaa tagacaatat tccattgaag tgggtaaaca aagtgatggc ttgttcccag 1740 tgaaagttct cttagcctat cttgataggc gcggccgtac ccctggtccc ttgttcattg 1800 acaaacatgg ctctcctgtc ccccgttcta atttttctca gcttctcgaa gcagctctta 1860 aggtcaatcg gctagacccc aaacgtttta aagggcatag ttttcgtata ggtgctgcat 1920 cctttgcggc tgacaaaggg atgtctgacg cccaaatacg tttactgggg cgttggaagt 1980 cagatgcgtt taagaagtac attcgggtcc cctgtctttc tcaaacgatg taatgcaata 2040 atttttgaca tttagcaagg g 2061 // ID Gypsy-45-I_NV repbase; DNA; NEM; 3998 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-45_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45-I_NV; KW Gypsy-45-LTR_NV; Gypsy-45_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3998 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3998 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-45_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 523-523 (2007). XX DR [2] (Consensus) XX SQ Sequence 3998 BP; 1270 A; 833 C; 944 G; 951 T; 0 other; tggtaccagg agtgttataa aggaagtcca gggcgatgga gaaaatcaag ccgccttcag 60 aacttgatat agatagcaga aatctagcgg agacgtggcg cgagtggcag gagagttggg 120 agctgtacga gatttcgagc ggtcttacag cgaaagagga gaaagttcaa gtggcgacgc 180 tgtatagtgt actaggatta aaggctcgca gagtactgaa aacgctacca aatgtcccag 240 aaagtctggc agatagaaag gtgaaggaca cgctgaaagt tttaaaggaa tactgcatgc 300 caagaaccaa tgtgacctac gaacgttaca tttttcgaac caccacacaa gacgatcgac 360 cattcgatgt ctttttgaca gagcttcgcc acaaggccac actttgtgaa tttggagaga 420 ttaaggactc gctgatacga gaccagatag ttataggaac aaacagccct gtattaagag 480 aacgtctttt acgggaaccc gaattaacac tcaccaaaac gatcaatctt tgccgtgcct 540 ccgaacaagc catcgaacaa tcgaggctga tcacgaagcc tgaagatcac caagaaacta 600 gcaacgtcga ttcagttcaa gcgcgtgcta gaccgagccg tttcgacagg aaccaaaatt 660 tctgtcgatt ttgtgggctg caacatgaca ggggaaactg tccagcttac aacgccattt 720 gccgtcgatg caaagctaag catcactatg cacgctgttg ttcaaaacag atttcgacgc 780 ctgcaaaaca agttcgtgag gtcgaattat aacaagatga cgactaccag gagacgtaca 840 aagaaatcga aagtctgtat attgaggaaa taaccagtcc aagaaagaag tacctagagc 900 agcgccttat tgttggaagc cagcccatgt ttttcaagtt ggacacagga gctgagtgta 960 atgtactccc taaaactgca gtgaaagagc tacccaactg taagatagaa cctacaaaca 1020 ctaatcttag atcatttggg ggcaaccccc taaaaactgt aggcaaatgt tatgtaaaca 1080 cttatgtaca agaccgaggg aaccctgtgt tgacagaata ttatattgta gatcatgatg 1140 taaagcccat tctgggacta gaatcttgcc ttaagttagg tttgattgct gtgagtggaa 1200 gtgccacgcc caagggttta agcattaata ctgtggaaca gccacacaac ctccttgatc 1260 agtttgaaga tgttttcaca ggactggggt gtgttgatgg tgagtatgac attaacttaa 1320 aagagggtgc tagacccaca attcaacctc agcgtaatgt cccattgcga ttagttgatc 1380 agctgaaatc aacaatccat gatttggaaa aaagggtgta atagccaaag tcaatgagcc 1440 tgtggactgg gttagcaacc tagtaatcgt agaaaaaaag acaaatccct gaggctatgc 1500 ttagaccccc ctgacctcaa cgaggcaata gtaagagagg attataagcc ccctacaatt 1560 gagaaaatat caagtacgtt gaatgggtgc aaggatttca ctgttgtaga tatgtctagc 1620 tgctataggc ataagaaact tactgacgca gcatcactac tatgcacatt taacacccct 1680 tttggcaggt atcgctccgg agaatgccat ttggcattcg tgtgctagcg aggtagcaca 1740 aaaaatggtt gaggaacact ttggtgacat tgagggtgtg cttcctgtct atgatgatat 1800 aattgtttca ggaaaaacag aggcagaaca tgacaaagca ttgcgcaagg tactggagag 1860 agccagagac aggaacatta gattcaataa ggagaagata cagtatcgcc tggacaaggt 1920 gagttacatg ggggaagttg ttagtgaaaa gggtttcact ccagatccat ccaaggtttc 1980 agctattttt aacatgccta ccccaaaatg caagaaagat ttgcagaggc tgctggggat 2040 gatcaactac ttgtcaaagt atgttgccaa tatggctgaa ctaactgccc cactaagaac 2100 cctgctaaag aaagaagtag cttgggtttg gtaccctgaa catgatgcag cattaactaa 2160 gtttaagtca gtacttacta gcaaaccggt gctgcggttt tacgacatca acctacctac 2220 caccctacag gtggatgcct caaagagtgg gctaggtgcc tgtctcttac agaatggtca 2280 gcctgtggct tatgcctcta gggcaatgac aagtgctgaa caaaattatg cacaaataga 2340 gaaggagatg ctagccattg tttttgggtg tgaaaggttc aacatgtaca cgtatggggc 2400 agacattgaa gtaatgtcag accacaagcc tctagaatca attttgagaa aacctctcca 2460 caaggtgcct ccgcggctgc agaggatgag gttgcggctt caaaaatatc atgtcagggt 2520 ccgctatgtg cctgggaaat atttgtacat tgcagacacc ttgtcgaggg cttatgacga 2580 ggaagcacca acgcagtata atgacacatg catgcatgat gagatggagc acatggtcca 2640 ttgcatcatc aaggacctgc ccatcacaga cgtgaaactg ttacagctgc gggagattac 2700 taaggaggac caggacatgc agttgttaag taagtacatc agggaagggt ggccccaaaa 2760 caggcaaaat gttccaacac aagtaagacc attttggaat gtgcgccacg atttacactt 2820 attagacggt ctagtgatga aaggccacag actggtaatt ccagtgtctt ggagatctaa 2880 tatcctagag caagttcaca atggccattt tggaattgaa aagagtaagg ctagggcacg 2940 ggcagtagtt tactggcctg gtctgagtgc tgacatttcc aatttaatct ccaagtgtga 3000 caaatgcttg agtttgcaga agaaacagca aaaagagccc atgcaaccga gagaaattcc 3060 actgttgcca tggcaacata ttgcagctga cattgctgaa tatgaaggaa agccctatct 3120 agtggtaatt gattactatt caaaatacat tgaggcactc aatgggggtg ttaccaaggc 3180 cctgatggaa atcttttcca gacatgggta ccctgagact atcacagcag ataataatcc 3240 agtcaactct gtggaaatga atgagtatgc caatcaatgt ggttttaaaa ccatatatac 3300 cagtccattg tatagtcagt ccaatggact tgcagagaaa gcagtgggaa tagtgaagag 3360 tattctaggc aagggtagta acttgaatga agggttgatg gtgtaccgca acacacctgt 3420 gagtaacttc ccttacccaa ccagatgatt atgggtcgcc aagtgcgcac caagttgcca 3480 ggtcacccta atgctctagt gccacgtgtt tataatgata tacgctcgca gttgctggat 3540 cgccagttga aaactaagga gtattatgac aaaggatcaa aagccctccc cccattgaaa 3600 aagggtgaca cggtaaggtt tcagaagcca ggtcagaaaa catacacccc tgctagaata 3660 accagaaccc atgacacacc caggtcgtat gtgataactg atcaagctgg gagagaatac 3720 cgcagaaaca ggcgcgcact cagcaaatct aacgaaccac cactgtatgt acaagataat 3780 gttttagaag acattataga cttagagaat gaaaccactg aagtcaaccc agcgccacgc 3840 agatcaactc gcatcagatc agcaccccct tggcacaatg actatgtcat gggcacatag 3900 cccagtccta ttttacatat acacatactc catgttagaa tttttttgtt atgttttgat 3960 actttcactt aatatcatag cttagcttaa aagggaga 3998 // ID Gypsy-47-I_NV repbase; DNA; NEM; 4049 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-47_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47-I_NV; KW Gypsy-47-LTR_NV; Gypsy-47_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4049 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4049 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-47_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 527-527 (2007). XX DR [2] (Consensus) XX SQ Sequence 4049 BP; 1196 A; 907 C; 1005 G; 941 T; 0 other; tggtggcagc gttttaaaag cagaaatgcc ggacccagaa gatgcctcaa gctctcataa 60 actccagata cagtttcctc ttccggaaaa gttcgcttcg ggcaaacagg gcctcgagca 120 aattgagaac tggacgaaat ggatcaagag atttgaacgg tacaggactg cttcgggact 180 caaagacaag acggataccg agcaggtcag cactctactc tacgctatgg gagactgtgc 240 agatgatatt ttagcgacgt tgaaagtcga cgaatcgaag gcgagttata gtgagatgaa 300 aacggcactc gagacgtatt ttggcgcacg ccgaaacgtt gttgtggaca gggctcgatt 360 caacaggcga gttcagaagc caggtgagtc cattgactcc ttcatacaag atttatatcg 420 cctagcagat gaatgcaatt actctactct gaaagaagag ttgattcgag atcgcctcgt 480 agtgggagtt ttagacgaaa atctctcgga cagactgcaa cagaaagcag atctaactct 540 tgcccaggct attgaacggt gtagaatgaa cgagatgaga aaggagaaca gagaggggga 600 gataaacaag tctgattcta gtgtagactt tatcaggaga aaacaacccc aaaataacca 660 aaagaaagct aaacctagtc ccaagggggg ttcccaaggg ggtaagaagt gtcatttctg 720 tggcaatgaa cctcacgaaa gaaaggattg ccctgctagg ttagcgacat gtaacaaatg 780 ccacaagaaa ggtcattatc agagggtctg cgaaagcaaa acgaaagccc cagctcctaa 840 aaatgttcat gaagttgaaa gccctgggga agaggatttc ttgtttcttg gggaggttac 900 agggaaagca aatgatccct ggattgctca aataggggta aatgatcaca acaaagttta 960 aactagacac aggtgcctct gtctgtgttc taagtgactc agttccatgg ctaaagggga 1020 tgaagctaga caaacctcag caaacactga gggggccagg ggggaccttg aggttattgg 1080 aacttttcag gctaccctga aatatcgcca aagcaaaacc caggaacgca tgtatgttat 1140 tagaaaccag tcctgctctt tactgagtaa gaaagtttgt gtagacttgg ggctggtgaa 1200 gcttaatgat gtgggggaaa ttctccagtc accccaagac tttcgtaagg aatttcaagg 1260 tctagggaag atcacaacag aatatcgcat aacattacgt gatgaggcag tcccagtttg 1320 cttgtatact cccagaaagg taccccatcc cctgttgcca aaggtaaagg aagagataga 1380 gacaatgtta aaacaaaacg tcatctcacc cgtgaccgtg cccactgagt ggtgttcggg 1440 tattgtttgt gttcccaaac ccaatggcag agtgcgaatc tgcgtggatc tgactcagct 1500 taataaaggg gtcaagcggg aaatacaccc gatgccatct gtggatgaaa gtttatccaa 1560 actatcccag gggaaggtct ttagtaaact cgacgctaat agtgggtttt ggcaagttcc 1620 ccttgatgaa cagtcaaaat tattgaccac attcataacc ccctttggca gattttgttt 1680 caacaggctg ccatttggga tcagcagcgc acctgagttc ttccaacgcg ccatgtctgg 1740 tatcctggag ggactagatg gtgtagtgtg ccagatggac gacatcttaa tccatgggaa 1800 ggaccaagca gaacatgaca aacgtgtacg agcggtccta aaccgtatcc aggatgcagg 1860 gatgacacta aacagcaaat gcgagtttaa caaacggtca atcaagttcc tggcacacat 1920 cattgacggt agtggcattt acgtcgaccc cagtaagaca gatgccatca ccaggtaccc 1980 agtaccgaca accgtcacag agctccaaag gttcctaggt atggtcaacc atgttgctaa 2040 gttcgtgcct agactagcgg atctcaacgg tccactgcgc cagctgcttc ataaagatgc 2100 acagtggcta tggggtccag accagcaaca ggcattccaa aggattaagg aggtcctggc 2160 atcatcggag gtgttagcgc tctacagtcc gaagcgtgag accataatcg cagcagatgc 2220 atcaaacgca ggaattggtg cagtcctgat acaaatagcg gacgatggct cccgtcgtcc 2280 tgtgtactac gcgtcccgtt ctctgtcgga gacagagcag aggtatgcgg ttattgaaaa 2340 ggaagcctta gcagctactt gggcctgtga aaggtttgcg cagtatgtgt taggtcttaa 2400 gttcacgcta gagacagatc acaaacctct agtaactttg cttaatacaa ctgaattatg 2460 caagatgccg cctcgcatcc agagattccg acttagacta atgcgtttca gtccacatgt 2520 agtctatgtt ccaggtaaac agcagctcac agcggatgca ctgtcgagag cgccagtagg 2580 aaagccacta ccggaagacg tcatgttggt tgaagaagtt gagagctatg tgggtaagac 2640 attgcatgga cttcctgcaa cgccaaaccg tctcacagaa atacgcgaag cgcagaaagc 2700 agacgaagag tgctccctca ttcgcaggta ttgtatggaa ggatggcctg cttatatgcc 2760 acataggccc ctcatgcagc catattggga ggcacagagt cacctagcag tcgtggacga 2820 gcggatcgtc ataccccagt ccatgaggct tgaaatcctc aattgcgtcc acaccggaca 2880 ccttggtata accaagtgta gagcaagggc tcgcagctcc gtatggtggc cagggctttc 2940 taccagtatt caagacatgg tttctaagtg cggcacatgt gcaaaggtta aacaagacca 3000 gcgtgagcca ctcctgccaa gttcctttcc atcacaccct gggagagaat tggtatggat 3060 ctattcaatt accaaggtaa aatccatcta attgttgttg attactattc tcgttggata 3120 gagataaaga gactttacag tgaaacatct gaaaatgtca tcaatgttct taaggaacta 3180 tttgcaacac acggaattcc agactgctat ttcggacaat ggtcctcagt ttgtcttgga 3240 aatattcagc aagtttgcag atacgtacgc ctttatccat tatactagct cacctaagta 3300 tgctcctgct aatggagaag cagagagagc ggttcgtacg attaaggaac tgcttaagaa 3360 gaacaaggac attggtcttg ctctcttgtc gtatcgctct acacctttac agaatggttt 3420 atcgccaagt gagcttctca tggggcctgt actgccaagc acgctacagc cgagaaatat 3480 gtcttccgac ttaaaggctg tgagagcgaa ggaagaaaca tacagaaaca agcaagaggt 3540 ttccttcaac agacgacata gagccagaga gttatcgtct ctaaatcctg gtaacactgt 3600 gtgggtcaaa gaccaatcga aactaggcaa agtgctatca ccgacacagt accccagatc 3660 atatctggtg aaaacgggtg aagggattct ttgcaggaat cggtcagctc tggtacccac 3720 caccgaagag catacggcgg aaccaaccga acaagcagac gacaccgatg aagagtggcc 3780 gagtcctcag ccgcctttgc caacaatcag tgcagagtcg tctactccag cgaacactcg 3840 tgtatctcag acaacccgat ctggtcggat tgtcagacct ccaaagcgtt tggacttgta 3900 aggacagtat gaacatttga acactacgaa cattagctat acagtaggct ttattagtgg 3960 tttctagaac atgttacagt ttagacgtta agcttgcttc agctcacaaa atttgttatt 4020 aagtatggca gtccatactt gggggaaga 4049 // ID Gypsy-43-LTR_NV repbase; DNA; NEM; 152 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-43_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43-I_NV; KW Gypsy-43-LTR_NV; Gypsy-43_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-152 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-152 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-43_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 520-520 (2007). XX DR [2] (Consensus) XX SQ Sequence 152 BP; 45 A; 33 C; 25 G; 49 T; 0 other; tgtaacacaa ccagtgactg acatgtattg cgtgactttc gcgccatagt tattcattat 60 gttaatttat gcatgtagct ttatacttgt gtacaaactt gtacgattcg cacgagtatc 120 ataataaacc ctccagttca cgaaactcga ca 152 // ID Ginger2-1_NV repbase; DNA; NEM; 2751 BP. XX AC . XX DT 03-FEB-2010 (Rel. 15.01, Created) DT 03-FEB-2010 (Rel. 15.01, Last updated, Version 1) XX DE Ginger2 DNA transposon from Nematostella vectensis. XX KW Ginger2/TDD; DNA transposon; Transposable Element; Ginger; KW Ginger2; integrase; Ginger2-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2751 RA Bao W., Kapitonov V.V. and Jurka J.; RT "Ginger DNA transposons in eukaryotes and their evolutionary RT relationships with long terminal repeat retrotransposons."; RL Mobile DNA 1, 3-3 (2010). XX DR [1] (Consensus) XX CC TIR is 52-bp long. XX FH Key Location/Qualifiers FT CDS 519..2174 FT /product="Ginger2-1_NV_1p" FT /translation="MRIVDDTVLSNMADCVDSQEFLKQIDTIKEQAKTQKS FT GINVFITDEFYSKAQDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAK FT NEVVSSGGKPVLCRSQLHQHLSFAHQRVAHRGRQKTEKWIQDNFAEVTQKV FT INVFVQLCKYHAEQKPITSRVKEVTKPFQAPTFLSFIELDLMDFRNTPCKC FT SKRHQWVLNIIDHHSKYVTCWPLKGKNAVEVLQGLKNYCYSFGFPKKIVCD FT NGTEFSNAMLNSFCEENNIKICHGSPRTPTTQGLVERSNRTWKEDMRAILI FT SKQKSVGEWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREVNRIEQD FT GQEVQEEQLEDNPTVPLEQEEQLEDNPTVPLEQEEQLEDNPTVPLEQEEQL FT EDNPTVPLEQEEQLEDNPTVPLEQEEQLEDNPTVPLEEHIDNEGRKCKRQK FT ICESQKTYNEKMKKQTQKAKKFKFNVYDIVAIQIHKSDKVSKLHPNMLIGK FT ITEIDSTSNYVKVVTQFGIIKGLIAPTRLNPCTATNVAFDYDHEVSFTYAC FT KQCQS" XX SQ Sequence 2751 BP; 1004 A; 611 C; 444 G; 692 T; 0 other; tgttgtggtt tcaaatgtgg cacggtttga atttttttca aactggtttg aatttttcaa 60 actagctcat ttttggatac ctagcattct aaaagggatt tcatttttgg ggagtcatta 120 ataaaacagg ggcttggatt tttttttggg gggaggggta actaaaagaa ctagataaaa 180 gattatgcaa atatcccctt ttcttcccaa tcccactttc ttccatcctt tctatttgct 240 taccccacac caccctatcc ttacccccct ccttatccct atccctaccc cctccgtaat 300 cactatccat acccccctac aactttatat ttcttttatt tttttttttt ctaaataaac 360 cttaccttca caaggatttg aaccactgac ctttagattg aaactccaat gcattaccaa 420 ctgcgctatc gaggatttcg ttggtgaaat tgtttgcaca tcatttttat gtcggcaatg 480 tattataatt tatgcgcaaa tgacattaaa attcacgcat gcgcatcgta gatgatacgg 540 tacttagcaa tatggccgac tgtgtagaca gccaggaatt cttgaagcaa atagatacta 600 taaaagagca agcaaagact cagaaatctg gcatcaatgt tttcatcact gacgagttct 660 attctaaagc tcaagactat cttaaagaaa aagcaaaagg caacgaacgt agaataagca 720 atcaaatgac gaagaccgaa atcgaagcta taaaaagaaa gaaatggacc ctaaatgcca 780 aaaacgaagt agtttcaagt ggaggaaagc cagttctatg tcgaagccaa ctacatcaac 840 atctgtcatt tgcacaccaa agagtggctc acagaggacg acaaaaaact gaaaaatgga 900 tccaagataa ctttgcagaa gtcacacaga aagtgatcaa tgtgttcgta cagttgtgca 960 aatatcacgc cgaacaaaaa cccataacaa gtcgtgttaa agaggttact aaaccatttc 1020 aagcgccaac atttctctct tttatcgagt tagatctaat ggatttccgt aacacgccgt 1080 gcaaatgcag taagcgccat caatgggtgc taaacattat cgatcaccat tcaaagtacg 1140 taacttgttg gccattgaag ggaaagaatg cagttgaagt cttacaaggt cttaaaaact 1200 actgctactc atttggtttt ccaaagaaaa tagtttgtga caacggtact gagttttcga 1260 atgccatgct gaattccttc tgtgaagaaa acaacataaa aatttgccat ggatctccaa 1320 ggacaccaac tactcaaggc cttgtagaga gaagcaaccg cacatggaag gaggacatgc 1380 gagcaatact aatctcaaag caaaaaagtg ttggtgaatg gtgcaaagca acaatggaag 1440 cctcatatac tatgaacata acgtatcata gagctattaa atgttcaccg tacgaagctg 1500 tctttgggtt taaagcccac cgtgaggtca acagaattga acaagatgga caagaggttc 1560 aagaagaaca actagaagac aacccaacag taccacttga acaagaagaa caactagaag 1620 acaacccaac agtaccactt gaacaggaag aacaactaga agacaaccca acagtaccac 1680 ttgaacaaga agaacaacta gaagacaacc caacagtacc acttgaacaa gaagaacaac 1740 tagaagacaa cccaacagta ccacttgaac aggaagaaca actagaagac aacccaacag 1800 taccacttga agaacatatt gacaatgagg gaaggaaatg taagcgtcaa aaaatctgtg 1860 aatcacagaa aacatataat gaaaaaatga aaaaacaaac acagaaagca aagaaattca 1920 aatttaatgt atatgacatt gttgctattc aaatacataa gtctgacaaa gtcagtaaat 1980 tacatcctaa tatgctcatt ggcaaaatta cagagattga ttctacaagt aattatgtaa 2040 aagtggtaac acagtttggt atcattaaag ggcttattgc cccaaccaga ctaaatcctt 2100 gtactgcaac aaatgttgca tttgattatg atcacgaggt atcgttcaca tatgcatgta 2160 aacaatgtca atcataactg tcaataaact gccttctggt taaaacactc atcacttttt 2220 taaccaacta cctaacaata tactgtagtt agaatataac ctaaccatat atacccaacc 2280 ttgtcccaaa acctaacccc aaggtactat gaatataaag ccgtacccaa ccttgtccct 2340 aaacctaacc ccaaggtact atgaatataa agccgtaccc aaccttgtcc ctaaacctaa 2400 ccccaaggta ctatgaatat aaagccgtac ccaaccttgt ccctaaacct aaccctaagg 2460 tactatgaat ataaagccgt acccaacctt gtccctaaac ctaaccccaa ggtactatga 2520 atataaagcc gtacccaacc ttgtccctaa acctaacccc aaggtactat gaatataaag 2580 ccgtacccaa ccttgtccct aaacctaacc ccaaggtact atgaatataa agccgtaccc 2640 aaccttgtcc ctaaacctaa ccctaaggta ctatgaattg ttaaaactgg tatgaaattt 2700 ttcaaaccag ttttaacaat ttcgaaccaa gaagcatttc aaaccacaac a 2751 // ID DNA-TA-1_NV repbase; DNA; NEM; 268 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-268 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-268 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-268 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 268 BP; 69 A; 58 C; 59 G; 82 T; 0 other; ggcgacttgc actaagaaat cacgtgactt tttgggtggc aaactcgcgc gcgctcaggc 60 ttttagcggc aaaataacaa caacaaaaag caacttattc agcgcttacg aatcagccag 120 aaagtttctt tgtcagaaag ggcttatttt cattgaaaga ttttattttt tcgtcgctct 180 ctggcgtgac gggcgcagcc atttctgtgt ttattttggc ttgaatttgc cactcaaaaa 240 gtcacgtgat ttcttagtgc aagtcgcc 268 // ID Gypsy-37-LTR_NV repbase; DNA; NEM; 176 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-37_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37-I_NV; KW Gypsy-37-LTR_NV; Gypsy-37_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-176 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-176 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-37_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 506-506 (2007). XX DR [2] (Consensus) XX SQ Sequence 176 BP; 50 A; 31 C; 33 G; 62 T; 0 other; tgttaccctt ggaattaagc acttgcccac ccccccatag aaaaatattg tattacccat 60 aatgcagtgt gtgtagaaga agaagaaaac gtgttgaccg ccatgtttgt ttctgtgtgg 120 tttattttcg gtttattttt aatgttactc gagttttcac aaattataag gtaaca 176 // ID Gypsy-72-I_NV repbase; DNA; NEM; 1831 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-72_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72-I_NV; KW Gypsy-72-LTR_NV; Gypsy-72_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1831 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1831 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-72_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 571-571 (2007). XX DR [2] (Consensus) XX SQ Sequence 1831 BP; 523 A; 453 C; 455 G; 400 T; 0 other; cgtagtgaat tttggcacgt aaaacttgac tacgttcaat acgcccccag aaggtaccgt 60 tggaggcgct tgccattcga cattaggtca gcgccggagg tctttcaaag aaaaatgcac 120 gaactgatca aaagattgaa tgaagtgaaa gtcaaagcgc agatgatttt gttgtaatag 180 gcagaggcga cactatggag gaagcgacca aagaccatga cgaaaacctg ttgcgcttcc 240 ttgatctatg tgaagaaaga aggctcaaac ttaacaaaga gatgctaaac ctaagacagg 300 aagagatctc cttcatagga cacaacgccc ctggtaatgg cttacgcgct gatcctgcca 360 aggttgaggc aattactagg atgccggcac caagcgacaa ggcgggtata cagcgactcc 420 ttggcatcgt gcagtacctc ggcaagttct tacccaactt ttcggacatt accgagccgc 480 tttgagagct gacccaacaa gatcccgcgt gggtctgggg agaagcacat caattatcgt 540 tggaaaagtt aaaagacgcg gtgaccagaa ccccggttct gaagtacttt aacctagaga 600 aagaggtgac tctacaatgt gatgcctccc agtcaggcct tggggcagcc ttattacaga 660 acgggcagcc tgtggcatac gcatcacgag ctctgacgtc tgccgaaacc cggtatgcac 720 tgatcgagaa ggagctcctc gccatagtgt tcgcctgtga gaggtttgag acatacatct 780 atggttggga tgttgttcac gttgaaacag atcacaagtc actggaagcc atagttcctc 840 tacatgcagc gccgcaacga ctccaaagga tgcttttaag gttgcagaaa tactctctca 900 agttgcaata caagaagcat gttcctagca gacacgctca gcagggcata tcgcaacacc 960 ccaagccaag aaccacttca gccgcaaaag tttgtggcta gaccgtggtc aaaggttgga 1020 gctgaccttt gccaactgga tgggagggta ctactagtaa tattggatta ctacattgag 1080 gtagttgcgc gtgaagtcca ccacatcgaa gagtattata aaggaactga cagcggtctt 1140 tgctaagttt gggcttccag atgtccttgt ctctgacaac gggccgcaat tctcatccgc 1200 cgggtttgca gtgtttgcac gcgcctggtc cttcgcccac aagacctcat ccccgacata 1260 tccacagtca aatggaaagg ctgcgaatgc ggtaaagacg gtagaacgcc ttttcaagaa 1320 gtgtaaagac tcttgccagt cggagtattt agcacttttg gattggcgca atacacacac 1380 ccagggcatt ggcactagcc catcgcagcg cctcatggga cggcgtgcaa gacgctgctt 1440 acaataggca cccttctcca acttcgatac gattcggagg cggatgctca ttcgttgttg 1500 ggtgctaaac aacgacaaca gttctactat aataagaagg cgaaacccct taacgaggtt 1560 ttaactggcg agacggtgcg tataaagccg caaggaaaag agcgctggac acctaggatc 1620 tgcacttaga agttagacaa caggagttag ggacattctg aaaaccaatg agcctgcatt 1680 acctgtcgag tctgcagaac cagcggcacc tgaagacgaa gactatctca accccattgc 1740 accaaattcg aacaaacacc tcgctaccat gccaactgtt ccccgtagat cccagaggac 1800 cagacaagta ccagtttagc agaaggatta t 1831 // ID DNA-5-9_NV repbase; DNA; NEM; 165 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-9_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-9_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-165 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-165 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-165 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-9_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 165 BP; 40 A; 45 C; 46 G; 34 T; 0 other; cagtgccgta gcaggcctcg aaatattggg ggggggggca caatacagaa acattaagaa 60 aatattgggg ggcacagcca cgcccctact ggtcatttcc ttataatttt tgaaaatatt 120 gggggggcac gtgcccccag tgccccaccc cctgctacgg ccctg 165 // ID Gypsy-3-LTR_NV repbase; DNA; NEM; 123 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-3_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3-I_NV; KW Gypsy-3-LTR_NV; Gypsy-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-123 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-123 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-3_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 512-512 (2007). XX DR [2] (Consensus) XX SQ Sequence 123 BP; 32 A; 21 C; 24 G; 46 T; 0 other; tgtaatgttt gggattcctg tttgtatgac cgcaaggttt tctgggtaac agcaataaac 60 aacgagagtc cgccattact gtttattcgt tttgatctta aggtttttct caaatacatt 120 aca 123 // ID Sola2-1_NV repbase; DNA; NEM; 4332 BP. XX AC ABAV01019796.1; XX DT 11-FEB-2009 (Rel. 14.02, Created) DT 11-FEB-2009 (Rel. 14.02, Last updated, Version 1) XX DE Sola2 DNA transposons from Nematostella vectensis. XX KW Sola; DNA transposon; Transposable Element; Sola2; Sola2-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4332 RA Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.; RT "New superfamilies of eukaryotic DNA transposons and their RT internal divisions."; RL Molecular Biology and Evolution 26(5), 983-993 (2009). XX DR EMBL/GenBank/DDBJ; ABAV01019796.1; Positions 8640 12971. XX CC TIR is 710-bp long. XX FH Key Location/Qualifiers FT CDS join(1310..1642,1638..2273,2212..2433,2382..2648, FT 2599..2946,1248..964) FT /product="Sola2-1_NV_1p" FT /translation="MFCWFLSCNVVHTPFIESLRTVDKEMATKFKLKPGEK FT LCSNCYDRCCEQHDDSQTSSSDSDSDREAVSYGKRKVDQIQSKLEAKFARV FT FNIEIYLRRRMVSVEMLVKILTVPSDAPARRKLKTATRQEKIKLLTLVPES FT WSRKKIVDTFGVSDHMVWRSRQLRREKGILADPDPKKGGRALPSDVLERIV FT KFYESEEYSCICPGKKEFVSVKENNVKVYRQKQLLLVNLHELYVEYKKKYP FT ADKVGFSKFCDLRPKCCVPVTASGMHSVCVCEQHQNVKLIAAAIPGSHDYI FT DLLGKIVCSVSSRECMLHLCESCPGKVAILVAAVNVCCTYVNHALGRLQYL FT SDIFSTNDFDSDDTVTYKHWAHVDRTSMLCLTSTVTDSFKLHAVHLILSER FT TISFIQTTCSSFDSLRTHHFIAKAQSSYLSQLKKDLKEEEAIVMLDFAENY FT SFVIQDEVQGFHWNNAHATLHPFMIYYKLAGDLQCSSMSETSTTNWQGTFS FT VLPCLKHETTTVHAFISTIVSYIKAELPFIQQPLYLSDGAASQYKNFKNFS FT NLCHHEEDYGLKAVWHFFATSHGKSPCDGIGSTVKRLVARASLQAATDTNC FT FTNVYVSYEEIMGLYKTSADSHIVTNTTFRDGNRSGHLQRVKCHSASSKAA FT YPLLPDHQLKFNRTFCSKHACHILHSKKSQFYTFQKPCRSFQLMRSD*" XX SQ Sequence 4332 BP; 1284 A; 833 C; 925 G; 1290 T; 0 other; gggtcattcc atatgaactc aaccagaggt ccccaggtca ctgactcaga ttttgctcaa 60 atttattttg gtaatacctc tatatgtata agggacacat gcaaaatttt agggtccaac 120 tctaaagggt ctccgagata tggccttccc aaaattgagg gctacgccgc cattttgccc 180 tcgtgagggg caaacgtcag tttatacgaa tttcagagct caatatcttc aaaaccaact 240 acaggacagg gctgaaaatt actacaggct ttcagaatat gccatcagaa ttgctccatc 300 tcctctcttt ttctagtttt tggcctatca attatggttc tttgcatagg cggaaatcaa 360 aaatcaaact ttccggggtc ccccatgaga ccaaagtgtt gaaaaaagtt ataactgtgc 420 tagattcctt caattggggt gcatgtctat ctgtactatg agtatggact atctagaagg 480 cttaatatag gagttaggaa acccagaaaa ggcccagaaa ataacacttt tttaccaatt 540 ttctgatgga aggttcacca tgtgggcaaa tacccatggt aatgaaattt gttctacatg 600 actgcacata tctgggctct atttgttcaa aatttaaact tgttttctca tctccttcat 660 tgtttggtca tgttggcaaa tataggcgtt ttttaagaaa acgcactatt ccgatcattc 720 agagattaca gttgtcagag cagttcatta ttcaacactc tttttagttg gaaatcttcc 780 tgatatcatc tgatgttgca atgtttcctt tggaacacag gatttggcaa aattgggcat 840 tgcatcatct tccactggta ttgcattgtg ggtattgcat catctatcac cggtattgca 900 ttgtgggtat tgcatctctt cacaagtatt gcattgcttc atctctggtt aagacaaaaa 960 cagctaatca cttctcatta attgaaagct tctgcatggc ttctgaaagg tgtaaaattg 1020 ggatttcttt gaatgaagaa tgtgacaagc atgtttactg cagaaagtcc ggttgaattt 1080 cagttggtga tctggaagaa gtggataggc agcttttgaa cttgcggagt ggcatttaac 1140 tctctgaaga tgaccagatc tgtttccatc acgaaaagtt gtatttgtca cgatatgaga 1200 gtctgcagag gttttgtaca gacccattat ctcttcataa gaaacatatt acaagtaagt 1260 aagattgcct agcttcattt ttctgccaag aacagccatt tatttggtca tgttttgttg 1320 gtttctctca tgcaatgtag ttcacactcc ttttatagaa tccctgcgaa ctgttgacaa 1380 agaaatggct acaaagttca agttgaaacc aggagagaaa ctttgctcaa attgttatga 1440 ccgatgttgt gaacagcacg atgacagtca aaccagttca agtgacagtg acagtgacag 1500 ggaggcagtg tcgtatggga aacgaaaggt tgatcagata cagagcaagc ttgaggccaa 1560 atttgctaga gtgtttaaca ttgaaattta tctgaggagg aggatggtca gtgttgagat 1620 gcttgtaaag atcttgaccg tctgatgctc ctgctaggag aaaactcaaa acagcaacta 1680 ggcaggagaa aataaaacta ctgacccttg tgccagagag ttggtcacgg aaaaagattg 1740 tcgatacctt tggtgtatct gatcatatgg tatggagatc acggcaactt agacgagaaa 1800 agggtattct tgctgatcct gacccgaaga agggtggaag agcactccct tctgatgttt 1860 tagaacgtat tgtcaaattc tatgagtcag aggaatattc atgcatatgc cctggaaaaa 1920 aggaatttgt ttctgttaaa gagaataacg tgaaggtcta taggcagaaa cagctattgc 1980 ttgtaaatct gcatgaactg tatgtggagt acaagaaaaa gtaccctgca gataaagtag 2040 gattttcgaa gttttgtgat ttgcgtccaa aatgctgtgt tcctgttact gcctcgggaa 2100 tgcactctgt ttgtgtctgt gagcaacacc aaaatgtaaa acttattgca gcggctattc 2160 caggcagtca tgactacata gacttgcttg ggaaaatagt atgttccgtg agcagccgtg 2220 aatgtatgtt gcacctatgt gaatcatgcc ctgggaaggt tgcaatactt gtctgacata 2280 ttttcaacaa atgactttga ctctgatgat acagtaacat acaaacattg ggcacatgtg 2340 gacagaacat ccatgttatg tcttacctcc actgtaactg attcattcaa actacatgca 2400 gttcatttga ttctctcaga acgcaccatt tcatagctaa ggcacaatcg agttatctaa 2460 gtcagctaaa gaaagatttg aaagaagagg aggccatagt aatgttagat tttgctgaga 2520 actacagctt cgtaatacag gacgaagtac aagggtttca ttggaacaat gcccatgcaa 2580 cccttcatcc cttcatgatc tactacaaac tggcagggga ccttcagtgt tcttccatgt 2640 ctgaaacatg aaaccacaac tgtgcatgcc ttcatctcga ccatagtgtc ttacattaaa 2700 gctgaactgc catttatcca acaaccccta tacttgagtg atggtgcagc gagccaatac 2760 aaaaacttta agaacttttc aaacctctgc caccatgaag aagattatgg actcaaggca 2820 gtgtggcatt tttttgccac ttcacatggc aaaagtccat gtgatggaat tggtagcacc 2880 gttaaacgtt tggtggcaag agccagtctt caggcagcaa cagatactaa ctgcttcaca 2940 aatgtatgac tggtcaagta ggaatatacc aggagtgaag tttttttttg tatcagctgc 3000 tgatgtggta gagaatgaaa gaagcttcga cttgccagca tgatatgaca aagcagtgaa 3060 actggcacaa ggtcgcacca ctgctttatt tcgatttccc gaacagaact gcaaatgaaa 3120 cggatatcgg ccgatgacca tttcactgtt acctgctggt gtcagagctg gatactgccg 3180 agttgcagcc agggaaatat gttgcatcca tatatgataa ggagtggtac attggttgta 3240 tagtggagcg ttcagaggac aatgatgatg tattcgtaaa ctttatgcag cactctaaaa 3300 caggactttt gtcttggcct gcttctgttc gcaagaatgc ttgctgggta ccattccaga 3360 acatagtatg cttggtctct gcacctgagc tccaaggaca gagtgcacgg ttttataggc 3420 ttgctgctga agatgctgcc attattcaga agaagctgcc attatttgca tgaactcttt 3480 gatttgaata agccctctgt actagtacat gtaattcact gtttgacatt ctctatgcat 3540 attcaattga tgatagactg tatcatctac atgtacatat atggcttctc taataggcca 3600 atatggtgcg ttttcttaaa aaacgcctat atttgccaac atgactaaac aatgaaggag 3660 atgagaacac aagttgaaat tttgaacaaa tagagcccag atatgtgcag tcatgtagaa 3720 caaatttcat taccatgggt attttcccac atggtgaacc tgccatcaga aatttggtaa 3780 aaaaatgttg tttttcaggc gaagcctttt ctgggtttcc taactcctat attatgcctt 3840 ctagatagtc catactcata gtacagatag acatgcaccc caattgaagg aatctagcac 3900 agttataact tttttcaaca ctttggtctc atgggggacc cctgaaagtt ggatttttga 3960 tttccgccta tgcaaagaac cataattgat aggccaaaaa ctagaaaaag agaggagatg 4020 gagcaattct gatggcatat tctgaaagcc tggaccagaa ttagttagag tagtgatttt 4080 cagccctgtc ctgtttgaag atattgagct ctaaaaattc gtataaactg acgtttgccc 4140 ctcacgaggg caaaatggcg gcgtagccct caattttggg aaggccatat ctcagagacc 4200 ctttagagtt ggaccctaaa attttgcatg tgttccttat acatatagag gtattaccaa 4260 aatttgagca aaatcggagt cggtgacatt taaagatttt ttcactttgg ttgagttaat 4320 atggaatgac cc 4332 // ID Gypsy-26-LTR_NV repbase; DNA; NEM; 138 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-26_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26-I_NV; KW Gypsy-26-LTR_NV; Gypsy-26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-138 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-138 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-26_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 484-484 (2007). XX DR [2] (Consensus) XX SQ Sequence 138 BP; 37 A; 26 C; 42 G; 33 T; 0 other; tgtagtattg ggctacctgt agtagcagag ggactagggg gactggggcg agtaagatgg 60 cggcctccta gagcgatcgg actacgattg tatggtagca ccttagagta tcttagacac 120 aataaacgtc ttactaca 138 // ID Gypsy-59-LTR_NV repbase; DNA; NEM; 90 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-59_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59-I_NV; KW Gypsy-59-LTR_NV; Gypsy-59_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-90 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-90 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-59_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 554-554 (2007). XX DR [2] (Consensus) XX SQ Sequence 90 BP; 26 A; 18 C; 19 G; 27 T; 0 other; tgtcacataa tgtatgttat agtttcccgc gttatgataa tttatgcgta ataaagatgg 60 ccgccatcgt gcacggtgca gaccataaca 90 // ID DIRS-14_NV repbase; DNA; NEM; 1522 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-14_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-14_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1522 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1522 RA Kapitonov V.V. and Jurka J.; RT "DIRS-14_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 408-408 (2007). XX DR [2] (Consensus) XX SQ Sequence 1522 BP; 518 A; 308 C; 311 G; 385 T; 0 other; aaaaaaactg tggagttatc acacctgcta gagcgactca aatagaaagt atatgtgaca 60 ctgtgaaaaa agggagaatt acaaatcacg taaaaatata aaaaaacatt tgccattttt 120 taatgtaata atcaagataa caaaaaagat cttcagttat agtagcaaag tttatggtaa 180 ttttgaggat atttgttaaa aatggtttgc atgcatggtt gtgaaaataa caacacatct 240 aataacacaa actttcgagg agtgcacaat ataaatcatc ggtatggctc aaacaagcaa 300 tcagcaactg aagcaatatt gcaaatagct ccacgtacgc actgcatatc tatgttttgt 360 acaagattgc gggacggaat cagacgaacg gaagaaaaga attgattcac cgtctagcag 420 acataaaagc atcggtaatt gttataattg acccttttgt gggtgagatt atcgagtatt 480 tcaaagtgaa atgtgatacc tttcgtgtgg gatgcataaa aaaatgcttt tatacgtggc 540 aagagaactc cttaccactg tcaaaggggc aattatcagt tttgaggaca agccccttaa 600 tatgccacgg ccgaatatca ctttctctaa cttttaatcg acttgtcaca ttgtagctcg 660 attgacgatt tattcctgcc ggccatatca agtctaccgc agaaaacact gacaaagaaa 720 ctacactggc aattctcact gtccaacgat gtcagacaca cagtatatgc agatcatgcc 780 aaataaaaaa gtgtttacta ttaaggacgt attaaagacc tctagaccag ggaagcatat 840 ctagccaatt gagccgcaag actatgataa cgacctacga atttaccctg ttgtgcactt 900 cactcattac atggaacgaa ctcgctaagt aaccaacaat taggaccact actaatcatc 960 tacagcaaac cgcacaagcc ggtcacgaat ccgacaatcg ctagatgggt gaaaagcatg 1020 ctcaccgaaa gcgagatcaa catagaaatg ttctcggcgc acagcagtca aacagccact 1080 gcctcttgca gcgctgcaat ggaccttcgc ctctagtaca ttttaagcgc tattcgatgt 1140 taagcgaaga tgagagccgt accgcctccc tgaggacaac aacgaacttg atctaacact 1200 cgatatccgt ccggacagag ctcggatctg atcgaatcat cattgccact cagccaggtc 1260 tcggttatag ctaccaaatc agctttgata tcagagatgt agtcatgaat caccgcagat 1320 ttgttcctca ctgaacgagc attgaaaaga aaaggtgagg caggcgagac agtgttcgaa 1380 gtaccctgat attttttgta tgttgattag gtttaacgca gtttaacacg gtggagagaa 1440 gtttggacaa gctggattat tggaattagt gtaaaagatg taatgcgggg ctagatgtca 1500 taataccaga gaaaaggaag ca 1522 // ID Harbinger-N5_NV repbase; DNA; NEM; 203 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP8; Harbinger-N5A_NV; Harbinger-N5_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-203 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 163-163 (2007). XX DR [1] (Consensus) XX CC Harbinger-N5_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N5_NV CC transposon forms a palindrome and is flanked by TWA target site CC duplications. The MSAT3_NV unit is at positions 48-79. XX SQ Sequence 203 BP; 58 A; 52 C; 52 G; 41 T; 0 other; aggttggttc tcactaggac gcaagcgcaa gcgtaagcgc aaacggaagc gcaacacaag 60 tgagaatcgg tcaaacacaa gcgcaagcgc aagaaaatca agcagttgcg ttctcttgcg 120 cttccgcttg cgcttatgtt ctagtgagaa tcggaaaact acgtgcgttc cgcttgcgct 180 tacgtccaag tgagaaccaa cct 203 // ID CR1-10_NV repbase; DNA; NEM; 3235 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-10_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3235 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3235 RA Kapitonov V.V. and Jurka J.; RT "CR1-10_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 387-387 (2007). XX DR [2] (Consensus) XX SQ Sequence 3235 BP; 933 A; 701 C; 684 G; 917 T; 0 other; atgtacgaaa tgtggtcagt gttgctccta acactatcac aatttgctgt atggccacaa 60 ttgctcttct cgtcattatg ctggcgaaat tttccacaac gaccatcaga gctcttgagt 120 cgccatccgg gtcaaggtac taacccacga aagtgctact cctcttcaac gcttaaggcc 180 ttcaggaaga gctctacatc ttcacgcctt tctgatgatt tatggatgga attgaaagac 240 cttggaatat tgaaaccata tagatctaga cgcaagcgtc gaaaacaaag aactcggcca 300 tgtgtaaatg agtcagatgc aaatgaagct gggacggttt ctgtaaaccc cccgcgtatc 360 aaagcttcgc ttcctgtcac tttactagca aatgaagctg ggacggtttc tgtaaacccc 420 ccgcgtatca aagcttcgct tcctgtcact ttactagcaa atgttcgatc tctgcacaag 480 aaagttgacg agctccactc gatcgccgag tctacgaagc ctggaattat ttgtctaact 540 gaaacatggc ttgattcctc tgtccctgaa tcggctattc atcttggtaa ttatgtatgc 600 ttcagaagag atagacctat tggacaatgt ggaggtatat gtgcatatat cgattcacac 660 cttccttgta aacgattgct ggaatttgaa aaccccgaca tcgaagctct atgggtttct 720 attagaccat ttcgtctacc tagatcagtg tcaaatatcc tggttggaat agtctatcac 780 ccaccacatt gtgggagtga agagaattct agactgatcg aacatatctc aatcaacaca 840 gaatcgttcc ttacaaaaca cccggatggc atgatactcg tgactggaga tttcaatccg 900 cctagtactg gtataaaagc tagtgtcatc aagcaaaagt caggtctctc ccaaattgtg 960 accgtgctaa caagggattc gggtatgtta gactgggtcc taaccaacaa accgaagttg 1020 tttcagtcac caatccagct accgaaaatc ggaaaaagcg atcactatgc tgttcttatt 1080 aaacctattg gggcgttggg aacaataaag tcttctacgg aaactattag tagacgagat 1140 atgagaccta gttgcatgga cgcatttggg cgttggatta ctggatacaa ttggagctat 1200 gtattggacg cacctactgc agatgcgaaa tgccgtctac tatatagtgt cttgcaaaat 1260 gccgttgata tatattttcc agctaaatcg atcaaagtgt gcctaacaga caagccttgg 1320 gtctcgagta ggctcaaagg cctggttacc aaacgacaaa gggctctacg gatacatgga 1380 aaagactctc ccatttttaa acgaatccgt aacagtgtta aagaactagt aaagaactgt 1440 aagcataatt attatagcgc gaaagtcgct tcgttaaagg acactaacat ctcacggtgg 1500 tggtgtgagg tgaaagctat tgggggattg tctagcacat ctgaatggtg gcaccaacta 1560 ttgagtgaag acactcccac catagagtca ctctgtgatc agtttaataa tctcctatac 1620 agcttaacgt cacactttgc cccactcgat atcagtagtc tggcggatga aaacctctat 1680 gtcccccctg ggttccttgt cactgatgag aaggcgtata aagctctgcg ctcaatcaaa 1740 tcaaacaagt cccctggccc agatcaagtg ccgtcgcgag tttggaaaga gtttgcattt 1800 gaactagctc cgattgtgag tgatttgtac aacagctctc tcagagaagg gcgtgttcca 1860 gagatcttga agacatccct ggtcattcct acacccaagg tcaccccacc caagacagtt 1920 gaggatgatc tcagaccaat tactcttacg tcaccgttgg ccaaaattct agagggcttc 1980 actctcgaac acctgatgaa tcaagttgca gagaacctgg acattaagca gttttcgatg 2040 ccaggcagat caacaacaca tgccttagtt tatatgctcc atattatact agctgcctta 2100 gacaaaggta attgctttat aagagtgttc tttgcagact tttctaaagg ttttgatttg 2160 gttgatcata atgcattagt gaacgaaatg aaactgctta acgttcataa tgtaattata 2220 aggtggatct gctgttttct ctcaaatagg cctcaacgtg taagagtagg caatgcattg 2280 tcatctgtag ttgtttccaa tgggggtatt ccccagggca cgaaatcggc tccgcttttg 2340 tttgcaatct tagtcaaccg tatgcttgca aggtggccta atagagttaa atatgttgac 2400 gataccaccg tatttgaaat tgttccaaga tgctctccca gttacataca atttattgtt 2460 aatgatatca aggaatatgc gtcatcaagg ggaatgcgtc tgaaccccaa gaaatgcaaa 2520 gagcttcaaa ttaatttctt aaagtaccaa ccttctgtcc cccaaagatt aatcctaggg 2580 agcgcagttg ttgagaaagt tgaacattac aagctattag gtgtacatat atcagcagat 2640 ctgtcatgga atgttcacgt tgaccacatt gttaagaagg ctagcaagcg cctctatgcc 2700 ctcagggtac tcaggaaggc aggtgtccag cagtcagata tggttcttat ctattgctcg 2760 ttaattcggt cagtccttga gtacgctgct cctgtctggg cctcccttcc tgagtacctt 2820 gcagagctta tcgaaacagt acaacgaaaa gctattcgaa taatctaccc ttgccttagc 2880 tatgaatcag ggctcaaagt agcaaaaatg gactcactta cagtccgcag agcagaactg 2940 tgccgtcgat tcatggctaa agcaagatgc actgagccta taaaatatat aatacaatct 3000 gggactgagg tcgcccatgg ttattcgcta agggggggtt gcagccgttt ggataaatca 3060 gttggtgtaa ctgaaaggta taataacttt atcacaattc gtttccagta gttattccag 3120 tatttattta tacattgtta agtgtagtgt gcatcggccg acatactgta atttagctta 3180 tgctacaaaa gtatgaataa acgattatta ttattattat tattattata ttatt 3235 // ID Gypsy-56-LTR_NV repbase; DNA; NEM; 109 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-56_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56-I_NV; KW Gypsy-56-LTR_NV; Gypsy-56_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-109 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-109 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-56_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 548-548 (2007). XX DR [2] (Consensus) XX SQ Sequence 109 BP; 26 A; 19 C; 22 G; 42 T; 0 other; tgtaatgtat taatacccat gatgctttgc gaataaagtt gttgtagttt gctgactcat 60 cgagtggtcg tctttcttca tgtggagttc gttttcccaa aatactaca 109 // ID CR1-6_NV repbase; DNA; NEM; 3723 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone CR1-6_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3723 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3723 RA Kapitonov V.V. and Jurka J.; RT "CR1-6_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 400-400 (2007). XX DR [2] (Consensus) XX SQ Sequence 3723 BP; 933 A; 1017 C; 736 G; 1037 T; 0 other; tcacgtattt tttgggctcc gttttttctg ctcagaaacc tactttagcc gcagctacta 60 atatcaaatt acttcagaca gcttactaaa cttctggtct gtcttctgga ctggtttttg 120 gtctgttccc gtcgtgattt gccttcgagt ttggcggaaa cctcgactcg atcgtagcca 180 ttgtgacggc cgccatcttg tttgtgtgga acaatgaaat tcgccttgtt agtattatcc 240 atctcgttgc tattaagagg cttttaccat caacatttta cttctactac tctgaagttg 300 aagcctacgt caattcaact accatcttct gcttcaattg cgtgcttttt tacatccaag 360 caacatactg gttcagtatt tcgtccattc ccggcaccgc tgacctcatc gtcctgctgg 420 ctctcgatcc tgctagtgat tagttccaac ggatccattc tcaatcctgg acctgtgaaa 480 ttcccctgtg aatgttgcag taagcccact aagtcaaacc aactcgctat ctgctgcgat 540 gattgtgata cttggtatca tatcaagtgt cttcggatgc caatgcatat ttatcaggga 600 cttaataact ctcatacgac ctggatctgc tgtaactgtg gcttgcccaa cttttcctcg 660 tcgctgttca gtcgttctct ggacatctcc agttccaact ctttcagttt gcttgaaagc 720 acctctacag ccagccctgg actcgatccc actccatctc cgatcgcttc ttcatctcct 780 gtgcttacac cgtcaccaaa gcacaagctg cgttgtatgt ccatcaattg taacagcata 840 ttgagtgctg agagatctgc gctctttgct agccttgtgt ctcatcataa cccggacatt 900 atttttggat gtgaatcgaa actgaataga gatgtcccat cagcttctgc gtttccccaa 960 ggctttacta tctatcggaa agaacgccag gactgcggtg gtggaggtac ttttatcgct 1020 gtaagatctc caattgtctc acacccactg gataatatat caactgatcc tgaggacgag 1080 tcgctttggg tctccattca gatatctcgg cggaaatttg tgcatttatg ctccttttac 1140 aaacctcctc tcgcgcccgc ttcccgcatc gatcttcttt cccaggctct actgagggtg 1200 tttgacaagc agaaaaagtc ccatcccaac gtcgtgattg caggcgactt taactgtggg 1260 gatataaact ggaaggtcag ccctcctgtt attaccaacc cggccactgc ctcattgatg 1320 aataagttac ttgactttat tgatgaccac gccctcacac agtatgtttc cgatccaact 1380 cgccctgcct cactgaagac actggacttt gtttgctcgt cagttccttc tcttgtctca 1440 gacgtctctg ttcatcctgg catgagcgac cacgatctag tacatttcta tatcaacact 1500 aacccacggc gtgcaaccag aaccccccat aaggtgtact tgtttgaccg gatgaacttg 1560 gaaggtctcc aacacgacat ggatttgctt aatcaatcct tcatggtctc accgctctct 1620 cgatctgttg aggaaaactg gtcaatcttt aaaacgggta ttaaatcagc aatcgacgca 1680 aatgtccctc ataaaatgac caaacgcaaa ccagacgtcc cttggttgaa cagggcactt 1740 aagcggcaga tacgcaagcg cgaacgcctc cttcgcaggg caaagcattc tggggacaag 1800 tcaccgtctt cgcctgcctg gttggcttac aggaaatatc gtaacaaggt taccaaggca 1860 ctaaaagaag ctcataatca ccacctgaac gaagttgtgg gcggcagcct agtttcaaat 1920 ccaaagaaat tttggaacta cgttaagagc cgtcgatcag aagtatcaga catcccttca 1980 ctaaggtcta acgatggtgt ctccatatcc ccgcgcgaca aagctcaggt tctcaacaag 2040 cagttccaaa gtgtgttcac tgtggacgac ggagttctcc ctggacttgg cccaagcccg 2100 tttccgcata ttagtgatat cattttcacc cctactggca ttaaaaaaca actagacaat 2160 atgcagacat gcaaggcctc aggccctgat gaacttccag cacgcatcct acacgacttg 2220 tcaaactacc tagccaacat gttatgcatc atcttccaac agagttacga taaggggacg 2280 ctccctctag actggtctac cgccaaagta gtcccagtcc acaagaagga taaccgtgac 2340 aaccccggca attaccgccc tatctctctt acgtgcctct cctgtaaagt catggaacac 2400 attgtgctaa gccatttaaa caaacatcta tctgctttta atatcctgtc agacctgcaa 2460 catggcttcc gcagcggttt ctcctgtgag actcaattga ttcttgctac acatgactgg 2520 gccagcacac ttaattctca tggccaggta gatgccatta tgctcgactt tagcaaggcc 2580 ttcgacaagg tgtcccacgc aaagctatcc cataaactac atcactgtgg catacgtgga 2640 aagactcttg gttggattga agcctttcta aacaaccgaa atcagttcgt agtagttgac 2700 gggtcccatt ccagtcaggt tcctgtgaca tcaggtgtcc cccaggggac cgtgcttggc 2760 ccaaccctct ttcttgtgtt cattaacgac attgttgacc aatgcagctc ggtaactcgc 2820 ctatttgcag atgacacagt ggtctacagg accattcgat ctccagctga ccatgtgtcc 2880 ctccaacacg atctctgcaa ccttgaagcc tgggctcgga cttggcagat ggagtttaat 2940 gcctctaaat gccaattact gccgatcacc ttgaagagaa atagcagctt gttcaactac 3000 tcgctaggct cccagctcct gaattctaca gacgagcatg actatctagg gatccgcgtt 3060 gcacacgatc tccgctggag taggcattgt tgtaaagtct ctttgaaagc caacaagact 3120 cttggattat tacgacgtac ccttaaaccc tgttctcaga gtgtaaagga acgtgcgtac 3180 ttttcaatga taagaccggt catggaatat gcttctccag tatggaaccc cttcacggat 3240 agagacatca acaaattaga gcaagtgcag aaaaatgcgg cgcgtttcgt tactggtacc 3300 tacgacccca gggcaagctc atctgacctt gttaaatccc tgaattggga ctcgcttgaa 3360 gtgcgacgtc agctcgccca actatgcctc ttctataaaa tccgcaacaa tttagtgaac 3420 attgctctac ctcaacaatt tcagccaaac cttcgaccgt ccagaacaaa ctcctctaaa 3480 tataaccaga ttcagtccaa tgtactttcc cactcatact ctttttttcc tagaactatc 3540 aggacttgga acttgcttcc ctccgaggtt gtcgagtcct cgtcgattga ctcctttaaa 3600 tcaagtgcac tgccagtctt aagatcctta cggatccctg gccaccttcg ccgcctataa 3660 taccttggcg ccccctagaa ataagcgcaa gctttaatag ggtctaacat ttaagcattt 3720 aag 3723 // ID Dong-1_NVe repbase; DNA; NEM; 3515 BP. XX AC . XX DT 28-OCT-2010 (Rel. 15.11, Created) DT 28-OCT-2010 (Rel. 15.11, Last updated, Version 2) XX DE A Dong non-LTR retrotransposon family from Nematostella DE vectensis. XX KW R4; Non-LTR Retrotransposon; Transposable Element; Dong-1_NVe. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3515 RA Kojima K.K. and Jurka J.; RT "Dong family non-LTR retrotransposons from the starlet sea RT anemone."; RL Repbase Reports 10(11), 1870-1870 (2010). XX DR [1] (Consensus) XX CC This family is specifically inserted into (TAA)n microsatellites; CC thus it is a Dong family. XX FH Key Location/Qualifiers FT CDS 47..3433 FT /product="Dong-1_NVe_1p" FT /note="reverse transcriptase." FT /translation="MKMSSNSNRDNDVNENGGVLSSGREGVGGQAPLGRQQ FT TTGRRKWNNALYRVVMECYFESKPGTRGYRRRMLNSWQNRGMFRXSEQNLA FT DHARAIRNNNWLSDIELEEIKRQVNNVEGMESNNVVVDEVEVVDEGDGQQD FT QGVNDEQRFESSGDEGTNEFQALNVEELXARQREILDDIKRAFEEGDVEEL FT RSLKHVERSKLREVSQEVNKVLEHIKTVDITGTNRLVRAAAIVVIQRLGLK FT KRSNQPRKEPFWKRRIRSKIDSLRKEISKLESSKTMQKKGGRGLTQIMKKH FT QVKKKGLNVVIEELKQRVLASAAKLKRYENRINQFRQNRLFQCDQKKLYQE FT LDGINMENNIIPDPQESCEFWKSIWENQSEHNREAEWLDDVREELSQHVPQ FT EDVVIKEADVKKQLKKVANWKGPGLDGVQGYWLKNFRALHHPIAEQLNLIL FT ESGFVPQWMNQGRTVLCVKDLTLGNTAENFRPITCLPLMWKLLSGTLADKI FT YDHLENAEMLPVEQKGCRRASRGTKDQLLIDKMVLRNCKRRKTNLAMAWID FT YRKAYDMVPHSWILETLNMTGVAPNIQLLLRNSMLNWKTTLTSSGQTLGEV FT KIQRGIFQGDSLSPLLFVICLIPLSIILRSASGRYQLGKDAGSLNHLLFMD FT DLKLYGKNEREVDSLINSVRVFSSDIGMEFGLKKCGILILKRGKVVNSDGI FT ELPDGQKMKTIENEGYKYLGILEYDDLLHGKIKEDLSREYFRRLKKVLKAK FT LNGKNTIMAINTWAVSVLRYGAGVVKWTKTELENIDRKTRKRMTIYGMLHP FT RANVGRLYLPRRCGGRGLIGVEDCIHLEEKGLADYVHKSEEPLLLAVRNEG FT ILRVEEEQTARVLKEKLKEKRQEDWKTKPLHGQFLRQTEEIRDESSWDWMT FT KGNLKKETEGLITAAQDQALRTNALKAKIEKQQISPLCRMCGLKDETVNHL FT LCECSKMAQSQYKHRHDNVARIVHWAIAKEHGFEVKEKWYEHELLPVIEKP FT DLKILWDVTIQTDREIQARRPDIVIVNRKEGECIVIDIAVPGDANVGEKEK FT EKVLKYQDIRREIARLWDIKTCVVPIVVGALGTVSKNLTKHLSSIGLKTRI FT ELLQKGALLGSARLLRQVLEV" XX SQ Sequence 3515 BP; 1221 A; 604 C; 945 G; 742 T; 3 other; ccaggttggt gtctggcgcg ggataaccca ccacctcaca aaagtgatga aaatgagttc 60 taatagtaat agagataacg acgtgaatga gaacggaggt gttctctcgt ccggcagaga 120 aggtgtgggc ggacaggcac cactcggtcg tcaacaaaca actggccgta ggaagtggaa 180 caatgcgttg tatagagttg tgatggaatg ctattttgag agcaaaccag ggactcgggg 240 ctacaggagg aggatgctga acagctggca gaatagaggg atgttcagas tgtctgagca 300 aaacctggca gatcatgcgm gagcaatcag gaacaacaac tggctctctg acatcgagct 360 ggaggaaatt aagcgacagg tgaacaatgt ggagggtatg gaaagcaata atgttgttgt 420 agatgaggtt gaggttgtag atgaagggga tgggcagcaa gatcaagggg tgaatgatga 480 gcagaggttt gagagtagtg gcgatgaagg taccaacgaa ttccaggctt tgaatgtgga 540 agaattgtmg gcgaggcaga gagagatctt ggatgatatc aaacgggctt ttgaggaggg 600 agacgtggaa gaattgaggt ccctaaagca tgttgaacga agtaaactgc gtgaagtgtc 660 acaggaggta aataaagtat tagagcacat caaaacggta gatataactg gaaccaaccg 720 gctagtgcgt gctgcagcta ttgttgtaat acagaggcta ggcctgaaga aaagatcaaa 780 ccagccaaga aaagaacctt tttggaaaag gagaataagg agcaaaatcg attcgctgag 840 aaaggaaatt agtaagttgg aaagtagcaa aactatgcag aagaagggag ggagaggttt 900 gacccagatt atgaaaaagc accaggtaaa gaagaaaggg ctgaatgttg taattgagga 960 gttaaagcag cgggtgttag ctagtgctgc aaaactgaaa agatatgaaa accggataaa 1020 tcagtttaga caaaatcgtc tgttccaatg cgaccagaaa aaactctacc aagaactcga 1080 cgggataaac atggagaata acatcatacc agacccacag gagagctgcg agttttggaa 1140 gagtatatgg gagaatcaat cagagcacaa tcgagaagcc gaatggcttg atgatgtaag 1200 agaggagctt agccaacatg tcccccagga agatgtggtg attaaggagg cagatgtgaa 1260 aaagcaacta aagaaggttg caaactggaa ggggcctggg ctggatggag tgcaaggtta 1320 ctggctgaag aactttagag ccctccatca tccaattgct gaacaactta acctaattct 1380 tgaatcaggg tttgtgccac aatggatgaa ccaaggaaga actgtcttat gtgttaaaga 1440 cctgacacta gggaataccg cagaaaactt ccggcccatt acatgcctac cgctgatgtg 1500 gaaactactc agcggaacac tcgcagacaa aatatacgat cacttagaaa atgcagaaat 1560 gctccctgta gaacagaagg gatgccgcag agcttcaaga ggcaccaaag atcagctcct 1620 aattgataaa atggtactaa gaaattgcaa acgaagaaaa accaatttgg caatggcttg 1680 gattgattat cggaaggctt acgacatggt tccacactcc tggattttgg aaacgttaaa 1740 catgactggc gtagctccaa acatccaatt gttgttgcgc aacagcatgc taaactggaa 1800 aacgacacta acatcaagtg gacaaactct gggagaagtg aaaatacaac gaggcatttt 1860 tcaaggcgat agcctttccc ctttgctatt tgtaatatgc ttaataccac tgtcgattat 1920 actgcgaagt gcaagtggga ggtaccaatt aggcaaggat gcgggatccc taaaccatct 1980 gctgttcatg gacgacctaa agttgtatgg gaagaatgaa cgtgaagttg attcattaat 2040 aaactcagtg cgagtattca gtagtgacat tggcatggaa tttggcctta agaagtgtgg 2100 gatcctcata cttaagagag gaaaagttgt gaactcggat ggaattgaac tcccagatgg 2160 acagaagatg aagacgatag agaatgaggg atacaagtac ttaggaatcc ttgagtacga 2220 tgacctacta cacggaaaaa taaaggaaga cctaagccgg gaatacttcc gcagacttaa 2280 gaaagtgcta aaggcaaagc ttaacggaaa gaacaccata atggccataa acacttgggc 2340 ggtatcagtt ttaagatatg gagctggtgt agttaagtgg accaagactg agttggagaa 2400 catagatagg aagacaagga aacggatgac gatctatgga atgctacacc ctcgagctaa 2460 tgttggccgt ttatatctac caagacgatg tggaggccgc gggctgatag gggttgaaga 2520 ttgtatacat ctagaagaaa agggattggc agactatgtt cacaaaagcg aggaaccgtt 2580 acttctagcg gtgaggaatg aaggaatact tcgtgtagag gaagaacaga ctgctagggt 2640 cttaaaagaa aagctcaaag aaaaaagaca agaggattgg aagactaagc cattacatgg 2700 tcagtttctt agacagacgg aagaaataag ggatgagtca tcgtgggact ggatgacaaa 2760 aggaaacttg aagaaagaga cagaaggact gatcacagca gctcaagacc aggcgctgag 2820 aacgaatgca ttaaaggcga aaatagaaaa acaacagata tctcccttat gcagaatgtg 2880 tggcttgaaa gatgaaacgg tgaatcactt actgtgtgaa tgtagcaaga tggcacagag 2940 ccagtataaa caccgacacg acaacgtggc cagaattgtg cactgggcaa ttgcgaaaga 3000 acatggattt gaggttaaag aaaaatggta tgaacacgag ctattaccag tcatcgaaaa 3060 acctgaccta aaaatactgt gggatgttac catccaaaca gatagggaaa tccaagcccg 3120 aagacctgac atcgtaatag tgaacagaaa agaaggtgaa tgcatagtaa ttgatattgc 3180 tgtgccagga gatgctaatg tcggcgaaaa ggaaaaggag aaagtcctga aataccagga 3240 tataagaaga gaaattgccc gattatggga cataaagaca tgtgttgtcc caatcgttgt 3300 tggcgctctc ggaacagtca gtaaaaactt gacaaagcat ttaagttcga ttggcttaaa 3360 gacaaggatc gagttactcc agaaaggagc tctcctcgga tcagcgcggc tactaagaca 3420 ggtgctcgag gtctgaggtc gtaggatacg acttgacctc gatacataac ctaccagctg 3480 ttaacagctg tgatcgaata tgtacataat aataa 3515 // ID Gypsy-52-I_NV repbase; DNA; NEM; 6164 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-52_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52-I_NV; KW Gypsy-52-LTR_NV; Gypsy-52_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6164 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-6164 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-52_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 539-539 (2007). XX DR [2] (Consensus) XX SQ Sequence 6164 BP; 1816 A; 1247 C; 1603 G; 1498 T; 0 other; ttttggtgac cccgacgtga tccagtgagg gagaaggttt tgtttgactt caagattgga 60 ttctcgcttg ctggagatat atctgagatt ggattcgtgg aatgttatgg tagcgaagcc 120 acaagaggga tttatgccgg gcttcttgta ctagttttct gatcagtgga gtataacgtc 180 aaggagtttc agtgttgtac gacgggtgtg cgaaatggaa gatttgctgt ttggaatcga 240 gggcaaagtt tgtggttttt cggttgccga gctcgaggaa ctggggcaat atcttaaagt 300 cgagaggtac aaaggaaagg gacgtttatt actctctaag aagattcgct ccgaattaga 360 gaatcagata caacaaagtt aggaaaacgg caataaggag gaattcgtca aggaaatatg 420 gtcgttcgtg aataaatcct cgaatgaaac gacgatgaac atgatcagct cagcaggaaa 480 tacaagaaaa gccagagtat ttgcaggcca agcaagagta tgagggcttg caggcaaaaa 540 taaaagaaat gatggtcgct cagggtgagc tccttaaggc ggccgaggag aagatgaaac 600 tgttgcaacc gaaaggttca caagaggttg tgatagtgga ctcgccgaag gatttgaagg 660 atagtgtcag tcagtcaaaa caacaaccag ccgttcaagg acttcagggc ccgatgtttc 720 ggagagagtt caagatcgtt ggggctgtcg gtagcgaaaa ggacaaactc tcttttgtgg 780 gtttaagccg gcaaatagac agtggtttag ccaaagggca ttccgaaaca gaattagtcg 840 atgccgtgat acgggctatt gctcctggct ctaaactcaa agggtactta gagatagtta 900 gcgacgttac gttgccgaaa ctgcggcaaa tttttcgtgt cttctaccag gagaaaaccg 960 gcacagaact ctatcaggaa cttacgactt tgacccagac gccacagaaa gcccgcaaga 1020 tttcttactt cgggcgcttt ctctgagagg aagagttata tttgcgttaa aggcggcggg 1080 ggcagtgatg cgttacgagc catcgctcgt acactcactg tttcggcatg cagtggagac 1140 gggacttagg gatgaaacca tacggactaa actacgcggg actttgacag agggaattac 1200 ggatgaggaa ctgatggaca cttcgaataa aattgtatct gtggagagtg agaggcagat 1260 taaactgggt acgcggtcta aatctggtcc cttgctagcg ggcgccttaa cagcagatca 1320 gggaggcgaa gatactaaag aacaaaaacc tactaaaggg caacagttca acctcaaaaa 1380 gacactagaa ggaatccagg cggacctggc cgccctaaaa gcaaaagttg aagtaagagg 1440 cgtcgagttc gacggtgcga cgaaggctaa gagcttttcg aaaaagcttt gtgaggcatg 1500 ttcgcaagca aagttaactg ggtgttcaca ttgttttaaa tgcggctcag aagaacattt 1560 tgccagaggt tgcaagagta aaatccaggg aaacgggacg ccgctacgac cgccggacag 1620 gcagtagtgg aggaaagtaa atctgaatcc ccgttttgtt caaattgtgg aaaacatgga 1680 aatttgcttc gttgctctac agttgcacta ttgttcggaa caatgccaga aattacactg 1740 gaaagctcac aagtttcttt gcaaggctat caaacaatta acggagattg aacaacagaa 1800 actaatggac ggtgtatatg tgacccattt aacggttaat gagaggccaa gacttggaaa 1860 attagtagga aataaatgtg tagtgaactg ctgttttaat gaagtagacg ttagagcatt 1920 gtgggatacg ggtgctcagg tttcagtcat cactcagagt tttctaaaca cctatttccc 1980 taactgtgaa aagagagagc tttcggagct aatgggtgac atggatttgg atttgcgtgc 2040 agcaaacgga actaaaatcc cattcgatgg ttggtagggt tacgtgtcaa gctcaaggat 2100 gcggcgaata atcacgaagt tttggttccg tttctaatcg ctaaccagac tatggatctc 2160 cccatcattg gatttaatgt tatagaagaa attgtaaaag gttacgtcaa ggacgaggac 2220 aacgaattga attcggcgtt agctgcaagt ttgtatgatg tggaaccgga taatgttact 2280 caagttgtaa attttattca aactccaagg aaacccgagc tctgtatgct taaaacagca 2340 aaaccggatg tgctgataag aaagaaaagc tctgtgcgtg tcggttgtcg agctaatacg 2400 ggacagattg ataagaaaac ccctgcattg tttgaaccgg atgtactgag gaactggcct 2460 tcgggcttgg aaattaatga aactctggtg caactacaat gtggaaattc tagtcgtgtg 2520 tgtgtggatg tagttaataa cacgaaccat aatattattt taaagggaag aactgtgctt 2580 gggaaacttt atctggtgcg atctgttaca atgctgccac tagataagcc agaaataacg 2640 ccatcagagg aactcaatat gacaggattg gactcaccag caattgattt agcagatgaa 2700 ggaaatgtaa atatacaaca aatcaatcac aggaaattgg agacgaatga acaaactgaa 2760 tttgaaacaa attgtatatt aattgattca ctgtctgaaa tagatttgtc tggtttaacc 2820 ggaagtgagc gtgacatggc gatacggatg ttgaatgaag aaggtgattc gttttgcaag 2880 gttgattatg acattggctg tattccggac tttcaaataa agatcaattt gaaagacaat 2940 ggacctgttc aaatgaatta ttctagaatt cccaaaccgt ttcgttcacc ttactcgtcg 3000 gcgcttgttt gtgtacgcaa aaaggacgga aatttaaggc tatgcacgga tttccgcgca 3060 ttgaatagta aaactgtgtc cgaccgacat cctctaccac gggttaaaga tatactggac 3120 aacctttgag ggaacaagtg gttcagtatg ctggactaga gcaaggcata ccaccagggg 3180 tttatacacc ctgaatcaag gcacctcaca gcgtttgtta gcccctgggg actccaggag 3240 tgggtccgta tcccattcgg cttgaaaaat gcggtaccgg aataccagag gtttatggag 3300 aactgtttgg ctagtttgcg ggatgagata tgcgttccat acctcgatga cgtcatcgtt 3360 tttagtaaaa cgtttcagga acacctagat catgtgaggg ctgttttgcg acgattgagg 3420 gaacatggcg tcaaactgaa accacggaag tgtcgtttgt tccagcacga ggtcacatgt 3480 ctggggaggg ttgtgacgtc agagggccat cgctcggacc cctttaatac caaagcacta 3540 atcgatctca aagacagtca tccagagaca gtaggggagg tgcagaggct ccttggactt 3600 ttaggatatc acagacagta cattgcaaac ttctcgaaaa cggctaaatg cttatttcag 3660 ttaattcaag gcccacgtga caagtcgtca tcaagtaaag ggggaccgag ttcggcaacc 3720 aaggtcgcgt gggaagatga gcacaaaagg gcattgcaca gcctcattga ggctctcacg 3780 tcacctcctg tgctaagtta tcctgattgg actaaaccct atgttttgtt cacggacgct 3840 tccaaagatg ggctcggagc agcactgtac caggaacagg ataaccagtt gaaaccaatt 3900 ggttttgctt cgttcacttt atctccggca gagtacaact accatttaca ttcaggaaaa 3960 ctggagtttt tggcattaaa atgggcggtg tgtgagcatt ttcgcgacta cctcttctac 4020 gtgccgcact ttacggtatt caccgaaaca acccattgac atatgtcctc tcaacagcaa 4080 aactcaacgc caccggacac cgatgggttg gtgagttggc ggactttaat tttgtcctta 4140 agtaccaacc gggacgttta aacactgtcg cagatacact aaggcgcatg cctatggaca 4200 tcacgcaact aaacaataag tatcctaaca ttactagcca ggaggaaata agtgcaacgt 4260 ttgcaggaat caaggcggta accactgagg aggcagtttg gataacgtca ataagtgatg 4320 acgatagtgt gctaaagaca gcgttgaaag gaatggacgg tgaccggata gatactagcg 4380 acattttacg tgcgcaacaa ttggatccaa gtataagtcg ggttttagcc ctgaaacggg 4440 aggatgagac gcggccctct cgaggacagc tgcggagaga gacgcgtaac acgcgcgcac 4500 ttgtacgcga atcgagtaag ttggaaatag gagatgacgg gctgttaagg cgacgaacag 4560 tgaactactt acaactcgtt ctcccggcta gcatgaaact ctagtataca gagagttaca 4620 tcaagagatg ggacacttga gtgcagatag agttattcgg ttgtcaaggg agcgcttcta 4680 ctggccgggg atgcaacaag atataacgca ttttgtcact aaagtttgca cctgtttgaa 4740 gcagcgtcgt ccaaatgttc caacacgagc tccaatgcag aacatccagt ctactacttc 4800 attcgaactg atctcgatcg attacgttca cctagagaag tgcgtgggag gctattaata 4860 cttaatcgtg ggggtcgatt actttacgcg ttttgcgcaa gcatacccta caagaaacaa 4920 gtcaggcaag cctgcagccg accgcgtctt taatgacctg attccacggt ttggatcccc 4980 tgcgaggatc ctacatgatc agggaaagga gtttgaaaac gacttattca agcaattgga 5040 gagtttaagc ggcgtaagac atgctaggac aacgccctac caccctcagg ggaatgggaa 5100 ggtagaacgt tttaaccaga ctttgctggc tatgcttcgc acattaccag aaaacaaaaa 5160 gaacaggtgg aaggactacg taaacaaagt agtacatgcg tacaactgta cgccatgcga 5220 tgccacgggg tttgctcctt ttcacctgct gtttgggaga ccaaacggga aaggagcgcg 5280 tgctgcatag gaatctactg tttccttgtg atcacctgca ggacgcggca ccacccgttc 5340 aagcaccagc accagcgaga aggaggcgca ctcgccagca acctcgagtg gtatcagaca 5400 gcggttcgga gagcagcgac actgaggaat ctgatggttt cattgagtac cttccccgcc 5460 aagtaatggg tccggagcat actggaggtg taactgatga cgagagcggc gatgatgcgg 5520 ttgatctaga tgacgctgaa acgccgcgcg aggatgtatt ggccgctggc ggagatgtag 5580 acttggaggt agcagaaaac cgcgacgaga tgtacggggc tagcgacgat ggaagtgctg 5640 agtcttcggt gtgcgaaacg gaaagagttg gtcgtccaca acgctcgcgt gcaccgcctg 5700 tccgactagc gtacgacggg tatgggaatc aagtcctggt gcaagccatg cagcagcctg 5760 cgtatcatca agtctatgca aactatccgg tctacacatc ctatccctac acccaaccgt 5820 ttcacatgat gccctggcaa ggtcaatacc aagcagcgtg gtagctgaca tggactgact 5880 acgattattt ttgcttatta acttaacttt atattttatt ggtcatatta ttatactttg 5940 ttatcataac cacaagaaaa ttcaggcaag tttgtaaaga gtgtacttgt cacgaacaag 6000 taaaggtgta actacacaag ttattagata gtcgatagtt tagtaggatg gctgcgatag 6060 gactgatcac cccacttggc atcacaggag acctggacaa ctacgagagt ggacaaacaa 6120 atgcagctca cacacatagt gctagttctt aaagcaggtg agag 6164 // ID Gypsy-54-I_NV repbase; DNA; NEM; 3378 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-54_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54-I_NV; KW Gypsy-54-LTR_NV; Gypsy-54_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3378 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3378 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-54_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 543-543 (2007). XX DR [2] (Consensus) XX SQ Sequence 3378 BP; 1211 A; 606 C; 719 G; 842 T; 0 other; ttaaatggta ccaggagtca aaatgaatag cataccgccc ccacaacctc taaatctgac 60 tgggaatgtc gacgaggcgt ggaagaagtt taaacaacga ttcgagctgt atattcaagc 120 catagaagct cacaagaaat cagacgagca gaaaatcgca ctgcttttga cggtcgccgg 180 gccagaggta attgaagttt ttaataccct aaccttctca gaggaagaga aaggtaaata 240 tgatgttgtt attcagaaat tagaagaata ttgcacacct aagaagaacg aaacgtacga 300 aagatatgtt ttccgttcac gaatgcaaaa ggaaagtgaa agctttgaac agtttgtcac 360 agacctcaag acgaaaagtc agactttgga atacttaaga atttcctgat aagagatcaa 420 attgtgattg gcatttccga taagaaagta aaagaaaggc tcctgagaga aaatgatctt 480 gacagatttc tcaagcctct gaaattgcca aaattcaaat gaaaagccta gagaatcaag 540 aaggagtggt tgaggtacat gcgctaaata agcataagag taaaccccaa ggaaaacagg 600 gaggggccaa acataagaat tcatgtcaga ggtgtggaaa agtccacgaa ccagggaaat 660 gctttgcata caacaaaact tgtcacaact gtcacaagaa gaatcacttt caagttatgt 720 gccgcaggaa ctgtttacac acgaaaggaa acagaaaagg acagagatct ttttctaggc 780 gtaatacaga aaacacatga aaccaaaaag agtgattggc taatacaggc acaagtagaa 840 ggcacaaaga ttaaattcta attggatacg ggtgcccaag taaatgtctt accccttagt 900 gagtacaaaa agctagtaaa caagcctcaa atgaggccaa ctaagatgac aataaggtca 960 tacactggag agaaaaagag agaaaaagat gaagtgtttt ttgtcatagt acttcaagaa 1020 tgtcaagcaa tcttaggatt aaagacatgt gaaaagttta aactaataac aatggttaat 1080 actgttatca aggaccgtac catgggagat aacaactata gtgacaacaa cgatcacaca 1140 ttcaaagatg aaataatgaa tgaatttgct gatgtatttg agaaggtata gggtgtcttc 1200 cagttacaag attaagctca aggatgatgc taaccctgtt atacatcctg caaggaaatt 1260 tcctgtgagt ctgagcgaaa ggctagataa ggagctcaat cggttgacca agctgggaat 1320 tgtaaagaag atagaagaac caaccgagtg ggtaaattcc cttgttattg tagaaaagcc 1380 aaatagtgac ctaaggcttt gcttgaatcc aaaagatcta aatcagtgca acatgagaga 1440 acactatcgc attccaacaa gaagtgaaat aacaaaaaca tgtctggagc caaatatttt 1500 tcaaaacttg atgcgtcatc aggattctgg caaattccct tagatgaaga aagttctaag 1560 ctctgcacat ttaacacacc caatggcaga tactgcttct taatgatgcc atttggaatt 1620 tccagccctc ctgaagtttt ccatcgtact attgctcagt tgtttgaagg catggacggt 1680 gttacatcaa ttcatgatga tatattagta tggggaaaca cagtaagtga gcatgatgaa 1740 cgattgcgta agaccctatc taaggcacag gaagttgggt tgaaactcaa tgtgaataag 1800 tgtcgtttca gagtcaagga actgactttc cttggtgaca agatcactac agaaggagtc 1860 caacctgatc ctgacaaggt aaatgctata caagacatgc cccgccccac atgtaaagtc 1920 gagctacaga gatacttcgg aatggtcaac tacttaggca agtttgtacc aaatctatct 1980 gccaagacgg tagcccttag aagcttatag aagatgcaaa tgagtttcag ttgaagcaga 2040 acacgaggca gagtggaagc agctgaatga cttcctgacc actgaaccag tgttgaagtt 2100 tcatgatcca ctaagaaaga cgaaggtgtc atccgatgct tcgaaggatg gtctaggagc 2160 tgtcctattg caagactatg aaggaacatg gaagccggtt gcatacgctt caaggactag 2220 acacaggcag agaaaagata tgcacagata gaaaaagaga cactaggcat ggtctttgca 2280 tatgagaagt tttacgaata tatctatgga atcatagcaa atgtgattgc tgagaccgac 2340 cacaaaccct tgattgccat atctaagaag aatttaagcg acaccactct cagaatacag 2400 agactcatgt tacgactgca aagatatgtt cttcaatttg aatacctacc aggaaagttc 2460 cttattgtag ctgatacatt gtcaagagct agcctcacag gaactaacac cactattgat 2520 atcgataatg aggttgaaat acatgttaat atgatcaaag cttctcttcc agtgacagag 2580 aacagatgga aagccgatgc aactgcagca gacagagaac tacaagatgt aatcaagcat 2640 ttgaactgtg gttgggaaca agggccgttt cccaagccat actatcactt ccgtggtaag 2700 ttaaatgtgt tttgatggtg tgatactaag tgatcggatt cccgaatttg atgcttttgt 2760 gaagtcatat ggaattgtac atactttttc tgatctatat aaccccaaat gaaatggaca 2820 agcagagaaa ggagttcaga ttgcacaaaa cttactcaaa aggtcagtca gaaagcaagg 2880 aggatacata tttggcattg ttagcctacc gaaacacacc cttagcttgt ggaaagtctc 2940 ctgctgaact tatgatgaat ctcaagttga gaacaaagct accaagttct tcacacttta 3000 agtcacaaac aagtcttcgt gcaacacaag aaagactttg acagaaaagt tctatgatgt 3060 taagtctaaa ccattgagac ccttagataa aaatgagacg attagaaatc gtatccttct 3120 actacaaata agtttaaaga gcttccagtt actgttgatt gagatacaag tgctcagatg 3180 agtgcagaaa gcaagacaca ggtggtaaat gcaccacaga aaggtactgt tgttgataaa 3240 gaaccagact caaaaaagaa atctgtttaa tagaacatga acatttctga actatgagta 3300 ttagttgtcg tattaaatcc atttgacttc gttacagttg ttgtttagtt tatgatattt 3360 ttcttaaaag aaaagaga 3378 // ID BEL-4-LTR_NV repbase; DNA; NEM; 212 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 31-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone BEL-4_NV autonomous LTR DE Retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-4-I_NV; KW BEL-4-LTR_NV; BEL-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-212 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-212 RA Kapitonov V.V. and Jurka J.; RT "BEL-4_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 371-371 (2007). XX DR [2] (Consensus) XX SQ Sequence 212 BP; 43 A; 45 C; 51 G; 73 T; 0 other; tgttttgaac gatttacata tgttgatttt gcatttttcc cttatgtaag cgcgggagcc 60 ctgtgtccga accgcgcggg actagggagg ggggttgctt tgtaatttgt acagttcggt 120 tttgtccgcc acgaactgca acgagtttgc cgttttttct tcgtttagca ttaaaaaata 180 cagtccctta tcagtcgtcg tcgtccataa ca 212 // ID L1-3_NV repbase; DNA; NEM; 4565 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone L1-3_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4565 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4565 RA Kapitonov V.V. and Jurka J.; RT "L1-3_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 607-607 (2007). XX DR [2] (Consensus) XX SQ Sequence 4565 BP; 1661 A; 846 C; 862 G; 1196 T; 0 other; gatgcaagta caaatagtca gcgggcagaa aaacgacgga agcgttcgcg tacgaaaagc 60 tcgcaaacaa atggaggaca gccattacga gtatgattgc aaccacgcac tactcgtgga 120 caaactagaa ttaatgaacg caaaacccga ctcaactatg ctagccatta aacagctaca 180 aggaatgaaa aagcagatct atactctgaa acaggaaaac caagaactca aaaaaagctt 240 ggaattttca caagaagaga ttataacgat caaggaagaa ttcaagatgg cggacacgaa 300 gcttgaagaa atgtcaagtc aagtcagcct gctggaagag aagctcgctg cagaaagaag 360 tagaggcgtc aagctggaaa gcttttcaag gagaaacaac ttgcgcttct tcggaattcc 420 tgaaggtaca aatgaatctt ggaacggtac agaagaagcg gtaagggact tcattcataa 480 aaatctaaaa gcgggaccga aacaagcagg agatgtcagc tttgagagag ttcaccgcac 540 aggtactgaa gataagtcgt cgccacgccc tattatagcg aaattttcct tctttaagga 600 taaagaagag gtgcgtagct tagcgaaaaa cctggccgga acgagcttcg gaatcgctga 660 agactatcca aaagagattg ccgatgttcg taaaaagccc gtacctgtcc ttaaagatgc 720 cagggcaaac aatcacaagg cgtacattaa gtttgataag ctatttatta acgatgcgct 780 ttacaccggc ccggaagggt atagagctta ttaggctacc actcgaaatc agtttctttc 840 catatatact tgcaaatgta cttaggaaat tagattccgc ctggaaacgt ttcatctcgg 900 atttcccagt agaatttacg cttgaggcca ttatttctag atcagtttta aaggcggcct 960 taaatttgtt atctagcaga tagcaaaatt gttgatgcaa aacttgttgt ttttccgtac 1020 gcataataat cagtactgtt tatgcatcat gcgacatttt tcaatgtttt attgtaatct 1080 atgttttgtc ctgttcattg tctttcaaat agcagctaca cacctccttc tattttctga 1140 atgcacagct cattataacc cgtgaaatgc ctttcaatat cactgcttgc tccttaaatg 1200 cacgcggaat gaacacaaca aaaaagcgca ggcaaatctt tagatggttg cacaatcaaa 1260 aatacagact aatttgcttt caagaaagct acagcagcaa gtccctagag aagatatggg 1320 cggcggaatg gggtggacca atattttaca gccacggaag taatcacagc aaaagtttga 1380 tggttttgat caatccaaaa cttgactcac aaatttcaaa ctctgttacg gataaaaatg 1440 gcaggtattt gatccttgaa atcacaatcg aagactctcc gtttgtcctt gtcaatacct 1500 atgcgcctaa tgacataaaa caacagcaac tcttcttcga cacagtcaaa gaaaaattgc 1560 gcgctttttc aggcaaacaa atcttatggg caggtgatca taactgcgcg ttgacgccat 1620 tagataaaag cggcggaaca gatgttagca aaaaacacat agtaatcgat gaaataaaaa 1680 gagcttgcgc ctcgcttgat cttgttgata tttggagaaa tcagcaccaa aatataagac 1740 aatacacgtg gcacaataga aatttaaaaa tacaatgcag actagactac tggttggtct 1800 caaactcaac agcttcgata atggaaaact cgaatattct tgcaacaagt ttttctgatc 1860 actctgccgc cattatcgaa ctaaaatcca aagattttgt caagcgtgga cgcgggtttt 1920 ggaaatctaa taacctgctt cttaaagacc taaagtttat tgaggaattg aaagacacta 1980 tcacgtcgca aaaacaatgc taccgcacaa tgaaagattc acgcctaaaa tgggatatgc 2040 taaagatgga tattagaaca ttttccgtga agtactccaa aggaaaagca agagaaagaa 2100 aagataaaga gagagaatta caagccgaat ttaatattgt gcagcaaaaa ttgaacgaag 2160 atatgagcga taagagaata tgtgtaaatt ttatgaaacc aagcacaaat tagatttgct 2220 cgcacgacaa aaaacaaaag gcacgatcat tcgaagccga gccaagtggc acgaaatggg 2280 tgagaaaaat acgagatatt tccttaactt agaaagaaga caacatgaca gtaaatacat 2340 tacaaaactg aatgatgaca aaagcaaaga aatcacagat cagaaagaaa ttatgaatga 2400 aatacaagat ttctacgaaa aactttacac gtcatctcaa gaaaatgagg gcgtgtccac 2460 ttgctctgag tatttcttta gcacaccccc aagtaaaata ctaaatgaca gcgaacaaaa 2520 gctatgtgaa gggagacact tagaagatga attcgtacaa tgttttaatg cagcctttga 2580 aagaggcgaa atgtcaatat cacaaaaacg aggcgtcata actcttattc caaagaaaac 2640 aaccaataga ttttatttaa agaattggag acctataacc cttttaaatg ttgactataa 2700 aatcgcgtca aaaacaatag caactagaat atcaaagctg ctgccagaca tcatacaccc 2760 aaatcaaact ggttatgtgc gtaatcgata tatagggcag aacgtgcgca tgattttcga 2820 tctaatggat gtgacgcaaa cagaagatat ccctggaatt gctcttttct tagattttca 2880 aaaagctttt gatagccttg agtggaattt tataaggaaa acattgaaaa cattcaattt 2940 tggcccagac ataatcaagt ggtttaatac attctacaac gacatttcta gctgtgcgct 3000 aaacaacgga tatgccacac cctttttcag cctccacaga ggattaagac aaggatgccc 3060 aatgagtggg attctgttca ttttagcggc cgagatttca ggaaatgcaa taggaaaaga 3120 tgaacaaatt agaggaatta atatcaacaa ttcagaattc aaatgaacac aatatgcaga 3180 tgacacgaca atctttgtag ctgacatgaa atcagcaaat cacctctttg cgctctcaaa 3240 gaaatttaac aaatgctccg ggttaaaggt aaatctttcg aaatcagaag gcctctggct 3300 gggtagaaac agacattgtc aagaaacgcc tttcggtatc cgctggccaa agaaatcagt 3360 ttacgcactc ggcatccatt tcacttatga taaaataacc ttaaaaaaag aatatctcag 3420 tgttaaactt gaaagcatga aaaaactctt agacgtttgg aaaatgagaa acctcacgtt 3480 agagggaaaa attaatattg ttaaaacctt ggcactatca aaacttacat acgtcgcttc 3540 tttgatatca attgacaatg actttacgac tgaagtaaac aaaataattt ggtcttttat 3600 ttgggacaga aaactcaaaa tttcaaacag agaggatcac catactttta gtgtaaaatt 3660 gatgagtgat acagaatcca tatcatcatt ttattcatag gcacaatatt tctgctttgt 3720 tttgacaagg gaattcttaa taaatctcac aatttcaatt ttctgaatct cagactaaaa 3780 ctaaaacaaa ataagcttat tccccaccta ctggggacga ggagagctgc taataagacg 3840 cgaaatccca actaaagtcc cacatattct ggggtccggg atgatattta tactatattt 3900 atcactcatc taaaatcgga tataaatcag atattttttc acagggttct agtatcagat 3960 atttagtcga tattataaca aagctcacaa acctaatttc tgatatttat cagatcttat 4020 acccttagaa ctgccatgtt gaacctagat tattgcatct catgacttga taatatcaga 4080 taatattgca agatttacac atagatagtc catctaatta ctgatatata tatatcagat 4140 actataactt tagaactgct gtgttgaacc ttgattattt catctcatga cttgataata 4200 taatataata tcacatatat actcgttcta caaacgtgac agtcacagta gatttcgtag 4260 tcgaatatcc gataatatcg aggggtccag cagagaggac gaatgaatct ctatagatat 4320 ctagtagatt ctaataagat aatctcagat aatatcacaa tatcgagggg tagagcagat 4380 gaaaggagag gatctaaata gacatctagt agattctaat aagataatct ccgatattat 4440 cacaatatcg aggggtccag cagatggaag gagggtatct aaatagacat ctagtagatt 4500 aaataaaata atctccgata atatcacaat atcgagggat gaggaaagga gaggaagggg 4560 tctaa 4565 // ID LTR-2_NV repbase; DNA; NEM; 746 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Solo LTR in the anemone genome - consensus. XX KW LTR Retrotransposon; Transposable Element; LTR-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-746 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-746 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-746 RA Kapitonov V.V. and Jurka J.; RT "Solo LTRs in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Copies are flanked by 4-bp TSDs. XX SQ Sequence 746 BP; 211 A; 175 C; 118 G; 242 T; 0 other; tgttgtgcga ctattctaca acattctcat aaataaatat tctagaaatc ctagtttgct 60 caccggatct caatattgac cttttatcac cttttcacct ttcattctga atactaagta 120 tgcacctgct agtcatacag gtcatgcgca gtgtgaccta tgccaaaacc agtttagcgt 180 ttaccttaga taaacattta ctttacagac atttcgaaca agccaaacga atccctcagc 240 ctcattattc tgtagtattt tatataataa ttatttctag tcaattgatt gttattctat 300 catcgacgga ttcttactat agttatcctc aattgtgaaa ttgttctgtt cccttagatc 360 aacatttatt tgcaattctt gcatcacctc tcttagagca gtcaaaccag ttagtaccga 420 attattaatt agtcagtata aataggagtt cactgtaaaa catattgcac ttgtaataac 480 gacagcttgc tgcggaggct atcgagtaag ttctgttggc ttcgtgaaga caatccctag 540 tcaaggaaga ggtctagtaa ggattccctt ctatcagcct cgccttctga gaatcgtctg 600 atcgttacct cctagaacga gcttgaatac ctccctgctc gctaaaaaga gcttgtcctt 660 acaataaacg ctactgtgaa ccagcaacca gccgttcgta ttgtgacctc ccgcatgcac 720 tttgacctag ttcacccctg acaaca 746 // ID DNA-9-15A_NV repbase; DNA; NEM; 73 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-15A_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; KW DNA-9-15A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-73 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-73 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-73 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-15A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 73 BP; 19 A; 18 C; 17 G; 19 T; 0 other; tagcctgcgt gcagccggaa atagttccat tattaccgta ataatggaac tatttccggc 60 tgcacgcagg cta 73 // ID DIRS-35_NV repbase; DNA; NEM; 825 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-35_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-35_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-825 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-825 RA Kapitonov V.V. and Jurka J.; RT "DIRS-35_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 431-431 (2007). XX DR [2] (Consensus) XX SQ Sequence 825 BP; 246 A; 156 C; 169 G; 254 T; 0 other; cctatgcctg ctttgcacta tcatgtggcg cttcatcttc agtggctgat gctagacgca 60 aattcacccg cccctttaga agcagcatca catggcataa cttgggctca tcagatagct 120 gcttatccct cgcctacaga acatcctctt gtcaaacaag ttatggcagg tgctaaacgt 180 attctggcgc gtccaaagat gaaaaaggag ccaataactg tagttcagtt agaacagtta 240 gttaaagata aagataaggc cggtcctttt gcttcattgt acgatttaag atcagtttca 300 ttaggtttgt tagcttttgc cgctttttcg agatttgatg aattagcaaa tctcactttg 360 tcagatttaa ctcttcggga agattatttg gagatttcta ttaaatctgc caaaaccgat 420 caactaagag aggaaaattg cgtgctttta gcagcttcac agaagtctac ttgtccagtg 480 tctattattt ctagatattt aaaagtagca aagctgaatt atgaggattt catattttgt 540 caaatttcta aatgtttgac aggctataag cctagagcag gaaaaaggaa attaagttat 600 actaggctca gagagctagt tcttgaagcg ttttcaggca ttattcctaa tataacagac 660 atcggcaccc atagccatag aagtggcggt gcaacagcag cagttgcagc aggcgtcgca 720 gatagattat ttcaaataca tggccgatgg aaaagttctt gtgcaaaaga tggttatatt 780 aaggattcta atattgctaa actttcagtt tctcaatcat tggta 825 // ID DIRS-30_NV repbase; DNA; NEM; 4315 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-30_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-30_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4315 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4315 RA Kapitonov V.V. and Jurka J.; RT "DIRS-30_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 426-426 (2007). XX DR [2] (Consensus) XX SQ Sequence 4315 BP; 1133 A; 925 C; 895 G; 1362 T; 0 other; cctctattta atttgttggt ttctacctac aaatttgtct gtaggtttct acctacagcg 60 atgggggttt ctacctctat ttaatttgtt ggtttctacc tgcaaatttg tctgtaagtt 120 tctacctaca gcgatggggg tctctacctc tatttaattt gtgggtttct acctgcaaat 180 ttgtctgtag gttcctacct acagcaatgg ggctttctat ttctatttat ttatttagtt 240 attcatttat ttattcattc attcatttat ttatttatac actattcata caattttgtt 300 ttgatgtttt aggtcaggca tctcccatcc ttttttattc attccagatg cctccaagac 360 gttcaacgag aaaaccaaaa catactgccg aaccgaacct ggttgtagag gtgcctgccc 420 ctcctaaaaa acgcacacga gctggccgca ggacaacaga ggctgaaatc attccagcga 480 catcaacaga atcagctacc cttgtcgcag atatagtgag gagagtgact gccgaggtaa 540 cgcagacagt aacctctgaa gtgacgagac agctgctccc gttaatacag caagcacaac 600 ctgctgctat tcctgacaac cctcctgtcc ttccattgga gccattgcct gctgccatcg 660 tggaggattc tatttcatca atacaggacg ctctgtcagg tatggagccc aaccaaagct 720 tgttgtccat tggcgtacct atagaccacc gcgtctctgt gaaattacgc agtaagattt 780 gcaataacga atttatcgac tttggattat tgatagatag ttctgtgaag gcagatagat 840 ttcaaatcac attgtcctca gtacataaag gggccgacca tcggtctgtt ttgagccaac 900 aagtaagcca aaacgtattc gctcaataga tgattggcta tcagcatttc atgtttttgt 960 tgggttatat ttacgaaagt accctaatga gggcccagct ctcatgaagt atggggatgt 1020 cattcaggat ttggctgtca gggggcagaa ttggcaacta tacaatgaga atttcggatc 1080 aatgcgggag acaagggcat ctgcaatgcc ttgggatgca attcactccg agctatggct 1140 tcgctcccaa ggtactcaga cccagaggcc aacttttaag ggcgcagcca agcctgtggc 1200 caggcatttg tcgggtatgc caaaaggagt atgttataac ttccacaggg gagcgggttg 1260 ctcaggctgt gacaacaaac atacttgcta caactgtggg gcgtcacacc ctgccttttc 1320 ttgtaatttt cgtccccaaa acaagtttaa caggccccag acggcccaat cccgcaatgg 1380 aacccccaac acttccaaca ccagtaaaaa gtgatagact tattaaattg ttaaccggct 1440 atgagccttc ccttgttcaa caactgcaca gtggctttac taagggtttt cctcttcatt 1500 ttgaagggga aagagtatct tttgaagcca agtggtggat agtaaaatcg gcaaggaatt 1560 agaaatggga cgcttagcag gtcctttcga tttcccacct ttccctgttt ttcgcctggg 1620 cgctgtgcct aagaaggccc caggagactt attcatcatc tgtctttccc tgatggcgat 1680 accgtgaatt ccggcatttc atctgataat actagtgttc tctattcaac aattagtgat 1740 gttattcaac tcgttaagtt agttggtcgc gggtcctttt tggctaaaac agatattaaa 1800 agtgcatttc gcataatacc aataaggcca gaagacaatc acttattagg aatcaaatgg 1860 agagacgtat attactatga tcgttgtatg ccaatgggct gctcaaattc gtgtaagacc 1920 tttgagacat ttagtatagc tattcagtgg atagctcagt ctcaattcag gataaccaat 1980 atgcttcatt tgctagatga ttttttgatt gtagcaccat cagccgaatt atgtcagcga 2040 cagcttgagg tgtttttgga tctttgtgca tatcttggaa tcccaatggc accagagaaa 2100 acctgcggcc catctcctac attatcattt gcaggcatag aactggatac aatccagatg 2160 gaggctaggt taccccagga taagctagat aaatgcatta cacttattac tgagtttttg 2220 cgccttaaaa aaatttcatt acgtgagcta caatctctgg ttggattatt aaattttgct 2280 tgctctgtgg tcatcccggg tagagccttt ttatgtcgtt taatcaactt gacgataggc 2340 attaaggcag ctcatcataa aataaggttg actaaggccg ctaaggaaga tttaaatgta 2400 tggctggttt ttctgtcctc tttcaatggt tgtttatttt tcttagacgg ttactggtcc 2460 aattctcaga aattgagatt atatacagat gcagctggtt ccttgggctt tggtgccata 2520 tttggtaacg agtggtgtta tggtagttgg ccatcttctt ggttggacaa gaacatagca 2580 acattggagt tttaccccat agtattaggt cttcagcttt ggggccacct gatgcagaat 2640 aaatgtgtat tgtttttcac cgataatgag gctttagtgc atgttataaa caagcaatcg 2700 tgccaggata aatccctcat gttctttgta cgtaagctgg tcttgatttg cttacagaac 2760 aacatcttgt ttaaagcaaa acacatacca ggcgttcaga atactctggc tgatagatta 2820 tctcgcttgc agatggatgc tttcaagcgc ctggccccag attccatgaa taccacacca 2880 gtggacattc cgcaggaatg gctcccacaa aattggcagc tatagtcagt gagctcatgc 2940 attctagcct tcaaccttct tcgcgcccta cttacaagag ggcttgggta ttatttagac 3000 agttcttaga cgataccttt aacactgcgc aagtttcgtt gcccatttca cccacaatgt 3060 tagctctctt tttgacttac ctgtttgaca agcaatatgc cccatcaaca gtaaatacct 3120 atgtgtcagc tttaggctat tctcacaaat tagcaggtct ccctgaccca actaaggtat 3180 tttatatcat tcagatgctc aaaggctaca ctaaactggg ttctagggtg gactgtaggt 3240 tacctatttc attaccaata ctgcgtaaga ttgtgtctgc tgccccctca gtcaccgggt 3300 cagtctttca ggagacattg tttcgtacaa tgtgtctaac agcatttttt gcttttttga 3360 gagttggaga aatgactgtc aatcaaaagg aggctaacct cccattgcaa ttgcatcagc 3420 tatctcccat actcaacagt gataacaaag tgacagggta taaagtgtca tttcaggatt 3480 ttaagcatag ctataaccag cctacttttt ctataactat aaaccgtcag aagggtattt 3540 gtcctgtaac agctttaact gagtatctac ggttaagggg ttcccgtgca ggtgctttat 3600 ttctaggtat cgatggtagc cctgtgtctc gaagtacttt ttcttctctg ctctgtcaag 3660 ctattaaata ctgtggcctt gattcttcta agtataaggg acatagcttc cgcattggtg 3720 cagctagcca tgtaaccaat ctcggctttt ccgatgcaca gattcgcaca ctaagccgtt 3780 ggaagtccaa cgctttcctc agatacattc gtattgctaa catttctaat tgaattcctt 3840 aataaagcta ctgtgcagtg tagggcacta tgtcttgcaa ggacattcat agtgcaccca 3900 attatttttc tcgtttcaat ttactagtta attttattta ataaaggtac cctttctggg 3960 tttattcgtt ttatttggtg gcatgttttg caagggcact catgtccaat tttaggcact 4020 acggtagtaa gctcaacact atgttttgca agggcattca tagtgataac cttagtatta 4080 gtagtaattt tggcttaggt gtggtggcat gtcttgcaag ggcattcatg tctttatgcc 4140 taaaacctgt agtccaggca tttgggagta aaaagttaca cactatgtct tgcaagagca 4200 ttcatagtga accccatgcc cttgcatgtt ttgcatattt tcgtggatat tatgtccttt 4260 aattgatcaa atttataagg gcaaggtgac atgtcctaca agagtagtca tgtac 4315 // ID DNA-5-20_NV repbase; DNA; NEM; 334 BP. XX AC . XX DT 18-MAR-2011 (Rel. 16.03, Created) DT 18-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-5-20_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP203; KW DNA-5-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 3-334 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 3-334 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-334 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-20_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 81-93% identical to the consensus. It was reported CC originally as the unclassified NVREP203 transposable element CC [1,2]. XX SQ Sequence 334 BP; 82 A; 118 C; 62 G; 72 T; 0 other; caggggcggc ggaaggggag gggcaggggg gcgccagccc ccccaccttt gaaacttttc 60 tgagcggatg tttctttata tatgaacgtt ttttttaacc aacgggtttc aagcggtaca 120 tatgcaaccg acaacaaatt tgttgaacag tttaaaatcc cgtgcataaa aacctaggtt 180 atcccccgcg ttcttataaa tagcgcttaa gaatttgaaa ccaccaccca cccctctccc 240 cctgaaacca ccaaccaccc ctccccctga aaccactacc cccccccccc cccaactttc 300 gccccccact tatgggacca ctccgccgcc cctg 334 // ID Helitron-N11_NV repbase; DNA; NEM; 1301 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Helitron-N11_NV non-autonomous DNA transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW AT target site; 0-bp TSD; NVREP107; Helitron-N11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 6-657 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 6-657 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1301 RA Kapitonov V. and Jurka J.; RT "A family of Helitron-N11_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~92% identical to the consensus. It was reported CC originally as a portion of the unclassified NVREP107 transposable CC element [1,2]. XX SQ Sequence 1301 BP; 461 A; 254 C; 228 G; 358 T; 0 other; tctatactat atataatacg ctaaggaatg gactgttgtc caccttttac gaaaaaacgg 60 ctgagctaga aaactccgaa accacgccat ttccacacat tgccggagag gaggtgtgca 120 aaatggtttt tatttcaaga ttataccgga tagaaaagtt ctaactcacg cgtttttgta 180 agcgagagga tcacactcgc aaaggcgcca ttttcaagat ttcacagaag cacaaaaata 240 atttatttcc cgcagcaaaa aggactaatg accttcagac ctccgtgtct ctcaagaaaa 300 acacactaaa agtatacagt aataagtcta tctccaaaaa tatcatcgta gaggagaaat 360 cttattctag acaatttcgg aagatgtgta aacaaacctt cgagcgcgcg gaaaatcaaa 420 tctgaaaaag aattcgaata cttgccgtag tttcattgca tagatagatt aattgtagct 480 gaaaacacaa ccgtcttttt atcgttattt agaaaggcat tattcctacc tcgaaaagaa 540 agtagattct ttagctccat cgcgcataaa caaaacggtt cgcaaacaag aaaacggaag 600 aaaagagctt ttatctacaa ctgcaagact tttgactttt gaacaacttc aattcaatcc 660 attaaaggac ggtgcataaa cgcttattta atcagatcga gatggtgcac aacacttctt 720 attttatcag atcaatctcg atataagaag taagtactct tcgatttttt tataaaagca 780 aaaggtttgt tcattacaaa tagttggcgg tcattttgtg ttttcagacc cacatacctt 840 ttatgtcaca tcgattttca ttaaaaagta tggaatcgac caccaaataa cacaccaagc 900 caagaaagcc aacgaagcga ggattcacga tccactctct tattcacaaa acccaacata 960 tgaacgtgcg aactggcatg gtttgaattt ggttgtccga ttcccgccaa aaacatcatg 1020 cacagggttc ccaacacgga tataggaaaa ggtggaatac taaaatacgg gcggtatttt 1080 atagaaagcg ccttttcaca tttttataag gtaaattaaa tatgagataa atatattggg 1140 gactcaaaag ggaggcattt gtttaattaa tgtttacgac gacgcatact attcccctaa 1200 agcaccagga agcccaatac attgaaggat tgaaatatac cttaaaaagt tttgtacaac 1260 aaagaattgc ttttcgtgaa tatttcacgg gtaaccacta g 1301 // ID DNA-TWA-2_NV repbase; DNA; NEM; 685 BP. XX AC . XX DT 23-MAR-2011 (Rel. 16.03, Created) DT 23-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TWA-2_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP338; KW DNA-TWA-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-597 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-597 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-685 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TWA-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (23-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~95% identical to the consensus. It was reported CC originally as the unclassified NVREP338 transposable element CC [1,2]. It belongs to the same superfamily together with CC DNA-TWA-1_NV. XX SQ Sequence 685 BP; 221 A; 156 C; 136 G; 172 T; 0 other; tgctgtgttt acacttgagc gtccaaccta ggttgagtaa ctacccaacc taggttagat 60 ttgaagtgtg tgtgaacacg ctccaaatag ccacttatgt gccggcaatt acaaaggatc 120 cgcaacctag gttcggttga gctcaaccat tccaggaggc atggttgagc gtactcaacc 180 gaggttacag gcaaatctgt tgacagttct tgtcagctat cgctttccga tgtcagtcat 240 ttctcaaata gtgtttactc aatagtcatg agattaccac atgttttcga gatccgcgca 300 ttttgctgga cattttacac aatactttac aacaaactta gttttcaagt caagggactg 360 cgaatcccta acgtactagc gcaaaaaaac tcaacgaaaa cgacaaacat aagagaaaac 420 atcaggcaag gtggtcccta aaagatcatc ttgaattata gtgaatcttg taagcagaag 480 ccaccacaga ataacaagaa cggccagaaa aatcacaata atcgcagcag caatttgacc 540 tcagaattca aattgataac accggcgctg ttccagctga atgatcaacc gaggttaagt 600 tttcaagtgt aaacgcattt ctcctaaccg gggttcagtt aaccacaaac tgaacctagg 660 ttgacgctca agtgtaaaca cagca 685 // ID TE-20_NV repbase; DNA; NEM; 1158 BP. XX AC . XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-20_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP149; TE-20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1158 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1158 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1158 RA Kapitonov V. and Jurka J.; RT "A family of TE-20_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (16-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~94% identical to the consensus. It was reported CC originally as the unclassified NVREP149 tranpossable element. Its CC contains a 149-bp palindrome at its 3' terminus. XX SQ Sequence 1158 BP; 365 A; 233 C; 217 G; 343 T; 0 other; ttattatatg gctacgatag tacgcgcgct gtgattggct aattggtagt cgtgacattc 60 ccgtattgcc cgtctctgag ggcattacgg aattccgtat tgccctacga aaaatttttc 120 acaatcttct gttttttgaa attttttcca ccttcaaact gcaaaacgag cgacagcgaa 180 cattcgagta gcgaattcta acacccagaa gaaacagaaa tgtttaatcg gcgggccgtc 240 tttttccgta ttcggagcgg gacattttgt gagctttttt gtgttgcttt gttcggttgc 300 acgaatttcg ctaaaacaaa atcgaccaaa aaaccaaagc caccaaaaaa aaaaagaaac 360 aaacaggtct taaagttgat aatgggagag gacgagcact ttgagtcgga gttttattat 420 cctgaagaga ttgaagagga aaattttgac aaaaagaaaa acaataagat cacgagccgc 480 caccgatagc caagaaatac aaagcttaag ttatttatat cggataaaca aacaaatgaa 540 taaataacaa ggggtgtaaa gacccagaaa agtctcttta agataagtac tacctgttat 600 ttgtaaatgc aatatttcca tcaaatcata aagcagcaca aagcgattgg ccttttcatt 660 ttacttcaga agtttgttct ctacataccg tggagttttc gaactaaaca gtccattcat 720 gccgtgaaga ctgacaactc agctttcttt gttattgttt ggatcaactt cacctatgat 780 aaaacctgta gcttccaaaa gtgcaaatag aaagaaatag cccgaaaagt cgtccaatta 840 cttgttgttg aatcttttca ctcatttaca tttttgattt ggcagcgcgc gagtgtttct 900 tgttttcccg cctttttgaa atcgatcgat aaactaatcg atattcgcgc gaaagcgaaa 960 gttgatttgt tttcttgtca tttttatttt aaaaagccat ataataaaca acttactaac 1020 ctcgaccgtt cggtcatacc gggaaatatc aaacctcggc tttggcgcat cgacctcgca 1080 aagcctcggt cgatacgcca aagcctcagt ttgatatttc ccggcatgac ctcactctcg 1140 gttagtaagt agttaata 1158 // ID Kolobok-N13_NV repbase; DNA; NEM; 598 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP61; Kolobok-N13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-598 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 356-356 (2007). XX DR [1] (Consensus) XX CC Kolobok-N13_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N13_NV transposon CC is characterized by 25-bp TIRs (1 mismatch) and TTAA target site CC duplications. This family is composed of several hundred elements CC that have been transposable for a very long time: the youngest CC and oldest elements are ~9% and 20% divergent from the consensus CC sequence. XX SQ Sequence 598 BP; 156 A; 115 C; 135 G; 192 T; 0 other; acacgaacgc gcactataaa agggacttgc cttaggcaag ctgtcattcg tcatttgact 60 tcactgagtg cagagctccg tagagagagg ccagaaagct ataatagagc tcaagattgg 120 tcgaaaacac atcattgaag taaacacagt ctatttatta gccttttgtt ataacaaaac 180 gaaaaataag ggaggattag ataggttttg aagtgatgaa ttttgaaaat ttgttgtttg 240 ttcgcgcgcg cacctgaatg acgccatttc aaatgagcgc gcgcacgctg tttttgaatt 300 ttatttttca attcaaacga gcgcgcgctg tgtttgattt ctcaatgaca atttttgctc 360 ttgtttttgt agagaattga ctccaaacac tttcccgaat atgcctgata gttctttaac 420 aatctcttgt actttacagt tgtcgtagtt tgtcgtacgg ctttactttt tgctatgttt 480 tcttctggca gtttcagagg tcctcactca atgaagtcta gctgtgaatg gcgacgactt 540 gcgcgagagc ttgcgaaaaa gggggcggag ctatcccttt tatagcgcgc gttcgtgt 598 // ID Helitron-N1_NV repbase; DNA; NEM; 1526 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Helitron-N1_NV non-autonomous DNA transposon DE - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N1_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1526 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1526 RA Kapitonov V.V. and Jurka J.; RT "Helitron-N1_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 597-597 (2007). XX DR [2] (Consensus) XX SQ Sequence 1526 BP; 487 A; 310 C; 304 G; 425 T; 0 other; ttgctgcgac gcaggagcag catactaatc ttgacatcgc tttttaaaac tctctttcct 60 ttccattcac gagcatccgc ggcagaatat atgcgggtgt ttggttcgat tttggtttgg 120 ggtcttgttc cgcagcctca ctttgaaaaa tgaggccgcg agagactaga actaaatttc 180 agtttgacag attttgacag acgaacaatc gaacattgtg ccatgttttg acatgggact 240 cgtgatctct cgtacggtgt tcgtggtcaa taaatcaaca agaggagtgc acaagcaaga 300 tttttagagc acatttcggt aagtttggaa aaatgttcac tcgtcagtta cttgggacga 360 gttaccacag ctttcaaaga gtgttgaagg agaatttaat aacagtttca gaccgatttt 420 gccgacttat gagccgggtc ggaagcgtac cattcgtacc agcacacgtg ccatggtcgc 480 gtctcccgca gtcgatggag atctcgacaa aattgggcac taaacaagca aaacgagcat 540 cctaactcaa tgcctaaata ctctagctca cttggctatg gactgtacgg cgtttgggaa 600 aacttatcag ttcaaaacaa tgacccaatg ccttctagta attgctgaag agcatgcaac 660 aagttttagc aaacccaagt gatgctaaaa attgaaaaac accttgacag aaaagctaat 720 actgtaaaac aatcaaaaca gattattata tcgttttgtt cataaatcca ggctgttgtg 780 ttgttttaaa aactgaccaa ataggacggg gaggaaatgg ataagcaaaa aaaaaataat 840 aaaaatccct accaatcatg actctggatg aaaaaaatag agactaatat attgccaaat 900 tctctaacaa ttagcctacc ttacgtttat tggtattttt agcgaagaaa aactcagcgc 960 gatgcgataa gctgccgcca tctttgtgtt tgtttcaaaa tgacagaaac aagagggagt 1020 agcaggggta agaccacggg cgcaaggaat tcaacattcc caaataaaat ttaagattgt 1080 gccagctatt caaatctcga taacaaaaaa aacgcctaaa ggtaaacttc tcttgctatt 1140 tttaaaaatt tctagcttag ctgcaatcag cgacaaaact gttgaaaatt ttaacgcctc 1200 aaatgcagtt tcagatggaa atctaaatta cgtagcatag tgactttgat atcctcccct 1260 ccccatccca accccctctc ccccaaatca atgttggatt cttttactga caaccctaga 1320 cagcaacttt gaatgggggg aagggggatg tgagtaataa aaagttccca tattgtaaat 1380 tatttcagta agactacttt ttagatgtca ttttcaacag gttttgtcgc tgattgtggc 1440 tgcatgtata ccatgtagcg ttggaacaac actgaagcaa ctgtatatca ctgtcgcagc 1500 atttcctttc tattagaaac ttctag 1526 // ID Harbinger-N11_NV repbase; DNA; NEM; 242 BP. XX AC . XX DT 31-MAY-2007 (Rel. 12.05, Created) DT 31-MAY-2007 (Rel. 12.05, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; NVREP144; Harbinger-N11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-242 RA Kapitonov V.V. and Jurka J.; RT "Harbinger transposons in the starlet sea anemone genome."; RL Repbase Reports 7(5), 170-170 (2007). XX DR [1] (Consensus) XX CC Harbinger-N11_NV is a consensus sequence of a family of CC non-autonomous Harbinger transposons. The Harbinger-N11_NV CC transposon is characterized by 40-bp TIRs and TWA target site CC duplications. XX SQ Sequence 242 BP; 82 A; 45 C; 36 G; 79 T; 0 other; agccccatct acactaacaa tttttagttg acaattttta gttgacaact atatttgttg 60 gcatctacac tagcaatttt tcatgtgtga caatttttaa ttgccgagaa aaagcaaacc 120 tgctagcttt tgagcaacta tagttgccac ataaaaattg ccgactttgc tccatctaca 180 ctagcaaata aaaattgtca cataaaaatt gtcaactaaa aattgttagt gtagatgggg 240 ct 242 // ID DNA-9-13_NV repbase; DNA; NEM; 187 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-9-13_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-9-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-187 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-187 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-187 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-13_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 187 BP; 43 A; 52 C; 50 G; 42 T; 0 other; gtagcctgct agccggctct cattgtgggt tattcggaaa tgttttattt tcgaatattg 60 ggaaccctgt gcgcgcgcga aggccgcggc ccagcgcacc tcggccttcg cgcgcgcaca 120 gggttcccaa tattcgaaaa taaaacattt ccgaataacc cacaatgaga gccggctagc 180 aggctag 187 // ID TE-11_NV repbase; DNA; NEM; 2056 BP. XX AC . XX DT 11-MAR-2011 (Rel. 16.03, Created) DT 11-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-11_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP29; TE-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2056 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2056 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2056 RA Kapitonov V. and Jurka J.; RT "A family of TE-11_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (11-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 2056 BP; 672 A; 440 C; 358 G; 586 T; 0 other; accactggtg acaaccactg gtgacaacca ctcgtgacaa ccactcgtga caaccactgg 60 tgacaaccac tcgtgacaac cactggtgac aaccactcgt gacaaccact cgtgacaacc 120 actcgtgaca accactggtg acaaccactc gtgacaacca ctcgtgacaa ccactggtga 180 caaccactcg tgacaaccac tcgtgacaac cactcgtgac aaccactcgt gacaaaacca 240 ctggtgacaa ccactcgtga caaccactcg tgacaaccac tcgtgacaaa accactggtg 300 acaaccactc gtgacaacca ctcgtgacaa ccactcgtga caaaacctct cgtgtgacag 360 ctactatttg aagaccgttc gtgacaataa ttttcttcca ttacacatag gctttttctc 420 aatcgcttat tagatacaaa cgtacaattt aactcaatac tttagcacta taaaaaaata 480 gcgtaattat taatttgctt cattgtttaa caattataag tttgttgtcg gcatttatca 540 gcagcttaga tttttcgaag caggaaagaa atgtcatacc ataaacatga aaagtatttg 600 tgtaattaaa tccttagatc aaatccttat acgcaacttc gtgttcaatt ctatattctg 660 agaaacatga aagtaataat aagtttaatt caacctctcg aagtatagac tggattacag 720 gtgagtcaga gatacaagta agcactacaa caaagtacaa ttaatttaaa tgtaatcagc 780 atatttaaca gtaacgaact cgttgaaacg actcgtatta gtaggcctct gaacggattt 840 agacctgagg ttataccctg aatcatgtgt aatgcgacgc cctttaatga taggaaaaag 900 aggattctgt ggtttgattc tggaaacgaa ccgccggcat gcaatatttc ttcgctcgtg 960 caacgttgga aggtttgcaa gcgtgagtga accctcataa ctacgacctg ggaaagtaaa 1020 tgttcatttc atactatttc attccggtta cctaagtcac ttggtaacga ggtttgagac 1080 ctcgagggga aataaaaaat acttaaaaat agtaatgttt tttttttgta aactaaaact 1140 cgctgcgggt taaaactcca cgggtttctt tggtattctg tttagtatcg cggtgttatt 1200 tacatacatt tagggcgcct gtcagggaat gcggcgctta ttcattcata ctaagatatg 1260 gtgaggggtg ctagaaaatt tatttctaat gaggctgtca atacatacta cagtgtattg 1320 ccccaattac ggacggtttt tgcatttacc accataactt tatagcaata cttagaatag 1380 aacacttttg atattttgcc agtaacaaga ttagacgtta acctaataaa atacttataa 1440 tatatataca tatttttcaa gtttagggcg ccgtgctcga aaagtatgtg tcactgattt 1500 gccctaatcc cggtcttggt aagatctttc atccacgtta attacattga gatcgcttta 1560 ttttcctgga agaaattaac agaataccac tcgtgacaat tggctttaat tcgatagcaa 1620 ttgatccgaa tcaaaccaaa ctcatacaga tgaagggtct tagtaagatc tctcatccac 1680 gttaattaca ttgagatcgc accaatttct tttccaggaa gaaattaaca gaataccact 1740 cgtgacaatt ggctttaatt cgatagcaat tgatccgaat caaaccaaac tcatacagat 1800 gaagggtctt agtaagatct ctcatccacg ttaattacat tgagatcgca ccattccagg 1860 aagaaattaa cagaatacca ctcgtgacaa ttggctttaa ttcgatagca attgatccga 1920 atcaaaccaa actcatacag atgaagggtc ttagtaagat ctttcatcca cattaattac 1980 attgagatcg caccaatttc caggaagaaa ttaacagaat accactcgtg acaattggct 2040 ttaattcgat agcaat 2056 // ID Harbinger2-2_NV repbase; DNA; NEM; 4251 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 09-MAY-2011 (Rel. 16.05, Last updated, Version 2) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger2; Harbinger2-2_NV. XX NM Harbinger2-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4251 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1223-1223 (2010). XX DR [1] (Consensus) XX CC Harbinger2-2_NV belongs to a novel clade, Harbinger2, of CC Harbinger DNA transposons. This clade includes transposons CC present in protozoan (brown alga), fungi, choanoflagellate, and CC metazoans. CC Harbinger2-2_NV is a consensus sequence of a family of autonomous CC Harbinger transposons that were active in the Nematostella CC vectensis genome in a last few million years. The consensus CC sequences was derived from several copies of Harbinger2-2_NV that CC are ~97% identical to the consensus. The Harbinger2-2_NV CC transposon is characterized by 34-bp imperfect (5 mismatches) CC terminal inverted repeats, 3-bp target site duplications (TNA), CC and it encodes two proteins: (i) the 358-aa Harbinger2-2_NV1p CC transposase and (ii) the 129-aa Harbinger2-2_NV2p Myb-like CC DNA-binding protein. XX FH Key Location/Qualifiers FT CDS 156..1229 FT /product="Harbinger2-2_NV_1p" FT /note="Harbinger TPase." FT /translation="MSTFRDAREALLLANDLEVIDDDELLLLQNLNKSKNL FT DIPFEKYDRFDLESLTDDECLSEFRFIKNDLYRLNEALNFPDQITCPNRLT FT VDGMEALCMTLRRFAYPCRYEDLVPRFARAVPQISMVVNEAVSYIYTNYRY FT LLSSFNQAWLSPAHLEDYARLVALKGAALDNCWGFIDGTVRPICRPGLHQR FT TMYNGHKRVHAIKFQSVVAPNGLIANLFGPIEGKRHDSAMLHESGLLPLLE FT RHAINTAGQPLCLYGDPAYPLRAQLQCPFRGRNLQAQQELFNLSMSKVRTA FT VEWVFNDISTYFAFLDFKKDLKIGLSPVGKMYIVCALLRNANTCLYGSSTS FT QFFGLDPPDLEVYFT" FT CDS 3690..3304 FT /product="Harbinger2-2_NV_2p" FT /note="Myb-like DNA binding protein." FT /translation="MTNFFFYLQMAMKWNAIHDESMLMEVMVHEPWVHKFG FT STERGKVWEGVAEALNVIPQFSSNGCKLKGRSVRERYSLLEKKNTKKKMAE FT EMKASGIDTPELTNCERLLEELVERFAEAKLCVMEDFHNKE" XX SQ Sequence 4251 BP; 1245 A; 872 C; 828 G; 1306 T; 0 other; agagacctta cgcaacagaa aaatccacga cggcgacgtc aggttatgtc gcgcgggact 60 ggtacgagta cgtcagaaat gacgttgccg tcttggatgt aaacaacctt acgcaatcgt 120 tttgacaccg caaaagttac aatgctacga tcattatgtc cacttttcga gatgcacgag 180 aagctcttct actcgcgaat gatcttgaag taatagacga cgacgaactt cttctattac 240 agaacctgaa caagtcgaaa aatttggaca tccctttcga gaagtacgat agatttgatc 300 ttgaatcgct gacggacgac gagtgtttga gtgagtttcg cttcattaaa aatgatttat 360 atcgccttaa tgaagcgctt aacttcccgg accaaataac atgtccgaat cgtcttactg 420 tggatggaat ggaagccctg tgcatgactc ttagacgatt cgcatatccc tgtagatacg 480 aagaccttgt ccctcgattc gcccgagctg ttccgcaaat atctatggtc gtaaacgaag 540 cggtcagcta catttacacc aactacaggt acctcctatc aagtttcaac caagcttggc 600 tctccccggc acacctggaa gattatgcta ggctcgtggc attgaaggga gctgcactcg 660 ataactgctg ggggtttatc gatggaacgg tgagaccaat ttgcaggcct gggcttcacc 720 agaggaccat gtataatggc cacaagcggg tccacgcaat caaatttcag agcgttgtcg 780 cgcctaatgg tttgattgcc aaccttttcg gtcccattga aggtaaacga cacgacagtg 840 ccatgctaca tgagtcgggc ttgctgccgc tcttagaaag gcatgctatc aacacggctg 900 ggcagccact ctgcctttat ggggaccccg cctacccgtt gagggcccaa ctgcagtgcc 960 cattcagagg aagaaacctg caagcccaac aggagctatt taacctctcc atgagcaaag 1020 ttcgcactgc agttgaatgg gtttttaatg acatatcaac ttactttgca tttctggatt 1080 ttaagaaaga cttgaagata gggctgagcc cagttggaaa aatgtacatt gtttgtgcac 1140 ttttaagaaa cgccaacact tgcctatatg gctcctccac atcccagttt ttcggcctgg 1200 acccacctga tcttgaggtc tacttcacat gaaaataccc ctctgtaaca gacctggtga 1260 atgattccca ggcaggtttt ccgtaaaaag ctgggaattt ccaagttttt ttagatatag 1320 aggggggtct cccatgccat caggtcagag tgaaattgta tgagggaaaa ctctgccatg 1380 gagagtctga aaacttagca ggtaacgggg aggcaaaaag tccaccagga attttaaaag 1440 tccccagtct ggtttaacca ggtcagtagc atacctgtca actctccagc tctccaggtt 1500 ttaacgtgaa atcaccaggt ttttggcaaa aaattgcaga accaaaaaaa aaaaaaaaaa 1560 acaaggtcta cggaccaagt ctcaaggttt ctgatcacat ttgattgaca cgtatgaagt 1620 ggtagggggt gtatgaaagc aatttggcct gttagccaag ctatttttct tagtgtattt 1680 ttgtcatgga ggagttttta aataattatg gtttgcttaa aagttgagaa aaaagagaca 1740 tttgggtatt aattagttgt ttcactaatt taaacaaatc ccctattttt ttatttcaaa 1800 atgttgttca aatgatcatt ctagattagg gctatatgac tttcaaaaga tttctcatca 1860 caacttgttt attatgatag tcataaaaag accatgagtt atatgaccac tattcttagt 1920 aacattacct cacaatggta tcacctgttt ttaaaagttt tcagttttca ggtaatattg 1980 attgcaaaat aaaaagttta agccaactat aaatcataat agtgttgaaa tgtttcacat 2040 tcctttttat tttatttctt atttttatct ttgtcataac caaggcttga gtctttttga 2100 ctgactgcaa ataatcataa acacaaacga aacgtatttc ttcaatgtca gaaacattga 2160 gtgtaatccg cgtcccccca aaaatgacac agatggggat gggaaacatt tgttgttgtt 2220 tttatttggg tatgctagtg gagtatctgt taattatttg agcctagaac actttaaaaa 2280 aggacagtaa ttatacacag ctgctatgat tgcgattgtc ggttgtactg tgacggaaat 2340 ggataatatg ttaattgttc tttttcgggg ggcttttgga tatttatttt taaaatgttc 2400 ttgggatcca gactcaaaga attttggaaa atataaagag tgtaaacatt gcttttatta 2460 ttatctcctt attttttcta tacttcatgt atgagattta aagctttgag gtgaaaacac 2520 tgcatttgtc taataaatgt catctttatt ttaaaattgc tcaagtacaa aactcagcat 2580 ttaatgattt aatacatttt ctacatgcat gtttggatac aaaatgcaca tgaagttcat 2640 ttttgagtag attaattatc atggcaatta taatggtcaa gtgattcata cttcagtaaa 2700 tataagttaa ataataaaaa agatggaaaa gtctctgcaa ttaatctata attaaaagag 2760 catagacaga gacttgcggc cttgactatg gacaaggaac agtaaattca aggcttttca 2820 taattactct gaaattaaat gggcagaaaa gcattgaatt tactgctcct tgttcatttt 2880 ttctattagg gacatcaaga gctttgtttg tgcaatttgc atttgctgct gtaactgcat 2940 ctcttgctgt cgctgttgct gctccagctg ggattgctgt agctgttgct gccactgccg 3000 ttgttgctgt tgccattgct gctgttgcag ctcaaactgt tggcggcttt gttgctgaag 3060 gtgctgtagc attccttcct gctgttgcag ctcaaactgt tggcggcttt gttgctgaag 3120 gtgctgtagc attccttcct gctgtttgag agctgcagct gcctcttgct ttcttagttc 3180 aagctcttct tttttttaac tcaaactgtt cctacgcctg atagtaaaac atattttacc 3240 ataataggga gtgatctaaa actacattca actttaaaca caataccaca atcacaactt 3300 ttattcctta ttatgaaaat cttccatcac acacaacttt gcttcagcaa agcgctccac 3360 cagctcctct aacaaacgct cgcagtttgt tagctccggc gtatcaatcc cacttgcctt 3420 catctcttct gccatctttt tttttgtatt ttttttttca agaagactgt accgctctcg 3480 gacagaacgc cccttcagtt tgcagccatt tgatgagaat tgtgggatga cattaagtgc 3540 ctctgccaca ccctcccaca ccttcccccg ctctgttgat ccaaatttat gaacccatgg 3600 ctcatggacc ataacttcca tgagcatcga ttcgtcgtga atcgcattcc acttcattgc 3660 catctgtaaa tagaaaaaaa agtttgtcat ttgtcgtcct aaatgtgtta actaacttag 3720 acaagagttt ataatgctat cgctgaactg atgaaattat caaaaaaatc catgtttgca 3780 tttgtttgtg tgctacttcc tgaacgaaaa aaaccttgaa tatattccta ggaacaaatg 3840 cagaagagat atcgccttaa aactacattg gaggcgttca aacatatttc tctgcaatga 3900 tttgcttggc tatgttttga caagttgaca acaaaaatac gctacgataa aagcaaataa 3960 tttcgcaaaa ataaaaggga agcaagtcat ttcaactacc caattccatt cccatatact 4020 ttttgcataa ttcaaaagtt atctggcaga agaataacca atagataaag ttaaaagcaa 4080 taaaaagtac tcacgttttg gctgaaacgg caaaccccgg cgtttcacgt actcgacgac 4140 aacaagacgg caaaataaac cggaagacgc gtcacttttg gtctaaaaga tgacgtcacc 4200 acgtcacaca acgtcgtttg ccgtcgccgt tttgagttgc gtaaggtctc t 4251 // ID DNA-TTAA-2_NV repbase; DNA; NEM; 374 BP. XX AC . XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-2_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TTAA TSD; KW NVREP222; DNA-TTAA-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-374 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-374 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-374 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-2_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (03-MAR-2011). XX DR [3] (Consensus) XX CC Copies are 86-96% identical to the consensus. It was reported CC originally as the unclassified NVREP222 transposable element CC [1,2]. XX SQ Sequence 374 BP; 104 A; 85 C; 86 G; 99 T; 0 other; acaaggaccc gcactataaa agggcctgga ccaggtccac gaaaggctca gttgtcagta 60 aactgctacg cggtgcggag ctccggagtt cagtcaagcg tgtcttgttt gcccacgagg 120 agcgaaaccc aaactcaact tttgaagcgc ttttcttctc gtttgctcgg tttattttct 180 cttggctact aacaatgaat aacccaccaa aagagcagga atgtgcagta aaaattagtt 240 caaattatta acgataacac aactaaaaag tctcactacc gacgcaatgt tacggcgtgt 300 tgtcatcttg aagtttgaat tttattcagc cgaaaggggg cggagctaag cccttttata 360 gtgcgggtcc ttgt 374 // ID Gypsy-19-I_NV repbase; DNA; NEM; 4060 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-19_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19-I_NV; KW Gypsy-19-LTR_NV; Gypsy-19_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4060 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4060 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-19_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 467-467 (2007). XX DR [2] (Consensus) XX SQ Sequence 4060 BP; 1362 A; 775 C; 1042 G; 881 T; 0 other; actggcgacg agttagggga ttctttacga aaaacccgga gaaaggctaa agaaatatct 60 gaggaaaaag cagagggaga atccgagaga gatgaacctc gagcttggca gtatttcgac 120 cttcgactgc aagggaaacc cgaccagcat cggaccacga tggaaacgtt ggaaagcggc 180 ttttcaatac tatttggagg cgaaagatat cacgaaagaa tcgcagaaga aagcactgtt 240 actacactgt gcaggaatag acgtgcaaga gatatttaca acgctaaccg acccattaga 300 agaggcgcca accggagaca cgtgttataa acaagcgata agaatgctcg acagctactt 360 tagcccgcaa atcaacgtgc cttatgagag acattgtttc agacaaacga aacaagagga 420 aagcgaaacg gtagaccagt ttgtcacgag actgtcccaa atggcggaga attgtgattt 480 cggtgacaaa aaagcggaac acataagaga tcaactgatc gacaagtgca agtcacacaa 540 cctaaggaag aaactactcg aatccggggg agcactgacg ctgaaacgcg ctcaagagct 600 tgctagagca atggaagctg cagaaagtca agcgaaattc atagaaaaca gctttgagac 660 agcagggaaa gtaaattctt taagaggaag agaggaaaag gagaaaggaa aaggcaaaca 720 ctgctatcgc tgtggcatgg aaggacactt tagtaaagac ccagagtgca aagccagagg 780 ccggatgtgt aataaatgcg gcaaaattgg tcattttgcc aaagtttgca aaagcaaaga 840 gctaaaaagc aagaacttta aacaaaaaaa aggaactgta catcagctta ccgaagagag 900 tgacgagtat gcgtttgcag tcacggaagg acaagggtgc gtaaccattg atacggagct 960 gggaggtgta gaactaaagg gagtactggt ggactctgga tctacatgca atgttatcga 1020 cagaacgact tgggaagagt tgaagagtaa gaaaattaaa tgtaaatcat ggaaatccca 1080 gaagaaattg tatgcttatg ggacagaaga accactgaac actgctggag aatttgaagc 1140 aaaactgaca tataacaaca agtcatgttg tgctcgcttt gttgttattg aagagaaggc 1200 aagacctata ctgagtagac agaccagtga aattctagga gttctgcgga tacaagtgaa 1260 tacggttcaa gaggatgaac tatttgaaga gtacaaggag tgttttactg gagtggggaa 1320 attaaaagat ttccaagcta agatacatgt tgatgagact gtaagaccag ttgcacagaa 1380 agcacgaccc ataccctttg ggctaagagg caaggtaaac cagaagcttg aggagctcaa 1440 gaaccttgat atcattgagg aagtgtcagg gcctacacct tgggttagtc cagttgttat 1500 agtacccaag ccatcaggag aaataagact atgtgttgac atgagaatgg ctaatgaggc 1560 tgtggtacgg gaacggcacc cgatacccac tgtggatgag attctgtaca acttgaatgg 1620 gagtacaaca ttcagcaaac tagacctcaa gtggggcttc catcagattg agttggacga 1680 acagtctagg gttatcacca catttgtgac acacgaaggt ctcttcaggt acaagcggct 1740 catgtttggc atttcgtctg caccagaact ataccaacac attgtgcagc aagtattgtc 1800 aagctgcgaa ggagcctata atattcatga cgacataatc gtacatggtc gcactgtgga 1860 ggaacatgat gcaaggctac ggaagactct tgatctgcta aagaacaagg gtttgactct 1920 gaataaggag aagtgtgttt tcaggatgtc agaactgaca tttatgggct atctcttgtc 1980 tagcaagggg attggtccca cagaatccag ggtggaagca gtattgagtg ctaaagaacc 2040 gcagacagca ggagaggtac ggagtttcct agggctagtc aacttcagtg cacgctttat 2100 accagattta gctacaacag cagagccact gcggaggctg actaggaaag gagaggaatt 2160 tgtatggggt caagagcaac agaatgcatt tgacactctg aagagagatc taagcaaagc 2220 aaacactctt gcttactttg acaagaatgc agaatctacg agactagtaa cggacgcaag 2280 ccctgtaggc ttaggggcga tcctcacaca agtgcagaat gggtgtgagc gagtaatagc 2340 ttatgcaagt cgcagtctca ctgatgttga gaaacgttac tcccagaccg aaaaggaagc 2400 tttaggttta gtctggggat gtgaaagatt ccacatgtat ttgtatgggg tggaatttgt 2460 gctgctaaca gatcacaagc cactggaagt aatctactct acaaagtcca ggacttctgc 2520 acgcatagaa cgctgggtgt tgagattaca accctacaat ttcacagtca aacacatacc 2580 cggaaaggag aacattgcag actcactttc gaggcttacg ggagccaaag gagtgtgcat 2640 caacactgac gcggaggagt acatccgtca tgttgcggaa atggcagcac ctgtagctat 2700 accgatagag gagattgaga gggaatctgc ggtcgaccct gagattaaac aacttcggga 2760 ctgcatccta acagagaatt gggatggtgc tccaactcaa tacaaggctg tgagacagga 2820 actgtctacc cttggtaagc tagtactaag ggggactaga ttgttgatac ctaccaaact 2880 acggaaacaa gttctagagt tgggtcatga ggggcaccaa ggggtagtca aaacaaagca 2940 aagactaagg actaaagtgt ggtgggcagg gattgataga caggtggaac agaagtgtag 3000 agcctgtcat gggtgtcagc tggtaggggc atccacccca cccgaaccct tgcgacacac 3060 acagttcccc acccaaccct ggaaagacct ggcagctgac ttaatgggac cactaccttc 3120 tggagagtat ttgttggtag ttgtggacta ctacagcagg tattatgagg ttgatattct 3180 gagatctgta gtgtcaagta agatcataga aagcttagac aagattttct gtacccatgg 3240 tctccctgaa tcgcttaaaa cagacaacgg tcctcaattt gtgtcggaag aatttgaaac 3300 atacctaaaa gcaaatgaca ttcaacacag gacaagcaca ccattatggc cccaagctaa 3360 tggtgaggtt gagagacaga atcgtagtct attgaaagca cttaagatcg cacaagccga 3420 gaagaaggac atacaacagg aactcagaaa attcctgatt gcataccgaa caacacctca 3480 gagcacgact ggtgcaacac catccaaact gttattcaac agagaagtta gatgtaaaat 3540 tccagagata agagaattca gaacagagga cagtgaagtt agagatcggg atatggaact 3600 aaaacaaaag agaactgact atgcagatgc aaggcgaaac gcacaggaga acgatctaca 3660 gccaggtgac acggtacttt tgaaacaaag gaaggaaaac aaactgtcaa ctaacttcga 3720 ggacactcca tatgagattt ctagtaaaca cggaaatgaa gtaacagtca cttcatcaga 3780 aggagttagt tacaggagaa acgttacaga catcaagaaa tactttggaa caggtgatga 3840 ggctacacct agcgtggaga gctctgtgga cactaggccg actagagaga gaaagttacc 3900 ttcgcatctg aaagactatg aagtttatgt gtaaacttag tttattgcac atatagttac 3960 atttgagaac tgtttcattg agatttgttg tttcacactt agggactggt atagacctag 4020 tctacttgtg atgttagagt tagttcgaaa aagggaggag 4060 // ID DIRS-6_NV repbase; DNA; NEM; 4762 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-6_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4762 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4762 RA Kapitonov V.V. and Jurka J.; RT "DIRS-6_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 445-445 (2007). XX DR [2] (Consensus) XX SQ Sequence 4762 BP; 1295 A; 1015 C; 1030 G; 1422 T; 0 other; ttctctttca ccatattcca cattatgccc ttattatgcg tacttccttg cgcatgcgca 60 gattgccacg ttttaaagaa accattgtta tgcaaattaa catggtataa aaccccgcgt 120 acagcaagac catgcctctt cttctttcgt gcttgcgcac aaaggtaagc ccacgttggg 180 cttgatttgg gttttcttga aaccttgtct ttgtgaggtt caatttatag tcctctctgc 240 ttatacccca tttgtttctg ttttatacat tttttacagc gaatcttcag aattatgacc 300 aataagtcct cttcgagtgt tgatgaagaa atgaatgaag actctctgtt gagggatgac 360 accgctggtg ctgaacctca gcttttactc tcggcgcaga atatggccgc cttgagagat 420 aatctgggaa taaataccat tcagagcgcg gttgagaatt taacctcgct ggtatctggc 480 caagtttgta acaacaaacg agaagccagt cccaactcgc ggagcggagc tggttcagcc 540 cgcaaaaagt cccgcgatga aactgagggt tttgacccct ctactatcgc cctcgattct 600 cctagtggag atagcgataa tggcgacaaa ggcgattctg aagacgaaga atctttccta 660 cctccgtcga ttttcgacga aagtgaatca aagggtccgg aagtggcgaa gactcttgct 720 agtcgcgtga atgagtcgtt cacgtctaag ccgctcgaag gcaaattgaa gcctttaatg 780 gacaattata aatctcctgt caactgcgag atgttgtgtg ttcctagagt taactctatt 840 ctttggaacg aactgccaaa gcgagcgcat cagatcgact tagggctaca agaggcccaa 900 aaggcaatca tgaagacagc ccaagtactg gtttcagtta ctgatgatat gatcaatgcg 960 aagaaaaaca aagagtctct gaagcccgga tcttttattg gccctctgtc agatgctatc 1020 acatttgtgg gtcatgcgag ttatctcact tctcttaaga ggagagacct gctaaagcct 1080 gagcttagca aggattttca atcgctatgt tcggcttcaa cgccagtaac tactcagttg 1140 tttggcgacg acttatcaaa gtttgtcgat gagatttcaa aggcgaacaa agttgctaca 1200 aaaatatcgg caagctcgtc tgtttctcag cgccgccgat cgcgaggtgg ttatcgtaac 1260 aacaacaaca acaacaacag gcagaggaat tcgtcttttt taccgcgcca gaaccccaat 1320 tctgcgtggg gaaagacgca gggaaaccag aaccaagact cgtcgagacc atacaacagg 1380 agataccaag cgtcaaaagc ggcaatcaac cgcgacaaca agtaaacaat gtgagttcaa 1440 cttcacatag tatttcccct gttggtaatg tggctaacag ggttgatcag tggtctaaaa 1500 tcacctctga caagtgggtt cttgaaacca tacaaggata ccacctggag tttgagcgaa 1560 ctccttggca aaaatttatt cctggccgat tcaatttatc ggaatcagaa attctgctaa 1620 ttaatgcaga agtcgtaaag cttttggaaa aacgagctgt tgtccaggtg aaccaccgtg 1680 aggatgaatt cttgtcttcg atttttttgg tgcctaagaa aacgggtgat cttagaccag 1740 tcatcaatct gaagccttta aatgaatttg ttcagaacat tcatttcaaa atggaaaaca 1800 ttgatctttt ggagcattta ctgctccctg gggagtttat ggcttcgatt gatctgaagg 1860 atgcatattt tagcatccca atatgtgtac aagaccggaa atatttgcgg ttttgttggc 1920 atgacaaagt ttatgaattc acgtgcctcc ctttcgggta taaattagcg cctcgggtat 1980 ttactaaggt gcttaagcca gtttatgctt cgttacgttt ccgtcatatt agagtaatct 2040 attatattga tgacacttta gtgattggta aatcaagtga ggagtgtgca caacatgcgc 2100 gtgatgtttg ccaaaccctc tctaatcttg gctttaccgt gaacgaagct aaatctcaat 2160 tagttcctat gcaacaaatc aattttcttg gatttgctgt tgactctgtc tcaatgactt 2220 tgtcactccc aacccaaaag attgacacta taattaatgc ctgtcgtggc ctcttggaaa 2280 atccatctcc cagtattcgg gacgtggcac acgttacagg gttaatagtg tcagcttttc 2340 gggcggtgaa atatttaagg cttttttatc gttcagttga attatgtaaa tcacacctga 2400 tttctaatgg ttgtaattat gatgacaaga ctatactgtc tgagactgct cggtctgatt 2460 tattatggat tatacataac atccagcgat acaatgggct ttctattgtt acttctaatg 2520 tggattttac cactgaaagt gatgccagca tgttgggttg gggagcctgt tgtaatggcc 2580 aatcgacggg cggcctgtgg tctgaggtcg aatcgggaaa ccacatcaat tatctagaga 2640 ctttaggtgc gtttttcgca ctgaagtgtt tcgcacgtga cgtcacttgc aaacacattc 2700 aactaaagct tgataatacc acagctgtat cttatgtcaa caagatgggt ggcatacgat 2760 cttgcaatct agacaatctg gcaagggaaa tatggttatg gtgcattgat agacatattt 2820 ggatatcagc tgtccattta cccggacaaa gtaatacaat agctgactac aaatcacgaa 2880 atttcaatat aaatttggag tggagtttgc acccaaccgt ctttgactgg ttgtctcaga 2940 ccactttcat gccggatatc gatttatttg catctagatt aaatactaag gtcccaagat 3000 ttatttcctg gttgcctgat ccgtgcgcgt ttgcgtgcga tgctttctca ttagactgga 3060 gtaatttcaa accttatgca tttcctcctt tcagtctcat tccaagagtg ctgacccacc 3120 tacgggcaca tctcgtgcaa acgttgttac tagtaacgcc agtgtggccc tcccaggcat 3180 ggtacccagt agtattgaga atgtcaaccg aaagaccaat cttaatcccc aagtggccga 3240 accttctgaa gctgccccac acggatcagc tccacccctt gcgggaccaa ctccagctcg 3300 ccgcgtggac tctatcaggg catgtctcct tagccgagga ttttcttttg gcgcaaccaa 3360 gattatctgc gagtcatgga caaaggggac aggcaaacaa tacgatggtg cctggtctaa 3420 atgggagagc tggtgtcgtg aacggtcaca tgatcctttt caggcatctg tgagtacact 3480 gatcaatttt ttgacgtcta tgtgcgacga tggcaaagct tacagtacca taaacactta 3540 tcgctcagcg gtgtcaacta cgcttgaagc tgttacgggg atcaatattg gttcgcatcc 3600 tttagtaacc agatttatga aaggtgtttt tgtgaacaag cctcctaagc ctaaatactc 3660 ttctacatgg gacgtcagtc aactcacaat gtacttaaag actatagaac tatcagagtc 3720 tttatcgctc aaggaactga ctcttaagac agtttccctt atcgcgttag ttacagcgtg 3780 ccgttgtcag tctattaatt tactggactt aaatcatatg tctgtctcag atgatcagat 3840 agtttttgtt ataaatgagc gtgttaagac atcacgtcct gggaaggtgc agcccaggat 3900 tacgattcgt agttttccag acaatagccg tctgtgtccg tgcttgcatg taaagcatta 3960 tcttgacagg acaaagtcta ttaggtcctg tgacaagttg tttatttcgt attgtaaacc 4020 gtataagggt gttaccccta gcactattgc gagatggctc aaggctgtac ttaaatgtgc 4080 taacatagat acttctattt tcaaggccca tagttaccat agttaccgta gtgctgtaac 4140 atctaaggct tttttcaagg gtgcatcggt agctgatatc atgaaattgg ctgattggtc 4200 aagacagtgc acatttaata agtattacaa taagcctatt gcctcctctg acacgtcggt 4260 cagtatgcta gcgttgtcct agccctttac gcctattaaa taatgaggtg tatgtttttt 4320 ctgtgtgttt atttgacatc tctctttgaa atcgcataat aagggcataa tgtggagtat 4380 ggtgaaagag aattttaaat tagacaagag gtagacttac cttgaaggat aattgtaatt 4440 ctctgagcca tacggaacat tatgacctta ttaggtaccc acccttttca tttgcgccac 4500 taagtctagc tgtctgtggc ccacccttca ttcgatgtca actatggtgt atttttgttt 4560 acactcaaga agaagaggca tggtcttgct gtacgcgggg ttttatacca tgttaatttg 4620 cataacaatg gtttctttaa aacgtggcaa tctgcgcatg cgcaaggaag tacgcataat 4680 aaggtcataa tgttccgtat ggctcagaga attacaatta tccttcaagg taagtctacc 4740 tcttgtctaa tttaaaattt tt 4762 // ID Gypsy-77-I_NV repbase; DNA; NEM; 2228 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-77_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77-I_NV; KW Gypsy-77-LTR_NV; Gypsy-77_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2228 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2228 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-77_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 576-576 (2007). XX DR [2] (Consensus) XX SQ Sequence 2228 BP; 744 A; 562 C; 479 G; 443 T; 0 other; cttaaagcga aactcgacac gggagcgcaa gcgaatatct taccgataag gctatatcga 60 agcatgtatc cccagaacgt aggggatgac gggaaaccct aaccaggcgt gctaaagaaa 120 tctaaaagaa ctctaactgc ttatggcgga actacaatac cgcattttga aacttgcaag 180 ataaaatgcg cgcacggaga gaaagcaaca acggctacat ttatatcttc accgacgccc 240 aaagtaaagc aattatcggc ctcagccagg cgtgaactgg acgaagtggt ggagcaagac 300 atcatcacca aagttggaga aggagagcca accgcgtggg ttaatagctt agtctaccga 360 cggaagccca acggcaggct gaggatctgc ttagacccga aagacctaaa cgcggccaag 420 agagcaacac gtcacaccca ccctagagga aatccatcca aagctaagcg acgccaaaca 480 tttctctatt ctagatgcta aaagtggtta ctggaatgta gcgttagatg aaccatcaag 540 ttaccttacc actttcaact cgcctttggg aaggtatcgt ttcaagcgca tgcctatcag 600 attaagaatg tcacaagacg tattccaagc aaagatagac cacacattcg agggttgtga 660 cggtgtcgta gggattgccg atgacatagt ggttttcgga aagaccgccg aagaacacac 720 cgtaatctca aaggcatgat ctagagatac cagaagacgg ggctgaagct aaatccagat 780 aaatgctaca tcaaacagaa taagattaag tacttcgggt tagtattgga gaagatggtg 840 tcaaaccaga cctggcaaag gtgtcaacaa atgacgagcc ctaaagaccg ccgagaactt 900 caaaccttct taggtctagc cgcatacacg ggtcccttct tctcaaacct gagaactctt 960 actgacccac tccgagaaat gcttaaagaa gacaaaactt tcgattggac cgccgaccac 1020 caagcggcat tcaaccaaat caagcaatcc ataagtgaag aaatcacctt gaatcacttt 1080 gacagcatcg tcacactgaa gggacgcttc gatgaaaggc cgcactgata caaaccagta 1140 gcctttgcca gcatggctct gactgatgta gaaacacgat acgccaacat tgaaagagag 1200 ttactagccg ttgtctacgg ttgcgagcga ttccatacat acctatatgg acgtccattc 1260 actgtgcata gcgaccacaa accgttggaa agcatctacc tgaagcacct gacagcagca 1320 ccgccacgtc tccaaagaat gctactaaga ctccagccgt acgacatcac catcaaatac 1380 gtcccaggca aattaatggt gatagcagac gcattatccc gactatcccc ggaagagaaa 1440 tctccagtag acgaacgtcc gcatacacga agtatgcccg ctcgcaagga tcaaacaaac 1500 cacgagcgca gacgaagaac aacagcactc tagacagttg tccccagtcc cccaggtagt 1560 cagaccgtac tggtcttcca gggacgaaat atccaccgac gacggaatac ttatgaaggc 1620 ctcacagaat aataataccg ctgcccttca agaagatgtc ctaaacaaac tccatgtagc 1680 acatcaagac gctgaaaaaa ataaagctac gagcaagaac gtcagtattc tgagaaagat 1740 taatgcagac atcgcatcaa tcagcaaatt gtgcattgta tgtcaagagt tcaaggcgac 1800 gcaatgcaaa gagtcactga tacagacaga gataccacgg gcacacgatt gccacagacc 1860 tatttcacct agacgattca gaatacctac tcatctcagg ttactactcg aaatatcctt 1920 tcgtgaggaa gattccaaaa ggccaaagca acagcaacat catccaaata atgaagcaaa 1980 tctttagtga acacggagtg ccaacgattg tgaggtccga caacgggcca caatatatca 2040 gcaaggattt tcgaaaattc gcccaagaat acgggttcga gcacgtcacg agttcgccga 2100 tttacccgct tatcaatggc attataaaaa gtcaggtgaa gtctgtaaaa acagctctcg 2160 ccaaagcaaa gaagacacat accgacgcca acatggcttt actttgtctg cgcctatcga 2220 ttgcaaac 2228 // ID Mariner-N5_NV repbase; DNA; NEM; 436 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-N5_NV non-autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; KW mariner; Mariner-N5_NV; non-autonomous. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-436 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-436 RA Kapitonov V.V. and Jurka J.; RT "Mariner-N5_NV - a family of non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 621-621 (2007). XX DR [2] (Consensus) XX SQ Sequence 436 BP; 169 A; 71 C; 65 G; 131 T; 0 other; cagtaaaaac ccgcgtgtaa gaacctagtg atttaagaac ctataggcag aaattttgga 60 ttttaatacc ccaaaatata agaacctact aagccaaaaa attcaaaagg ttcttatatg 120 atgggttact ccattgaaaa tgaaacaaat tatggggctt taaaatataa atttgctaaa 180 cattttgctg ttccattaag ataagattac agatacaaca tacatacagt aggatatctc 240 tatagcaaaa tggctatgta ttcagtcaca cttctgtaat tatgaatcct actgttgatt 300 aagcaacttg gaaaaaaaat taagaaccta ataagaacct attttgcctt aattgttagt 360 aagtacccca aaatataaga acctgttttg ccaaacttga aaaaaaaact aggttcttac 420 acgcgggttt ttactg 436 // ID Gypsy-57-LTR_NV repbase; DNA; NEM; 151 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-57_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57-I_NV; KW Gypsy-57-LTR_NV; Gypsy-57_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-151 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-151 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-57_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 550-550 (2007). XX DR [2] (Consensus) XX SQ Sequence 151 BP; 35 A; 23 C; 44 G; 49 T; 0 other; tgttatgtat tgttcattga ttgatgttac catggagata gcgtgcttgc ccggagagag 60 cgcgccgaat ttgtagagct cggttgttga aagtaaaagc tcagtgttgt gtttagagta 120 gcgctcagaa ttgtgtcttc aggacttgac a 151 // ID DIRS-1_NV repbase; DNA; NEM; 4889 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone DIRS-1_NV autonomous LTR Retrotransposon - DE consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4889 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4889 RA Kapitonov V.V. and Jurka J.; RT "DIRS-1_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 414-414 (2007). XX DR [2] (Consensus) XX SQ Sequence 4889 BP; 1565 A; 989 C; 1048 G; 1285 T; 2 other; cattagatat accaaattta aattcaagat aattgtctga ctgccatgtg aaccgtacat 60 cttcgccaac gtatttgtcc acgggaataa gatcagcagc ggcgaaaact gtgaaaacag 120 tcgaattctt taatattaca acaggtataa tagtccagta attttaagat caaattttta 180 gagattttaa gctcaacttg cgacaatttg cagcagaaac atctcaatgg tgttagaagg 240 aggaactcgt ctgaaagtat acaaaatcgg caaaatctag attctattct gtcaccgcac 300 tgagggacca cgtgagatag cattgcgcct gcgcgaactt cattgtattg ccgcctttct 360 gcgaacaaca agttctattt cgcggtgata attcgctgcg aaatatgtcg tcaaatgaaa 420 ggaacgaacc gtgtaagaac agtgaattga ccaaggaagt ctaagagaaa gcgagaggac 480 ggaaatcgtc cccgttccac cgaagacccc gagaagattg tcacattgct gaggagaatg 540 gcgccaaaat tggcgaacct acccaagcct cgatagatgt gcaactaatg ttggacgcta 600 tgaggcaagg atttgagagt atcagtaaaa ctctcgccag ctcatccagt gacacggcta 660 atgccatatc agaagcgttt gattcgctta aaggagagct tgaggtcggt tatgaagacg 720 agagcgacca cggaacagaa aaccacgagg gcgaaaaccc ccctcgaaga agcgctgcac 780 gcatgatgag tcatcacagg caggaaaatc ccctgatttt gactcacttc tcgaaaagaa 840 aactccagcc tctaatgagg gagagcgtga tgtgctcaag gagctaaaac aagacctcca 900 aaaggaggaa ataagtccta atattaacag cgagctcgcg gagattataa actcgttgct 960 gaaagacggg atgcctgaag aaacgctcca gcggaaaatg aataaatacc accgcccagg 1020 aaattgtgaa aaactcacta aagtcaaagt aaatcaggca gtctgggata atctgagtac 1080 gggagtacgc tcgcaggatg tgaaattgca aaaagtgcaa acatctttgg tcaaaggcat 1140 gtgtgccttg tcacgtgcac ttagcaaagt gctygacaaa ttgtcactga ttccttcggg 1200 aaacgacata tttagagagg ccagtgatgc ctttgctctc attgctaatg cgaatatgga 1260 gctaaatcag agacgaaaag aactcataaa gcctgacttg aataatgagt atagacactt 1320 atgctcatcc tcttcaaatg tcactattac tgaccagctt ttcggagatg atctggccaa 1380 ggaagtcaaa gagttgactg aagtcaatcg tgtggggaag cgggttacca caacaaaccc 1440 aacagcttac cccagatctc gtgacaacag aaacttggga gctggaagct atggctccag 1500 gggacggatg tttcgtacaa ggaagtcttt tttagactcg cgaaactacg gcaaccaaca 1560 gccgtacaac acaaaccaga cacggaagtt caacaagcaa aagagaggga aatgactgaa 1620 acttctcttg atactacaaa acatgaggta agaaaatgtt cacttgcgtc taatgacaaa 1680 ataggtggac gactgaagca tttttcctcc gagtgggcag aaataaccaa tgacaagtac 1740 attcttgata gtgtacagca ttacaaaatt gaatttattg ctcacgagcc tgagcaacac 1800 tttgtaccta aggagatcaa tttcactgcc aatgaggaaa gctttgtaga ggaggaaatt 1860 tataaacttt tgagtaaagg agtccttata gaggccaatc actgcacagg agtgagatga 1920 atatatttct aatatattca tcagacctaa aaaagataac agctacaggc taattcttaa 1980 tctgaaaaat cttaacaagt atgtgcagta ccatcatttt aagatggata ctttacagtc 2040 ataaggctca tgaaaaagga ttgcttcatg gcatcaatgg acttgcgaga tgcttattac 2100 tcaataccta ttgacattga acaccagaaa tttctaagat tctcctagaa tggaaaactg 2160 cttcagttca cctgtttgcc aaatggactt tcttgtgggc ctagattatt cactaaggtg 2220 ttacaacctg tatatgctaa gctcagacaa caaggccacc taaatgtggg atacatagac 2280 gattcatatt tacaagggga cacaatagag gaatgcaata ataatattgc tgacttttgt 2340 gccctcttta ctaaattggg gtttattatt tacccaacta aatcagtgct gtttccaaag 2400 tcaatatgac tgtgagctta acacctgaaa agatgtccca cattaaagat aaatgtgcca 2460 gcctagtcag gaagggagaa acaatcatcc atgacctggc acaggtaatc ggcctgcttg 2520 tctcagcttt cccaggtgtt ctgcatgggc ccctatttta tagacacctt gaacatgaca 2580 aaaccattgc cctaaggata aacaagggca attattctgc aaaaatgaaa ctttctgagg 2640 aaagcgtatc agaacttcag tggtgggtca ataacattga caaagtaaat taccctattt 2700 gcacccctaa ctcggaaatt gacatcgctc tccataccga tgtctcaaag atgggatggg 2760 gggcagttag gggctcagag aaaacctggg gaagatggac aaagtttgag tctctaagtc 2820 acattaactg tttagaatta atggctatgt tttacggctt gaaagccaga tcagttcaca 2880 ttagagttta ctctgataac actaccactt taaattacat tgcatccatg ggagggtcac 2940 aatccattga atgcaattca atagcaacta aaatctggct attttgcata gagagggaga 3000 tatggttgtc tgcagcttat atccctggaa aagagaatgt ccaagcggac aaagaatcta 3060 gggtattcag tgataacaaa gagtggatga ttgcaccaca attatttaag caaattactg 3120 atacatgggg tgaaccaacc attgacttgt ttgcctcaag gttaaacaag caagtaacat 3180 gctatgcatc ttggaaacca gatccagatg caacctatgt aaatgctttt tcaatcagtt 3240 ggaatgataa attcttttat gcattccctc catttagttt gattgcacgc tgtctccaga 3300 aaatagcgat ggagaactca gaggggctgc tgatcgttcc aatgtggcca actcagccat 3360 ggtactcaca gctactccac atgttaacag atgttccaag gatgcttcca cgaaagccag 3420 acactctgag aatgccagcg agagaggaca ttgaacaccc actgatagga aagatgacat 3480 tgatgacttg cagagtatca ggagatccct tgagacacag ggaatttctc aacaagctac 3540 agagatcata ctacaatcat ggagacaggg aacccaaaaa cagtatgcat cgtacatcaa 3600 acggtggatt aagtatagtg ctgcaaggaa agttgattgc actgatccct ctatacctca 3660 agcattagat ttcctcgtcg agttatataa tcaaggtatt ggttatagcg gtatgaacac 3720 agcgaggtct gctctttcat gtatcttaaa gccagtgaat ggcatttcgt ttggatctca 3780 ccctacagtc agtcggtttc tgaaaggagt gtttcagtca aggccaacaa tatcgcggta 3840 cacagaawca tgggatgtcg gtacagtttt ggcctacctc aagacaatcc caagtacagc 3900 tgatgcttcg cttaaggact taagtttgaa aactgtaatg ctaatgtccc ttgtctcagc 3960 tcaaagaggg caaacgattc atatgctaaa tctcaaggac atgattaatg aagaaacagg 4020 gataacattt gttatgtctg tgcctatgaa acaaacaaaa ccagggtcga aatcagttac 4080 tgttcagttt aaaccatacc atgttgaccc tacactttgt gtggtaactg cattaagaga 4140 atatgtgtta cgtacagaaa cactacgagg tgaatgtaaa caactgttta ttagttactt 4200 gaagccgttt aaaccagtgt ctaggagcac aatcagtcgc tgggtcaaag ttgttatgaa 4260 gacagctggt attaatacag ataagtttaa gccacatagt actagagctg cgtctacatc 4320 taacgctaat atttcctctg tgcctgtaga ccagattatg tcagttgctg gttggagttc 4380 agctagcaca tttgcgaagt tttataacaa accatttgat gttaacaatg gatttgctga 4440 taccattttg gcagcagtta aggattaata aaccattctt gatgttcagg taaccatgtg 4500 tgcagtttgc tttgaagtct cacgtggtcc ctcagtgcgg tgacagaata gaattcaaaa 4560 attaaacgag acttacctgt aagttgaagt ttgattggaa ttctatctgt caccaagcac 4620 tgagggatta cgtgcccacc ctatactgtt tgttattttc tacccatccc tttgactgag 4680 ggattacgtg cccgccctat actgtttgtt attttctacc catccctttg agtaggtgat 4740 ttgggttaac ctgcacacat tgtaagtgct ttgaaaaatg aatttcgcgc aggcgcaatg 4800 ctatctcacg taatccctca gtgcttggtg acagatagaa ttccaatcaa acttcaactt 4860 acaggtaagt ctcgtttaat ttttgaatt 4889 // ID Polinton-4_NV repbase; DNA; NEM; 13070 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Polinton-4_NV autonomous DNA transposon - DE consensus. XX KW Polinton; DNA transposon; Transposable Element; Polinton-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-13070 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-13070 RA Kapitonov V.V. and Jurka J.; RT "Polinton-4_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 650-650 (2007). XX DR [2] (Consensus) XX SQ Sequence 13070 BP; 3946 A; 1976 C; 2249 G; 3167 T; 1732 other; aagagactca gcatcaaccc acgtgttaaa tgaatcagga taaccaagcc atttcactaa 60 atacttatta ccgcgttttc gtattatctt ttcaattctg aatatttctt gagtagtctt 120 ttgtagctct tgttcataaa atgtgccttg aatgtcttca ccattcacat cggttatctt 180 atatgtaata ggatctgtgt actggatcct agaaacagta aagatttctt ccgtccaccg 240 aggagtgtaa ccgtgttcaa atgttttctt ctttttagtt attctgactt tgtcaccaac 300 agaaaactta ggactagatc gttcaaacgt ttcaagcgaa gcaaactttc tatacagatt 360 cataaataca gcgctttcat ttttcttgtc acttgcagca acaggagtca tctttattga 420 agagtgttta gtattattgt atcgattaac catctcacct aaaacatcaa catatctcct 480 agtagaattt gctgaaaaat acttaaacat cttttctttc attgttctat tccacctctc 540 aaccatgcaa gatttttcct cattctctgt tgaatacaac tcgactccca atgctttaac 600 atctttattg taaaattcct ttcctttatc aacccacaat ttttcaggtt ttcttccttc 660 aacaaatatt ctcttaaaag ccaccgcaac agatttaccg cttttatctt ttaatggaac 720 tatccacccg tattttgaaa acaagtcaat aacacataac aaatatttta taccgtcgtt 780 gtattcagca aatgcttgca tgtcgaccaa gtcagcggcc caaatctcgt caattcctct 840 gacaataacc cttctctttc ggaaatgtct gattacaggt ttatgtaatt catctgcaag 900 ctgatctgac cattttagtg cctttggcgc ctgcaaagtt aagtctttag cctggctttt 960 tttgatcgct tggagttttt tgaacttggt agtccgagac caaaattagc tttagtactt 1020 aatattggct ttattacggc tctttcaaca cgctctctca aagttggatt aggaatttca 1080 ttcaattcac taaccataac tctgtcagct acattacgtg ttttggtatc ggggaaagca 1140 gcataagcca tgtcatgtcg ataagcagca tcatctactc gatctactgg cttactagat 1200 tctgtaggag ttccgtttgg atttaatctt agatctaatc ttgtaccagg acctgcaaag 1260 ttcataccag gcaaatgcat ttcaccagga tatttagccc agggtaactt aatattgctc 1320 gttatagaat tcaatgagct tactaaatct ccaccagatt ttttagaagg cataaactga 1380 gttttagtag taccacatac cgcacaagtc ccacgtagca tagatcttct attcttactt 1440 acaacattct gtaagttatt agtatctgtt ttattacgac actttacgca atacatttta 1500 tatataatat ttaaaaaatg gaagttaaag atctcagttg gaatgattct actaacaaac 1560 gattcaacaa tccactatta ccaagaagta taaggggttt gatagttgga aaatctgggt 1620 gcggtaagac tacactattg ttgaacctac tgcttaggcc tgggtggttg gatttcaaca 1680 atctgcaaat gtttggaaag tctttatttc agccagagta taaaatacta aagaaggcat 1740 ttgaagaaaa attacccaaa gaggcaatta tcagattatt cgatattcaa gatgaggtca 1800 tgaggcttaa tgttagtcct gcatgtgttg ttgaggagat gtcaaaaaat ttagctgaaa 1860 aagccgatat ggaatgtaag ttttttgaaa ctgcagaaga tgtgcctgat ccaagagacc 1920 ttaatccgca aaagaaaaat ctaatgatat tcgacgattt acagttagaa aaacaaaaca 1980 aatgtgaagc atactacatt cgaggaagac acagcaatgt agattgtttt taccttgcac 2040 aaaattactt caagctacca aggcagacta ttagggaaaa tgcaaacttt atctgtttat 2100 ttccgcaaga cttgaaaaat ataaaccata tatacaatga tcatgtttca acagacatgc 2160 ctaaagaaga gtttaaaaag ctatgcaaga cagtgtggga gcaacctcat gggttcgttg 2220 ttattgatct aacttcaaag aaatataatg gaaagtatcg ttgtgggttt gataactttt 2280 atatcccaca agatcaacaa agcttgcaag gcacatttag tgaaatgttg ccaaggtcta 2340 tttaaaaaat attaatataa aatggaacaa ctactcgaga aaattgcaag aaacacagag 2400 ccaaagaagt cgttttacat tttggttagc gacaaaagca cgcgtataag aaccaagttt 2460 aatccactac tccagctcga caaaagcaaa cagtatgaga tggcgttagt gaatctagag 2520 acatactact catttccaaa catagactca acaaataaca actttagata cagcccagac 2580 aacggagcaa catggtttaa catagacatc cccgaaggaa gttatgaaat tactgacatt 2640 aatgattatg ttcagcggat tatgaaggat aatggacatt atgattctgc aaacgatgaa 2700 tattatatca cgatcgaacc aaacaataac acgttgaaat cagtagtgga tatcagcgca 2760 aattacaaag tagactccac aacagcaaac tcaataagga ctgttttagg cttcaatagt 2820 caagtgtact ctgaagggta caatgaatca gagaatattg tgaatattct tagtgtcaac 2880 agcttgagag taaccagcga cgtgatagcg tcttcataca cgaacggggg aactgaaaat 2940 attatttact cattttttcc aagtgtagga cctggttaca agattgtgca agagccttta 3000 aatctaattt acctgcctat tacgttgggt actatttcac agatggaaac taaacttgtc 3060 gatcaaaatg gtaaattaat aaacttaaga ggtgaagagt tgtctattcg attgcatatt 3120 agagaagctt agtatataaa atatttttta cctaatataa aaatatgagt cgatacacaa 3180 atgttagagt gaacatttca caagggcaga ttgataaaat taaacgagcg attcaggcag 3240 cagttccagt tagcattaga ctatcacact cagatttgag tggagagcac gttctagcgc 3300 ttacagcagc tcaggttaat agaatagcaa aagcatatca aagcggaact ggagttacaa 3360 ttaaaatgag taaaacacag cttgagcaca atgctaaagt tgagggtggg tttattggtg 3420 cattattacc aatgttagca acagcgggta ggtttcttct atctagtgtt ctaccaacgc 3480 tagcaacagg agttttatct ggagttggtc aagcagcagg atctacggtt gttaataaaa 3540 ttgctggaaa cggaattgga ggtggaattg tatatctgaa aaagaatgga atgggctgta 3600 aaatacgagc ggcaggtgaa ggactatact tgtctccatg gcaaaaagga agttcacttg 3660 gggaaggaat gtatcttaaa agcggagctg ggtatgcagt agctggttcc ggactgctat 3720 tgggcccgaa ttcgccattt caaaatatcc caatattagg aatgattttg taactttaac 3780 aaacactttt ggttaagaaa taaattatac tatgtaaaaa gcacaaaatg tcacgatatg 3840 gtatgccagt acacaagttt attaataaat atcaaagaag ggaagaacca ccagtagtgt 3900 atagacctca cagtgatttg cagtatccag cgcaaccgag aaatggaaga tgggaaatat 3960 acgcacaaga agcgtttact attcaaccaa gatcatcttt tacagctatt cttaaatttg 4020 gggtaataat cagaagaggg atggtgttta tatcgctgaa acaggattta aaaataaaaa 4080 gatgcagtct acaagatggt gttgtgtctg aaactgttga cgatataata gctacaattc 4140 agaataattc agacacggct gtaacaatta atgcgggtga tagtttgtgt tttgttggta 4200 ctcaatcaat ttaaatattt tatctgctcg agtataaaat ggagtttaaa gaatctacag 4260 taaatacact gtatccgaaa ttagagcatt tagttgcatc gccgtcagca ccagacggtg 4320 agatacatat cgttgaagga actgcacaca cgtatcgcct gcaaaaaatt agcgcgattc 4380 aacgggagat tgagaatgaa agagataaga gggcaacttt gagtaaaaag tatcatcgag 4440 gggtaaaggt tatcaatgca gttgatgatg cactcgtggc tgctactatg ggtcttgggg 4500 ttgctggaat aggagtcctt tctacaatta ttgcagctcc aatcgctatt gctatggaag 4560 ctggcgcact agcagcagga ctgttgtcga tcgtttgtgg acaagttaat aaaaaacttg 4620 caatgaaagc agagaagcat gaaaagataa aaacactcgc tgatgcaaaa ctaaatacaa 4680 tcagcgatca tatttctaaa gcattaaaag acgacatggt gactgatgaa gagtattcgc 4740 tgattcttag tgagcttgaa aaagttaata gcatgaagga agagatcaga agcaagataa 4800 aaataggaat tgatgaacaa accaagcaat cactaatcaa tcaaggcaga gaagaaacaa 4860 tcaagtcatt tcaaaacatg tttggtaaat caagagagtc gtttcgtaag aagttaaaca 4920 tacatcatga gtaagacaac gaagtaacga aataagaaaa atctcctatc cacatctggt 4980 taggagattg ggttacgttt aggttttacg ttaaaagtta cgttttgatt tacgattagg 5040 atcacgtttg aacatgcgtt aatatctgtt tgttgaaact ttataataac atagtaaaaa 5100 gtatgtcttt tctaaagatc acagatccat caaaaagaga ctttctagtt gacgagtttc 5160 taaagtcaaa gagaaatatt caacaaaact caatgtctga gaaactaggt gatattagtc 5220 aacagtacga cctagcaaaa ctttacaagc ctatcaccga atcacaggcg ggacttgcag 5280 cacagctatc atcaataaaa gaagcaacaa aagatacgtc aacggcttta aaagcacttc 5340 cagcatcaat aacgtcatct ctaaaagcta taacatttcc tcaatatcct tcaattgagg 5400 tgtttgagga tccagtagaa tctaagcaga cattagagct tggagaccta gcaacaaagt 5460 acctacagca gtatgcatca aacaaaaagg ctgttgacac aacatttgga atttactcaa 5520 aagatggtca gttttacata ggtaattctc caataacgat tcgaggtgat gacgtaacag 5580 ttggagataa gacatataaa ggcactcctg gcctgtggga gttgctaaca atggctaaac 5640 ccaacaattc tatatataat gatactgata ttgaaagcta tgctcgcata ttagatgaaa 5700 ctaatgcaat aagaagcaca actaatccaa acaaaccaaa atcatcaaga agtgataagt 5760 acaaatatat aatcaaacca atatgggaca atttagctta tgttgatgcc actgcgcgac 5820 ttagtccagt taaaggtgaa ggagttagct ctgttattct accaagcaac ccaaatgtat 5880 tagtagaaat gctttcattg aggttagctg gttataaagc tggcaatacc ggtgctgcta 5940 acgaggctgt tgcaatttgc gatgaattat tgaggcaggg agcattaaac aaagactcat 6000 ataaggcaat tatgctacaa ctagctaggg aataaaaata ttatagtata aataaaatgt 6060 taatcgtcaa gaataaaaga tatgtaaaga aacacgttgt tggcggtgct ggaatttttg 6120 acacaatatc taactttgtc aagaaattaa tgtcatcaaa cacagcacgc tctatagcaa 6180 gtgccgcctc aaaagcagct gcgagtgata tcggaaaaag tgcaattggt gcagctaaaa 6240 ctgttggtaa agaacttgca acatcagcca tttcagccgc taaagacctg gctattgaaa 6300 agggtaaaca tcttattgat aggacttctg tcaaaatgtt gactcctaag aatgttgaag 6360 tgataaagca gattaccgga ttggaaccaa atactccagt cataacacaa aagagtaaag 6420 atatacttgc acgcttaatt aatagtggag cagcagaagc cacaaccaac ataaacaaac 6480 taatgatggg ccaaggggtg aaggctaatg caatcagaat agaagatctt gttcgaaaaa 6540 tgaatgtcgg ctcaggactt agattagcat aaaaaataat tctctgttta taaaaatata 6600 atggcaacgt cggaagtact aaactttaca gaatcaccaa ttgtagatga gggaattgaa 6660 agatatgaat tccacgaata cgaaccagta gcgcgaacaa acctaaatag cgctggtgaa 6720 attagaataa atgttgaaca gcaggatttg ttcacattac catctgaggc atatttgttg 6780 tttgaaggaa ggttaacaaa agcagacggt actgcttacg ccaacgcaga tgctgttgca 6840 ctcacaaaca atggtcttat gcatctattc agtcagattt cgtaccaact atcaaatcaa 6900 gatgtagaaa cagtattcca tccaggtcag gcaactacaa tgttggggat gttgaaatat 6960 ccgaatgatt ttcagctagc acaaggtttg aatcagctat ggtataaaga ttctgccgca 7020 actgctgtaa tagctgataa cacaggattt gctgttcgac aagcattcct tattcagaaa 7080 cctacagcaa agggaacgtt ttcattcatt gttcctctaa aacacatctt tggattctgt 7140 gacgactaca acaaaatagt ttatggattc aagcacacat taactcttgt gcgaaaagct 7200 gatgatgacg cgattttcag agcaaccgca gcaggtgcgg ggaaggttaa tgtcgacaag 7260 atttcgctat ttatgcctca tgtgatccca tcagacatgg aaaggatgca gatttacaag 7320 actattgaat ctaaggtaac tcttcctgta gcttaccggg cacgtcagtg cgacacgata 7380 accgttcctc agtcaacaac gttttcatgg cgactaagtg taaagacatc tccagaaaag 7440 ccaagatata taatcgtagg atttcagaca gataaggacg gaagtcagga agcaaatccg 7500 gctatattcg accattgtga cttgaagaac atgtatataa tgcttaatca agagagatat 7560 ccagctgttg attataattt gtcgtttcca aatcaacaat tctctagagc ctatcgtgat 7620 gctgcaacat ttagtgaaaa gttttatgga atgaatgatt tgatcacgca aagcaatatt 7680 acgccttctg attacaagga tctatttcca cttatggtat ttgacgtaag taagcaatct 7740 gagagattaa aatcgtctgt tgttgatgtc caaatcaagg ctacattcaa tgcagcagtc 7800 ccggcggaaa cagaggcttt tgctgttgta gtttcagaca gaatgctaca gttccaatct 7860 gatggacaaa agatgtctgt tgtgtactag gcatggctta ttaacttact gggcgcaaaa 7920 gtaatatttc tacatcacat ttggtgtaga aataaaaaaa gtgaaaacaa tttaaatttt 7980 ttcttgctaa tgtaaaatac agaaatgaaa tacacaaaga aagctctgat aaaactgttg 8040 caagatgctg atgtttcaac aactgcaaaa agcatcgcag agttgttgat aattgcactg 8100 gataatagag ttgtaaaacg ggaagacata ttatgcccag agaaagagaa accaaaggag 8160 aaacctgagg gaaaaaaact tcgtggtaga ccaaggaaga acccaccaaa agaagttgac 8220 ccaaacaagg ttgtagatcc gaagtatcat cgactacgaa cgatacgtgt aaatccaacg 8280 tcagtcaaat taactaacgt tgatactggt gaggttgaat cttatgattc tctatataaa 8340 gcatgcgcag caaccagaca tggttctggg ttctttatcc gaaataatgg aaaagtaatt 8400 gatggaataa tgattgcagt tgttgagtag ctcgttaatt tttctgacca aatttggtca 8460 gaaaaaaatt gaaaacgatt taaatttttt tctcggcata taaaaatgga atctcagacg 8520 gttaaacaat tgcgagaaat cgcaaaacaa cgtggcattc gaggctacta ttctatgaac 8580 aagacctcgt taattaatgc gttgtcggcc tcacaaccac ctccattggt aggatttgat 8640 gcttgggcag acgagcaatt agctaaacca gctaagcagg tgccatctgc atggagcgaa 8700 tggttgacta accatgcccc tataccttct ggcttcaatg aatgggcaga tgaacagtta 8760 gccaaaccta ttaaacgtgc aatatcaact acatacgatt ggattaaaaa taatgtgcct 8820 caaccagtga aaaaggtaat tgattctgga ttttatgcat ttaaaagcaa gatatctaaa 8880 atattcaaaa atactaaacc taattttgaa atcaaagaaa caaaatctgc gataaagggt 8940 gttacaaagc agtatacaat tgagggacat aatggggttg atccatcaac ttttctcaat 9000 gcagtcaagc aacaagttgt taatcttttg tcacgaaatc gtcaaacaaa ggttaatatt 9060 gtactaacat gtgtgatgga acgtgttgac ataaaatctg gggaagttgt agagacagaa 9120 gtaccatttg ccacaaaagc tgaggttgtc ttagaatcga cagacttaag tgaattatat 9180 acaagagcga cagacaaaat tttggaaaca atagcaactt ttcagatgcg aggaagcaat 9240 tggagattta aagctgttgt aaggatagac atcaacacgt ttgtgtacaa accactaaaa 9300 ggcagctcgt acataccgct tccaaaggaa ctgactgata agaaggcaat cattaacgta 9360 aaaaatgagg ataacgaatg cttcaagtgg tgtattacta gagcactaaa tccagtagat 9420 gaacacccag aacgagtcac aaaagaactt aagaaacaag ctgagaagtt taatttgagt 9480 ggtattacat tcccaatggc tcttaacgag attgacaagt ttgaaaggaa caacacagag 9540 ttaagtgtaa atgttttcgg ttatgaaaac aaatctatat atccacttcg aatttccaag 9600 catgaagagc gcgatcaaat tattgacttg ttgttaattt ctaatgaaac tacaaaccac 9660 tactgtttga ttaaaaacct tcgtggctta ttgagaacgc agaatggtga tcagcacatg 9720 cattattgta gaaggtgctt gaatagcttc agggatttaa aatctctcat taagcataag 9780 ctgtactgtg accagcacga tgttgttaga ccagatcttc cagaaccaga aacaatgttt 9840 accttcaaaa atcacaacaa atcaatgcga gtgccattca tcgtgtatgc agactttgag 9900 tcatttatta aacctattga tacatgtcaa ccagatccaa gcgcatcata caccaaacaa 9960 taccaaaagc acactccgag ctcgttctgc tactatatca aatgctttga tgatggtgtc 10020 tattctcatg atccagtcac gttcaccatt gagaaagata atgatgacgt tgcaggaact 10080 tttgttggca cacttgagtc acacataaag gaaatctatc agcagttcaa gtttcataaa 10140 cgcatgatat tcactgcggc tgacaagaag agatttgagg aagcagctgt gtgccacatc 10200 tgttgcagag atttgggcag cgatcgtgtt agagatcatt gtcacttaag tggcagattc 10260 agaggcgcag cacatgaaag ttgtaatcta aactataaaa taccaaagtt tattcctgta 10320 gtgtttcata acttatccgg gtatgacagt cacctgttca tcaaaaaatt ggctggaaag 10380 aatggagaga ggattaattg tattccaaat aacgaagaaa agtacattag cttctctagg 10440 gaggtaattg ttgatgagtt tacaaacaaa gaaggtaaac aagttcaagt gacacgagaa 10500 ttgcgattta ttgacagctt taggtttatg gcttcaagtc ttgatgcgct gacaaagaac 10560 ctaaccaagg aacnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10620 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10680 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10740 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10800 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10860 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10920 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10980 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11040 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11100 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11160 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11220 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11280 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11340 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11400 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11460 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11520 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11580 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11640 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11700 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11760 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11820 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 11940 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 12000 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 12060 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 12120 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 12180 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 12240 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 12300 nnnnncagtg tgtttgggaa gactatggag aacatcgaga atcgtgttga tgtaaggttg 12360 gtatgggatg agaaagaagc aatgaagcta gcagcaatgc caactatgag agcagaacaa 12420 tctttgatga gaaccttata gccattcaca tgaagaagac taagctggtt tacaacaaac 12480 cgatatatct aggaatgtgt attctcgaca ttagcaagac actgatgtat gattttcact 12540 acaactacat caagcaaaag tatggcgaaa aagcaaagct actgttcact gatactgata 12600 gtttatgtta tgaaataaag actgaagact tctatgctga tattagcact gatgttagaa 12660 atcgattcga tacaagtgag taccctacag atcaccagtc tggtatcgaa gtcggtgtta 12720 acaagaaggt tataggtatg tttaaggacg aagcttgtgg tatgcagatt gaagaatttg 12780 ttggtttgag agcaaagtta tattcttaca agatgtttga tggagatgag cacaagaagt 12840 gtaagggagt aaaaaagaat gtagttaaaa agtcaataac acatgacgat tacaaggatt 12900 gtttgtttac aaaacgtgaa cacttgcgaa gaatgaatgt gataaggtca catctgcacg 12960 agatgtacac cgaggaagtt aataaggtgg cactcagcgc taatgatgac aagcgagtga 13020 ttttggacga tggaatacat acatatgcgc acgggcatta tttgctaaga 13070 // ID Chapaev-1_NV repbase; DNA; NEM; 5015 BP. XX AC . XX DT 01-APR-2011 (Rel. 16.04, Created) DT 01-APR-2011 (Rel. 16.04, Last updated, Version 1) XX DE Chapaev-1_NV autonomous DNA transposon - consensus. XX KW Chapaev; DNA transposon; Transposable Element; autonomous; KW 4-bp TSD; NVREP462; Chapaev-1N1_NV; Chapaev-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1570 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1570 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-5015 RA Kapitonov V. and Jurka J.; RT "A family of Chapaev-1_NV autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (1-APR-2011). XX DR [3] (Consensus) XX CC Copies are ~98% identical to the consensus. It codes for the CC 975-aa Chapaev TPase (10 exons based on prediction by FGENESH and CC comparison with the Chapaev TPase sequences encoded by other CC transposons). The genome contains also a few copies of the CC non-autonomous Chapaev-1N1_NV transposon, which is a deletion CC derevative of Chapaev-1_NV (deletion of the 1571-4001 internal CC portion). XX FH Key Location/Qualifiers FT CDS join(494..1462,1533..1711,1897..2112,2197..2457, FT 2517..2593,2672..2877,2953..3179,3270..3552, FT 3640..3823,3908..4230) FT /product="Chapaev-1_NV_1p" FT /translation="MATAKAEAKHFEILKGLCRVCGKRLKKAKSLYAQSFA FT CGSFKTLLEGKFGINVEKDDPYIHPMRFCKLCRLATTDKAPIIWEIHREED FT CPTCALEEQIQKGGRPKKAKRGGARGQAKNSAWEETTNAGLKAQLIARVTE FT LSASMNTLRDHRFTERFDFFETKKEEFHCAICLDVLEKPLSSKCQHSCCSD FT CWKSAFELGEKHPACPICQETLADPNDLQRAPLVLIQLLEGYLVKCRACGT FT RLPYHLCNSHPCPPRKRQRANSPVPAAAVVLDPQTRTLEQMLNEVRTGLVS FT PDVARLGNLIVNTICKNSEDGITARLPGSGKPTVVMKIPQAQASSSVVSVR FT QKQRRTKALLQVGEVVSKGEMDLHTVEVLKRKNAEERKQLWFSNWGIQMES FT EKKQRAQKKEQVGDNLADEDFPMEHSRREGRKYITVIKQTPCAYVDDLKGH FT IIKYIDDNNSAGLLTWHGGNIPENSVFLKLGGDHGQGNMKFAFQLANVDKP FT NSSKKTVVFCVFEAKDTRNNLRAATQRYKEQLGDLESLQWRLDNLYDKKIK FT LFLFGDFEFLCKFLGISGASGRHPCLWCEIAAADMKLPPEERPPAPKRTLE FT SLRHNLREFREKGKSDLKRAKEYCNVIHEPLLDIPISQICIPGLHISLGLF FT VQFFELLLTECEELDIKIACNADTQAPDARVSSGSEFDKYVQQLREIKKLE FT EEAERLHQEAQHPGEHKECRGEGMLSYLLCCYGTLKCKTLLLFSFSHGNIM FT QIFGLSIKEEMAEELRSEASYRRDMGKIFQALEKQLQDLKIKRQPYHGACF FT VGNHTENIEKICSVVVNVVEEHSPALRGEAMAVKKKFHELFTLFGSVHFLY FT NSSAPMNTAQLRILENGIKEFAAFYRATFPDETFPPKFHMLEVHVVDFIRE FT WKFPLGFFGEQGGESIHHELNQLNREFSSIHPASRRLRKIIEEHSIRVAPL FT NRSKYPEKKNRKRRAHTATT" XX SQ Sequence 5015 BP; 1521 A; 1056 C; 1116 G; 1322 T; 0 other; cacgccactt tcaaacagcc ctagacgcga catttagttg gtaaccgcgc tttttgaatt 60 tgcgaccgcg ctttgaggta gttagttatt aactgacctg acaggatcgc gagtcacgaa 120 ggccgcagcc aagctaccga ataaaaccct tgttttaaaa gaagtgttga tagatatacg 180 tatcctattg cgacatttgg atacctaaaa tgcttacgtg attaaatttt acaaagaaac 240 gatcaaacac gcaattgagc aagaatgtat agcgtcactg taaacggtcc tattgagtga 300 tggcggaagc gcggcgaact acctacatga cttccgatta aaattttagt ctcgtggaag 360 ttttcctggt ttattgcgta gctaatccat aacgtatata taattgtctc ttagaatctg 420 tgttcatagt tttgggagat tgcgaatttt cgaagtagta gctcgtttta atatcgccca 480 tgagcgcaaa gaaatggcta ccgcgaaggc tgaagcaaaa cactttgaga ttttaaaagg 540 tctctgtcgt gtttgcggaa aacggttgaa gaaggcaaaa agcctctatg cccaaagctt 600 tgcctgcggc agtttcaaaa cattgctcga gggcaaattt ggcatcaatg tcgagaagga 660 tgacccctat attcatccga tgcgcttttg taagttgtgt cgtctcgcaa caactgacaa 720 ggctcccata atctgggaga ttcaccggga agaggactgc ccaacgtgcg ccttagaaga 780 gcaaattcaa aaaggcggta ggccgaaaaa agcaaagcga ggcggtgcga gagggcaggc 840 taaaaactcc gcttgggaag agacgacaaa cgcgggttta aaagcacaac taatcgcgcg 900 cgtcaccgag cttagtgcct ctatgaacac actaagggac caccgattca ccgagcgctt 960 tgactttttc gaaacgaaaa aagaagagtt tcattgcgct atttgcctag acgtcctcga 1020 aaagcctctg tcatcaaagt gccagcacag ttgctgctcg gactgctgga aatctgcgtt 1080 cgagttgggg gaaaaacatc cagcatgccc aatatgtcaa gagacgctgg cggaccctaa 1140 tgacctccag cgcgcaccgc ttgttttaat ccagctttta gaggggtacc tggttaaatg 1200 tagggcatgt ggtacccgat tgccttatca cctgtgcaac agccatccct gtcccccgag 1260 aaagcgccag cgtgcgaata gccccgtccc tgccgctgct gttgtgctag atcctcagac 1320 ccgaaccctc gagcagatgt taaacgaggt ccgcactggc ctcgtttccc ctgatgttgc 1380 gcgacttggg aatttgattg tgaacacaat ctgcaagaat tcggaggatg ggataacagc 1440 ccgattgcct ggatctggaa aggtattttg ttctaactat attttttatt cttttttgca 1500 atattataaa ttacattatt attctctttc agccaaccgt ggtcatgaaa atacctcagg 1560 cacaggcctc cagcagtgtt gtaagtgtaa ggcagaaaca aagacggact aaagcccttt 1620 tacaggtcgg agaagtagtc agcaaaggtg aaatggacct tcacacagtt gaggtcctca 1680 aaaggaaaaa tgccgaggag cgaaagcaac tgttaaagga tgctcttgga aaagaacttg 1740 ttttagaaat ccccaaaggg gagacttctt ggccatgaag gcggatcttg gtgttacatg 1800 gtacaagctc aacaaactaa gcaactaagg cggtaagagt cgtcactaag ctaaaaaagg 1860 ctttgtagaa tttcttatgt tttttttttt ttacagctgg ttttctaatt ggggcattca 1920 gatggaaagt gagaaaaagc agcgggcaca gaagaaggaa caagtgggag acaacttggc 1980 tgatgaagac ttcccaatgg agcactcaag gagagagggg agaaaatata tcactgtcat 2040 caaacagaca ccgtgtgcgt atgtggatga tctaaaggga cacatcataa aatacattga 2100 tgacaataac aggtgggtgt aataaaaagg agggtccgtc aacccccttc aactgtgtga 2160 tcatgcatag acttatccat tggtattctg ttttagtgct ggccttctaa catggcacgg 2220 tggcaacata ccagaaaact ctgtcttttt gaagctaggg ggtgaccatg ggcaaggcaa 2280 tatgaaattc gcctttcaat tagccaatgt ggataagcca aactctagca aaaagacagt 2340 agttttctgt gtgttcgagg caaaggacac caggaacaac ctgagagcag caacacaaag 2400 atacaaagaa cagcttggag acttggaatc attgcaatgg cggttagata atttgtagtg 2460 ataactgtag taatttcata ataatcataa ctcattactg tttgcttgct ttacagtgac 2520 aaaaagatca aattgtttct ctttggtgac tttgagtttc tctgcaagtt cctaggaata 2580 tctggtgcaa gtggtaataa taatttttaa atgttaaata ttatatatga aacaaacatt 2640 aattttccac cactcaattt tcatatgaca gggagacatc cttgcctatg gtgtgaaatt 2700 gccgctgccg atatgaagct ccccccagag gaacgcccac ctgcacccaa aaggacccta 2760 gagtccttga gacacaacct gagggaattc cgtgagaagg gcaaaagcga cttaaagagg 2820 gcaaaagaat actgtaatgt catccatgag cccttacttg atattccaat aagtcaggta 2880 aaagatttta gacttgtaat ctaggaatat tgacaaaaga aaagcaaatc ttttccttgt 2940 tctattttct agatctgcat cccaggcctt catatcagcc ttggtctatt tgttcagttt 3000 tttgagctgc tgctgactga gtgtgaggag cttgatatta aaattgcatg taatgctgat 3060 actcaggctc ctgatgctcg tgttagtagc ggctctgaat ttgacaagta tgtacagcaa 3120 ctgagggaga taaaaaaact tgaggaggaa gctgaacgtc tccatcaaga agcccagcag 3180 ttccaggatt tcctgacgta ccagctgtct gttgagaatg ctcggtctgg atgagaatgc 3240 cccacattta caaatggttg tctggcaagc ccaggagaac acaaagaatg cagaggagaa 3300 ggtatgttat cctatttgtt atgctgttat ggaacactaa aatgtaaaac actgttacta 3360 ttttcattct ctcatggaaa tataatgcaa atttttgggc tctcaatcaa ggaggaaatg 3420 gcagaagagc tgcggtcaga agctagctac cgccgggaca tgggaaagat cttccaagcc 3480 ctggagaaac agcttcagga ccttaaaatc aagcggcaac cctaccatgg agcttgcttt 3540 gtagggaacc atgtaaacat tgcgctgaag gtaaagtaca ttttgataca gcacagttat 3600 attttaagtg tactaatccg atttgctttt gattttcaga cagaaaatat cgaaaagatc 3660 tgtagtgtgg tggtaaatgt agtggaagag cacagcccag cattgcgtgg agaagcaatg 3720 gctgtcaaaa aaaagttcca tgaactcttc accttgtttg gctcagtcca ctttctatat 3780 aacagcagtg ctccaatgaa tacagctcag ctcagaattc taggtattat ttgagttcca 3840 caagctttgt aaagagagaa aaatataaat caacagtcta acaattctgt ttcttgtttc 3900 tccacagaaa atggcatcaa ggaattcgct gcattttacc gagccacatt tccagatgag 3960 acctttcccc ccaagttcca tatgttagaa gtgcatgtag tagatttcat ccgggaatgg 4020 aagtttcctt taggcttttt cggcgagcag ggtggtgaat caattcatca tgaactcaac 4080 cagttgaacc gtgaattcag ctcgatccac cctgcgtcgc gtcggctacg aaaaataata 4140 gaagagcata gcattagagt tgcacctcta aaccgctcaa aatatccaga gaaaaaaaat 4200 cgaaaacgaa gagctcacac cgctacaacc tgattaagcc gagtcagtct cgtttcttaa 4260 taatccgagt cgtgtatcaa ttgtaaaact attgcaaagc caggaggacg cgggagcgac 4320 aagtattact ccttcgatgt tcaaatcagt attaatattc tatcgaaaat aaacttaaac 4380 caactaaaaa aaagaactca atcttggttt tacttcaaat ttatctcaag tcaccttgaa 4440 actagattta tttttcatat tttgaatttg aatacgaatc aacattccct ttgtgctccc 4500 ttggtgtttt attaatggcg gcggaccgaa gaatttagcc cttatccgct ttgacgtagc 4560 actttataat cgcaatctcc caaaacactc accgtgccag gcgttcatac agccatccaa 4620 ctcgtagaat taggcaccct ctaccacggg aaaacttcca aaaatccaca aatcgaacta 4680 gagtacaagt agtacaacga tatctttaac ttctgcacga gttaggctcc caaaaatcaa 4740 actcgcgtag cgcgaatttg taaaggaatt gaagccatcc ttcgctctgt gtcggttccg 4800 ccatcttgtc tgcttggact ctgataaaat aagcactcta aacctcaaag aacacgggat 4860 ttcattggtt taaaaacaaa ggacgcgatc ggcttagctg taagacaaag acgacgcgag 4920 cgttgctaac tgatcgttgc tatgcaatgg gcaactccgc aggacactgt gatcgcaggc 4980 gtttttaact aaatgtcgcg ctcgacggcg gcgtg 5015 // ID BEL-1-LTR_NV repbase; DNA; NEM; 238 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the starlet sea anemone BEL-1-LTR_NV autonomous LTR DE retrotransposon - consensus. XX KW BEL; LTR Retrotransposon; Transposable Element; BEL-1_NV; KW BEL-1-I_NV; BEL-1-LTR_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-238 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-238 RA Kapitonov V.V. and Jurka J.; RT "BEL-1_NV - a family of autonomous LTR Retrotransposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 366-366 (2007). XX DR [2] (Consensus) XX CC This is a long terminal repeat of the BEL-1_NV LTR CC retrotransposon. XX SQ Sequence 238 BP; 83 A; 31 C; 61 G; 63 T; 0 other; tgaccggaac tgatttggtg ccattgtgtg acaaattgta aatagtcatt tgattccatg 60 attgtaatat gagagggggt gtgtgagagt agagagagaa cagcgcgtga agaacacgag 120 acaagacaag cgaggagaga gagataagtg aacacttttt atacttttac tacttgatta 180 cagaagaata aatatcaatc aaaacctgag attttagtgt ataggcaggt tccgtaca 238 // ID Gypsy-40-I_NV repbase; DNA; NEM; 4572 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-40_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40-I_NV; KW Gypsy-40-LTR_NV; Gypsy-40_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4572 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4572 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-40_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 513-513 (2007). XX DR [2] (Consensus) XX SQ Sequence 4572 BP; 1355 A; 940 C; 1233 G; 1044 T; 0 other; ttggtggcag ccaagatggg atcgaggact gttttgcccg acgctaagtt cacgtgtgga 60 cgagaagata ttagggaatt cctacgggat ttcgagattt atgtctcgct aaatgaatgg 120 caagacgaga aggcagggca gtatttagcc gtttatctga aagacgaagc gaaagctttc 180 taccatgagc aggaggattc agttagaaga agttaccggg ccttgtgtaa agcattgaag 240 gacagatttg aaggagggct agcaatacta aaatacaaaa aggaatttgc cgagcgaatt 300 agagctgaag gggagccgct ccactcgtat ttatctgctc tacgactcgc ttactcaagg 360 gctcatgtcc cacctgtagt tgaaacgcta ccagaagacc cgactgatgc acaaagggac 420 aggcactccc gacaggaagc agcttttgat tattataaca ccagagctaa ggaggacatt 480 ctgtgtcaat ttatcaacgg gctaaattcc aagctgaggg agatactggt ccgtcaggac 540 gatttgttaa aaaaacccca tagaagaagt aataaaaagg attgctaatc tggaagagga 600 gcaaagagca agtaacccac agcaagtacg gggtgctatt caagaggggg ttaatgacct 660 agttgacaaa cttgtcgaag agaaggtcac ggcagctatc agaaagggag gaaaaaacgc 720 tttccaaagg agaggtccaa ggcccacgga tttatgcaga aagtgcaaag gaaagggaca 780 ttgggctaga gactgcccat ccgtaacggg gaataattta aacgagaaca aggctggcgg 840 aacaccccga caccagcctt gagaacacaa aaggaggtca acacagtgca gacagggtgt 900 cgacgacact catacaaagt tgaggcaaag gtgaaccaag tgaagtgcac ctttttgatc 960 gacacaggcg cagaggtgag tctaataagc tcatcagtac caggccttat aataacagag 1020 tccaaagtgc atccagtttc aataacacgt gaacccattg gggtgagagg ggagtcccaa 1080 gtgacattgt tgctgggagg ccgggagatg tcatggaggt tcctggtggt ggatgacttg 1140 cagactcggt attgggggcc tattttattg atgcccacca tagggaatgg tggggattaa 1200 gggacaatag tctttttctt gatgaccagg aaatcccgct tgtctctagt aagtgcagat 1260 aagtatcggt tgaggatgat gctacacccc tgtagttgcc ttctgtacca ttgatcttcc 1320 agccaggcat caggcattta tacccttgcg gtgtaaagat aatgggaaca gagaggggat 1380 gtttgaagca accacaacac caggaggggt acttttgaca aaggcacttg tttcaggcaa 1440 gaagttctgg gtgaaggctg tttatctgtc ccaatcacca gtcaccctgt ataagaatca 1500 gaaagtgggt agtctgacta ccgtggatac agtttccgag ccccttagct ctaaggagac 1560 actggtagct ggggggaggt ttctgacaat gataaggtca taaacttgaa aaagcttggt 1620 attgacttgt cggacagtga actaggcacc aatgaaaggg agaaactaga aaatctgttg 1680 acctcgtatg ctgatgtgtt ttcgcaggga aaacgagaca taggaaaatg tagtgctaac 1740 gttcagcatc atattcattt gaagccaggt acaactccag tgaagcaaca gctgcgcaga 1800 ataccctttg catacaggga agaagtaaag acagacctaa aggctatgct ggaggacggt 1860 gttattgaga agtcatcatc agaatgggca agtccactag tcattgttcg aaaaccttcc 1920 ggggggctta gaatatgcgt agattacaga aagctcaacg aaggtacgcg ggttaccagc 1980 taccccttgc ccaacatcac cgagtcctta gaccgtctgg ccgacgcatc ttacttcaca 2040 acgatcgata tggtgtctgg gtatcaccag gttgaagttg cacccgagga cagagctaag 2100 acagctttta caaccccgtt tggattgtac cagtactgtc gcatgccctt tggcctggca 2160 ggggcacctg gaacgttcca atcagtagta gaggatatgt tgcaagtcct agatgcagat 2220 gatatgatgg cctacttaga cgacgtcatc tgtttccact ctagctttga agaacatcta 2280 agagggatag agaggatgct gcaagcagta agggcatctg gttttaagct gttgggtaag 2340 aagtgccagt ttgcaacaag atcagtgaag ttcctgggtc atgttattga ccagaacggt 2400 ggtgtcaggc ctcaaccaga gaagttagat atcatccgtc agtgggagac cccaaccaac 2460 gaagaagagc tgcggaagtt catcggtgtg tgtacattct ggagacgctt tgttaaaggc 2520 ttttcagagg ttgctgcccc acttcatgat ctgctcaata agcaggattt ctgctggtcc 2580 ccagaatgtg atcaggcgtt tgatgagctt gaaacagctg ttgtgtacgt cagtcacact 2640 gtctctacca tctcaacatg gacggttcgc agtgacgtgt gatgcctcta accgggccat 2700 cggatactat ctagagcaga cagacagaga gggagtgaag cgaccggtgg cgttcggagg 2760 aagaaagcta aacaaagctg aatgcaacta ctctaccaca gagaaagaat gccttgcggt 2820 tatccaggcc ctgaaagctt atcgcccata cctactaggc aaggagtttg atctctatac 2880 tgatcaccag tccctgaagt ggctcttgac taggacacaa gaacataatg gccggctatg 2940 gagatgggtg gataagttca gagagtttca gtgcaaggtg caccacattc ctggctcgaa 3000 gaacacggtt gcagatgcat tgagtagaat tcagaatgta accactagtg atgttgcaga 3060 gtggtcgatg gagtacatag ttgaagctgt ggttattaca caagccaccg gctcaacagg 3120 acgtgcaagg aaaggagctc cgagcattct acaaggaaat gcctaaccta actctgggtg 3180 aggattgtgt gcttcgacac aaaagagaac agaatagagg tgttacccaa gtcgtgattc 3240 catctactct gacgaaaagg gtgttgcaaa tgctacatga tgatgcaggg caccttggaa 3300 gcactaagac gctttaaagg atccgagaca gattcttctg gccgtgtatg gcaacggacg 3360 tggaaaattg gtgtagaaat tgtctagtct gtcagcagag acgaaatccc gttccggaat 3420 acaaggctcc gttaagacca attgtgacat ctcggccaga agaattggtg acaatggatg 3480 tggttgaata taccaaaagc agccgcggag gtcagtactg tcttgtcatg gtcgatcatt 3540 tcacgaagtg gctgtttcct ttaagaaacc agaagtctga gaccattgcc aagagaataa 3600 cagatggctg gattccaaga cacggagcac ccgaacaact gcatagtgac cagggagcta 3660 atctgaacat cgaggagatt tgtcagtatt tggaggtgtt gaagacaagg acgaaaccat 3720 ttcatcctca gtcggatggt gcttcagaaa gaagtatacg aaccgttaac gcaatgttgg 3780 ccaaagtagt gagtgacgat caaaagaact gggatctcta cctgtttggc atacaacaca 3840 gcagttcaca gtagcactgg acatactcct agctacctgg agtttggacg agagttgcgc 3900 cttccaactg acttagttga caccgctttt atgccagaag tgcggctgga acatgcagag 3960 tttgcgttgc aactaaagag ccgtctccag aaagcttata aagtggctag ggacactctt 4020 caactgtctc atcagtctca gaagagctat tatgatcgct gggcaaaaga gaagatcttc 4080 aagaaaggtg atcaggtttt gtggtttgac aagaagacga gaagagggag gtgtatgaag 4140 ctgaaccgac cgtggagtgg accctggata gtggtaaaac ggctgaatga agttgtgtat 4200 cggataaagt attgtggtca gggtaaacat gttggactga agacacgtgt agtacaccac 4260 aatcagctta agccattctt ggggagtctt gacacatctg aagtccaggt ggcctcaaag 4320 ccacaggccc ataacgaaca tcagacccca ctgtcaaaca actctgaccg gaaccttaca 4380 gtgatagaag aagatgagtc ggttcaccgg gatgaagcag aggtgactga cgagccacag 4440 gaagatgatc cagagtatga tgaaccagct cctaggagac ctcagcgtgt tcgtcatccc 4500 ccgatttgga tgagagatta caacactgag ggataaaata tggggacata tttctagata 4560 ggaaggggac ag 4572 // ID hAT6-N4A_NV repbase; DNA; NEM; 190 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE A subfamily of non-autonomous hAT DNA transposons - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; KW NVREP301; hAT6-N4_NV; hAT6-N4A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-190 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-190 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1200-1200 (2007). XX DR [2] (Consensus) XX CC It is a subfamily of non-autonomous hAT hAT6-N4_NV DNA CC transposons that belong to the hAT6 group, characterized by 6-bp CC target site duplications. hAT6-N4A_NV contains 13-bp imperfect CC TIRs and shares common termini with the autonomous hAT6-2_NV. The CC hAT6-N4A_NV subfamily is old: genomic elements are ~8% divergent CC from the consensus sequence. XX SQ Sequence 190 BP; 43 A; 45 C; 34 G; 68 T; 0 other; catagctgtc aactcacccg cattaggcgg gtgtcacaag attttggacc tcatcacaag 60 cctaattttt gtgagaatgt tcatacattc tctgtattca cccgcattgg ctctcttggt 120 ttttttcaca tatttactgt atttcacccg atttcacaag atttctgtcc aagttgggtt 180 gacagctatg 190 // ID Gypsy-48-LTR_NV repbase; DNA; NEM; 150 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-48_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48-I_NV; KW Gypsy-48-LTR_NV; Gypsy-48_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-150 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-150 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-48_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 530-530 (2007). XX DR [2] (Consensus) XX SQ Sequence 150 BP; 26 A; 28 C; 37 G; 59 T; 0 other; tgatatgaca tttgttgttg ttgggcttcc tgtggcctga gcctgcgctt ggtcagcagt 60 ttgttagtta gactagcggc cattttgttt tcgctcgctt tattgtaagc actgttttat 120 gttgagtaaa gccttactat ggtcactaca 150 // ID Gypsy-16-LTR_NV repbase; DNA; NEM; 192 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-16_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16-I_NV; KW Gypsy-16-LTR_NV; Gypsy-16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-192 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-192 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-16_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 462-462 (2007). XX DR [2] (Consensus) XX SQ Sequence 192 BP; 44 A; 32 C; 41 G; 75 T; 0 other; tgtagtattt atgtatgtta agaaccttga acattacgtg ttgggctgcc tgtgttatgt 60 ttattgttgt acagcggttt taccccatag aatctctagg ggcagccatc ttgcttagtt 120 ttcggtttag ttttacaagc tgtagattta tgttgattaa agcctcagtt tagaggcata 180 ccttctacta ca 192 // ID Gypsy-35-I_NV repbase; DNA; NEM; 4118 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-35_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35-I_NV; KW Gypsy-35-LTR_NV; Gypsy-35_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4118 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4118 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-35_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 501-501 (2007). XX DR [2] (Consensus) XX SQ Sequence 4118 BP; 1242 A; 978 C; 1037 G; 861 T; 0 other; tggtggccgc ggttaactat ggcctcagga tatgtcttac cgccgccggc gccgctggag 60 atacacaata gcaatgctgc tgacaaatgg aagcgatttg tgctcgcttg gaaaaactac 120 tcgttggcga ctgggttgaa cgagaaagct gaagccgtac aagtagctac gttgctaaca 180 gttatcggtg aagaggcgag agaagtctac tcgacattta ccctgaccga aggagagaca 240 gacaagatag agcctgtcat aaagaaattc gccgagtact gtcaaccaag aaagaacgtg 300 ccgttcgaaa gattccgttt caaccagcga atgcaagagc ctggagagtc ctacgagcac 360 tatagaacag cgctgagaaa attggccgag tcctgcgagt ttgatacgat tacgccagac 420 gaaatacttc gagatcggtt gttatttgga atacatgaca cgaaggtcag agaaaggttg 480 ttacgcgagt ccaaattaac actagcgaaa acagatgaaa tttgccgagc ggctgagagt 540 atgcttgctc agatgaaaat agtcaaagat acatctgaga cagacgtcaa tgccgtgagt 600 aaattcgagt cgaagaaacc caacatcaaa aattatcggc gaaagcaacg aggtcaaggc 660 aaacaatgtg acaactgtgg ataccaacat atggcaaatc aggaatcgtg tcccgcacga 720 ggaaaggact gccggaagtg cggagcgaaa aatcactttg ccaatagatg caaacaggaa 780 gtcaaggcta ccgaagtcga agaaacagat atgtatcctg aggagacata tcaaacggag 840 gaagtattgg ccgtctggtt ggatgattcg cagctggtca catttcaatc agagtctgga 900 agtttcatcc gtttcccaac ctgatactgg tgcacaatgc aatgtgttgc cagtgcacat 960 atacaagcag gcgtgtaacg accacaagct agtaaaagtg aaacccgtgc aaacgtcctt 1020 agtggcgtat gggggatcaa agatcaaagt cgtcgggcat gtcaccatta gagtgtggag 1080 aaaccatgta tcgtgccagc tggattgtcg ccttgttgac agccatgaaa tccgcccgat 1140 tctggggcgt aaggcatgcc ttggcatgaa cattatacag tacaatgaca acgaccagtt 1200 tcacaaaccg cagacagatg gagcgacagt gttcaccgtt gaccccaaac caggagctgc 1260 actaacaaga gaagaaatat tggctaagtt cccagcagtg ttcagtgacg gggttggcaa 1320 acttgatgga gaatacacca tcagactaga cacaaacgct caaccagtac aacacgcacc 1380 acgtagagtt gcagtagccc taagacccca gctcaagaaa accttgaatg atctagtgga 1440 caaagagata atagcaccgg tgaccacacc cacctcgtgg atcagctcta tggtagtagt 1500 tcccaagaaa gatggaaaac tgcgaatatg cctagaccca aaggatctca acaaagccat 1560 ccagagggaa aactatcccc taccaaccat agaagaggtt gcaacacgat tacacggtgc 1620 caaggtgttc acgttgttgg atgtccgcaa cggtttctgg cacgtccagc tagaggaaga 1680 gtcgacctat ctaacaactt tccatacacc gtttggccga taccgatgga agagaatgcc 1740 tttcgggatc tcctcagcac cagaagtgtt tcaaagaaag atgcatgaat ttgccgaagg 1800 tctgactgga accgaagttg ttgctgatga tttcctggta gtgggctatg gcgagagcta 1860 cgaggaggca acggcggatc acgacaggaa cctcctggca ttcctaaacc gttgtgatca 1920 acgggacata cacctgaatc ccgacaagat gagacttagg aaatcagagt tactcttcat 1980 tggccacata gcaactgaca agggacttaa agtcgaccct gctaaagtgc gagcaattgt 2040 ggacatgccc tcaccgaccg acaagcttgg ggtacagcgt ctgttaggcc tagcccaata 2100 ccttgcaaag ttcctgcccc agctgtcaga catcacaaag ccgctgaggg atctcacaca 2160 gagcgacgtg cagttcatct gggatgatgc gcaacagtct gcgtttgaaa agctaaagga 2220 tgccgttaca gtcactccag tattgcggta ctacaaccta gacgaggaga ttacacttca 2280 gtgcgatgcg tcgcagagcg gattgggtgc cgcattacta cagaatggcc aaccagtagc 2340 ctacgcatca cgtgcactca cgcccgctga gacgcgttat gcacagattg agaaggagct 2400 gctcgcgatt gtttttgcgt gtgaccgttt ccatacgtac gtctacggcc gcgaagtcgt 2460 caacatcgag actgatcaca agcctttgga accaatcttc atcaaacctc tggcgactgc 2520 tccgaaacgc ctacaacgaa tgctgctgag tctgcagagt tacagtctca atgtgaagta 2580 caagaaaggc aaagatcttt acttggctga caccctaagc agagcttacc tacccgaagt 2640 caacgcctgg gagtgtacca gggagctgga ggagattgac catcgatcat ggatgccagt 2700 gagagaagag acttggcagc aactcaaaaa tgcagcagta gatgatgcgg tgcaacaaaa 2760 ccttcgagag gttataaaga gaggttggcc agagagcaaa acagacctgc cggagtgcgt 2820 gcatccttac tttgatattc gagacgagct aactgtccaa gaagaactca tctttaaagg 2880 ccaacagttg gtggttccta gagccctgag gaaggagctt atggaaaaga cacactcatc 2940 ccacatcggt atagaaggct gcataagacg agcaagagac acgtttttct ggccgcggat 3000 gactgtcgag ttgaaggagt acatcacaaa atgcgaagta tgtttgactc atcgcagtgg 3060 ccaacgaaag gagccaattc tccaacatga gtttgtcgct cgaccttggg gaaaggtctc 3120 agctgacctc tgtgagctcg acaaccgaac actgctagtg gtcagtgact acttcagcaa 3180 ctacatagaa gtggcccggc ttaacacagt gacgtcacga gcaataataa aggagctgaa 3240 ggcaatattt gccaggtttg gcatcccaga cacccttata accgacaatg gaccgcagtt 3300 cgcatcagcg gagttagtgt atttgccaga cctggatttc gaacacaaga cgtcacaaga 3360 tatgcccaag caaatgggaa agcggaaaat gctgtacaga cagtaaagag gctgtttaaa 3420 aaatgcaaga catccggggg gtcagaattc caagcacttc tcgactggcg gaatactccg 3480 actgctggaa tcggaactag cccggcccag cgccttttcg gacgtcgatg caaaacactt 3540 ctccctgtgg ctggttccct actacagcct agctacaaca ctgaagagga caccaggaag 3600 ttgataggta ccaagcaacg ccagaagttt tattacgata agcacagcaa gcccctggag 3660 cccatcgctg tcggcgaaac tgtgcgcatg aagctaccag gacaagacac gtggacgcct 3720 ggtacgtgtt taggtcaagc cggacctagg agctacaacg tcgagactga aggtaccacc 3780 taccgacgaa accgccgaca gttgatcagc actggagaaa caaacagcca agtacctgat 3840 gttctggaat caccagaacc cgatgatgct cagcagcaac ccagccaggt tgccatgcca 3900 ccagattctt cacaggctat aacaaggcct cggcgggagg tgaagcctcc tgcatggctc 3960 aaagactatg tgccaaaata acattgaaac tgttaggaca ctgaacatta gtaataatcc 4020 atcgtatgat tttagttgta aaatttcgat tttttaccct ttgattatta taatgttgtt 4080 ttaaccaacc gttagcgtta ctgttaaaag agggaaga 4118 // ID Mariner-7_NV repbase; DNA; NEM; 2150 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-7_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Tc1 group; TA TSDs; Mariner-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2150 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2150 RA Kapitonov V.V. and Jurka J.; RT "Mariner-7_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 616-616 (2007). XX DR [2] (Consensus) XX CC This transposon belongs to the Tc1 group of Mariner DNA CC transposons. It contains ~400-bp TIRs. XX FH Key Location/Qualifiers FT CDS 593..1651 FT /product="Mariner-7_NVp" FT /note="transposase." FT /translation="MPPRHRIPFEHREKLVRAFEDDAEDYLQVADTLGVNR FT CTARSIVARYIQHGRIRELPRGGPNNVRVDDKMRDCVREIINENCLLTLQQ FT INRQLRARLPAKPEVHDRTVARMLDGMLYRVKLARPLPADRNRPDVLQKRV FT EYANWFMAIGVVRHCIFIDECGYNIWTARNHGMARLGERACRQVCRQRGRN FT LTVTMAISPINGLIFHSAFVGGMNARRFADFFTQVRLNLDPDENFVLIYDG FT APAHRNAVNPGPNTEIKMLPPYSPFLNPVEQAISCSKAAIKADISRPQIQA FT EMNNRDEARNRGVPLGIYRTNLLMEALQRNINTITQPKCAEWYRFMQTYLP FT RCLNGEMIEG" XX SQ Sequence 2150 BP; 678 A; 411 C; 450 G; 611 T; 0 other; caccttttta tcaccgagaa atacgaagcc attttagcca aacttacaaa catttacgcc 60 gacgtactgt catttatgcg aaagtaaaat catttgaatt aaaaggaaat acattaacga 120 ttcttacata atcgagtgca cacaattgca ttttcatcac attcatttac actttttgac 180 aatcaggaac gaaaaatctg ttttcatttt cgcgttaaag cataacaata acactaacaa 240 aatatcaata gtaagagagc tcgcaatcaa tacagtgaac ggaattttca ttagcatttt 300 tattagaaag agggcaaaca atagtatttt tagaaggtca tttgcgtgat ttctacattc 360 ataagcgcct ccgtactaac atgacatact ttcatgacat acaattaccc ttaatatatt 420 ttcaatcaaa aatgtatttt atcgccggaa ttttcacgta gtttacttgg ataacttaaa 480 catttttaaa ggcaaggtaa tgtatgtatt ttctcgatca aatcatttaa atagatgaac 540 ctttcacaag atcattttgg tcgatagctt ttgatctgaa cactgtacca ctatgcctcc 600 cagacacaga attccattcg aacatagaga aaagctggta agagcgtttg aagatgacgc 660 agaagattat cttcaagtgg ctgacacact gggtgttaac cgctgtacag ctagaagcat 720 tgtggcgcga tacatccagc atgggcgcat aagggagctg ccaagaggcg gaccgaataa 780 cgtgcgcgta gacgacaaga tgcgtgactg tgttagagaa atcatcaacg agaactgcct 840 tctcacccta cagcaaatca accgacagct cagggcacgt ctccctgcta aacctgaggt 900 ccatgaccgg acagtggcga ggatgctgga cgggatgctt taccgggtta agctcgccag 960 accactaccc gcggacagaa acagaccaga tgttctgcaa aaaagggtgg agtacgccaa 1020 ctggttcatg gccattggcg ttgtaagaca ttgtatcttt atagacgaat gtgggtacaa 1080 tatttggact gccagaaacc acggaatggc aaggctagga gaaagagcat gccgacaggt 1140 gtgtaggcag cgtggccgaa atctaactgt cacgatggca atatccccga ttaatgggct 1200 gatattccat tcagcattcg ttggtggtat gaatgctaga cgatttgcgg atttttttac 1260 gcaagtgcgg ctaaatcttg atcctgacga gaacttcgtg ttaatttatg atggggcacc 1320 agcgcaccgc aacgccgtta acccgggccc aaatacagaa ataaagatgt tgccgcccta 1380 cagtccgttt ctaaaccctg tagagcaggc aataagttgt tcgaaagcag cgataaaggc 1440 agacatttca cggcctcaaa tacaggcaga aatgaacaac agggatgaag caaggaacag 1500 aggagtacca ttgggtattt atcgcacaaa tttgttgatg gaagcgcttc agcgaaacat 1560 caacaccatc acacagccaa aatgtgccga atggtatagg ttcatgcaaa cctatctacc 1620 acgctgcctc aacggcgaaa tgatcgaggg gtaatttgag tgctagcatc aattattttg 1680 catgtctgtg cattattagg gcacaaataa acgataagta gttgaatttt tattttagga 1740 tattgtttgt cataaagggc ttattgtttg tacggaggcg ctaacgattg taaaaagcac 1800 acaaatgact tttaaaaaat actattgttt gcacttgctg taataaaaat gttcatgaat 1860 atttcgttca ctgtattgat tgcgagttct cgtattattg atattttgtt tgtgctattg 1920 ttatgcatca acgcgcaaat gaaaatagtt tttttattcc tgattgtcaa atagtgtaaa 1980 tgaatgttaa gaaaatgcaa ttgtgtgcac ttaattatgt gaagttcgtt aatgtatttc 2040 cttttagttc taatgatttt actttcgcat aaatgacagt acgtcgtcgt aaatgtttgt 2100 aagtttggct aaaatgactg cgtatttctc ggtaataaaa acaaaaggtg 2150 // ID Harbinger-N25_NV repbase; DNA; NEM; 624 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Harbinger-N25_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TwA TSD; KW NVREP545; Harbinger-N25_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-624 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-624 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-624 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N25_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 88-95% identical to the consensus. It was reported CC originally as the unclassified NVREP545 DNA transposon [1,2]. XX SQ Sequence 624 BP; 165 A; 146 C; 147 G; 166 T; 0 other; aggccgattt agacgctacg atttttgcct acaaccatcg catgcgacac gctcgcgtca 60 gcatacaact caagtcgcaa agtctaaatc agctctacaa ctccgctacg acacgagctt 120 acgacacgaa aaagttgtag gatttttgaa acatgtttca aaactctacg actttgtgcc 180 catatttggt aaaatgacgg aagcattgag gcgaatcttc ctttcagggg gagagacggg 240 gggcgatgac tgttttggtt tgcaaatatg gcggaaatcc atacgaagat atcgtcggca 300 atcgcgtgga tctttggcca aacgtagctc ctccaagatt aaacaatatg acccattctg 360 tcagccattc cttctctcgg acccttcttc gtctttttcc atttgtttac ggcgtaaaat 420 tgcagcagca agtgctgcag ctgcaacagt gcgacggtcc gccatgtttt ttgttgttgg 480 tcccagtcct cgacgagtaa aaagcgcaaa agtcgtacgc gattttcttg agacgtgagc 540 gaaaagtcgt gagtgtctaa atcagagcta agtcatgtcg catgcgatgg ttgtaggcaa 600 aaatcgtagc gtctaaatcg gcct 624 // ID DNA-X-3_NV repbase; DNA; NEM; 844 BP. XX AC . XX DT 22-FEB-2011 (Rel. 16.02, Created) DT 22-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-X-3_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP4; KW DNA-X-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-844 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-844 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-844 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC This is an old familiy of non-autonomous DNA transposons. CC Originally, it was reported as the unclassified NVREP4 DNA CC transposon [1,2]. Target-site duplications are not clearly CC established. Copies are <90% identical to their consensus CC sequence. This transposon forms complex structures: 69-bp TIRs, CC and TIR tends to form minisatellites. Even in the DNA-X-3_NV CC consensus, the 3' TIR forms a minisatellite composed a 77-bp unit CC tandemly repeated nine times. XX SQ Sequence 844 BP; 189 A; 225 C; 203 G; 227 T; 0 other; agtgcgacgc gcgctaccgt ggccaccaag acaaagtttt aagaaagtta gccaattagc 60 atgcgagaat cacgttttga ttgacgtcag atcggctgtt tcactagcgt ttttgccacg 120 ctgattgcgg gtggcacggt gcatgtcaat cagatagcac gtttctcgca tccttattgg 180 cttacttcac aaaactgtca aggtggccac ggtagcgcgc gtcgtatcag atagcacgtt 240 tctcgcatcc ttattggctt acttcacaaa actgtcaagg tggccacggt agcgcgcgtc 300 gtatcagata gcacgtttct cgcatcctta ttggcttact tcacaaaact gtcaaggtgg 360 ccacggtagc gcgcgtcgta tcagatagca cgtttctcgc atccttattg gcttacttca 420 caaaactgtc aaggtggcca cggtagcgcg cgtcgtatca gatagcacgt ttctcgcatc 480 cttattggct tacttcacaa aactgtcaag gtggccacgg tagcgcgcgt cgtatcagat 540 agcacgtttc tcgcatcctt attggcttac ttcacaaaac tgtcaaggtg gccacggtag 600 cgcgcgtcgt atcagatagc acgtttctcg catccttatt ggcttacttc acaaaactgt 660 caaggtggcc acggtagcgc gcgtcgtatc agatagcacg tttctcgcat ccttattggc 720 ttacttcaca aaactgtcaa ggtggccacg gtagcgcgcg tcgtatcaga tagcacgttt 780 ctcgcatcct tattggctta cttcacaaaa ctgtcaaggt ggccacggta gcgcgcgtcg 840 cact 844 // ID DNA-X-2_NV repbase; DNA; NEM; 477 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-X-2_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-X-2_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-477 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-477 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-477 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-2_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 477 BP; 152 A; 102 C; 97 G; 126 T; 0 other; ctacaatcat ggtaaaaatc attgggacat tgtcggaatt tgtccaaatt ttcaaaacaa 60 taatccatgc aagaacacaa aacccgtaaa ataatattta caacccccct tagaaccccc 120 cccccccccc ttcaatgttg cgtcaagtgt tttggcgttg gcatcatcca acattgaaga 180 ttgaagaggg gggggggaga cggagggggg ggggtaaatg gcgcgttcca taaagtatgt 240 gaaagcagca ctcaaggcct tataacttgg acgttaaaac tcttttcgtg aagtccataa 300 acgctaagct aatagtcaat agaattaact ttattataaa acagtcctga tttgcgttat 360 tttgacatta taggttctat aggagcattc aactcaaaac aaaaatagat tatgcgcgca 420 cgctttttta atcgcaccgg aaccctgtgt cccaatgcaa tgtgaccacg attgtag 477 // ID Kolobok-N20_NV repbase; DNA; NEM; 234 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Kolobok-N20_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW TTAA TSD; Kolobok-N20_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-234 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-234 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-234 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N20_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 90-97% identical to the consensus sequence. It was CC reported originally as the unclassified NVREP373 DNA transposon CC [1,2]. XX SQ Sequence 234 BP; 63 A; 58 C; 48 G; 65 T; 0 other; aggggcagtc gcaccggtag cggtattttt caagaatgct accgtcacca atccagcaca 60 gagaaaaact actggacact atctaaaagc tgtttgattg tcttcttgtg agtaaattcg 120 gcgcgatgca aacggatttc acatctacat actctttcag ccgtctattt cgctctcaag 180 aaatgacgat tccacggtgt attttcactt tgaaacgaac gtgcgactgc ccct 234 // ID DNA-5-21_NV repbase; DNA; NEM; 166 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-5-21_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 5-bp TSD; KW NVREP458; DNA-5-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-166 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-166 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-166 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-21_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~90% identical to the consensus (Transib or hAT5 CC superfamilies). XX SQ Sequence 166 BP; 30 A; 37 C; 44 G; 55 T; 0 other; cagggaccgc ggagagggag gggctggtag tgctatagcc ctaccacttt ttggcttggg 60 ttgatttttt tcagggctcc agatttttta gggctccaga tatatacttg tttgtcttgg 120 ccaaattttt agccctacca ctttaaaatg gtctccgcgg tccctg 166 // ID Harbinger-N28_NV repbase; DNA; NEM; 746 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE Harbinger-N28_NV non-autonomous DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TwA TSD; NVREP435; Harbinger-N28_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-746 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-746 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-746 RA Kapitonov V. and Jurka J.; RT "A family of Harbinger-N28_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 88-98% identical to the consensus. It was reported CC originally as the unclassified NVREP435 DNA transposon [1,2]. XX SQ Sequence 746 BP; 218 A; 183 C; 160 G; 185 T; 0 other; gggcccggtc gcactagcaa gatgttcagg acatctctgt ttagataagc tcaaaaactg 60 acagatgtcc gtgacatgtt acgaagccaa gtgcgaccta tgtttttacg caacacgaca 120 aattcgccgg tcgggacaaa acatcaaagg agccgatgtc ctgccccagg gcaggacatc 180 tacctgatat caggggaact ctgtttgttt ttattcttat cgcgcaaaga acgtcactca 240 cacaaaaaac gtaaatggtc tcaaatagca accttcgctt cgccttcaaa gctagaggtg 300 aatccctacc aaaatccctt atttccaaca atctggcggc gtgaggaacg gtcaattcta 360 agccaaacat gtacgtcttc gccttcggtg cataatagac aactacattt gcaattaact 420 gagtaacagt aacagctatg catccgacta acgcagcacg atgtataggt acatccaaac 480 gaaaagcagc agattttttt ctattcatga cttaatatgc agacgtgcag catgcagaga 540 gtatttgctc ttcgaatctc ccgcgcgcga aggaaacgca gatgaatgac atacgatgtt 600 atttttaggg ctcgtgatcc acggatgttg caaccagtgc gaccttaatt taagaatgtc 660 tgatagtgcg tagatgtcac gggacaaact tgtccaccta aatgtccctg acatctcctg 720 aacatcttgc tagtgcgacc gggccc 746 // ID Gypsy-21-I_NV repbase; DNA; NEM; 4309 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-21_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21-I_NV; KW Gypsy-21-LTR_NV; Gypsy-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4309 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4309 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-21_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 473-473 (2007). XX DR [2] (Consensus) XX SQ Sequence 4309 BP; 1548 A; 874 C; 918 G; 969 T; 0 other; tggtgtcaga caaaatcctg tgaaaccaca aggaaaaaga acccatcctc cctgaatcca 60 aacggtataa gccagagaaa agtgcaaaga aaacactgat gagaagatgg aaggaatttc 120 gaactcaaat acgcctagga tggattggac aagcaaagac ttgccaatgg catggacgtc 180 gtttaaacgt cacgcacagt ttatgtttgg tggtcctttg cagtcgaagt ccgaggaaca 240 gaaatgcaac tacctaatga tctgggtagg tgagaagggc cgtgatatat ttcagacgtg 300 gactctggaa gaaggagacg aaaaaaagct aaaaacttac tacgataagt acgaagcgta 360 tgtgaagccc aagtccaaca gaatcttctc cagatataaa ttccacacaa agacgcaaga 420 cgcaaatgag ccgtttgaac aattcttgac agatctcaag cttctagtca aagattgcgg 480 ctacgctgaa caagatgagc atgtgagaga cagaattgtg atcggatgca agtcttcgaa 540 gctgagagaa aaactcatcc aagagagatc ggacttgaca ctagaaaaag caattgacat 600 tgccatcaca atggagcaat ctcagataca gctcaaaaca atgaaagagg aagaccctag 660 tgtgttcaag atacagtcaa gatcaaagga acaatcgaaa aaatacaagg ggcaaaacaa 720 gacaccagca ccaatatgtg gaaagtgtgg atacaaacat ggcaaagata agtgccccgc 780 tacaggaaaa caatgtatta aatgttccaa aatgaatcac tttgcaaaaa tgtacaagtc 840 caaagtcact tcagtgaagt gtgttgacga tgacacaaca gacgagagta cagaagaaga 900 ggatgatgat gaattgttgt atatgggctg cattgacatt aactctgtta actccataaa 960 cagtgactgg aaagaagaac tggaaataaa tggaaagaaa gcaacatttt tattggacac 1020 tggagccaaa tgcaatgtta tgtcttataa tacctacaag tcacttggaa tgaaggatgt 1080 aatcaagagt acacaatcac agctcaagtg ttattctgga catgtgattc ccatacttgg 1140 atgtgctcaa cttacttgca aacacaagga taagtccctg aaaatcaagt gttacattgc 1200 aaagaacaag gtattctcag taatcagtgg acaggcatgc aaagacctca atcttattca 1260 tcgcatcaat catgtccatg catcgaagga gccgacagca acagatgacc catccaatac 1320 agagtcacaa acagatattt tacaggagta ctcagatcta tttaatggtc ttgggtgttt 1380 accaggagaa caccacatca acatagatcc aaatgctaca cctgtaatac acccccctcg 1440 acgtgtgcct atcacactaa aggaacaagt caaacaggaa ctggacagaa tggaagcact 1500 tggagtgatt gtcaagcaag aggaagcaac accctgggtc agcagtatgg tgacggtagt 1560 gaaaccaaac aaagtcagga tttgtttaga cccaagggac ttgaataatg ctatacgcag 1620 agagcattat cccatgaaaa caatcgagga cataatttct gaaataccaa acgcaaaggt 1680 attttcagta attgatgcgt cttcggggta ttggcagatc aagttggatg aggagagctc 1740 gaaactatgc acgtttaaca gccccttcgg tcggtatcgg tacctgcggt tacccttcgg 1800 tgtaaagtca gcgagcgaag tatttcagcg aagcatatca caaatgttgg aagggataca 1860 aggagccata ccgattgttg atgacatctt gatatgggga tctacgtgtg aagaacatga 1920 tgagcgacta cgcctaactc tagacagagc tagacagtac aaccttaagc tcaacaaagg 1980 gaaatgtcaa gtcaggcaaa agcaagtatc gtacgtgggg catgtcctaa gaaaagatgg 2040 actcaagcct gacccagaga aggtacgagc ggttgaggaa atgcagcctc ccaccaacct 2100 gaaggaactg agaacatttc tgggatttat tcaataccta ggaaagttcc tacccaactt 2160 gtcaaccgtt agtgcgccac tgagactcct cacggagaaa gatgtagaat ggcactggga 2220 gaaagcacaa aagaaaagct ttgacaaact aaaacatcta gtttctacca cgcctgtatt 2280 aggatattat gatcaacaga aaccggttac aatgcaagtg gacgcatgct ctcaaggact 2340 aggggcagta ctactacagg aaggaaagcc aattgcttat gcgtcaaggg ctctgacccc 2400 tactcaacag agatacgcgc agatagaaaa agaactcctc gttattgtct atggttgtca 2460 caaattccat caatacatat atggatgtac cgtaacagtt gaatcggatc acaaaccact 2520 ggaacgcata acaaccagga atttacacca ggtaccatta cgtttacaac gaatgatgat 2580 gagcttataa cgatatgact tgaatgttca ttacaaacct tgaaatcaga tgcagttggc 2640 agacacactt agtcgttcct acttgaaaga aaccgcagag acactcatcg aagaactaga 2700 agttaatgaa gttcatctaa cagcacatct tcccatgtca cgtgataaat acgagaaatt 2760 ccagcaagca acagctgatg atccagttct acaggaactt actaatgtgg ttttagattg 2820 gtggcctgaa aacaaagtca aattaccact tgatttgcgg agctactggc aatcagagat 2880 gaaatctcgt taattgatgg gctgttattt aaagcccaga aactgattgt accacatgca 2940 ttacgagatg acatgctaca gagaatacac gaaggccatc tagggattgt taaatgtaaa 3000 caaagagcaa gagacactct gttctggcct ggaatggcga tggaaatcga gaacaaggtc 3060 tcaaagtgtt acacatgtag tttacatcaa agaaagcaag caaaggagcc gatgattcct 3120 cacgaaccac ctacaaggcc atgggccaat atagggacgg atcattttga attgcataac 3180 aaacactaca tatgcactgt ggattactat tctaagtgga ttaaagtaga agaacttgat 3240 catctagaca gcaggagcac agttaaagtt ctcaaagacc agttttctaa gtacgggatt 3300 cctgatgaag tcatcagtga taatgggccc caatatgcat gtaaggaatt tgcagatttt 3360 gcgaaggact atgaattttt acataccact tccagcccaa catatgccca gtcgaacggg 3420 caaatagaga gaaccataca aacagtcaag aacattctag aaaaatcaga tcaagaggat 3480 ccatgtaagg gtctattgaa ttacagaaat acaccacttg atggaatcaa caaatcacct 3540 gcacagttaa tgatggggcg tagactgaaa acaagtcttc cagctaccgc tgacctactc 3600 aaaccaccta gacaagaaga aattacagag aaactaaaat aataaaggag aagcaaaagg 3660 attattatga tcaaaagtgt tgctcagaac tcaaattatt acaacaagga gaccaagtca 3720 gagttcaact tggaaatgaa tggaaaccag ctgttgtagt gaagaaacac acaacacctc 3780 gatcttatat tatacagacg gagctaggta gaaaatacag gagaaatagg agagacttaa 3840 ttctcacaaa agcaccaatg agtgacccca atgctgaaac tgcaagaatt cccaatgaat 3900 tttaccaggc caaagtactg gcacagagac cggagacact tcagagacac ttcgaagcaa 3960 ccaaggaatc aagtccagta aacaaagagc aacctcatga gtcaccaaat acaaagacaa 4020 gacaagacag ccctgtggac ctgactcccc aagaaccaac taactcagaa ttatttacaa 4080 ccaggtctgg gagaactgtc aagttgccta agtatctaaa ggactatgtt cataagtaat 4140 tctcaccagt gactgatgcc actgcggcat atccacccat atttccgtta ttgttcatgt 4200 taacattgtt cactgcatgt caagatattt agcacacaga cagttgttta gttttagttt 4260 tattccactt cataccaaat caatgtaata gtttatgaac aaagggaga 4309 // ID DNA-6-3_NV repbase; DNA; NEM; 1183 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-6-3_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-6-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1183 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1183 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1183 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 1183 BP; 122 A; 134 C; 280 G; 644 T; 3 other; tacggaagcc cagcggggcc actgccctat tcggtttcgc atttccatgt tttgcaatca 60 acatcacgag tttgtatttt gcttttgcga gtttgtattt tgcttttgcg agtttgtatt 120 ttgcttttgc gagtttgtat tttgcttttg cgagtttgta ttttgctttt gcgagtttgt 180 attttgcttt tgcgagtttg tattttgctt ttgcgagttt gtattttgct tttgcgagtt 240 tgtattttgc ttttgcgagt ttgtattttg cttttgcgag tttgtatttt gcttttgcga 300 gtttgtattt tgcttttgcg agtttgtatt ttgcttttgc gagtttgtat tttgcttttg 360 cgagtttgta ttttgctttt gcgagtttgt attttgcttt tgcgagtttg tattttgctt 420 ttgcgagttt gtattttgct tttgcgagtt tgtattttgc ttttgcgagt ttgtattttg 480 catttgcgag tttgtatttt gcttttgcga gtttgtattt tgcttttgcg agtttgtatt 540 ttgcttttgc gagtttgtat tttgcttttg cgagtttgta ttttgctttt gcgagtttgt 600 attttgcttt tgcgagtttg tattttgctt ttgcgagttt gtattttgct tttgcgagtt 660 tgtattttgc ttttgcgagt ttgtattttg cttttgckag tttgtatttt gcttttgcga 720 gtttgtattt tgcttttgcg agtttgtatt ttgcttttgc gagtttgtac tttgcttttg 780 cgagtttgta ttttgctttt gcgagtttgt attttgcttt tgcgagtttg tactttgctt 840 ttgcgagttt gtattttgct tttgcgagtt tgtactttgc ttttgcgagt ttgtattttg 900 cttttgcgag tttgtatttt gcttttgcga gtttgtactt tgcttttgcg agtttgtatt 960 ttgcttttgc gagtttgtac tttgcttttg cgagtttgtr ttttgctttt gcgagtttgt 1020 actttgcttt tgcgagtttg tattttgctt ttgcgagttt gtattttgct tttgcgagtt 1080 tgtatttgcw tttgcgagtt tgtattttgc ttttgctagt ttgtatttgc ttttgcgagt 1140 ttgtatgttg cttttgcgag tttgtacttt gcatttgcga gtt 1183 // ID NVREP68 repbase; DNA; NEM; 1749 BP. XX AC . XX DT 23-FEB-2011 (Rel. 16.02, Created) DT 23-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE NVREP68 interspersed repeat - consensus. XX KW Interspersed repeat; NVREP68. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1749 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1749 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1749 RA Kapitonov V. and Jurka J.; RT "A family of NVREP68 interspersed repeats from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC This repetitive element is often associated with SAT1_NV. NVREP68 CC has a complex structure: the 168-bp 5' portion is repeated a few CC times. Due to assembly problems, there is not enough data to CC classify this family. XX SQ Sequence 1749 BP; 521 A; 356 C; 345 G; 522 T; 5 other; ccagtcaata tacccattaa atgggtctcc aagaatcgcc ataactcggt tgcattacct 60 tcgatctgaa tcaaacacca ggaggtgata gacgaatagc tgacaacgat tttggcgtgt 120 cagtcatggt tgtggggtgt tgctatggca acctgtgaat tttcaaatct accttagaat 180 ctccactctt gggtacatat acagtaatct tgcggctaca aggcaacctc cacgtttaag 240 taagggacca atgatgcaca taggcatcat tagcacctac ttggctctga gcctaccaag 300 tttggtcctt tgtatcctta aactgtccga gttatgaccg gtaacacacc acctaccttg 360 gtttattggc tatttaaggt gtcacaatag aattttttgt agaacacatg tatatgggat 420 ttgttgcaga ggcattgagg tatcatcctg tgtagttagt ttttaaaaaa atttgcaccc 480 aaatctatca catgctttgg ccaagttcaa ggcattatat ctcatcacgg ttaccatgga 540 taccaaatct tgacacattg ttgtgaagca cattatctct gctatcaggt ttgcaagtat 600 gatggtgatt gatggacagg aacatttttt gcaccagccc caaacacaac tatatagaga 660 aattcaccac ttaccttaga atatgcacta cttaaggtgt cacaacagga tattttgtag 720 aacaaatgta ttggtgattt gttgcagagg ccttgaggaa tctcactgtt ttgtttgttt 780 ttaaaaaaaa tgcaacaaaa tatgacaaaa attgactgaa cgcaaggtaa aatatctcac 840 cagggttacc atggaaacca acacttgaca cgtcaaaatc ttttccattt attgggctat 900 caaccctgat agttcgatta agtttgtatt taaatcaact aagatacagc gattcttgta 960 gacccataaa tagtatgatt tttagggaaa ttttngtgag gtgcctagtc cgacacccaa 1020 aatttgaaaa ttcagtggtc accatagcaa cactccacaa cagtgaatga cacgctaaaa 1080 ctcttctcaa ctattgggct atcacctctg gtagtttggt taagtttgta tataatgcga 1140 cgaagataca gcgattcttg garggtcaaa aatagtatgc tttttcatga aatttccagt 1200 caatataccc ataaagtggg tctccaagaa tcgccataac tccgttgcat tacctgcgat 1260 ctagaccaaa ctgcaggagg tgatagctga atagctgaca acgattttga cgtgtcattc 1320 atggttgtgg ggtgttgcta tggcaacctg tgaakgctca aacttagcca aaaaccttaa 1380 tttttggtac atttacccct actttgaaaa ttcastggty accatagcaa cactccacaa 1440 cagtgaatga cacgccaaaa ctcttctcaa ctattgggct atcacctctg gtggtttggt 1500 taagtttcga tataatgcga cgaagataca tcgattcttg gagggtcata aatggtatgc 1560 tttttcatga aatttccagt caatataccc attaaatggg tctccaagaa tcgccataac 1620 tcggttgcat taccttcgat ctagatcaaa ctccaggagg tgatagatga atagctaaca 1680 acgattttgg cgtgtccgtc atggttgtgg ggtgttgcta tggcaacctg tgaaggctca 1740 aactcagcc 1749 // ID Gypsy-63-I_NV repbase; DNA; NEM; 1018 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-63_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63-I_NV; KW Gypsy-63-LTR_NV; Gypsy-63_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1018 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1018 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-63_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 560-560 (2007). XX DR [2] (Consensus) XX SQ Sequence 1018 BP; 290 A; 247 C; 252 G; 229 T; 0 other; ttcaccaaac tagacgtaaa aaacgagttt tggcatgtcg aacttgacat tgattaatca 60 tacctgacga cattcaacac cccatttgga atatatcgct ggaaacggat gccattcgaa 120 actcgctcgg ctcccgaagt cttccagcga aggatgcatg agctcattga gggcatgccc 180 aatgtggagg taatcgcgga tgactttgtg gttgttggtt atgggaaaac gcacgaggaa 240 gcgagccgca ccagaccatc atctgctttg tgaggatagc ggtctcaagc taaacactga 300 caagataagg cttcgaaata cagaagtgtc gcttatcggg cacgtgtcca ccggcacagg 360 tcttaaggct gacccaacaa aggtaaaagc catcgttgaa atgcctgacg ctacagataa 420 ggcaggggta cagcgactcc tggggctggc tcagtacctt agcaagtttc tcccgcacct 480 gtttgatgtt accaagcttc tgcgggagct tacacaacaa gatgtcgaat ggtcctgggg 540 aggcgcacaa gccacagcac tgagtcagct taaggatgcc gtaacccgta caccagtatt 600 gagatactaa aacctggagg agcccgtcac cattcagtgc gatgcatcac agtcgggtat 660 gggagcggct ctacttcaga acgggaaacc agtatcctat gcatccaggg cgttaaagtc 720 agcagaaacc agatacgctc agattgagaa ggagctgtta gctattgtgt ttgcctgcga 780 ttgatttgag agatatattt acggcctaga cgtagttcat gtcgaaacag aacacaagcc 840 ccttgaggtt attgtgctca aaccactcaa tgctgcaccg caacggctac aacggatgct 900 gctcaggtta cagaaataca gtttgaagct tacatataag aagggtaaag acatgtttct 960 tgcagacaca ctcagcaggg cctacctacc cgaatttaac gcatcgaacc acctccat 1018 // ID DNA-7-1_NV repbase; DNA; NEM; 329 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-7-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-7-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-329 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-329 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-329 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-1_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 329 BP; 111 A; 59 C; 64 G; 95 T; 0 other; cacaggtaac ccaagcactc ggtttgtatt ctagtacgca agagaatttg tatagtgatg 60 aaaaaatgga aaattaaaga aaatagactt catagtggac tcactttatt attatcactc 120 gtttcaccca tacaagacgt cttgtatggg ggtgctgaaa gggaaacgag tgagtaaaat 180 gggcccataa tactcaggag agatcccaaa acagacaaga ataaagtgag tccactatga 240 agtctatttt ctttaatttt ccattttttc atcactatac aaattctctt gcgtactaga 300 atacaaaccg agtgcttggg ttacctgtg 329 // ID DNA-2-1_NV repbase; DNA; NEM; 1953 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-2-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-2-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1953 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1953 RA Kapitonov V. and Jurka J.; RT "DNA-2-1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 386-386 (2008). XX DR [2] (Consensus) XX CC DNA-2-1_NV elements are flanked by 2-bp TSDs. XX SQ Sequence 1953 BP; 648 A; 349 C; 325 G; 631 T; 0 other; cccgtgcgag gtggactagg aaaatcctag gataacctag gaatatccta ggattttatt 60 cctaggaaat cctaagaaaa acctaggaat gaggtgtgaa atttcacggt aaattgggac 120 aaaacaaaca agagtttcct aagattttcc taggaattcc taggaaattc ttaagatttt 180 cttaggaatt cctaggaaga aaattgcttg taaagcctaa gaattcctag gattttccta 240 ggattgcaat atagaatttc agaggaaatg ataaacacta aaccacatac aatgaaaaca 300 ttcaagattc tttttattca aagtttaggt gcatcacatt ttcttgcagg ttaattgtaa 360 atacaaacat acattagaac tcacataaac aagactattg tctatttgtg caaaatcttg 420 gacttagaaa accagtccca tgtattccag cacaactaat atatgtgggt cccgtttgga 480 tgagtttcat gtttaaaata atctaacctc attcaagcaa ccctagtgcc tcagtataaa 540 acaaaatgga agcaaaatgg tataggaaaa aaggatacta gctacattat aataggcatc 600 tttgtatagt catagtttat aactttgtat attcagataa gaagctagaa gcctaaagcc 660 tatatgcacc atttaaattc gaaccctagt aggttagcat gaaaagataa ctaggttctt 720 catttgcagg gttttactgt gatcagaata ttaaaaataa taacttatct ggacaagaac 780 caactacagt aatattggat attcaaaaca aatacctgga caaattttag gtgcaagact 840 gattactagg ttttcactaa gctaagttag ccaattttgt gcttcaagca acagtttata 900 aagcatagaa actttatatg taagcagtga atttgtgtat cagtttgaaa agtttttatt 960 cgattcttgc tattcacgca ttgatacgtt ccttgtacct caaatttctt tcttttctgg 1020 ctttgcaact cgggcacatt ttgctatctc tatcataatg tcctgcaaag atattaagag 1080 aaacacataa gaaggtagta gtgttaagaa gaaaagaatc acaaaacaca tctagttcga 1140 aaagtccgct cacatacgat gattctatgc taaagttggt cgcagaaatc acatttatta 1200 ttgatcctat tacattataa agcccattgc acactaacct ttcactgcaa tccatgttct 1260 gctcatcaag tccttaaaat aggtgaattt cgcgtagaaa agacgggagt aaacggctat 1320 ccgtttggag gttatgataa tggcgttcgt tcgaccgtta tggttttgcg ccttgggccc 1380 aagcccctct cggccactaa agcaaaggac gcccggtaca ttttcatttt acggtcttct 1440 atctgcaaag cgggacttct tttcttataa tctcaagaag catttctatt agaaacaata 1500 tatattatgt ctaaatcaga tctaagattt taaaacaatt atcacccttc gtatctttct 1560 tttcaatgta gtactaattc tgaaaaaaag tacacctcat aaaactcgtg ttcgagtcca 1620 atgcctgtct ttgattacgt ttcttattgt tgtagtatag cttacaaaag tatgctgagg 1680 tctgttcttg tgataaaaat gttcgtttag gatttcctaa gaatttccta cgagttccta 1740 aatattttag aatgcttcaa atcttcttct taagaattcc taagatttcc taatcccaat 1800 tattctgatt ttctggtcta ctgcttatac taggaaatcc taggaatttt taggaagttt 1860 aatcatattt tgttaacacc tttagatcaa acttaggaaa tcttaggaaa ttcctaggaa 1920 ttcctaaaaa cctaggaatc catctcgcac ggg 1953 // ID CR1-22-NV repbase; DNA; NEM; 2440 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE CR1-22-NV non-LTR retrotransposon - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; NVREP549; KW CR1-22-NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1652-2440 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1652-2440 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-2440 RA Kapitonov V. and Jurka J.; RT "A family of CR1-22-NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [3] (Consensus) XX CC There is not enough sequence data to recover the intact CC retrotransposon. XX SQ Sequence 2440 BP; 603 A; 623 C; 547 G; 667 T; 0 other; gaaagaaaat attctagatc tagttctagt tagcgatata aatctagtgg actcggtttt 60 tgtggaggga aacaattgtt taccgtccga tcacaaatgc atctattttg attttcgctg 120 ttcagctaag ataatacatt caccatccag atatgtttat gattttaaga acgctgactt 180 tgcctccctt aggggccatc tacaaacaaa ctgttctgct atagaatggg actctcatga 240 tgtgaacaat tccctcaggt cttggaagag tgcgtttctg gatgcagtag acacctttgt 300 tcctaggcgt aacgtcaaaa acaatcagcg cgctccctgg attgattgcg atctcgcgta 360 cgctataaaa aagtgcgcaa atccaaagac cctgcagttt tcgagaaatt caggagaatg 420 cgtcagcgga taaagaactg gattcgggcg aataggaaag cctacttcac aagaattgcc 480 tctgaagtcc actctaatgc caaacccttc tggtcctttt tcaaaaccaa atcctcttgc 540 agctccttcc tgaaacgatg ttagggggca acaatgaggt caccgaggtc accttgagcg 600 atttgctcaa ggccgaagcg ttttcgaacc atttcaagtc gatcttcagg gaccactccc 660 tgtgcttttt ccagcaggca ccctatgcat aagccatgtg ctttcaagta tcgcgctgtc 720 tacacaggaa gtgctacaag agcttcaagc gctcaatgtt aacaaggcaa tgggtcctga 780 ccttatcccc gcaagacttc ttgttgagtg cgctgatgcc atcgttaaac cagtctgcag 840 tctcttcaac ctctctctcg catcgggcga gattttctct gagtggaagg atgctaacct 900 gactcccatc tacaagaaag gtccgcgtgc cttgttttcc aactacagtg gtatatcgct 960 tttgccgatc ctgtctaagg tactggagaa atgtgttgcc aggcagctag tgtcattcac 1020 agttggccgc atataccatc tgcagcacgg tttccgcgag ggcctttcgt gcactacaca 1080 actgctggcg gttctccacg acatcggcaa gaccctggat cgtggtgtag agacagacgt 1140 tatctacctc gacctgaccc gcgccttcta cttcagaagc tttgtgctct tggtatcaca 1200 ggtagcctct atagatggtt taagagttat ttatcctgtc gccgtcaacg tgtggtctta 1260 aacggcgtga ccagcaattg ggaggaggtg ggttcggggg ttccccaagg atcggtcctt 1320 tgtccaattc tctttgtttt gtacatgact accggatgct gtgtcttcaa gcattgctat 1380 gtttgccgac gataccaaat gctttcgaac tattacaaca ccaaacgatg tgcagaaact 1440 tcaagaagat ctggactcac ttgcgaaatg ggcaacctac aacgagctct ttttccagcc 1500 aagcaaatgc gaaaatctgc gagttacgcg aaagagacag agtttcgaag gagagtatgt 1560 tctcggcggt gccacactgg aaagggtaac atctgtccgc gaccttggcg tccaagtgtc 1620 acaggacctc tcctggggtg aacacaccca taacgtcatc tcaaaagcaa acaagatgct 1680 cggcttcctc cggcggcact gctcaaacgg tctccccctc gatttacaaa agacgctgta 1740 tgtctccctt gtaagatcgc acctcaccta tgctagccag gtgtgggcgc cctgccagtt 1800 ggggtctctc catctgatga gatcgctaga gagagtgcag aggagagcta cgcgctacat 1860 gtttcaagga ctcgaactgg actataagca gcgccttctt aacattaatc tcctccctct 1920 gtgctatttc cttgaatacc ttgatctgct tttcctctat cgatgtatca aaggcgagat 1980 acacatggac atctccagta tcatccaagt ttcaaactct agcactcgtc gaggttcaac 2040 aggattagat attcgcttga tcgcttcgcg aacctctacc ttccgcgaat cgtattttgt 2100 acgtgtttgc cctgcctgga atgccctccc cctgcaaatt agatcgtctg agcggacctc 2160 cctcttcaag tcccgcctga agtcactact ggcaacgcgc ctatccgaag tcttccaccc 2220 tgacgacatc cggacatggc gcatcttatg tcctatttgt aggcagtgca acattgattc 2280 agtttgtcgc tgttaagttt gctagtgttg tttttatgta tgtaatgttg actatactgc 2340 tgaccaacgg aggctgagcc tgtaagggac ctcgagtcct gttctttgcc tcctacggcc 2400 gtcatcaccg tgaatgtaat aaataaataa aataaataaa 2440 // ID Gypsy-69-I_NV repbase; DNA; NEM; 2309 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-69_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69-I_NV; KW Gypsy-69-LTR_NV; Gypsy-69_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2309 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2309 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-69_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 566-566 (2007). XX DR [2] (Consensus) XX SQ Sequence 2309 BP; 718 A; 516 C; 525 G; 550 T; 0 other; tgagctactt cacttgaact tcacttgaac gcaatcccaa caagacttga acagattaga 60 gttgacactt aaaaggaccc tgaactctcg cgtctacaaa acaaacctgc cagcagtgtc 120 caagccacat attggaatat caacaaatag agataataac tgtaaactac aggacagaca 180 ggacaaatac aatcaagggt gctaagggtt ttcccatgct catgatctct caaagcgtca 240 gaactgcccc gcgtataaca caaagtgtaa tggttgtaat aaattacacc gctggcagcg 300 tgcatgcagg tctaaatcca ctccaaatcc acctccaaga cccgacaaat ggacaagcaa 360 gtcagcatct aaaagtaagc ggcagcaatt acacttaatg gaaaaggctg gccctgaacc 420 tcatgaagag tacttatact ttcactcact taatgttgat gtgatgtcat ccagaatgga 480 attggtgaca gtagaaatta acacgaagcc tgtcgttgtt aaagttgaca ctgcagcaga 540 aaagtcattc ccgatgacaa gtaccaagaa cttttctcgg acagtcaact ttcagacagt 600 acgattaaga taacagcata cggaggacac ttgataaagc agtatggtac ttgcacctta 660 gagattgaac ataagggcaa gactataaac agtgtatttc atgttgttga ttgcaaggaa 720 ccagttatcc tcggtcttcc aacgtgtcag aaactggaat tgataacact gatctccaca 780 agaaacccca agaaaggaac cagatggtaa caatgctaaa gaggaattgg ttagtgatta 840 caaggattgc tttgatggca ttggctgctt cgaaggcgaa taccacataa cgctagacga 900 aactgtacca ccagctaaac acccaccccg tcgcgtacaa gaggctttac gcgagccttt 960 taaagcggag ttagattctc tatgcgagaa agtaattaaa gagaaggtgg acacacccac 1020 agactgggtt aactcatttg tgtgcgtcac taagtcaaat ggctcgatac gcctgtgcct 1080 ggatcccaag gatttaaata aggcgataag aaggcctcac tactgtacac caaccctaga 1140 tgatgtacta ctaatgagcc actattgatg caaagagtgg ttactggaac gggagatatc 1200 gttttctccg gctacctttt ggattggtct gcgcacagga tgtgttccag aagaaggtgg 1260 aagagacttt tggtgacctt acgggagtca caggtatcgc agatgatatt gttgtcgttg 1320 gatttaaaga tgatggcagt gatcatgatg aaaatctgag tgctgtgatc gaacgggctc 1380 aagcaactgg gatcaagttt aacccagatt catgtcgtgt caagtgtacg agtattccat 1440 tatatggcca tattctaaat gcaaatggcc tgggagtgga tcctggaaag atagaggcaa 1500 taacggctat ggatccttct acttcagtcc aggatttaca gtcatttcta ggagctgtac 1560 agtacctaag cagattcata cctaatctcg catcatcgtc agcaccatta ccggatctta 1620 ctaaatcggg cagtgagttt gtctggtccc cagaacacca gaccagtgtc aacagcatta 1680 agcaggcaat tgcggcacct gcagcactga agtatttcag tggcaagcag ccagtgacga 1740 tccaggttga cgcttctgca gcgcggccac ggagcagtac tatttcagga cgagggacct 1800 gttgcgtttg gcagcaaact cctcacggag acggaacgtc gctactcgaa cattgaacga 1860 gaaatgttag gagtagtaca tggactcgag aagtttcatt atgatgccta tggtagacca 1920 gtaaaggtgg aaacagatca taaaccactt gatgagatga gataccaggc ttggatgtct 1980 cggtacatga gctacttcac ttgaacttta cgggtactaa atccaaatca cacaaatggg 2040 aacctggtgt catacagaat gcaacaccag aaccccgctc atacatggtt gccatggaaa 2100 ttggcagaac cctgagacgg agtcgtcgtc atcttcatcg gactggtgag acatttagct 2160 ttcaaccaac agacactgca ctcggagatg atgtttgcga ccctaaacct gatactagca 2220 gtattcctga cacctctgcc aatacagtgg ataaaccacc actacgtcat tcaaccagaa 2280 tcaggaaagc tcctgagaga ctggacttg 2309 // ID TE-1_NV repbase; DNA; NEM; 576 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone TE-1_NV transposable elements - consensus. XX KW Transposable Element; Nonautonomous; TE-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-576 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-576 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-576 RA Kapitonov V. and Jurka J.; RT "A family of TE-1_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX CC Its 156-bp 3' terminus forms a palindrome. XX SQ Sequence 576 BP; 176 A; 110 C; 122 G; 168 T; 0 other; ttataaaata attgagatag tacaggcgct ctgattggtg ggattggtca ctttcattac 60 atgatgaagg tcatgcgatg acgcagcata aaatcgtgta aggggaattc gtgcatcatc 120 agtcaacaac cctgtgaatt cccacgaact tttacctttt aacactaaaa aatattattc 180 ttcgggagaa aaacgtgtcc caggtaaata ggaaattgca aaataagtcc aaatagatga 240 accaccaaac gatgaagtaa atattgcttg gaatttgaag ccagtttttc aaactgtttt 300 ctgcgcgcga gctgacgtgc actggaatga cgccatgagc gcgcgctgtt gtgaagtttt 360 tttgtctttt gcgtaggatt agaaataatt ttataaaaga aataaaacat tctttttgtg 420 ccttcattga gttttgaaaa cctcggtgtt tgtttgggga attctcgagc agatgtgaag 480 cactcgacct gcggtctcgt gctccactga tctgctctcg aattctccca aacaaaaaca 540 cctcggtttt caaaactcaa tgaaggcacg caaaga 576 // ID DNA-9-26_NV repbase; DNA; NEM; 198 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-26_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP305; DNA-9-26_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-198 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-198 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-198 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-26_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 85-93% identical to the consensus. It was reported CC originally as the unclassified NVREP305 DNA transposon [1,2]. XX SQ Sequence 198 BP; 42 A; 55 C; 45 G; 56 T; 0 other; tagcctcctc cgcaggcaac tctactctgt aatggccttt attcagattc gggatacctg 60 tgtttgtgat tttaggacgc gggagactgg tacccccctc ccctgcgtta tttttctcct 120 ctattcgcca caggaacccc gcatcgaaaa aaaacgcttt ttctttccga tgagaagaga 180 tgcctgcgga ggaggcta 198 // ID RTEX-4_NV repbase; DNA; NEM; 5274 BP. XX AC . XX DT 31-MAR-2009 (Rel. 14.03, Created) DT 31-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE Starlet sea anemone RTEX-4_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; CR1e-4_NV; KW RTEX-4_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-5274 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-5274 RA Kapitonov V.V. and Jurka J.; RT "RTEX non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Repbase Reports 9(3), 725-725 (2009). XX DR [2] (Consensus) XX CC This non-LTR retrotransposon belongs to the RTEX clade, a sister CC clade of RTEs. Contrary to RTEs, RTEX elements code for the ORF1 CC protein that contains the esterase domain, similar to ORF1 in CC some families of CR1 and L2. Its 3' terminus is composed of CC different microsatellites. XX FH Key Location/Qualifiers FT CDS 178..1455 FT /product="RTEX-4_NV_1p" FT /note="esterase." FT /translation="MVQNILSKLERIEEAIVKADSTTAETNFEVAKIKEKL FT ANEEATINNSIGNMIKNNMMVFKREQEQFLLQEEQRMSKALNEVGKLQGRV FT GSLVEEKTNLTKRIKSLETSKAELENRLSVLEKEHETVQNQRQQPIQRAAP FT KQEQHQQNPNASTLVQQQQEPKEYDFVFMCDSNRRYINRDELCQVHGTNKH FT TCSIIPCNTTERAIEILKNPTFRVRHGVIINTGVNDVESQPANIVAKKQQQ FT MVHTAMSAFPGKSIIMCSITPRRDSLDEAVFYINAEVGENLSAEKQVILVD FT NGNLRKERFYRDVKHLNKEQGIRVLAGNIKNGIRRALGITKDRYQSKQLSS FT HANRAATQAGRSPPSKQAQRSSDPRLHSRKQPDIPIKNQLSNITRLLEQLL FT NPDHKVCFQQMPPGVSYYPIDLPTEEPRVGVF" FT CDS 1688..5122 FT /product="RTEX-4_NV_2p" FT /note="endonuclease and reverse transcriptase." FT /translation="MVRETQIEMTESTNYLKFCSWNIEGLKGKLEDPEFLS FT ITKRHDLISLVETWLPQNSDLSINGFSTYSVCRKKPENSRRNSGGITILVK FT ASIRKGVRFLEQHSCEDFIWYKLEKSYFNLSRDIYVCTVYFPPRNSPREQQ FT LNVDHFEQLQNSMYKFSQKGEIIVCGDFNARMGNLEDFTDLSDSACSYPFP FT TVRNSRDQNVNAYGKSLAEFSNSNNLIVLNGRTRGDHLGQYTCFTYNGASV FT VDYTLVSQTIYPQVHHFTVSTPSNFSNHCFLSFALKTQKIKDINNLMDLDQ FT HPEVFKWEKESETLLRESIASENVSRDLNEIFKSEEKINVDLAVDSFTNVI FT RQASKQVILVKKQKSSKRSSRQHQKWFNKDCNELRKELRSLGKLLSRYPDE FT PYIRHRFFSTKKAYKQLTKKLKRRFHTDLLEKIKLAADSNPKEFWNLVKTI FT RSDCSARGLHSVSPDAWYNYFKELNTPQNCFSDDSGIEAHIVKNYHVWARN FT RDEILDSPITLEEVQSTAKLLKNKKASAGDSLNNEIIKVSVESQGRYFVKL FT FNTVLTQGVFPKSWSKGYIVPLHKSGDKCDPGNYRGIAISSCLGKFFTLII FT NGRLTKFLKKYKILNRYQIGFRKGFRTTDHLLVLKTLIDSYKSSHKPLFTC FT FIDFKKAYDSVWREGLLYKLIKIGCSGRFITLLQSMYSDVRSSVKLDQGIT FT PSFSSHVGVKQGCNLSPTLFNIFINDIPEIFSSSCDPVKLDNTSKLNCLLY FT ADDLVILSDSATGLENCLQKLKMYADKWKLTVNMKKSKVLVFGPQQYRRQF FT TTGKWDYGGEPLECVDEYTYLGLKFHFSGNFKSALKSLYNKATRVYHCILN FT RLSNVENVSIQVLLKLFSSLVVPVLLYGCEIWGTCLLGRASSYEIFETKFF FT KVSNDFEKLQLKFFKRILGVHSKTTNLTIYGELGKAPLIVQISSLVAKYWC FT RIKSRIYENTLVGETAKISLSSTSNVPVRFINSLFAWCDLKTLQEIDIEGQ FT QIHTLGKYIKKVLYKSYATFWKTQAQLNQNSGKLRTYCKIKTNFKLEKYLS FT EANVRRRQSMTRLRVSAHKLAIETGRYKNLPYELRICEKCEKNKVGDEYHT FT LMECDYVNDIRRVFFNDLFAINNSFKLLRPKDLFCIL" XX SQ Sequence 5274 BP; 1879 A; 980 C; 1039 G; 1376 T; 0 other; tttgaggaaa gaaaagagga taaaccagga aagcaagggg aaaaaaccgc aaaacgaacc 60 cagaaaaaac ggatagtatc ttcgcccgct gcccgtcgtg ataagaagtt aactttaagc 120 caggggaaag aggaaggtaa aacggaacac caagacggga ataaagatat ctggaaaatg 180 gttcaaaaca tactatcgaa acttgagaga atcgaggaag ctatagtaaa agcagatagt 240 acaacagcag aaacaaactt cgaagtggca aaaattaagg aaaagctcgc aaacgaggag 300 gctacaataa acaactcaat tggtaacatg ataaagaaca atatgatggt tttcaaaagg 360 gaacaagagc aattcctcct tcaagaggag cagcgaatga gcaaagccct gaacgaggtc 420 ggaaagctac aaggaagagt cggttcccta gtagaagaaa aaactaacct cacaaaaaga 480 ataaaaagct tggaaaccag caaagctgaa ctagagaacc ggctctcggt attagaaaaa 540 gaacatgaga cggtacagaa ccaacgccaa cagccaatac aaagagccgc tccgaaacaa 600 gaacaacacc aacaaaaccc taatgcttca acactagtac aacaacaaca agaaccaaag 660 gagtatgatt ttgtcttcat gtgcgactca aatagaagat atatcaatag ggatgaacta 720 tgccaagtgc acggtaccaa caagcacacc tgcagtatca ttccttgcaa caccactgaa 780 cgtgccatag aaatactgaa aaatccaacg ttcagagttc gccatggagt gatcatcaac 840 actggtgtaa atgacgtgga atcccaacct gcgaacatag tggcgaagaa acagcaacaa 900 atggtgcata cagctatgag tgcgtttccg gggaaaagca tcattatgtg cagcatcacc 960 ccacggcgcg acagcctcga tgaagctgta ttttacatca acgccgaggt tggagaaaat 1020 ctgagtgcgg agaagcaagt cattctggta gacaacggga acctaagaaa ggagaggttt 1080 tacagggacg tgaaacatct gaacaaggag cagggtatca gagtgctggc aggtaacatc 1140 aagaacggga tacggagggc cctaggcatc actaaggaca ggtatcagag caagcaactg 1200 tcatcacatg ctaatcgtgc agctacacaa gctgggcgtt caccgccatc taaacaggcc 1260 cagcgctcct ctgatccaag actgcacagt cgcaaacaac cagacattcc aattaaaaat 1320 caactaagta acatcaccag acttttagaa cagctattaa acccagatca taaagtatgc 1380 tttcaacaaa tgccaccagg ggtaagttat tatcctattg accttcctac agaggagcct 1440 agggtggggg tcttctagaa tacgtaaaaa acttcaaaca ctttaattta ttattaatat 1500 ttttttctca aattatttta ctcattacta ttattattat tattattttt aaattacaat 1560 ttcggacgtt agtgttgttt gttttgtcta tggtgtcttg cgttacgttt cgttgttgtg 1620 gtgtggtctg tcaaattagt tatttcttca ttaactatcc atttttattt aaacaagtag 1680 ctgtcatatg gttcgggaga cccaaattga aatgacggaa agtacaaatt atctcaaatt 1740 ctgctcttgg aatatagagg gtttaaaagg aaaattagag gatccagagt tcctatctat 1800 tacaaaacgt cacgatttaa tttcactagt ggaaacatgg cttccacaga atagcgactt 1860 gagtataaat ggatttagta catattctgt atgtaggaaa aagccggaaa acagccgaag 1920 gaattcaggc ggaattacaa ttctagtgaa ggcatcaatc cgcaagggtg ttagatttct 1980 agaacaacac tcatgtgaag attttatctg gtataaacta gagaaaagct atttcaattt 2040 aagtcgagat atttacgtgt gtactgttta ctttccccca cggaactccc caagggagca 2100 acaactaaat gtagatcatt ttgagcagct ccaaaatagc atgtataaat tttcgcaaaa 2160 aggcgaaatc attgtatgcg gagactttaa tgcaaggatg ggtaacttgg aagactttac 2220 cgatttatct gactctgcat gtagttatcc gtttccgacg gtcaggaact cgagagatca 2280 gaatgtcaac gcatacggaa aatctttagc agagtttagt aacagtaata atttaatagt 2340 actgaatggt aggacaaggg gtgatcatct gggccaatac acttgtttta catataatgg 2400 agcgagtgta gtagattaca ctctcgtttc gcaaacaatc tacccacaag ttcaccattt 2460 caccgtttca acaccatcga acttttctaa ccattgcttt ctttcgtttg cattaaaaac 2520 acaaaagatt aaagatataa ataatttgat ggatctcgac cagcacccag aagtatttaa 2580 atgggagaag gaatctgaaa ctttgctgcg cgagtcaata gcatcagaaa atgtgagcag 2640 agacctgaat gaaattttta aatcagaaga aaagattaat gttgatctag cagttgacag 2700 ttttacaaac gtaatacgtc aagcatcaaa acaggtgatt ctcgtgaaga agcaaaaaag 2760 ttcaaagaga agttcaagac agcaccaaaa atggtttaat aaggattgta atgaactaag 2820 aaaagaattg cgaagtcttg gcaaacttct ttcgagatac ccggacgagc catacataag 2880 gcatagattc ttttcaacca agaaagcata caagcaatta acgaagaagc ttaaaaggcg 2940 gtttcacaca gacctattag agaaaattaa attagcggcg gacagcaatc cgaaagaatt 3000 ctggaatcta gttaagacaa tcagatccga ctgctcggct aggggtttac acagtgtttc 3060 tccggatgca tggtataact acttcaaaga attaaatacg ccacagaatt gcttttcaga 3120 cgactcgggg atagaagcac atattgtaaa aaactaccat gtttgggcta gaaaccggga 3180 tgaaatccta gattcgccta tcaccctaga agaagtgcaa tcaacagcaa aattacttaa 3240 aaacaaaaaa gccagcgctg gtgactcatt aaacaatgaa attataaagg tatctgtcga 3300 atcccaaggc cgatactttg taaaactatt caatactgtg ctaacacagg gggtatttcc 3360 taagagctgg tcaaagggtt atattgtacc attacacaaa tcaggcgata aatgtgatcc 3420 gggaaactat agaggaatcg ctataagtag ctgccttggg aagtttttca cactgatcat 3480 aaacggccgc cttacaaaat ttctgaaaaa atataaaatc ttaaatagat atcagatcgg 3540 ttttagaaag ggctttcgca cgaccgacca tttattagta ctaaaaaccc taattgactc 3600 ttataaatca agccacaaac cgctttttac gtgttttatc gactttaaaa aagcatacga 3660 cagtgtctgg agagagggtt tactttacaa actaataaaa atagggtgta gcggaagatt 3720 tatcaccctt ttacaaagta tgtattcaga tgttagatca tcagttaagc tagaccaggg 3780 tataacgcct tccttttctt ctcacgttgg ggtgaaacag ggatgcaacc taagcccaac 3840 ccttttcaac atcttcatca atgatattcc agaaatattc tcttcatcgt gcgacccagt 3900 aaaactcgat aatacatcaa aacttaactg tctcctctat gctgatgatt tggttatact 3960 atccgactca gccaccggtc tagaaaattg cctccagaaa ctaaaaatgt acgcagataa 4020 atggaagctc acagttaata tgaaaaaatc taaagtatta gtttttggtc cgcaacaata 4080 ccggcggcaa tttacaacag gtaaatggga ctacggtgga gagccattag aatgtgtaga 4140 cgaatacaca tatctaggtc tgaagtttca tttctcggga aattttaaaa gtgccctaaa 4200 aagtctatac aacaaagcca cacgtgtata ccactgtatt ttaaaccgtc tgtcaaatgt 4260 tgaaaatgtg tcaatacaag tactgttgaa attgttttcg tcactcgttg taccagtatt 4320 actgtacggt tgtgaaattt ggggtacatg ccttttagga agggcttcat cgtatgaaat 4380 ttttgagact aaatttttca aagtatccaa tgatttcgaa aaactacaac tgaagttttt 4440 caagcgtata ctaggagtcc actcaaaaac tacaaattta actatatatg gagaactggg 4500 aaaagcccca ctaatagtac aaatttcttc cctggtggca aaatattggt gccgaataaa 4560 aagtaggata tatgaaaaca ccttagtggg ggaaacggcg aagatcagcc tttcttcaac 4620 atctaatgtc cctgtaaggt ttatcaattc cctatttgct tggtgtgatt taaagacact 4680 acaggaaata gatattgaag gccaacaaat tcatacccta ggaaaatata ttaagaaagt 4740 actatataaa agttatgcaa cattttggaa aacccaggca cagttaaatc aaaatagtgg 4800 aaagctacgc acttattgca agatcaagac aaattttaaa ctagaaaaat atttatcaga 4860 agctaatgtt agacgccgac aatctatgac tagattgcgt gtctcggcac acaaactagc 4920 aattgaaaca ggccgctata aaaatttacc ttatgaatta aggatttgtg aaaaatgtga 4980 aaaaaataag gttggggatg agtaccatac cttaatggaa tgcgactatg tcaatgatat 5040 acgtcgagta ttttttaatg atctatttgc aatcaataac tctttcaaac tgttaaggcc 5100 aaaagacctt ttttgtatat tatgagctta acagatgact ccattacgag cctagtcctg 5160 aaattttgtg atgatgtaat taaatattat gaatagagga taggcatata agccaaccta 5220 ctttgtatat tatcctaata tacctgtatt ggtatttatt ggaataaagt tatt 5274 // ID DNA-6-6_NV repbase; DNA; NEM; 179 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-6-6_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 6-bp TSD; KW NVREP540; DNA-6-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-179 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-179 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-179 RA Kapitonov V. and Jurka J.; RT "A family of DNA-6-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 77-88% identical to the consensus. It was reported CC originally as the unclassified NVREP540 DNA transposon [1,2]. XX SQ Sequence 179 BP; 53 A; 31 C; 49 G; 45 T; 1 other; cagggctgtc aaaatgtact gaagtaggtg gttgcttaaa aaaagtagcc ggttgtgaga 60 ggattgatgc aaaattagct ctattattca ttttaaacat cagacaaaaa gtagccggcg 120 ataaaacgtg aagtagccgg yggagctccg gcagttgccg gcttgttttg acagccctg 179 // ID R2Nvec-A repbase; DNA; NEM; 3922 BP. XX AC . XX DT 28-MAY-2010 (Rel. 15.05, Created) DT 28-MAY-2010 (Rel. 15.05, Last updated, Version 2) XX DE R2Nvec-A - R2 non-LTR retrotransposon from the starlet sea DE anemone Nematostella vectensis. XX KW R2; Non-LTR Retrotransposon; Transposable Element; R2Nvec-A. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3922 RA Kojima K.K., Kuma K., Toh H. and Fujiwara H.; RT "Identification of rDNA-specific non-LTR retrotransposons in RT Cnidaria."; RL Molecular Biology and Evolution 23(10), 1984-1993 (2006). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 185..3598 FT /product="R2Nvec-A_1p" FT /note="includes RT and restriction-like FT endonuclease." FT /translation="MLRGTGNMNDKRDGSATADPTSALLGAVGDGSLVCNL FT CGLACKSRGGLSIHRRSKHATVYHAERQPAPRAKARWTNDEMILVARKQIA FT SEKSRCSAVVEGMREAVPHRTFDAVKSLKTKNRNYTRILEQIRAECSEEEV FT IESGVLKDRTENVCVQTTSNVPGSAGRAASVELEGNIQVGHQLAQKTMAGN FT NSRKQPANHTNWAEFNIEEGNITLRKSKRKANGMPDATHRPGPPTVDSLKH FT PVCLLQGAADKRDEPHTVEQLYYNIEEGMPLAEEQQWSEKLFDAIDSSLLS FT VEVELGRIVPGCPDEETRQLIDREFLDFIHSYSREKPPQRGLAKSKPPPKG FT PKSLRRQQYRQLQRLWDKNRSAAAEQALTGKWQEVRTAAGVPLSLMEVPWR FT EIFETPSTTDVREPAPAGPVLWQLLRPVTIAEVEDAISSKKSASGPDGVPC FT AALQTMGAASLAAHFNLWLLAGTQPKRLTECRTIFVPKEVNTHLPLHHRPI FT TIGSVVVRLFHQILGKPMEAVLPLGSGQRGFRKGDGICQNIWLLHTLIRRS FT TDLLRPLKLVFLDVKKAFDSVSHESLLIAAKRLGVPGPLLTYINELYSRSE FT TVFEVGGESSGSVKVSQGVKQGDPLSSTLFNCVIDWAVSDLDPHIGVLLGE FT SRVSFLAYADDLVLLSETEAALTSQLNSIEKSLAHCGLKLSTGDSGKSASL FT NIVIDGKAKRWVVNPTPFLRASGGEIRSLVANETYKYLGINIGAQGVKAAE FT YNAFKEALDNLSRAPLKPQQRLFLLKTYLLPQLHHSLVLSRTTGKLLNSLD FT ALVRKAVRGWLKLPHDTHRAFFYAHQADGGLNVPSLYHLIPLLRRSRYERL FT TRVEDPEIREVSRTDYFKRVLGAAAAATTVAGHRIDSKVTLRLAWREALYA FT SADGRGLSQCPLVPEVHSWVTDVSGLQTGSQYISAVRLRGALLPTAVRKSR FT GRGGVNSNCDCCGRGQPEFLGHVLQTCPRTWGSRISRHNHVLSLIAKACRS FT RRWQVLEEPIIQTPAQLLKPDLVIWNHQAAYVVDVSVPGDNTPLSTCHNRK FT VAYYSGESVREWVRSKTGHNPTVSSVVINWRGAMAKESYRLLTKDLRLAKT FT LPRLLVLRVLEGGHGIWLNFHRSTFAVGVT" XX SQ Sequence 3922 BP; 966 A; 1006 C; 1078 G; 872 T; 0 other; ggttggggcc ttctcgtggc ggagtcgtga gtaaggggta taggggtaag ggacaccacg 60 gaccgagaac ggttaccgct caaggcgagt ggtggaaggc ataaaatcgt aacgccgccc 120 tccgacctgc tcctgaaact aatgccaacc aactgactgt ggggctaacc tccccagagt 180 caggatgctg aggggtactg ggaatatgaa tgacaagagg gacggatcgg ccactgctga 240 tcctacctca gcgcttttgg gggctgtcgg tgatggcagc ctggtatgca atctgtgtgg 300 ccttgcttgc aagtctcgtg gggggctctc gattcatcga aggagcaagc atgccacggt 360 gtaccatgcg gaaaggcagc ccgctccgcg ggctaaggcg agatggacga atgatgaaat 420 gatacttgtg gccagaaaac aaatagcttc ggaaaagagt aggtgtagcg cagtagttga 480 agggatgcga gaagcagttc cacatagaac ttttgacgcc gtcaaaagtc tcaaaaccaa 540 gaataggaac tacacacgga ttctggagca gattcgcgct gaatgctccg aggaagaggt 600 gattgaatca ggagtcctta aggataggac ggagaacgtg tgtgtgcaaa caacatctaa 660 cgttcccggt tcggcaggac gggcagcatc ggtggagcta gagggtaata tccaggtggg 720 ccatcaactc gcccaaaaaa ccatggcagg caataatagt aggaaacagc ctgccaatca 780 taccaactgg gctgagttca atattgagga gggaaatatt accctccgaa aaagcaaaag 840 aaaggctaat ggtatgcccg atgcgaccca ccgccccggc ccaccgactg tcgacagtct 900 taagcaccca gtatgcttgt tgcagggtgc agccgacaaa agggacgaac cgcacacagt 960 ggaacaattg tattataaca ttgaggaagg aatgcctctt gccgaagagc aacagtggtc 1020 agaaaagctt ttcgatgcaa tcgactcatc tttgttgtct gtcgaggtcg agctggggag 1080 aatcgttcct ggttgccccg acgaagagac ccgacagctc attgatagag aattcttgga 1140 ttttatccat tcctattcga gggaaaagcc gccacaaaga ggtctcgcta agtccaaacc 1200 accacccaaa ggaccaaaga gcctcagacg ccagcaatat cggcaactcc agagattgtg 1260 ggacaaaaac cgatccgcag cagccgaaca ggccctaaca ggtaaatggc aagaagttcg 1320 gactgctgct ggggtcccat tatcgttgat ggaggtcccg tggcgggaga ttttcgaaac 1380 accatctacg acggacgtcc gagagccggc cccagctggg ccggttctgt ggcagcttct 1440 cagaccagtg actatcgcag aagtagagga cgcaatttcc tccaagaaat cagctagcgg 1500 tccagatgga gtgccttgtg ccgcccttca aaccatgggc gccgcctccc tagcagctca 1560 ctttaacttg tggctgttgg ccggtactca gcccaaacgc ctaacagaat gccgaacaat 1620 atttgtgcct aaggaggtaa atactcacct gcccctccat cataggccaa tcactatcgg 1680 ctcggtggtt gtaagactct tccaccagat tctgggaaag ccaatggaag cagtactgcc 1740 attggggtcg ggccagcgcg gttttcgaaa gggtgacgga atatgccaga acatctggct 1800 cctccatact ctaatcagac gcagcactga tttgctgagg ccactcaagc tggtcttctt 1860 ggatgtgaaa aaggccttcg attcggttag tcacgaatcc cttttaattg cggcgaagcg 1920 tctcggagtg cccgggccgc tcctaacgta catcaatgaa ctgtactctc gttcggagac 1980 agtctttgaa gttgggggcg agagcagtgg ctctgttaaa gtatcccaag gggtaaagca 2040 aggggatcca ttgagttcga cgctcttcaa ctgcgtcatt gactgggcgg tctcagatct 2100 cgacccccac ataggcgtct tactagggga gtctcgagtc tcctttctag cttacgctga 2160 tgacctggtt ctcctatcgg agaccgaggc tgcactgaca agccagctga actcaattga 2220 aaagagtcta gcgcactgtg gtctcaagct cagtacgggg gacagtggta aatctgcttc 2280 gctgaacatc gtgattgatg gtaaagctaa gcggtgggtt gtaaacccta ccccgttcct 2340 acgtgcgtct ggtggcgaaa ttcgatctct cgtcgcaaat gagacgtaca agtacttggg 2400 cattaacatc ggagcccagg gcgtgaaagc tgctgaatac aatgcattca aagaagcact 2460 cgataacttg tctcgagctc cacttaagcc gcagcagagg ttattcctgc tgaagaccta 2520 tctgttgccg caactacacc actcactggt attgtcaagg acaactggca aactattgaa 2580 cagcctcgat gctctcgtaa gaaaagctgt acggggatgg cttaaattgc cacacgacac 2640 tcatagggcc ttcttttatg ctcaccaggc cgacggggga ctcaatgtcc caagtctgta 2700 ccatctaata cctctcctaa ggaggagtag gtatgaacgc ttgacgaggg tcgaagaccc 2760 tgagataagg gaagtgtccc gaaccgacta cttcaaaaga gtcttgggtg ccgcggcggc 2820 ggccaccacg gttgcagggc atcgaattga ttccaaagta acgttgcgcc tagcttggcg 2880 cgaggccctt tacgcttcag ctgacgggcg gggtctctcc caatgcccgt tggtacccga 2940 ggttcactcc tgggttaccg atgtttccgg tcttcagacc ggatcgcagt acatctctgc 3000 tgttcgctta aggggggcct tgcttcccac ggcggtaagg aaatcgaggg gtcgcggggg 3060 tgttaactcg aattgcgact gttgcggtcg tggacaacca gagtttcttg ggcacgttct 3120 ccagacgtgt cctcggacct gggggtctcg catcagtcgt cacaaccacg tcctctccct 3180 tatcgctaaa gcgtgccgtt cgcgaagatg gcaggtgctg gaagagccga tcatccagac 3240 tcctgcgcag ttgctcaagc cagacttggt gatctggaac catcaagcgg cgtacgtcgt 3300 tgacgttagc gtaccgggtg ataacacccc gctcagtacg tgtcacaaca ggaaagtcgc 3360 atattactct ggtgagagcg ttcgtgaatg ggtgcgttcc aagactgggc ataatcctac 3420 agtgtcctct gtagtgatta actggcgcgg tgccatggca aaggagtcct accgcctttt 3480 gacgaaagac cttcgtctag cgaagaccct gcctcgtctg ctggtactaa gagttctgga 3540 aggcggccat ggaatctggc tcaatttcca tcggtcgacc ttcgccgtgg gagtaacttg 3600 atggtgggtt actcgcctct gtgtaacagg caaatgaaag ctgcgcaagc agtcgatgag 3660 ccaaagccgc acagcccccg actggggtac agggcagccc tgggctatgc ccgaagtctt 3720 ttgacaggtc caaacttcac ccttgccgcc agtagggcac cagggccagg tgcaggtggg 3780 cgctttgttc tatttggttt cgcttaattt ttgttaaatt tttcccgtgc gcccaccctt 3840 tttaaccctt ttaacaccaa ttttttttac aaccctctac tcaataatcc aaatgaataa 3900 aagcggcata acaggtgaac ac 3922 // ID DNA-TA-22A_NV repbase; DNA; NEM; 194 BP. XX AC . XX DT 18-FEB-2011 (Rel. 16.02, Created) DT 18-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone DNA-TA-22A_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW TTAA target site; TA TSD; NVREP130; DNA-TA-22A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-194 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-194 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-194 RA Kapitonov V. and Jurka J.; RT "A young subfamily DNA-TA-22A_NV non-autonomous DNA transposons RT in the starlet sea anemone genome."; RL Direct Submission to Repbase Update (18-FEB-2011). XX DR [3] (Consensus) XX CC This is a young subfamily of the DNA-TA-22_NV family of CC non-autonomous DNA transposons: the genome conatains >100 copies CC that ~95% identical to the DNA-TA-22A_NV consensus sequence. XX SQ Sequence 194 BP; 56 A; 53 C; 40 G; 45 T; 0 other; tagccaaatt cgttgttgcg cgacctgcca gaatccaaaa ttcctttctt cgtttgggaa 60 tagcgcgtag tcaatcaaac caaacaatca aaaccagaca aaccgccccc aaagcttgtg 120 tctgactacg cgctattccc aaacgagaca tggattttgg attcgccgag gtcgcgcaac 180 aacgaatttg gctg 194 // ID Mariner-6_NV repbase; DNA; NEM; 2100 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone Mariner-6_NV autonomous DNA transposon - DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; mariner; KW Pogo group; Mariner-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-2100 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-2100 RA Kapitonov V.V. and Jurka J.; RT "Mariner-6_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 615-615 (2007). XX DR [2] (Consensus) XX CC The genome contains just a few copies of Mariner-6_NV. Its both CC terminal portions are not known. XX FH Key Location/Qualifiers FT CDS 1..2097 FT /product="Mariner-6_NVp" FT /translation="MELVEPEEPPKIEASEAIDSSEHTTTESVDNVAQAAE FT ESLVNDSFTVNEPPIAIGTDSAKKRRRELSLSEKIQLIHESQTGTKSQRKL FT ADIYQIGKTTVHEILKKKDDILKAYEQNVDGGRKRVCTRSAYSDINRLAWQ FT WYERMRAQGNQISGPMLQEKARTFAAELDMKDFRASNGWLEGFRRRHGISF FT GASFSGYETSVNVTTEWTEKIMEVTDGYRSTDIYNLVETGLYYRALPDKNL FT VPETESTSTERLTVTLCCNMDGEFEKPLVIGPTANPPCFAKLDSECLPVIW FT RANRRAWITTSIFADWLRTLDRKMRQKDRRILLFLDNSPPHPPTLQLTNVK FT LVFLIKPSNNTVNQLQPLTQGIVEAFRMAYRRKVLFSTLAKLDDSNSPRSA FT KQLMQEITELDACFWIAATLDEISGSTMMNCFESAGFLVNTSADSSLSSYS FT MAFPPQAVSTSPQTSSTPAKAGKSKAKVKKQIKLPNTSTTFEEIMSSAAYR FT IMLTQPMTVKEYITFDAKLKVADDLSEGWEERLVEDYCDNKKNQVFLLSNT FT AGSEGTENIEIEAKIEPVIQTYPEALNINKQLMLFAVKENDGDLVKALYKV FT EAQMQRSHLKKLSSVNQKDVELNDLVTTKINMNTVTSSVDSSEAKGGDKVN FT GTLQQEAQALEIMNQFNQLTSQDQSQETIVELTTVIPESTTICALVPNNP" XX SQ Sequence 2100 BP; 669 A; 481 C; 458 G; 492 T; 0 other; atggaacttg tcgagccaga ggaaccccca aagatcgagg caagtgaagc aatcgacagt 60 tctgaacaca ccacaacaga atcagtcgac aatgttgcac aagccgctga agagtcgctt 120 gtaaacgatt cgtttactgt gaacgaaccg ccgattgcta tcggaacgga ctccgcgaag 180 aaaaggcgac gagaattgag cctcagtgag aaaatccaac tgattcacga aagtcagact 240 ggtaccaaaa gccagaggaa acttgcagac atctatcaaa tcggtaaaac tacggtgcat 300 gaaattttga aaaagaaaga cgacattctg aaagcgtatg agcagaatgt tgacggaggt 360 cgaaagcgag tatgcactcg aagcgcttat tctgatataa acagacttgc ttggcagtgg 420 tatgagcgaa tgcgcgccca gggaaatcaa atctcggggc caatgcttca agaaaaagcc 480 cgcacctttg ccgctgagct agacatgaag gactttcgtg cttcaaatgg ctggctcgaa 540 ggttttcgca gacggcacgg tatttcgttt ggggcgagtt tttcagggta cgaaaccagt 600 gtcaatgtga caaccgaatg gaccgagaag ataatggagg ttactgacgg ctatcgctcc 660 acagatattt ataatctcgt agaaaccggg ctatattacc gtgccctgcc tgataagaat 720 ctagtgccag agactgaatc aacttcaact gaacggctga ctgtcactct gtgttgtaac 780 atggatgggg aatttgagaa gccacttgtt attggcccaa cagcgaaccc cccctgcttc 840 gccaagcttg actcagaatg tttaccagtg atctggagag ccaacagaag ggcatggatc 900 actactagta tttttgctga ctggttgcga acgcttgatc gtaaaatgcg tcaaaaagac 960 cgccgcattc ttctcttcct tgacaattcc ccaccccacc cccctactct gcagctcact 1020 aatgtcaagc tggtattttt aatcaaaccg agtaacaaca ctgtaaatca actccagcct 1080 ctgactcaag gcattgtaga agcttttcgt atggcttaca gaaggaaagt tcttttcagc 1140 accttggcca aacttgatga cagcaatagc ccaagaagtg ccaagcaact aatgcaagag 1200 atcacagaat tggatgcatg cttctggatt gctgccaccc ttgatgaaat ctctggctct 1260 acaatgatga attgctttga atctgctgga tttctggtga atacatctgc agattcctct 1320 ctgtcatcat attccatggc atttccccct caagctgtta gcacttcccc tcaaacttca 1380 agcacaccag ctaaagcagg caaaagcaag gcaaaagtca aaaagcagat caaactgcca 1440 aacaccagta caacatttga agagatcatg agctctgcag cctacagaat catgcttact 1500 cagccaatga ctgtgaagga gtacataacg tttgatgcca agctcaaagt agctgatgac 1560 ttgtcagagg gctgggagga gcgcttagta gaagactact gtgataacaa aaaaaaccaa 1620 gtgtttcttc tctcaaatac agcaggatct gaaggcactg aaaatatcga gatagaggca 1680 aagattgagc ctgtcattca aacatatcct gaagctctta acatcaataa gcagcttatg 1740 ctgtttgccg taaaggaaaa tgatggtgat cttgtaaaag ccctctacaa agttgaagcc 1800 caaatgcaac gttcacatct gaaaaagttg tcatctgtca atcaaaagga tgtagagcta 1860 aatgatttgg ttactaccaa aatcaatatg aatactgtga catcttctgt cgactcatct 1920 gaagcaaaag gtggagataa agtaaatggc acactgcaac aagaggcaca agcacttgaa 1980 atcatgaatc agtttaacca gctgacaagt caagatcaat cacaagaaac tattgtagaa 2040 ttaacaacag tcatacctga gagtactacc atttgcgccc ttgtccccaa caacccagag 2100 // ID R2-1_NV repbase; DNA; NEM; 3488 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 2) XX DE Starlet sea anemone R2-1_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW R2; Non-LTR Retrotransposon; Transposable Element; R2-1_NV. XX NM R2-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-3488 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-3488 RA Kapitonov V.V. and Jurka J.; RT "R2-1_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 653-653 (2007). XX DR [2] (Consensus) XX CC Copies are inserted at the same target in the 28S RNA. Its open CC reading frame is slightly corrupted by a frame shift upstream of CC the RT domain. XX SQ Sequence 3488 BP; 887 A; 821 C; 734 G; 1046 T; 0 other; gagaccatgc cagatgtgac cttctcgtgg tgtctcctgt gagtagccct tgatttttta 60 ggggtgaaac gaagagatct ggcaacgtgg atgctttttc atttgcaagc ataaaacacc 120 aattcctaaa cttctatttt gactagtggt ttaccacccg tgaaccaatt aattggtgta 180 ccatttggaa ccggtatgga tattcttaat tgccctgact gcgatttcat cgctaaaaat 240 aaaggtgggc taacaaacca tcgcacacgt atgcataatt ttatgaaaac cacctctcct 300 gaggtcggtg actttccttg ccgagactgt gatagacgtt ttaaaaccgg cagtggccta 360 tcactgcaca gacggcgtgc ccatcccgac atttatcact ctgagaatct tcctttttcc 420 agagtcaaag ctcgttggtc tcgtgaagag attattttgt tggctcgtgc tgaactacaa 480 gctaaagaag ctaaaatctc agttggaata aataaaattt tagcagatca attccctgaa 540 cgcactcttg aagccatcaa aggaatgcgt aaacaaaata gatatataga aatattaaat 600 caaatacgtg atgaatctat ttgtagcctc ttgcccagcc gagctgttaa cgctgatgac 660 gtcagttctg acaatatctc tttcactgag gtccctgacg acaccgaaaa agagcccagt 720 ccatccggtg gttctattcc gccttgtccc ccttgctgga aatcttgtct cttagaaaat 780 attgatataa aacgcctcgc ggttgagagc cttgatgtta ttattcctgg ctgccctgac 840 gatgcctgtc gtgctttaat tgaccttgaa tttgtctctt ggctcgaatc ccacggtatc 900 gtggctaaag atcataataa taataattgt tgcaagcctt atagtaagaa aaaggaaaag 960 atcaatagta caaacaataa taataccaat aacgctaaaa ggcccgctga caacaggcgg 1020 agaatttaat aaaatacagc atctatggag taaaaataag tcctctgctg cctctaaagt 1080 tcttgatgga tcatgggcag tgcccgatca gaattgtaaa atatattcag atgtgatgtt 1140 taccacttgg tccaacttga tgaaggtccc atctgttgag gataaaagat ctcctgttgc 1200 tgtcggtcct gtgctttggc acctactcag tccaatctcc ttgtcagaac taaaggctgc 1260 cctcagtgga aattccaaaa ctgccgctgg gcctgacaag attacttcta atgaccttcg 1320 aggtttacct tgtgaagatc ttatcgctca ttttaatctt tggttgtttg ctggcaccca 1380 acctagcgat ttgtgtcttg gtaggacaat ttttctaccg aaggagattt ctcctgatga 1440 tgcgcttctt tttcgaccgt tgacggtggc atctgtaatt attcgtctat tccataaaat 1500 tttggcgcgg cgttttgaat cttctttgcc gcttgatcag tcccagaaag gttttaaaaa 1560 aggcgacggc attgcgcaac acgtcttaac aattcgctcc atcattgagg gtgcaaaacg 1620 cgatctaaag ccccttcata tggcttttgt tgatgttaaa aaggccttcg actctgtgag 1680 tcatgaaacg gttgttattg cccttcagcg gttaggggtt ccctcccctt tgatctccta 1740 cattcgcgat ctctacaacc gctcttccac gatccttgaa tttgctggtt gtcgtagtga 1800 ctctgttggt gtgacgcgcg gggtgaagca aggcgatccg ttatccccgc taatatttaa 1860 tgccggtata cgaggcaaat ctgccagttt atcgatagtt attgatggga aggccaaaaa 1920 atgggttgtt gatgccagcc cattccttac agccggctca caagccatcc cagccgtaaa 1980 agcaagtggg gactataaat atctcgggat ccttataggt gcaaatgggg ctaagcagcg 2040 cagtgccttg gccgacgtgc ttaaccaggg cctaagtaat atctcgcgag ctcccctaaa 2100 gccctttcaa aggctcacca tccttcgtga gcactttatc ccgcagttcc ttcatcaact 2160 tgtcctgacg cccgttttcg ccgttttttt gcgttggttt gacaattcca tcaggtctgc 2220 cgtgaaatcc tggctaaaag tgccgaaaga caccatcaat gccttttttt acgccagaat 2280 tgcagacggt ggcctcggta tccctctgtt gacatcaaaa attcctcttc tgaaaaaatc 2340 tcgatttgag aacgtcttta acgcgtgtga tgccatctct aaggctcttt ctgtagatct 2400 atattttagg tctaatcttg aaaaatggtc taaaccagtg gtggttgacg gctttcctat 2460 cagtgataaa tcttcctata acgccgcttt cgcgagtgcg ttgtactcca aaattgatgg 2520 tcggggcctt tccgagtgca acctttgccc ggaggccagt aattgggttc tcaatcctcc 2580 ctcgtttcag tccggccgta agtttattgg cgcaattcga gctcgcgctg gagtcctata 2640 ttctaaggca cgtgcgggac gtggtcgacc tggattcgac acctcttgtg atgcatgcag 2700 acggcccgct accgcccaac acatggtgca ggtatgcccc cgaacatccg gcccccgcat 2760 ttgcagacac aataatgtag cggattttat tcgtaaaagt gccgagaaag tagggtttaa 2820 aaccatctac gagcccgcta ttcgagatcc tattctcggc ctgcgaaaac cggatcttat 2880 cattttcgat gacaatcacg cacatgtaat tgatattacc atctgttcgg accaggtaag 2940 ccccaatact gcccatgcgc agaaagtgga gtattacaac cacccagcaa tacttaactg 3000 ggtaaagcga actactaacg tcgctactgc ctcttgttct gctgtggccg caaattggcg 3060 tggcgttctc gcgtccgata gcgttgcctt ccttcggtcc attctacgct tctcgcgccc 3120 gaagctttcc ttgctctccc tgaaagtcgc cgagctttcc tcggaaattc atgcattctt 3180 ttcgaagtcc acttatcgtg ttggcatggg ataattcttc attccggttc catcgtattt 3240 tctagtgtcg gccgactcta cgggcctaaa ggcaattgat tttagacgtc cactttttat 3300 actataatct tacatattat ttagagttaa taaaataatt atttagagaa gtcgtatttt 3360 tatatattta tactttattt taattgatac ataggctagc ttaacattat cgttagatta 3420 cataggttat tagttattaa cgcagtaatc aataaagtgg actctttttt tcaattagtc 3480 ctacatat 3488 // ID CR1-21_NV repbase; DNA; NEM; 4799 BP. XX AC . XX DT 17-FEB-2011 (Rel. 16.02, Created) DT 17-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone CR1-21_NV autonomous Non-LTR Retrotransposon DE - consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR1-21_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4799 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4799 RA Kapitonov V.V. and Jurka J.; RT "CR1-21_NV non-LTR Retrotransposons from the starlet sea anemone RT genome."; RL Direct Submission to RU (17-FEB-2011). XX DR [2] (Consensus) XX CC Its 3' terminus is composed of (TGTAGA)n. XX FH Key Location/Qualifiers FT CDS 1030..4458 FT /product="CR1-21_NVp" FT /note="AP endonuclease and RT domains." FT /translation="MAGHLMAPLIVLLFALHLQNFLLRWQSPLIESKAGPF FT ISPALFEMSLDKVKIFMNNIHPNRRKLIAPRSNPSSLAFRLLILSGDIPLN FT PGPTYRYPCGACSKPVKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSS FT CSWICCACDVANFSKSSSGPDIPDDNYYLSLSTSVQSSGSESPQPLTSSPR FT QRSPASNKMKDPHKLRVLTLNACSLKGKDKRLEFQSLIDNYKPDIVNVNET FT HINDTVFSAEILEKGYTIFRKDRNEFGGGVLSAFSNHLVVTHEEQMDGNYE FT GIWSKINIAGSKSLFVGSVYRTPDSNVDPLVALDGALCKLVKNPIPNILIT FT GDLNLPSISWEDDNYAVRPNPTYGLEVNHKFLDIVNDHSLTQHVMEPTRGE FT NTLDLVLTTCPEMVLDLVVEPGMSDHDLVLFDLNLKPSFNKKKPRKVFVFK FT KGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDFFKTTITEIMKKHIPQKN FT ISGRWNLPWITSSIKRLIRKKQRLYNHAKHCNNHAAWKKFKDLRKLVKKNL FT AKAHSEYVSQLLTVPEGSETANHTITKRFWTYIKSKKTHDVGVAPLRDDKG FT ELVSDSLGKARALSSQFQSVFTHENNSSIPTLGPSPYPTIPSTLISIDGVI FT KLLQNVNPKKANGPDLIPCKILQEAAHEIAPALTFLFTQSLETGTLPNDWL FT SANVTPVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMNHLDTHNILV FT KFQHGFRRFFSCETQLITTLEDVGKALDLGRQTDLIIMDFSKAFDIVPHQR FT LISKLDFYGIRGLLKTWLTTWLTHREQSVLVDGVSSAPISVSSGVPQGTVL FT GPLMFLLYINDIGNDCKSSTIRLFADDTLLYSVIEATSDAHQLQSDLTSIE FT KWAEKWLMSFNPTKCFVMRVTRNREPIVFNYTLMNHILKPVEHHPYLGVEL FT SNTLDWSWHINNKVSKANQTLGFLRRNLSNCPENIKEAAYKSLVLPHLEYA FT SSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTNILNDLEWPPLSK FT RRQDARLTLFYKAVNKKSALEIPDNIDRRTRQLRSSHPDKFIELCPRTEAY FT KNSFFCRTIKEWNKLPRLTLDSTSADIFRERIKLN" XX SQ Sequence 4799 BP; 1427 A; 997 C; 874 G; 1501 T; 0 other; gactggtgaa ctgctgactg ttagcgcgag gtggagagtt gtggagcctt caaggtattt 60 cgccagacat caaaccatta caacattcat tctcatttac tgactatata gaagagttgg 120 agaatagcaa tattagttta ttttaaggca gaaattcgcg tattgaaaat tgaaattttt 180 tggatttctt gaatgcagcg ttgcatcatt gaagtcgcat gagtatcaca aatatcacag 240 gcgaagggtc ataaggtaat acaagagggt tttcttttgc cataaggttt ctcctgtagc 300 ctttcttgac taaactggtt gcacttcgtg agtctttccc gccatttcta tatttttact 360 gttgtgactc tgtcacactg ttttgtccgc tgttttgtcc tacgacaaaa actgacttcc 420 cacgttgtct cctgtttttc cggcttagtt ttcttgtgtt tgaaactgta ctttgtgttt 480 tcaccataag cttaagtgat attttggata attcttcact tacaaacaat aatttattca 540 gctccgaaat cagtcgcctg taaattctgc gaaggatttg catatttttc tgagccctga 600 ttgcgatgcg ctgttgttgt gtcagtctca cggtaggcca gtcacagttg ggttgatgac 660 aaagagttag tgattgcggt cggattgcgt tgttgtgtaa tactgcttgg agtttttcta 720 ccagtgggtt ctaagtgcat tgttgactga gcgcgttggt tcagtttacg ggcgactcga 780 gtccaacttg tttttgccac cctgcatttt cattgtagtc ttttaactat tttattctac 840 ttaattttac cttgattatt gattattaat aattaattga tctagttaaa taaaagaaag 900 ggaaactaat caaataatta tatacaatca aacaattatt taaccggaat aaccggaaaa 960 taacctacaa tactatttct gtaattcttt ttcaaaaaaa atatatatat aataattata 1020 tctggcataa tggcaggcca cctcatggcc cccttgatag tactcctatt tgctctacat 1080 ctccagaatt tcttattacg gtggcagagc ccactaattg agtctaaggc cggacccttc 1140 atttcaccag cactttttga aatgagcctg gacaaagtta aaattttcat gaacaatatt 1200 catcccaatc gtagaaaatt gatcgctcca aggagtaacc caagctcact cgcctttcgc 1260 ctactcattc ttagtgggga catccctctc aatcccggtc ccacctaccg gtatccctgt 1320 ggagcatgct caaaaccagt taaatgcaac cagaagggta ttcagtgcga ctactgcgat 1380 gcatggtatc acacaaaatg ctgctcaata agcaatgaaa gttacaatac acttgctaac 1440 agttcttgtt cttggatctg ctgtgcctgt gatgtggcca atttctcaaa gtcatcaagt 1500 ggtcctgaca ttcctgatga caattattat ttatctttat caacatcagt acaatcatcc 1560 ggctcagaat cgccccagcc actaacatcc tcccccaggc aaagatctcc tgcatcaaat 1620 aaaatgaaag acccccacaa attgagagtg ttaacactga atgcttgtag cttaaagggt 1680 aaagataaac gccttgaatt tcaaagcctg attgacaact acaaacctga tattgttaat 1740 gtaaatgaga cccacattaa tgacactgtc ttttcggctg aaattctgga gaaaggttac 1800 accatttttc gtaaggatag aaacgaattt ggtggagggg tgttgtctgc tttctccaac 1860 catcttgtgg tgactcacga ggagcaaatg gatggtaatt atgaaggcat ctggtcaaag 1920 ataaatattg caggaagcaa atcacttttt gttggctcag tctataggac cccagactca 1980 aatgttgacc cccttgtagc tctcgatggt gcattatgca agctggttaa aaatccaatt 2040 ccaaacatcc tcattaccgg tgacctgaac ctgcctagta tatcatggga agatgataac 2100 tacgctgtaa gacctaatcc tacttatggg cttgaagtaa accacaagtt tttggacatt 2160 gtgaacgacc actcactgac tcaacatgtt atggagccaa ctagagggga gaacaccctc 2220 gatcttgttc tcaccacttg cccagagatg gtattagacc tagtggttga gcccggcatg 2280 agtgatcatg atctggtgtt atttgatcta aacttgaagc cctccttcaa caagaaaaag 2340 cctcgtaaag tctttgtatt taagaaaggt aatatgggtg cagtgaaaac tgaccttaaa 2400 aaacatcttg ataattactt caacaatgag gcctatcata aattgatcaa tgaaaactat 2460 gatttcttta aaaccacaat cactgagatc atgaaaaaac atatcccaca aaaaaacatc 2520 agtggtagat ggaacttgcc atggatcact agttccatta aaaggttaat ccgaaaaaag 2580 caacgtctat ataaccatgc caaacactgt aacaaccatg ctgcctggaa aaaatttaaa 2640 gacttgcgta aactcgtaaa gaaaaatctc gctaaggcac acagcgagta tgtgtcccag 2700 ctcttaacag tcccagaggg tagtgaaaca gcgaaccata ccataaccaa acggttctgg 2760 acgtacatca agtccaaaaa gacccatgat gttggtgttg ctcccctacg cgatgataag 2820 ggtgaattag tcagtgacag tcttggtaag gcacgtgctc tgagttcaca gttccagtcc 2880 gtttttactc atgaaaataa tagttctata cctacacttg gaccaagtcc ttatccgact 2940 ataccgtcta ctttaatatc tatagacggt gttatcaaac tacttcaaaa tgttaacccg 3000 aagaaagcta atggccctga tttaatcccc tgtaaaattt tacaagaagc tgcccatgaa 3060 atcgccccag ctctgacgtt cttgttcaca caatctttag agaccggtac tctcccgaat 3120 gactggctca gtgcaaatgt gaccccagtg ttcaaaaagg gaaataagaa tatcccttcc 3180 aactaccgtc ctatttcact gactgctgta ccttgtaaaa tacttgagca cattattttc 3240 catgacataa tgaatcatct tgatacccat aatatcctcg tcaagttcca acatggtttt 3300 cgcaggttct tttcctgtga aacgcaatta ataaccaccc tagaggatgt ggggaaagct 3360 ctagatctcg gcagacaaac tgatctgatc atcatggatt ttagtaaagc ctttgatatt 3420 gttccccacc agcggcttat ttccaagctg gatttttatg gaattcgggg tctcctaaag 3480 acctggctta caacctggtt aacacatagg gaacaatccg ttcttgttga tggagtctca 3540 tctgccccta taagtgtgtc atctggtgtg ccccagggga ccgttctcgg cccactgatg 3600 tttttactct acataaatga catcggcaat gattgtaaat cttctaccat aagattgttt 3660 gctgatgata ctcttttata cagtgtcatc gaggcaactt ctgatgcaca tcagctccag 3720 tctgatctta cctccatcga gaaatgggca gagaaatggc tcatgtcctt taacccaaca 3780 aaatgttttg tcatgagagt cacgagaaat agggaaccta tagtatttaa ctacacattg 3840 atgaaccaca tccttaaacc agttgaacac catccatacc taggcgtcga gctctcgaac 3900 acacttgact ggagctggca tataaacaac aaagtgtcca aagccaacca gaccttaggt 3960 tttcttaggc gcaacctaag caactgccca gagaacatta aggaagctgc ttataaatcg 4020 ctcgttcttc cacacttaga gtatgccagc tctgcctggg atccatggtt gaagaaacac 4080 gtcaaacaga ttgagaaggt tcaaaggagg gcgggtcgtt ttgttaaaaa ttgctgggat 4140 aggactcctg gcacagtcac aaacatccta aacgatttgg agtggccccc tctctctaaa 4200 aggcgccagg atgccaggct tacattattt tacaaggctg ttaacaaaaa atcagcactt 4260 gagataccag acaatattga tagacgcacc cgccaattac gcagctctca tccagataaa 4320 tttattgagt tatgtccaag aacagaagct tataagaact cgtttttctg taggacaata 4380 aaagaatgga acaagctgcc ccgccttacc ctggattcca ctagtgcaga tatttttaga 4440 gaacgaataa aattaaatta aatcaataaa attatattaa taccaataat gctgtttaaa 4500 cgatttttat ctttttactt tatttaatct tttttttatt ctgccttatt attattttta 4560 ttctgcctta ttattatttg tattattatt tatttattat tattattatt attattattt 4620 ctattattat tttattttat gttttttatt ttttattttt ttatttttta atttattttt 4680 tttaattttt ttttttattt tagttaatta attaattaat gtatttattt atacaattaa 4740 tttatatcca cagtgatggt aacccctttg tggattaaca atgtagatgt agatgtaga 4799 // ID DNA-TTAA-8_NV repbase; DNA; NEM; 1039 BP. XX AC . XX DT 28-MAR-2011 (Rel. 16.03, Created) DT 28-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TTAA-8_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP387; KW DNA-TTAA-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 18-1039 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 18-1039 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1039 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TTAA-8_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-MAR-2011). XX DR [3] (Consensus) XX CC Copies of this transposon are ~92% identical to the consensus. CC Some elements were transposed as the Helitron-N7_NV elements CC containig an inserted copy of DNA-TTAA-8_NV. XX SQ Sequence 1039 BP; 335 A; 193 C; 168 G; 343 T; 0 other; ggtactagca ccggctattt tggggtattt tgggcttgtt ataaaattga actgccatgg 60 aattgatcaa aactgactac agatatagaa agaatagata ctaaagatca gtttggaaaa 120 gggtggttga tgagattgac agctgaaggt gttaatggaa aaaactcccg cttgtttctt 180 tcttattagc tctactacac acatggcaag ttttatcgca aagccatttt tcttcttgga 240 gcaaaatgtg tttgaccttt cctgtataga aaataatatt ataaatctgc caaaaaaatt 300 ataatcgctc aacgaaacag ggtttcaaaa ctctttactt gtttacctca atgcccctag 360 cagtaactgc aaattttggc tcaaatactt tatttatcct gtagatatac accgaagaat 420 atagttcgaa tccccataat tcaattattt tgccgaataa gcatgcattt tgcacaaaat 480 tccactaaaa ctccagcaaa actacaagct agcatcacct ccagtgtatt ttctttgaaa 540 taccgctgac ttttgctcca aaagttgctc ctagccctcc ccagaaggga aattctgtgt 600 gcaatcgtat tcaaattagg gatgcgtgat atatgagccc taattaattt gaccttttga 660 acagcatgtt accaaataat ttcagtgcaa aattaaataa atacaatacc cttccaagtt 720 tttttacatt cttcttgtct attttgagtt attgaatgta taactcggtc cacattcgac 780 ttttttcgct tcaatactaa gtaaacttac attttgatgt tgcacaagca tgaccttatc 840 taagtgttga cagatgtgca aagctattaa tgattcacat ccacaaaaac agctgtgtat 900 tttacttgct tctagagaga gaactttttg atgtaaagaa aaataaatag catatatgaa 960 aaatagatgg ttatccaaaa ccacttgagt aggatttttt tttaattgca cgccatcatt 1020 ttttgccggt gcaagtacc 1039 // ID DNA-6_NV repbase; DNA; NEM; 320 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-6_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-320 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-320 RA Kapitonov V. and Jurka J.; RT "DNA-6_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 406-406 (2008). XX DR [2] (Consensus) XX CC Target site duplications are not clear (can be TAAT). XX SQ Sequence 320 BP; 72 A; 70 C; 87 G; 91 T; 0 other; gggggggggg gggtgaatag gttcgcggat cggcggattc agccccgaaa tgctcacgga 60 ttacggattt tgatgattat ttcagcggat tggcggattt tggaaatacg gcggatcacg 120 gatctgttga caatttgggc acggatttcg gattttgact gctttgacgg tcgaatttcg 180 gattttaaat gaatttcaat cgatgctatt gtttatctgt caaaccatgc ggatctaaaa 240 atatctgcgg atccacggat ttgccccgaa aatgttgcgg atcggcggat ttacataccc 300 ctattcaccc cccccccccc 320 // ID Kolobok-1_NV repbase; DNA; NEM; 7641 BP. XX AC . XX DT 27-FEB-2007 (Rel. 12.02, Created) DT 27-FEB-2007 (Rel. 12.02, Last updated, Version 1) XX DE A family of autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; KW Interspersed repeat; Kolobok-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-7641 RA Kapitonov V.V. and Jurka J.; RT "Kolobok, a novel superfamily of eukaryotic DNA transposons."; RL Repbase Reports 7(2), 114-114 (2007). XX DR [1] (Consensus) XX CC Kolobok-1_NV is a consensus sequence of a family of autonomous CC Kolobok transposons that were active in the lancelet genome in a CC last few million years. The Kolobok-1_NV transposon is CC characterized by 15-bp terminal inverted repeats, TTAA target CC site duplications, and it encodes two proteins: (i) the 746-aa CC Kolobok-1_NV1p transposase and (ii) the 171-aa Kolobok-1_NV2p CC protein. The second protein is conserved in highly diverse CC Kolobok transposons present in the genomes of vertebrates (frog, CC fish), chordates (lancelet, sea urchin, sea squirt), and CC cnidarians (starlet sea anemone). Kolobok transposons, including CC numerous families of non-autonomous elements, constitute ~2% of CC the starlet sea anemone genome. See also comments in CC Kolobok-1_XT. XX FH Key Location/Qualifiers FT CDS 6147..5635 FT /product="Kolobok-1_NV2p" FT /translation="MDFIDSLLVMEDDDNDREEENLGLAMEPMDVAGPSTH FT PQGPTAVGITPAPRPPGEPLPDWCKCGNCREMPQQIENVCCGKRNCESTKA FT RFGKLCLDVEVLSLGIRSSADIRNDWHDSSARAFRKAGYRNYILDKHGYLG FT KGRRRVAPSCIVWQIRHHYPTRTGIYMGFREN" FT CDS join(314..453,563..615,742..835,1081..1215, FT 1360..1421,1796..2280,2550..2985,3293..3369, FT 3462..3590,3801..3994,4178..4246,4539..4902) FT /product="Kolobok-1_NV1p" FT /translation="MGAATHTRSIAERCLSTWQELRKASVYASDSAFASHL FT LSLELRRRERFTKTTTGGPKQKAAAIREPQTSTPVGKHHNRMADPEISLSE FT AGSDQGDNIVDITGSTICRLGYSIVDGEVVVDQEQEAEESEESYSSQSDDD FT LDESIKTALELLNTDLDMSDDEKIATPAQQPETPKDTPSMVPVPEIATPQQ FT PETIQPETPKDIPSMAPVPEIATSQQPETIQPDEPEQPGIHLKPECFLREK FT QINFFREELRMVQSTKVLCSLDLLADEFRKRCGQPGCTEKPTVKHVINGVG FT ATFISVCSMGHQGRFSTTEFDGNGMSVNNLQVAAALLLSGNNFAKIEKFSK FT FLGLSFISASTFYRVQRLYAIPTINEWWEWMRETIINTLQEQDVVLAGDGQ FT CDSPGFSAKNLCYFLMEIVTGYILEVEIMDKRHVNMKSATMERKALDNALS FT RVKKVLSVTEVCTDASSSIKKMIAEEFKGIFHSLDVWHKAKSIRKCLLKVS FT NTRENGKVGKWTDHIIRHFWHCCSVCGEGTSTDEEALERLKNQWISLLHHV FT CNTHEWPTGKCHHGDLPDEHELPWFDRRDKDFQALQKVILEPSLLDSFKSY FT VRFRHTGALECANSLSLAYAPKRCAFSYEAYKARKQLSAIDWNFHQGREKA FT VNDKGEQMVSRKYNRRTKEWNLRIIKVGKTYDYIPMLMAMIIRKRFTDIDG FT ITRHVSLAEDDPARIQPTLAMAKPVSSRELFQAHQSRFRPPSTENE" XX SQ Sequence 7641 BP; 2330 A; 1541 C; 1471 G; 2299 T; 0 other; agccgcattg tcagcagttt acttccggtc gattacgtaa caattacctg gtccgacgga 60 aacctcaaac gccgccattg taaaggggag acaaaagaat ctattagaat cgacgctatt 120 taagagccca tccgatctaa attatcagtc acaacctcga agaaacttcc aattgacaca 180 ttgctattac cattttgaaa ttatttgcgc gttttccgta aaaaatcatg gcttcaagga 240 gcccgggtgc tcgcaggaga ctcggcggtc gaccaatgct ttcgccagag catccaatga 300 aaagaaaaaa aacatgggag cagcaacaca tacgcgttcg attgctgaaa gatgtttaag 360 cacatggcag gagttaagaa aagcgtctgt ttacgcgagc gactcggctt ttgccagcca 420 tttgttgtcc ttagagcttc ggcgccggga gaggtgagac aatcagagac aaaactatat 480 atcgcattct tttcgagagg ttttaggtcg ttactttgct ttgctaaaga tgttgttttc 540 ctacttcttg tgtctattct aggtttacaa aaacaacaac tggcggacca aaacaaaagg 600 cagcagccat acgaggtgag acttttaccg cgttcttgtc ctcctaatga gactctctga 660 atcgatacca gatgctcatc ttagtttctt acttttattt gaaatattta ctaatcattt 720 gtctctatgc tgttctatca gaaccgcaaa cttcaacccc agtaggaaag caccacaaca 780 gaatggcaga cccagagata tctcttagtg aagctggcag tgaccagggg gacaagtaag 840 ttaatacaca ctcttttaat gaaacttact caaacgtgga taaatcccta ttcactcact 900 attttagaaa tcatttccaa tagaaaaaat cacaaatgtc aatatatatc ttgaatttcc 960 tactatctag aactgcagtg gtttttgctt catcatttgt catgacacat gactttcaat 1020 gacactaaat ggcattcagc atcatgttta ataagccatt ctaataagtc ctttgtgcag 1080 tattgtagat ataacaggca gcacaatctg ccgccttgga tattccattg tggatgggga 1140 agtggtggtg gatcaggagc aagaggcaga agagagtgag gagagctact cgagtcagag 1200 tgacgatgac cttgagtaag catgatctta cacacactgc tgtttccttt acacaccctg 1260 ctacttcctt tacacaccct gctacttcct ctagacagat cctgtatata cccatccaga 1320 tcctctatga tgtgttgaaa tttttttcta tttttgcagt gaatcaataa agactgctct 1380 tgaactattg aatactgatt tggatatgtc tgatgatgag agtgaaatgt aagtatttca 1440 gaagaaacat acagtacttg cttctattac agccatcaaa acactatgtg ataagaaagt 1500 acttaagtgc aattgagtga tgtgagtgat aagaaaaagg gtgcttgaag gtcaaattgt 1560 gttccccagt taaagggttt attgcaaaat tactataata ttattaacaa tatgttgcat 1620 gtgcttgttc aacagtgatg atatctcaga aatgtgtata gaggaggatg agttagaaat 1680 tgagtcaccc acaaccccat caatgctatc tgtatcagag atagaaacac cagatcaacc 1740 aaaggccatt caacctgaga caccaaagga cacccatcaa tgctacctgt accagagatt 1800 gcaacaccag cacagcaacc tgagacacca aaggacaccc catcaatggt acctgtacca 1860 gagattgcaa caccacagca acctgagacc atccaacctg agacaccaaa ggacatccca 1920 tcaatggcac ctgtaccaga gattgcaaca tcacagcaac ctgagaccat ccaacctgac 1980 gaacctgagc aacctggcat ccacctgaaa ccagaatgtt ttctcaggga gaagcagata 2040 aattttttca gggaggaatt aaggatggtg caaagcacaa aagtgttgtg ttccctggat 2100 ctcctggctg acgaattcag aaagagatgt ggacagccag ggtgcactga gaaaccaaca 2160 gtgaaacatg tgattaatgg agtaggcgcc acctttattt cagtctgcag tatgggccac 2220 caggggcgtt ttagtacaac agagtttgat ggaaatggaa tgtcagtaaa taatttacag 2280 gttagtaggc atatatattt tcttttaaat gttagacctt gtttatatgc ctcatttccc 2340 agatcataga gtaaacttgt attccaaagt tgtccccaat atcctttggc tggtggttgg 2400 tttagcttgc taaataaagt agaatgtaaa ttttgatata gaagtacaag gaatgttgga 2460 tttacaggct gttatccaag tgtaaactta acatcacatg cctctcattg gtgcatttca 2520 ttacttaata tatgattctc atttttaagg ttgcagcagc tttacttctc tctggcaaca 2580 acttcgcgaa aattgaaaaa ttttccaaat tccttggcct ctccttcatc tcagcaagca 2640 cgttctacag ggtccagcgc ctgtatgcta ttcccaccat caatgaatgg tgggaatgga 2700 tgagggaaac aataatcaac accttgcaag aacaggatgt tgtcctcgcc ggggatggac 2760 aatgcgactc gccaggattt tccgcgaaga acctgtgcta ttttcttatg gaaatagtga 2820 ctggttacat tcttgaagtg gaaataatgg acaagcgcca tgtaaatatg aaatctgcaa 2880 ccatggagag gaaggcatta gataatgctc tctctagggt gaagaaagtg ctgtcagtga 2940 cagaagtctg cacggatgcc tcatcttcaa tcaagaaaat gataggtata cacatgtttt 3000 attttaaaag gtgtcttaga taattggtga aaatataata attacatttt gttttggtta 3060 ttttcacccc gtgttcccct gccattttga agctgaaaac caacaatatg tttacccaat 3120 agtatttttt ttacttattt tttttttact tatgagtaac tttttgtttt ccttgatgca 3180 ttttattgag taagaattac aacatttata ttgacctatt gccctgatac caagtggcaa 3240 tggaatgctt acaagggtgg ttgtgaaata tcttactgga gctttttttt agctgaggaa 3300 ttcaagggga tattccattc ccttgatgtg tggcacaagg caaaaagtat aaggaaatgc 3360 cttctcaagg tgcagtaaat gattattatc ttttgtacct caataaataa aataaatata 3420 cataagctaa tatgggaatt attcacgatt ttgatttgta ggtaagcaac accagggaga 3480 atggaaaggt gggtaagtgg acggaccata tcatcaggca cttttggcac tgctgcagcg 3540 tctgcgggga aggcacatcc acagatgagg aggctcttga gaggcttaag gtaagataaa 3600 atagcatgtt ctcatctaac acagagcaca cccttgtaga aacataaaat aattcactat 3660 accttccaag gcccaaaaat atggaactct cccccattat ctgttatgtc cctgtttaat 3720 agaaggcata gacttacaaa cctctcaagc aaattataaa attaaatcat gtatcaagta 3780 tcaatatttt taaattacag aaccaatgga tcagtcttct tcaccatgtg tgcaacaccc 3840 atgaatggcc aactggcaaa tgccaccatg gagatttgcc tgatgagcat gaactccctt 3900 ggtttgacag gcgtgacaaa gacttccaag ctctccagaa agtcatcctt gaaccatcgt 3960 tgcttgacag tttcaagtca tatgttcgtt tcaggtaaca cttattttct ataatcagag 4020 acaatacatg gaatagtcaa gatctatttt tgtctaggtt tacagatttt cctattcaat 4080 atttctgtat agattgttta caggctagag ctgcaataca aacagtagtt tgtagtcatt 4140 ataatctttt cttcatagtt ttttttttat tctacagaca caccggtgcc ctagaatgtg 4200 caaacagcct atcactggca tatgctccca aacggtgtgc tttctcgtaa gtatacttga 4260 tctgttttat tttccttaaa ttttttgtca agattagtgg ccataaagtc tgcagaaaca 4320 acatactgtg aagcagttat ctaaatacca tgtggatcaa tcagaaaata ataataataa 4380 tgataaaaat aataataata ataatatacc aaaatcatta gagtaaataa actttgtatt 4440 ctgaatagat attacatcta gaagattcaa attcatacct ataattttaa aagggattta 4500 gtcacagtta cattaaaaat ttgttttatc tgttataggt atgaagcata taaggcccga 4560 aagcagcttt ctgcaattga ttggaacttc caccaaggta gagagaaagc agtcaatgat 4620 aagggggagc agatggtatc aagaaaatac aatagacgca ctaaagagtg gaatttgaga 4680 ataatcaaag taggcaagac ttatgactac atcccaatgc tgatggccat gattatccga 4740 aaacgattca ctgacattga tggaattacc cggcatgtta gtttagctga agatgaccct 4800 gcccgaatcc aaccaaccct tgcaatggcc aagcctgtta gctctcgtga actgtttcaa 4860 gcacatcagt cgaggttcag acctcctagc acggaaaatg agtgatggaa accagctcat 4920 acaccactta aggttatttt atttggtatt atatatatac atatattcca tttttacaag 4980 agacataatt tgtgatatat aaataaacac ttttgaactg aaaccttcaa agtttgtttt 5040 gttctgacca gagctgctta aaaacaattg ccaagcaatt cagagaaatt ttcaataaga 5100 tgtttttttt tattaccact cagtatactc attgtggcaa attatttaaa ttagctctat 5160 tccactgtgt tgcatggtga aaactaaaag gcagcttaac ccaacaatta ctttagataa 5220 ccctgatgtt gaagcataaa aaatatatct tgtttaaata acagctctca aatagtccaa 5280 tttatgtact tctattatat gggcgaattt caatcagcat aattgcatac acctaataaa 5340 aaaacattgt cagtgcaaat ggcaattgga gaatggaagt ttaaatcaaa tgtaccatgg 5400 tctagttata tttctaccac agtcgaatac cagtttttac caaatacagt atatggataa 5460 ttcgtattaa gctaatgttt ggctctggta ttgccagatt tttttatggc ctttaatttt 5520 ataaataatc agtaccgaaa agcacctttc agtcatagaa ctgtcattcg tcgtttgcac 5580 tgacatctgt ttatctggtt tatcaaaaag ggacgtttat gctaaacctc tctagttctc 5640 tctgaacccc atgtagatcc cagttctagt aggataatga tgtcttattt gccatacaat 5700 gcacgagggg gccactcttc ttcttccctt gccaaggtac ccatgcttgt caaggatgta 5760 gttcctgtag cctgcctttc gaaacgccct tgcactgctg tcgtgccaat cattcctaat 5820 atctgctgat gacctgatac caagcgataa tacctctaca tccaggcaga gcttgccaaa 5880 ccttgctttc gtggactcac aatttctttt accacagcaa acattttcaa tttgctgtgg 5940 catttcacgg caattaccac atttgcacca gtctggtagt ggttcccctg gtggtcttgg 6000 tgctggtgta atgccaacag cagtggggcc ctgtgggtga gtgcttggcc ctgcgacatc 6060 cattggttcc attgcaaggc caagattttc ctcctctctg tcattgtcat catcctccat 6120 gaccagaagg gagtcaatga agtccatgct tccaactcct ctttgcaggc tttttacaca 6180 taggcttttg attgtttcaa aatccagtgt gtctataaat tcctaagtta aagaaagtaa 6240 aatcagcatc atcatccctg gtgggaggga tacacccaat atttttttgg ttatcaattt 6300 cctttacctt tttattgatt tatttgatat gctagttaat aacttgtcaa cagaaatggt 6360 aaaacatgga taaatggagt gtagttcagg aggagactaa agcttatgga tgatgtgaga 6420 tggtttgtta gggttattac actaaaacag cattaaacag cagtgccgta acaggcctta 6480 aaatattggt agggggaggg cacaatacag aaacattaag ataatatttt ggggcaaagc 6540 cacgccccta ctggtcattt acttataatt tttgaaaata ttggggggca cgtgccccag 6600 tgccccaccc cctgctacgg ccctgaacag cacctttact tgccgatttg cctccttcat 6660 ttcttcttcc tctgattttc gtgtcgtcct aggaccagga ccataagtgg aatgaacttc 6720 tcttgttgtc gattcctgta aaaaaaataa tggaagcatg cacttactaa aggattgcag 6780 acagtaagct tacatgaaac acaggggtga cgtatggttt tagaattttc aatatcttcc 6840 gacaaaatta aaagagtaaa taagtcaatg gaatgaatat ggtatgtatt ggagtattgt 6900 gctttctatt ttgatcaccg acgttggaat ccagccaaga taaaagtgta tttttgtaag 6960 aagcgtggcc ttgcaaagta ttgaaaggtc acaagcgaag ctgtctactc tccgtaactt 7020 ttcgaacaac aattccagga gaggaaaata gcataacttt cgtcgtgtgt tttagtaaat 7080 aataattgct taccttattt tggcacggct ttgatcgtgt accgcactta caagaggagt 7140 tgcagtgttt atttgcgcct ttacatgggc aacctcgagc tctcgctccg tcctcaacac 7200 gcttgcgaga gcaagtgctc ttgcaattac aagatgtacg tgcctgcaat agagaattat 7260 tatcattaga aaaactagtg atcctacttc tttaacacga aaacaagaat gcacttttac 7320 cgctctgctc tctgaacgtg agaaattctc atttcttacc tgtacgcttt gtctatcagg 7380 agtccttctt tcgatctcct cctctatgct ttcctccatt ttctaagcca acctcttttt 7440 agttcaataa ttccgtctta ttttaaaaac ctacgaaata acgcgggaaa acagccggcg 7500 acgtaacctc tcaagacctc acgcattgag tgttttgatg ggtttattca ttgttctggt 7560 ccaacgcaca cacttcgatt gttatgctaa ttactcaacg gtcgcctcga ctgcgcatgc 7620 ggaactgctg acaatgcggc t 7641 // ID Gypsy-13-LTR_NV repbase; DNA; NEM; 138 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE LTR of the Starlet sea anemone Gypsy-13_NV autonomous LTR DE Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13-I_NV; KW Gypsy-13-LTR_NV; Gypsy-13_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-138 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-138 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-13_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 458-458 (2007). XX DR [2] (Consensus) XX SQ Sequence 138 BP; 36 A; 27 C; 26 G; 49 T; 0 other; tgttgtagtt ttacttccgg ttaattagca tatctttcgc acatgcgcac ccggattgag 60 ttcctcgtgt agtccgccat gttttgtact gtgttaataa aataggtgaa taaaaagcct 120 tcaagtcaac ttattaca 138 // ID DNA-9-24_NV repbase; DNA; NEM; 202 BP. XX AC . XX DT 24-FEB-2011 (Rel. 16.02, Created) DT 24-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-24_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP485; DNA-9-24_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-202 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-202 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-202 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-24_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (24-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 83-94% identical to the consensus sequence. CC Originally, this family was reported as the NVREP485 unclassified CC DNA transposon [1,2]. The DNA-9-24_NV and DNA-9-23_NV consensus CC seuqences are 75% identical to each other. XX SQ Sequence 202 BP; 46 A; 54 C; 48 G; 54 T; 0 other; tagcctacct gtaggcttta gatgctgttt tcggcgataa aaaccctcga aatctcgaaa 60 tcgtagctcg tggccgccat cttggatccc ggcgcctctc atcttttgtc actcgaatcc 120 aagatggcgg ccacgagcta cgatttcggg tttcgagggt ttttatcgcc gaaaacagca 180 tctaaagcct acaggtaggc ta 202 // ID Kolobok-N16_NV repbase; DNA; NEM; 4537 BP. XX AC . XX DT 29-JUN-2007 (Rel. 12.06, Created) DT 03-JUL-2007 (Rel. 12.06, Last updated, Version 1) XX DE A family of non-autonomous Kolobok transposons - a consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; former NVREP103; Kolobok-N16_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4537 RA Kapitonov V.V. and Jurka J.; RT "Non-autonomous Kolobok transposons in the starlet sea anemone RT genome."; RL Repbase Reports 7(6), 353-353 (2007). XX DR [1] (Consensus) XX CC Kolobok-N16_NV is a consensus sequence of a family of CC non-autonomous Kolobok transposons. The Kolobok-N16_NV transposon CC is characterized by ~1000-bp TIRs and TTAA target site CC duplications. This transposon contains insertions of CC Penelope-5_NV, DNA-5-2_NV, and DNA-7-5_NV elements (they are CC masked out by Ns). This family is composed of ~300 elements that CC are ~3% divergent from the consensus sequence. XX SQ Sequence 4537 BP; 1234 A; 743 C; 754 G; 1215 T; 591 other; gtgcaccagt cccttagatt caactgagga gttccaaata agaaatttca aaatcgctca 60 aaattggttt aaagttagcc cctggttctc ttatcatggt taaaaagttt gagttacata 120 caataaatat ttttcgagaa attccgaatt tacgattttg cctataaaat cgccgatttg 180 ggggcatttt tcacctttcg taaaaaatcg caaaatattc tttaaatata tgcggaatta 240 aaaatagcga tacagatcct tagaaaggag ttgataaggt ataaatcgag tggtttcttt 300 actttttccg gcaaaaaaag gtatatttta ttgctgtcta aacatgtcaa taaaaaatgt 360 cgacttgaat aatagtctaa attaggggct tataaaaccg atggtacatg gattttcgca 420 gaaattttgc actttgagca aagattggtg ttatttcttt cgattcagca aataaaaaat 480 tgggggaatc aaattcccga attataatga agccgaacgc aaccccatgt cgagctcaaa 540 taacacgcga ttttcttgac agccgtcttt attagataca catacctgtt tgtacgggag 600 acaaatcaca gaaaataaac tctatccttg ctgtatacta attttagatg ctgtataata 660 gtcttggttc atccttggaa gttactggaa gtcaataaag acattacaat gaaaaatatt 720 tgctattttg tacagacttc agttcagaac gcctgccgga atggcaaact ttgaaggatt 780 tgtttgggtt ttaaagtttc tttacgcttc attgaagtaa aagatattca agcacgtcag 840 ttcttacctt ctgccaagag gtttctaggg aaaaggccga tttgtaagat taatttcaat 900 gcaaaggtca agtacttgaa cacgagtctg gtttcagatg acaacaactg atcagcggtc 960 tgccagatga gaatgcgtga ctttccacag gtatcctaat ccccataaga acagacagtt 1020 ttgagtccta gtctttcttt attagaaaac catatttgat aaaaagtcga tatcatgtct 1080 tgtttgtcta ttttcaaaaa catctgatga tttggtaaag aacttaggcg taagagtaaa 1140 aattgtatac gtatttacgt ttatctgcat attagttgtg tgcgcatgag cactgcttga 1200 ttactgctga aatttttatc aataatggga gcgggtctct gtaaaatgaa gaccggacct 1260 tcacggacct acgcggacca gacctcggcg gaccgggtta tttttatttt atttattttt 1320 aaatacacaa acatatnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1380 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1440 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1560 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncattttgcg tgggagtccc tagggyaagt 1620 gtgccgttgt tgckggkcgc cggtgggaca gagtttcttt ttcattacgg actttgcgca 1680 aaattccgac ttgctccagg tgactgaagt agtttgaaaa atcggtagct ggaaaatcgg 1740 caactaccgt gagaatagtg actttaaatg ggctgcttcg ctactttgta gcaagagaaa 1800 acaaatatca ctctgtccaa ccactgagct gtcagttaac tcaatgtaaa ctgttgattg 1860 ccgttagaac agtaaccctc tatgggctac ttccctgcat tgtattaaga aaaaaacaaa 1920 agccgctctg cacaagcaca atcgtagatt gccgtgagaa cagtaacttg ttattggcta 1980 ctttgcttga tataacaaga ccaacaactg tgcaatgcca acaagactgc ctggaaaagg 2040 gttacaaaat cagttggagc ttgcgacaga ttgaatgaac atgtctatga ttccgataca 2100 gacgacgatc tactccccgt gtttgagggg taaaataata ctttcgctaa acgaaagata 2160 taatgctaat tgacattgtt ttaatgcgag ggatgtttta gcctgtgagc aagtctgtac 2220 ttttgcgcaa agtccgtaat gaaaaagaaa tctccgtcgc atatcccccc cccccccaca 2280 cacacacaca acatcggcac acacataaac taatatcaga atataaggaa agcagaggtg 2340 cgcgataaag aagtcgagtc taccaaacgg gaagttgagt tgaaataggg actccccaaa 2400 atatgttcag agaacaagca aaatgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2460 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2520 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2580 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2640 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2700 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnat 2760 tacatttgcg tttcaagagt cacctacgcg cgcgcttaac aaatactccg gtcgttaaat 2820 catgattcac ttaccagctc tagcaagaag aagttcaaac tcagtttgaa gagacttgtc 2880 tgatatgtta agcagcttct tgtgtccacg aatatccttg ttacagtctt tcagaagaac 2940 gcactttgaa ttgctcgagc aatcgacact agggccacaa ggaccaccca cgcaaacagc 3000 gtaatcacag gtagtcatga tcaagaaaaa tatcaagcat catctgattt acaattctat 3060 gcttgcctga ttttataaga agcagattaa tgtgatctct ttgtgttgcc ctaaagcctt 3120 ttgtggctaa cggaggtgtt actgtaacag gatgccgctt tgagggagtg tgacaattct 3180 tccagcttat gcccttatgt caacgaagca tgtttgcttg tggtatttgt gttttattct 3240 tcgattggtg tttcctatct agaattacgc tttcacaaca taggcgagcc agctgagaag 3300 agatatctca tactttcggg tgatgtcctg ctgcaagaga ccatgataca tcatggtctc 3360 ttgcctgctg tgagtgacac gataatgtca agtatcgcat acgcatatac atatcccata 3420 ttaattttta aaataatttt ggcatcatta atatgttttt ttttagaatg aagaacataa 3480 aataagaaac aatctaaaat aaaaactgca agccgactag ttgaactatt ctttatatcg 3540 ggtttccttt ggaaattcac gcattctcat ctggtagacc gctgatcagt tgttgtcatc 3600 tgaaaccaga ctcgtgttca agtacttgac ctttgcattg aaattaatct tacaaatcgg 3660 cctttttccc agaaacctct tggcagaagg taagaactga cgtgcttgaa tatcttttac 3720 ttcaattgag cgtaaagaaa ctttaaaacc caaacaaatc cttcaaagtt tgccattccg 3780 gcaggcgttc tgaactgaag tctgtacaaa atagcaaata tttttcattg taatgtcttt 3840 attgacttcc agtaacttcc aaggatgaac caagacaatt atacagcatc tgagattagt 3900 atacagcaag ggtagagttt attttctgtg atttgtctcc tgtacaaaca ggtatgtgta 3960 tctaataaag acggctgtca agaaaatcgc gtgttatttg agctcgacat ggggttgcgt 4020 tcggcttcat tataattcgg gaatttgatt cccccaattt tttatttgct gaatcgaaag 4080 aaataacacc aatgtttgct caaagtgcaa aatttctgcg aaaatccatg taccatcggt 4140 tttataagcc ccaaatttaa gctattattc aagtcgacat tttttattga catgtttaga 4200 cagcaataaa atataccttt tttttgccgg aaaaagtaaa gaaaccactc gatttatacc 4260 ttatcaactc ctttctaagg atctgtatcg ctatttttaa ttccgcgtat atttaaagaa 4320 tattttgcga ttttttacga aaggtgaaaa atgcccccaa atcggcgatt ttataggcaa 4380 aatcgtaaat tcggaatttc tcgaaaaata tttattgtat gtaactcaaa ctttttaacc 4440 atgataagag aaccaggggc taactttaaa ccaattttga gcgattttga aatttcttat 4500 ttggaactcc tcagttgaat ctaagggact ggtgcac 4537 // ID DNA-5-6_NV repbase; DNA; NEM; 162 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-6_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-162 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-162 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-162 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 162 BP; 33 A; 52 C; 41 G; 36 T; 0 other; caggcgcgta cacagggggg tgcgcagggt gcgcgcgcac cccccttggc ggccaaaaag 60 tgggtcattt cttattaagg aatcttcaaa tactatgctt tttccatatg atacctatga 120 ctgcgcaccc ccccccctca gccaatcctg ggtacgcgcc tg 162 // ID DNA-9-22A_NV repbase; DNA; NEM; 1410 BP. XX AC . XX DT 23-FEB-2011 (Rel. 16.02, Created) DT 23-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-9-22A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP119; DNA-9-22A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1410 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1410 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1410 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-22A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Originally, this family was reported as the NVREP119 unclassified CC DNA transposon [1,2]. XX SQ Sequence 1410 BP; 488 A; 237 C; 255 G; 427 T; 3 other; accgcggtga tcctagttcc taattcctca gttcctagtc agttcctaat cggggtcagg 60 ggggtacttc ataaaaaaat gctaaaatgg taaaaatacc tcatttaccg agtaaaatca 120 gctagaatcg atggaaaggc attataaata tgatttctaa aattatttac agcaattttt 180 gtggattcta gactaatgtc tagtagaatc tagacattga ctagacttgt ctggtttcta 240 gtttagacga ttgcaatttt ctatgtaata cacaaggaaa tagctataat atgactacaa 300 aaggaagaat atcatgtgtt tctataacgt ttctataccg atttagcgct tatttattgc 360 taacttttca aacagtaaac gtttactttg tactttttgg cgccaacaat gaatgttgtc 420 aacggtgaag accacccaag tagaagtcac gcttggatca cgcgcttggt agtcacgcta 480 gctacaccaa taactaactg cgctacatct aaattacgga tagtaaaata gaaactggac 540 ctgaagtgac cgggatataa tttgaatcat ccgaaagaag gggatttttt tyaaatttat 600 caaaattmat agagatttgc atcatttttt agaccagttt ctaatcggtt tctactcgtg 660 accggaagta gaaactggtt cctaattata gaaaatactt tcaaaccttt cacacgcact 720 ttaatgcaca acacatagta taatacaact gagtaaaaaa atcaggggta cgaatttgga 780 tttgtttgta caaatagaaa cgaggtagga aaattttatt ttttactgaa gtaggaactg 840 attacgagtt gttgcgtaat taagtaggat ctgaaaacgc gtgtttcgta aatagaattc 900 ttactattag gaaccggaca atcaaagaaa aactgcactg gaattgacag gaatctataa 960 aatcatccga aagaagggga attatttctt aaaattcata gagatttgca tgatttttag 1020 accagtttct aatcggtttc tactcgtgac cggaagtaga aactggttcc taattataga 1080 aaaagccaca acacatagta taatacaact gagkaaaaaa tcaggggtac aaatttggat 1140 ttgtttgtac aaataggatc gccttttgaa tgttttgcac tagtaataac tcaaatagaa 1200 atttagcata aatccgctaa atagcgcaaa aatcgatgta aaaaataatg ttggcgtata 1260 ttccagccgt actctccaat tctatacaga aaatagataa tttcgatttt ttttgttatt 1320 gaaaaattac cccccccccc ccttaccatt aggaactgag taggaactga ctaggaacca 1380 agaagtttta ggaaccagga tcaccgcggt 1410 // ID DNA-5-10_NV repbase; DNA; NEM; 180 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-5-10_NV non-autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; nonautonomous; KW DNA-5-10_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-180 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-180 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-180 RA Kapitonov V. and Jurka J.; RT "A family of DNA-5-10_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 180 BP; 48 A; 50 C; 54 G; 28 T; 0 other; caggcccgta gccagggggg gttcgggggg ttcggaagaa ccaccccact cgactggaag 60 gtccgctcta atgaaggaaa attgagtacc actgcaagct agggcgagct acctaagaga 120 aaatggtccg ctaaatgggt aaacgaaccc cccccgctca aaatcctggc tacgggcctg 180 // ID DNA-TA-3_NV repbase; DNA; NEM; 300 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-3_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-300 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-300 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-300 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-3_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 300 BP; 89 A; 69 C; 69 G; 73 T; 0 other; ctgtcgaatc cgttgtatcg cgacccgcgt tttcaaaaca cgatttgttt tggttttctg 60 ttccgtcagt aaaaccattc tgagccaatc agagtctcgc tttgtgcact tccctggcta 120 tcctctggac gaaaaccaga cagtgtcgcg acagaaagcc aggcaactgc actaggcgag 180 agatggcaag aatctgattg gcttagaata atttgactgg cggaacagaa aatcccaaaa 240 gacaaaaaca aatcgatgtt ttgaaaatgc ggcgtcgcga tacaacggat tcgacagtaa 300 // ID Gypsy-43-I_NV repbase; DNA; NEM; 4254 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-43_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43-I_NV; KW Gypsy-43-LTR_NV; Gypsy-43_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4254 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4254 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-43_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 519-519 (2007). XX DR [2] (Consensus) XX SQ Sequence 4254 BP; 1369 A; 1034 C; 964 G; 887 T; 0 other; tggctgtcag tagcgggatc ttctagaagt cacagactgg aaggagaaag aaaaacgtga 60 gtttattcca atcgttcttt ggtacaagcc agcgaaatga gcgatttgat cggatttgaa 120 actcccaaaa tagactggac cacgagcccc gacattgaat tgaagttcaa acgttttcgc 180 cagaaatgtg aattattatt tgacgggccg ctaaaacaga ggtcggagga acagaagtgt 240 agatatttac tcctctggac gggagattat ggccttgact tgtttaatac atggaatttg 300 agcacagaag aggcgaacaa attggccgaa tattggaagc gtttcgaaga gcacgtgaaa 360 ccacaatcca accacttact aaatcgattt tacctaagat ccctgaaaca aaacaacagg 420 ccgctagacg aattccttac tgaggcaaaa ctacttatcc agaatagtgg ttttcccacc 480 gacttacacg atgagctaat gcgagattct cttgtttttg gagccgactc cgacgcggta 540 cgaaagaagt gcatcgccga aggaaattcc ctctccttca agagagccag ggaaatcgcc 600 cacactgagg aggcgacacg gctacaaatg aacgccatga gcaaccccca gaatcagaga 660 gaggtaaact ccatccagaa caacaacaaa gctagaaagc aacgaaaagg taaaacccac 720 ccagtaaata gatccaacaa gaagcctggt gatgaaaagg gcgcatccgc tcagcaccat 780 acaccagata aatgtgaaag atgtggaaat acaccccaca aaaagggcca gaaatgccca 840 gctattgatt cagagtgctt tgcctgccac aaaactggac atttcagcac atgtgcttca 900 cacccaaaaa aaatttgtcc attcacttga tgatgaaaat tgtgatgaaa gagttttctt 960 aggaactcta gtggcagaaa ccagcactaa tgaaaatagc ccaagcggaa ttgaaagcat 1020 cttccagcta gaaaaccgca accgtgtaac gacggaattg cagttcactt ccaaaccaca 1080 ccacaagaat accaccccta ttgtatgtag aattgatact ggcgcagaac tcaatgtcat 1140 tgcaaagaag gacattgagt gccttttccc gaaaaaaaaa agacagctgg agaaacctgg 1200 ctgcaaaatc atatcctacg gtggacatga aatctcgaac ctggggcagt gtcaattgta 1260 tgtgcaccac aagggtcaag ttaaagaaat aacattcaat gttactgaag tatcaggtcc 1320 tgccataatt ggctgcaaga catgtgatga tctcgagcta gtgaagtaca accttaacct 1380 tgacaaagcc cccaaggccc aatcccatag tcaacatgac aacatgcaca ccccactcac 1440 taagggaaaa ttagtgaaca gctacaaaga tcgttttgag ggactgggag catttaaaat 1500 gagaccatat cacatcacct tagaggaggg tgcagaacct gttatccacc cacccaggtc 1560 ggtaccagtc cacctccgtg aattgtacaa gcaagaaatc gacaagatgc ttgaagcagg 1620 tatcatagaa cctgtggaca cacccacaga ctgggtgaat agcattgtgt tgacagagac 1680 aaccaatgac aagggggaga tcacaaagat ccgagtctgc ctggaccccc gggacttgaa 1740 taagtggatc aagagagaac accactacac caagacggtt gacgaagtag tgacacaact 1800 aagtgacgcc aagtacttca ccttgatcga tgcaaacaaa agggtactgg cacgttcccc 1860 tggacaacga aagttcatac ctcacaacgt ttggaacacc atttggaagg ttcaagtttt 1920 ccagactccc atttggactg gtagtatcgc aggatatttt ccaacgacaa ctcgattcag 1980 cccttgaagg cctgaatggc gtgaccggca ttgccgatga catattcgtg tatgggtcca 2040 ctgaagagga gcatgaccga aacctgacag acctcatgga gagagcccaa gagaagggga 2100 ttgtgttcaa tgctgaaaag cttcagttca agtgcaatga agttagtttt ttcggacaca 2160 catggagtcc ggaaggggtc cgcccagaca aaaaggtgtc tgcgatccta gacatggaag 2220 cacccaaaga cactaagaac cttcagagct tcttaggctt agtcaactac ctcacaaggt 2280 attcagggca actcgccacc ttgacagcac ccttacgaga gctcacaaag aaggaaagtg 2340 tattcttatg gggacccgaa cacgatgaag cattcaagaa ggtgaaggaa gagatatcat 2400 ccctaggagt acttcgatat ttcgacccta aggaagagac agtcatacag acagatgcat 2460 ctctgaaagg tgttggcgct gtcctcctac aaggtggaca acctgtctgc tacgcgtcca 2520 aggcgctcac agagactgag cagaactata gtaacataga gcgcgaggct ctcggggtag 2580 tatggggact agagaggttc cactacttca tttatggaaa gcaatgtaca gttaacactg 2640 accataaacc ccttgagtcc attttcaaaa agaaactaac ctcatgtcct gctcgtttac 2700 agaggttcgt attgagggca ctcaagtacg acgtcactgt caagtacgtc aaagggtctg 2760 atgtcccaat tgctgatgca ttatccagac tgtcacctca accggcaccg cccaagggac 2820 agctacccca gttaagtatc caccaggtga ctgacacact gccagcctca ccagcaaaat 2880 tgcagcaaat cagagacctg accactagtg acccaaccct aagccaactc agagacacca 2940 tctgcaaagg atggccagag tctagagaaa agtgtcccag tatgctctat gattactgga 3000 atttcagaga agaattgaca atagaagatg gccttgtcct caagggagag aggattgtta 3060 taccacctac cctgagacca gagatcttgg ataccctaca caagggacac ctgggccagg 3120 agaagtgcct cttgagagcc cgcaccactg tgttttggcc aggaatcacc aaggatgttg 3180 taaaccttgt gaagacctgc gaggcatgtc aaaagcacca acgacacaac cagaagcaac 3240 caatcttaca gccagaacca ccgagttacc cctggcagaa ggtgagctct gacctattcg 3300 attacaaagg gaaaacatac ttgcttgtag cagaccagta cagtaagttc ccgataatca 3360 gaaagttagg aagtgccgtg gggagcacca cctcacttgt tgttatcaac cacttgaaga 3420 gcatattctc agagcatggt atcccagcac aactgctctc agatggagga ccacagtata 3480 gctcaaagga gtttgaggac tttgtaacca cctatggtat tgagcacact ctaagctcac 3540 cgcattacgc acaatcaaat ggcttcggtg aacgaatggt acagacggta aaacaaattc 3600 tgacgaaatg cgaagagaaa aatgaagacc cttaccttgg tctactgtcc taccggacaa 3660 caccagttga ccataacctg aagtcgccag ctgagttgct gacaaaccgg aagttcagaa 3720 caacacttcc aatggcacag agggcatccc tcaccagaga tgggagcgat gttaaggaaa 3780 ccctctacag acgccagaca acccaggaac agaattacaa ccgcactgca ggaccaagtc 3840 tgacaccatt tgaacctgga cagcctgtac gtatgttcga ccaccactca aagacatggc 3900 aaaaggctac agtagtcaag cctgctaagg agccgcgctc gtacatagtg cgtaaccagg 3960 aaactgaagg agtgtatcgc cgcacaaggt ctcagctaag acctcatcac cacttcgcgc 4020 cagatgaaag tcttactgcc ccgacgcctg atgttcctac accggtcgac atcccagatg 4080 ccgcaaccca tgcgattggt ccaacagcta ctggatacac cacaagatct gggagaccag 4140 ttagagcccc agacagattg gacatttaaa tgaacactga tcacacgtta tatgttaata 4200 gagatttatt atcgttgatg ttgttaagct ctttaaacat tataaagagg ggga 4254 // ID MSAT1-MAR1_NV repbase; DNA; NEM; 53 BP. XX AC . XX DT 14-FEB-2011 (Rel. 16.02, Created) DT 14-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone MSAT1-MAR1_NV minisatellite DNA - consensus. XX KW MSAT; Satellite; Simple Repeat; MSAT1-MAR1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-53 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-53 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-53 RA Kapitonov V. and Jurka J.; RT "Families of minisatellite DNA derived from the Mariner-1_NV RT transposon in th starlet sea anemone genome."; RL Direct Submission to Repbase Update (14-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 53 BP; 7 A; 6 C; 19 G; 21 T; 0 other; tatgtttgtt atgtggtggt cccgagggtg tccgttatat ggaggttgta ctg 53 // ID DNA-TA-26A_NV repbase; DNA; NEM; 480 BP. XX AC . XX DT 17-MAR-2011 (Rel. 16.03, Created) DT 17-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-TA-26A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TA TSD; KW DNA-TTA-1_NV; DNA-TA-26A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-480 RA Kapitonov V. and Jurka J.; RT "A family of DNA-26A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (17-MAR-2011). XX DR [1] (Consensus) XX CC This is small subfamily of DNA-TA-26_NV. It was derived from CC DNA-TA-26_NV by inserion of DNA-TTA-1_NV into it (pos. 125 in the CC DNA-TA-26_NV consensus). XX SQ Sequence 480 BP; 125 A; 107 C; 103 G; 145 T; 0 other; cagtcgattg acaaaaggtt gtcgtcaacc ggcttcgcga ctacgcgaca agcccgcatg 60 taagcatggg taaaaaccac tgaagcgcct agctgcatat attagccacc gcataacttc 120 agactaatgc tgcattcaca ccaaaaccat gtttagttaa acaaggtttt tctttgcctg 180 ataacttgcc aagtttctca ttgtgttgaa ttcttactag ctaaatgatc acttagtaac 240 atgtacagca cagtctattc agttttgttc ttggttctgt ccactcttgg gagattgaga 300 tttaaaccag tttaattaaa ccacctttaa actggtttaa gtgctggtgt gaatgcggta 360 ttagacgctg cggtggctaa tatatcagct aggcgcttca gtggttttta cccatgctta 420 catgcgggct tgtcgcgtag tcgcgaagcc ggttgacgac aaccttttgt caaacgactg 480 // ID RTE-3_NV repbase; DNA; NEM; 4039 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone RTE-3_NV autonomous Non-LTR Retrotransposon - DE consensus. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4039 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4039 RA Kapitonov V.V. and Jurka J.; RT "RTE-3_NV - a family of autonomous Non-LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 657-657 (2007). XX DR [2] (Consensus) XX SQ Sequence 4039 BP; 1092 A; 1094 C; 992 G; 861 T; 0 other; gggtgcttag ggtgactact ccccacggct ctggtcacct aattcctgta taactacctt 60 cacgtggtgc acctgtctta gacaaaatgt tataccaggg accgaaccag ggacggtata 120 ttcccttctg ggcagatgga gcctgttagc cttggtaggc aatccatcta gggatttgct 180 cacccgagtc acagaaaaga ctgctatggc ggatcaggca gaagatgccc actttgggtt 240 aaatggctga gaaggcgttg cagcaaggca ccgtggaatg cttagggcgt gacagagcac 300 taaagacgtc acggccatca cactgcggcc aaggaggtca ccagccgtga cgactcttcg 360 taccactgga ttctggcttc tgcggcagag agagtgggat tgcccctgtg caacggcttt 420 tccactataa tatctttctc gcacaggttt cgttgtactt tcatcttatt atctttcttc 480 atcttacttc ttcaataagc cctacggcga tgggggattg gcgaaagcaa caggtggagg 540 tgaacactgg gagttgtagt caaaaacctg cacgtaggcg gccatggaca gatggtcgct 600 ctttttctgt acccagggca gcagacaagt tcggcagcat ccatggcgac tgagcagccc 660 tcttcaggac agcactgctc accctagtga gggagggacc tagaaaaggt ggtctaaaca 720 ttgcctgccc tactgcatct ggccagcaag ccgcggctgg cagatcatcc atctatgcgg 780 tcgaagcgat agaagaaaaa ataaactact cttaggagca tggaatgtcc gtacccttat 840 ggacagagga atcataagac cccaaaggag aacagctcta gttgccaaag aactagcacg 900 ctacaacatc gacatcgcag ctttgagcga gacccgcctc gccgatgaag gttctcttac 960 agaacagacc agcggttaca ctttcttttg gaaagggaag gccgcacacg aagacaggat 1020 ccacggggtt ggactggcta ttaggacaag tctactgaaa gaacttccag acttacctac 1080 aggtgtcaac gaaaggctga tgaagttacg tctacctctc tgttacaagc gctatgcaac 1140 aatcatcagc gcatatgctc ccaccctcac gagcccagag gagacaatcg agcagtttta 1200 tgacgacctc agttccatcc tgagctctgt tcccgccggt gataagatca tcctgctcgg 1260 agacttaaac gcccgagttg gtcgggacta cgaacgatgg gatggagtgc taggaagaca 1320 cggcgttggc aagatgaata acaacggcct cctactgtta agcaagtgtg cggagtacga 1380 tctggtcatc accaacactg tgttcagaat ggcagacaag ttcaagacga cctggatgca 1440 tccaagatca aaacagtggc atctcataga ctttgttatc gtccgccagc gtgacatcca 1500 ggatgtccac gtcaccagag ccatgcgagg agcggaatgc tggacagatc accgcctagt 1560 ccgctgcact ctgaaacttc acattgcgcc acgtcaccca aagcgtccaa agcttgtgcg 1620 cacgcccttc aacacagcca gactccaaca gccttcctac ctacagaagt tccagaacag 1680 cctgaatgag aagctgactg caaacgggcc tttgtctgga gatccaaagg agaagtggaa 1740 ccagttcaga gatgtagtca ccgagacagc aaagacagct cttggcccaa agacgcggaa 1800 acaccaggat tggttcgacg agaacaacga agcaattgaa aatctacttg ccagaaagaa 1860 caaggcattc atggaatggc aaaacgatcc gagctccgct gcaaagaaag acagatttaa 1920 gtccttacag tacttggctc agcaggaaat aagaacgatg cgtgaccagt ggtgggagaa 1980 gaaggccgaa gagattcaag gctttgcaga ctctaacaac tcgaaacatt tctttagctc 2040 cctcaaaaca gtctacggtc catcgaaatc tggttccgct cccttgctgt cagcagacgg 2100 agccacgctc atcaaggaca aaactgcaat caacatgagg tggagggaac actttagtca 2160 acttctcaat cgcccgtcgt cagtagacca gtctgcactt gaccaaatcc ctcaacagct 2220 actaatcgag gaactcagcg atcccccatc catggaggaa ctcacgaagg ccatcaagca 2280 aatgtcatct gggaaagctg caggcaagga cggtatacca gcggaggtat acaaggccct 2340 tagcgatgag gccctgcacg cttttcacag cgtcctgatc agcatctggg acgaggaagt 2400 aatgcctgcc gacctacgtg atgcatcaat agtcgccctg tacaagaaca aaggcactcg 2460 cacagtgtgc gaaaatcaca ggggtatatc ccttctcaca atcgccggaa aaatcctcgc 2520 ccgcatcatg ctgaacaggc tgattccatc cgttgcagag aaaaacctcc ctgagtcaca 2580 gtgcggcttc cgccctggta gatgcacagt tgacatggta tttacagtaa gacagatcca 2640 ggagaagtgc cttgagcaga atatgaacct ctacgcagtc ttcatcgacc tcaccaaagc 2700 tttcgacacc gtcaaccgcg aagcattgtg gattatcctc agtaagcttg gatgccctgc 2760 aaagtttaca accttgatta ggctgttcca cgacgacatg acgggtgaag tcctgtccga 2820 tggtgagccc tctgagagct tcagtatctc caacggtgtg aaacaaggct gtgtgcttgc 2880 tccagtgttg ttcaatctct tcttcaccca ggtactgctt cacgctgtgc gagaccttga 2940 ccttggtgtc tacatcaggt accggctgga cggctcactg tttgacctgc gacgtcttac 3000 ggccaagaca aagaccatgg aaaggcttat acttgatgcc ctgttcgccg acgactgcgc 3060 gctgatggct caccaggaga atcatctaca gactatcgtg gacaagttct ctgaagcatc 3120 aaagttgttc ggtctgaaaa tcagtcttag taagacggaa gttctccttc aacccgcacc 3180 agacagtatc ccccagcagc catgcataac catcgatggc acacagctga agaatgtcga 3240 ctcattcgtg tacctgggca gcaccatctc caacgacaac acactggaca aagagattgc 3300 ggccaggatc cagaaagcga gccatgcatt gggaaaactc cgtaccaaag tcttacaaca 3360 tcaggacatt cgcctgtcaa caaagctgaa ggtttataat gctatcgtcc tcccgtcact 3420 actatacggc tgcgagactt ggacccttta ctgtagacat atcaagaagc tggagcgatt 3480 ccacacacgc tctctgcggg caatcatgcg catacgctgg caggaccgca ttacaaacct 3540 cgaagtccta gacagagctg acaccacaag cattgaagcc aagatactcc aagcccagct 3600 tcgttggtct ggccacgtca ttcgcatgga ggagtcaaga attccacggc aggtgcttta 3660 cagtgagcta gcgtctggtt accgcaagaa gggtcgccca aagaagaggt acaaagacaa 3720 cctcaaatcc aacctcaaat ggacaagtct cctacctcga cagctcgagg cggcggcgtc 3780 caatagaact tgctggcgtg ccctcacaag taatgcggtg cagtcctttg agggtgaccg 3840 tcgtagtcgc cttacggctg cacgtcaccg gcgtcaccga gctgcttctg cctctgtccc 3900 gacaactggc gtcccatgcc ccatctgcaa ccgcatctgt gcatcggact ttggtctgcg 3960 tagccacatg cgtgtccaca aataagatga gattcaacgt atcgtcttcc tcggctcgag 4020 agacaaccat gatgatgat 4039 // ID SINE2-1_NV repbase; DNA; NEM; 268 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Starlet sea anemone SINE2-1_NV non-autonomous non-LTR DE retrotransposon - consensus. XX KW SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; KW TE3-1_NV; SINE2-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-268 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-268 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-268 RA Kapitonov V. and Jurka J.; RT "A family of SINE2-1_NV non-LTR retrotransposons from the starlet RT sea anemone genome."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [3] (Consensus) XX CC The pol-III region was derived from tRNA. This family was CC classified originally as the TE3-1_NV transposable element [1-2]. XX SQ Sequence 268 BP; 63 A; 50 C; 66 G; 89 T; 0 other; tggaatcacg ggtggcccag tgtgttagcg cgtcagcgta tggggcctct cacctctgct 60 gaaacgggtt cgattcccgg tcgagacatg gatagtatct ttctgtttct cggccctgaa 120 tttgacttgt tgaacgtatg tgagcttact agaagcttgt gttcctcagt tccaagatgg 180 gacattctta atacattagg attttaaatg tgaagcgctt agaacatggt tggtataagc 240 gctatataaa tgctatatta ttattatt 268 // ID hAT-11_NV repbase; DNA; NEM; 1368 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Starlet sea anemone hAT-11_NV autonomous DNA transposon - DE consensus. XX KW hAT; DNA transposon; Transposable Element; hAT-11_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1368 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1368 RA Kapitonov V.V. and Jurka J.; RT "hAT-11_NV - a family of autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 7(7), 585-585 (2007). XX DR [2] (Consensus) XX CC Terminal portions of the transposon are not known. The genome CC contains only a few copies of the transposon. XX SQ Sequence 1368 BP; 412 A; 246 C; 303 G; 407 T; 0 other; cagaatcttt ccattgtgat aaggtttctt gattcaacaa aaataatcag aaaagagttt 60 attgggtact ctctttatga ggagggtaca tcaggggcag ctatcaaaga tttgatactt 120 aaagcagttg taaatttggg gctcagcatg aatgattgtc gtggccaatg ctatgatggg 180 gctggaaata tggcaggtag attaaatggg gcatcctccc taattatggt tgagcatgag 240 aaggtaatct atgttcattg tatgaactat agaatgaatt tgtgtattgc aaacacgttt 300 gagctgccaa tggtcagaaa tatgatgggt tttgtaagga aaatattaga ttttttcaat 360 aacttacccc agcgccagaa ccacttgatt tttaagataa gagtgatgat gtctgaagca 420 aaccatactg ttttgattga cgtgtgtagg accaggtagt tagagcgcat tgatgggatg 480 gacaggattg ttgagctgtt ctcccctgtc gtggccacgt tcgaagacat ctctttgaat 540 caaaatgccc ccaataatgg cgtttggaat ccatccagtc gaactgatgc tcaaacattg 600 ataaaagctg tctcttgttt ttcattgtca ccttagttgt tgtgaaatat atcttaggct 660 taactaggcc tctctaagat gcagaaaaaa gcaatggatt tgctcaaagc gaaggatgag 720 cttgcattac tcaaatctgt tctagaagaa atgtaaaatg agattgatgt tagtcatcat 780 gacctctttg aagaagctgt tgctctagct aggcatgtct cagtcgaacc gagcaagaat 840 agcccagaga caggtgcata gaaacaatac ccctgcagat acaccagaaa tctactaaaa 900 gagaaatctt acaagagttt tccttgacca tgttctacag cagctagata gtagatttca 960 agatgaggtt tttatttgtt ataagggact ttatgtaatc ccatcatttt ttttggcaga 1020 gaaccatgct tggaaggata atgttcttcg caattttgtc agttttacag acatgatctc 1080 cctaactatg ctggtttagg cgcagaaatg ttgctttggg agagactctg aaagggacta 1140 aatgatggag gggaagtcat ccctgacaac atagctgggg ctctttcagt agtagacaag 1200 gatgcttatg caaatatata taccataatg cagatcctct acaccatccc catttcttca 1260 gcatcctgcg aaaggtcttt ttccactttt agaaatctcg aaaactacct caggagcaca 1320 atggcccagg acagacttga tggtttggca ttgatacatg cacacaga 1368 // ID Gypsy-17-I_NV repbase; DNA; NEM; 4133 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-17_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17-I_NV; KW Gypsy-17-LTR_NV; Gypsy-17_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4133 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4133 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-17_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 463-463 (2007). XX DR [2] (Consensus) XX SQ Sequence 4133 BP; 1210 A; 774 C; 1121 G; 1028 T; 0 other; ttggcgacga ggatctgacg agaaatttta tgagatggct caacagatgg ttcagagcat 60 tccggtcccg acctatacag gggtggggga catcgaaggg tatatcgagc gcttagagtg 120 ctacttcgag ctgatgaaga ctcgcacaga gagtagagtc cctctgttgc tgtgtggtct 180 gacggcaggt cagtaccaaa cgttgagaga cctggtggct cccgaggttc caaaagaagt 240 ggcgtacgac acgctcaaag ggagactaat cgagcactat ggttctgtga ggaacactcg 300 tttagaaaga gcaaagtttc gggctcttag aagagacgag aaggagagcg tagctgattt 360 cgaggtgcga ctacgtaacg cggtacggta ttgtgagttt accggagaaa ttcttaacga 420 gaatctggtg gaacagttta tctctgggat aaaccaccca gggattgaac gaaaacttct 480 ccaaaagggg agttcgttaa aactctcgga ggccgtacaa gaggcaagcg cattcctttt 540 gcttgatgca aaaagcggac gtgagggcca gagcgacaca cccgtctccg tgtcggcgat 600 ctcaaaggga aatgcggttg tgtgcttccg ttgcgggaag agagggcatg ttgcccgtga 660 taagagttgc aaggccgttg gcaagaaatg taacgactgt ggcgtcgtcg gacattttgc 720 gaagagcaaa ttctgccggc tagtaagacc agaaaataac tcccagtcgt cacgcgttag 780 gaacggcagc cgttcgcgac gtggaggccg tgcaaaccag atcaccgatg agcacgccga 840 taccaaacag gaaaaggcgg taacacattt gttttccgta gaggttagaa acgtaaagga 900 agcgcccacg tgcgaggcag agattagggg tatggtattt aattttatca ttgattcagg 960 agctgccgct aacatagttt ctaatcaatt gtataataag atcaaacgtg atgtggtact 1020 taggaagact accaaaaagt tatttgcttt tgggcaatcg gtgcctttga aattgaaagg 1080 agagtttgaa gcggaaatta ctgtaaatga taacaaagct ctcgctattt tttacgtgtt 1140 taatggaaaa gcatctgtca acaatttgat aagtaacaaa accgctaatg agttacgatt 1200 acttcatgtc aattccgtca caggtcaaaa gtgtcacgcc agtctagaga cggaaattaa 1260 gtcgaagttt actcagtgtt tcgatggggt gggtaaactt aagggtacta aggttaagat 1320 acatgtagac cctgatcgtg agcctgtagc gcaaccggtg cgcagattgc ctttcggata 1380 ccgagataaa gtggcaactt tgctggaaag gctggaagcc gaagatatca tagagtcggt 1440 agagggggtt ggttcacgtt gggtaagccc tattgttgta gttcccaaat cggacggtga 1500 tttgcgaatg tgtattgact tcaggaaggt caatgaagca ataattcggg agaggtaccc 1560 cattcccact atgcaggaaa tgctagcagc attgaacggg tccaaggtat tttctaagtt 1620 agatttaaag caaggatttt ttcagctaga gttggacaaa gaatctcgcg aaatcacgac 1680 ctttgttact catgtgggtt tattcagaat gaaaaggctt ggtatgggga tttcatgcgc 1740 tcctgagttg tttcagtaca caattcagaa ggttcttgca gggttacctg gagtgttaaa 1800 cttagctgac gatattgttg ttttcggtaa agacgaacgc caacacaaag agcgtttatt 1860 gagtgttatg tcacgtttgt cggaaagcgg gttgacactc aatccaggta agtgtcagtt 1920 cggattaagt tcgatcacgt ttttagggca tgttatctct gacaacgggg tatcagccga 1980 cccaggtaag gtcgaggcaa tagtaaacgc ccgggcccca atgaatgtgt cagaattaag 2040 gggattccta ggtctggtac agtatgtcgg tcgttacatt ccggatctag ccaccctgtc 2100 cgctccactt agagcattaa cgcgccaatc ggttccattt gaatggaccc agaaacagga 2160 agatagtttt cgcgacatca aaaggctgat gagtgctagt gagacgttag catattttga 2220 tagagagagc gaaacgaccg tgatcgctga tgcgagtcca gtgggattag gagctgtcct 2280 agtccagaga aaagcaggtg agaaccgagt agtagcgtat gggcatagaa gtctaacaga 2340 tgtggaaaag agatattctc agacagaacg cgaagcactg tcattagtat gggcttgtga 2400 acacttccag atgtatttat taggtacaaa gttcaaactc ataacagatc acaagccgct 2460 cactcacgtg tttaacaacg cgaattccaa atcaacacct aggctagaga gatggagctt 2520 gaggttagag ccatttgact ttgagctaca gtacaagcca ggtgagtcta acatcgcaga 2580 cccgatgtct aggttaagta gaggtcccag agaaagcact aaagtggatg acacaggaga 2640 ttatattgca gcggtagtga gggaagctat accgattgca atgtcatggg aagagattaa 2700 aaccagttca gataactgcg atagtgtcga aaacatgaag gaagctttga aaacaggtaa 2760 gtgggacaag tgtgcagcaa gtgtgaagtc agtgagagga gagttgagtg agtgcgatgg 2820 tgtgattttg cgtggaaatc ggattttcat accctcagac ctacgagatc gagtgttaaa 2880 attagcacac gagggtcatc aaggaattgt caagtgtaag cagaggcttc gaagtaaggt 2940 atggtggtta ggcatggaca aggatgttga gtctatgtgc aaatcatgtg agttatgtca 3000 gctagtgtcg agctatgatc caccggtacc tatcgttacg accgaaatgc ctaaaggacc 3060 atggcaattt tgtagtacgg atcttcttgg accgctcccc gatggtaggt atgtgattgt 3120 catcatcgat tatttcagtc gatattttga ggcagctatg ttgagatcga ctaaggcaga 3180 gaacattatc gaattcttag atgcaacatt tgctaggtat gggtatccag aagtgttgag 3240 gacggataac ggtccgcaat ttatctcagg tgagttccag acatttctca gggcaggtgg 3300 ggtgaaatgg ctttctacga ctccactttg gccccaggca aacggtttgg tagagagaac 3360 taaccggtcg atattgaagg tgttaaagat agctactcag gagaaggcag acatgcagag 3420 agagtttagg aagtttgttg cggcataccg atctacgcca cacacgggaa cagggtgtac 3480 cccattttcg ttgatgtttg ggcgagaaat gcgcacaaag cttccccagc tagactttac 3540 agctagtgat cctgaattag ctagagacag ggatagagaa tacaagctaa agctgaagaa 3600 gcatgccgac aagaaggcta aagagagtga gattaaagag ggagatacag tgttaatgag 3660 gaatgaacaa caaggaaagt tagagccaaa cttcagacca gaaaagtaca aagtggtaag 3720 taagaatggt tctgatattg tttgcgaaag tgagactgga ggcacgctaa ggcgaaacgt 3780 tcaatgcgct aagaaagtgc cagaggcaac cagtgaggag gtaagtaagg agaaccaggg 3840 taacccggaa ttaatccaag accctataga aagcaaccct cctgtagacc aacctcccga 3900 accgccttcg atacgcacaa gtgttcgagc ccgccagcct ccagcacggt tgaacgacta 3960 tctcgtgtat cagtagattt tctatgtatt atttaagtga ttgattatca tgagctcacg 4020 tgcatggtta cgcattattt gattttccct agttgttgtg attactttta tatttgtagt 4080 tgatttaggt tattcattta agtcctacat tccattagca aaaaggggag gga 4133 // ID DNA-7-21A_NV repbase; DNA; NEM; 307 BP. XX AC . XX DT 02-MAR-2011 (Rel. 16.03, Created) DT 02-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-7-21A_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 7-bp TSD; KW DNA-7-21A_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-307 RA Kapitonov V. and Jurka J.; RT "A family of DNA-7-17A_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (02-MAR-2011). XX DR [1] (Consensus) XX CC This is a subfamily of DNA-7-21_NV. XX SQ Sequence 307 BP; 106 A; 56 C; 52 G; 93 T; 0 other; cacaggtagc ccaagctctt tatttgtccc tattgatttt acggtaaaca tagggcgaaa 60 acaaaattag tgaaaaataa aaaaacagtg ttgtgtcgtt tcttcgtcgg taaaaatttc 120 aaatcgtgaa tcttgaaaaa ggcgctttaa tacggccaga gaacacgcaa aaagtaaaca 180 taaacacaac actagactac acacgtcttt tcaacaagtt gtttttttat ttttcactaa 240 ttttgttttt cgccctatgt ttaccgtaaa atcaataggg acaaataaag agcttgggct 300 acctgtg 307 // ID DNA-TA-7_NV repbase; DNA; NEM; 141 BP. XX AC . XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE Starlet sea anemone DNA-TA-7_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; nonautonomous; DNA-TA-7_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-141 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-141 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-141 RA Kapitonov V. and Jurka J.; RT "A family of DNA-TA-7_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (10-FEB-2011). XX DR [3] (Consensus) XX SQ Sequence 141 BP; 59 A; 20 C; 29 G; 33 T; 0 other; gagtggtttt cattaacccg tgaaacaaag tgtgatagtc aaagggtaat agtcagtaaa 60 acacaaaaga gaacaataga atcagatcac aataaagtgt aatacgctaa agtgtagttc 120 acgggttaat gaaaatcact c 141 // ID TE-12_NV repbase; DNA; NEM; 3503 BP. XX AC . XX DT 14-MAR-2011 (Rel. 16.03, Created) DT 14-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE TE-12_NV transposable element - consensus. XX KW Transposable Element; Nonautonomous; NVREP77; TE-12_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1215-3417 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1215-3417 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-3503 RA Kapitonov V. and Jurka J.; RT "A family of TE-12_NV transposable elements from the starlet sea RT anemone genome."; RL Direct Submission to Repbase Update (14-MAR-2011). XX DR [3] (Consensus) XX SQ Sequence 3503 BP; 912 A; 1096 C; 406 G; 1054 T; 35 other; tgagatgtac gcagagggga gcaacacgcc atatccactc caagccagcc aatcatcgaa 60 gatgattcac cactaccaag accctcaaga accgacgaac agcccctcta cagaaatata 120 actgatatat atacactgga taaaaactcg gaagccagcc atctacaacc ataaacccac 180 aggccctaac agaacggcaa aaggaaccct acgagtctcc tgtaccacac agcatatcca 240 caccaataaa aacagtcctt ctacagaagt acatccccga tccatcgaca acaagccacc 300 atctccagct ataggcatac cggcctcaac aatgaccgta gaaaaacttc cacgagactc 360 ctacgtaaca cacgctactg ccctgaatat cctcacctgg ctcctcacca acactctatc 420 ctctcagcgt atgccacccc gtcatcctat ctagcacaga acacttccaa aatattcccg 480 tacaataata tagccattcg ttgtattcat ccgccatatt ttgccaattt tgtaaacggg 540 ctcctcacca acactctatc ctctcagcgt atgccacccc gtcatcctat ctagcacaga 600 acacttccaa aatattcccg tacaataata tagccattcg ttgtattcat ccgccatatt 660 ttgccaattt tgtaaaccaa accgcaacca akttaataaa tacccggatg tacaataacc 720 ggaaccggaa acagcgatat ctattttcat ctaatactcg tataaccacg agcgcaatcc 780 cctcataacc cctcacttcg ctacatacgg aatacctcca agacaggcaa tctaagctcc 840 gccaatacac atctcgggta tgtacaccct ccttcccaca catcctacat actacccacc 900 acatcacgac acccgtattc tctccccttc ccgctacatg cataagttcc cacacttatt 960 tatcatttag tccaccacat acagccacta gccaggacca ccacatgcac cattttgtcc 1020 actacacact tccccctcct agcttagcct ctatccactt tttttctctt tacctcattc 1080 ccctgcgcgc tactttttac ttttcagacc aagccatgta ctcagscgga gccaggcgmt 1140 acacaggttt ggcaattgca cgcaccacgc ttcactagag gcattactaa cgagcgtgta 1200 ggggcgggtg atgagggcct tatcattcga aacacgcttc atatacgaat cgtctcccta 1260 gttttttccc cttttactcc caccatcatc gccggttttc ccctagcttt cccctaagtc 1320 cccccgcttt catctccagg ttcgtatatg accaaccaat agacctcgcc ccctgaagag 1380 aagtcttggt tggcgttata tgcctttagt tctacatttc gcagagctct ttgaaatgac 1440 ctacacactt ttgtcttatt ggtttatttt gttatgtcca ttttgcatat acatgccggt 1500 tgttttcttc gtgcctttgc cttttcccct tatctcttac caccgattat cgcttcatct 1560 ggggaaaact atccttcctg tcttgttaac gtttcagcgt catctccact ctcaccgcgc 1620 tccctttgtc gcctcccgcg cccctacttc atcttcttct cgccgtttta ctagcatcaa 1680 tttccattgt ccgcaatacn ccctttcacc gctacagmat ttcntatctt ttctcggcgt 1740 tttcgcaaca ctcattcggt ctctgttgtt gtttaatttc gcctgtcagt cataccactt 1800 acacacttca ttagatacat acctccacgc atacctcacc ctccccatta ccgctcacca 1860 tctcctcccc acaatccaaa cacttttctt tctsttatcc tacacattac tttcccaccc 1920 tacacacaac acactttccc anaaacacta cacagtcttk tcacaatatc cctgctcatc 1980 attctgttca cactcacatt atccccctcc mtcagatttc actaatgccg ccatcacccc 2040 ttcacatccg ctacacaaca ctmgcmacaa gctnccgatt ttnactgttt caatctccac 2100 ataataccat atttactaac caccttctcc actmaacaaa aaataccctt tattcataac 2160 tctcatgtcg ttttattatc aaccccatct ctcataacaa ccttaacccg tagtctcata 2220 acccataatc ttaaccaccc gaacataacc ttacacaata acttctccgt ttattacaat 2280 cgtttaagwt ttkatttaca ttctttcctg tagwatgatt ttgttccgac acacawcttt 2340 aagctggttt ccgctttgtt aattgcttca cttacaattt attcatcgwg tcgggcacga 2400 kgccactcga gttttagcaa acaattatct ccgttcctat aacacatacg acctcattat 2460 gaatgggggg gatctgttwg atctgtttta cattcttttc tgkagaatka ttttgttctt 2520 atacacaact ccaagctagt ttctkctttg tgaattgctt tactaacagt tcactcatcg 2580 ggtcaggmac ggggtcactc gagtttaaac aagcaattat ccccgttcct atwacacgtg 2640 cggcmtcatt cwacactcta accttttgcc atcgctgtta gwaccctttg tctttcatgt 2700 aaccccatca atacacatat tttccgtgca aattcgcatc attcacgtga acttatctat 2760 ttcatggtaa cgcatcggct tgtgtcaaag cgttcgttcg ttctaaattt ggtcgcataa 2820 ttaacttacc gwatatgcat aagtgctacg tcacttccgt tctattcttw acccakaaaa 2880 gttagttttc tttgttttct ttagtctcat watattattt cttataatat ttctgcgcta 2940 caatttattt tacaattact ttcgctgtaa cagaaactat tctattattt ttggtggwtt 3000 tttcgacacc ttttggacat atttcctgtt cattttttac atcatttagg cattagattc 3060 atactccata ttgtcatagt aacggtcatg atatactatt tcatacctaa tagttcccac 3120 aactacacct actccacatc tccctcacca ccactcttac ctatacaccg taccaatttt 3180 tcccccacca acacagccat tagccatctc cataccacac catattatta ttaatttttt 3240 ctttttcacc tacccaccac acactaccac aacctattct atagtcccac tttatctttt 3300 caccaccctc caccacctac tagtctaacc tatccacctt ttcaccgtaa ttacattact 3360 accatctcca ctctacatta ccttactagc catccttcac catcaccctc caacatcacc 3420 ataccatatg atcacaccca cctcactacc acaccacttt aggcccctac gtcttggtac 3480 gaatacccga tccaaaccaa aaa 3503 // ID DNA-4-1_NV repbase; DNA; NEM; 4920 BP. XX AC . XX DT 30-APR-2008 (Rel. 13.04, Created) DT 30-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Starlet sea anemone DNA-4-1_NV non-autonomous DNA transposon - DE consensus. XX KW DNA transposon; Transposable Element; DNA-4-1_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4920 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4920 RA Kapitonov V. and Jurka J.; RT "DNA-4-1_NV - a family of non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Repbase Reports 8(4), 400-400 (2008). XX DR [2] (Consensus) XX CC DNA-4-1_NV elements are flanked by 4-bp targets site CC duplications. CC Termini of DNA-4-1_NV differs CC from elements that belong to the Chapaev, Kolobok and piggyBac CC superfamilies, which CC are also flanked by 4-bp TSDs. It is likely that DNA-4-1_NV CC belongs to a CC novel superfamily of DNA transposons. XX SQ Sequence 4920 BP; 1490 A; 955 C; 1005 G; 1470 T; 0 other; aacactttcc catttaaaaa tgtactttcc catttaaatg tgtacttttg cgagagcgtt 60 gttttcacgt cctcaaaacg cgggtcaacc aatcagagac cgtctggaga acgccagtca 120 gccaatgaaa tgatcttgaa atttgagccc tcgtgattcc gcgttcttcg acgcgacttg 180 accaatcaca cggaatcatt cttatcccgc aaaaaggtca atacaaatag ccttctgtca 240 acagatgcag attgccggtg ataacgataa ttaacgcgga ctaggggtca gaagagatca 300 aatggagaag atgactttag aaaataaaag gagtagcctt acatcttcaa aactacgtat 360 agtactcgaa ctttaacaag tcattaaaca agctatttct aaaaccaaca ccaaggacac 420 tcgaattggc ttaccctagt aatgaccttt ttcttctttg cacagctctc ccagaatctc 480 ttttcgctat accaaatatg tcatgtcttt ctgtgaacaa ttcaccaagt ggatattttt 540 agtgttccca ggtcggacta atcatacttg atctcaatga accaaagact tgtgatggcg 600 cgaaacgaaa ttggcgccct tttagtcccg tggcttggct acaatcccgg ctgtatccag 660 cccaaatttg tctgcatcca aatcaaatat tgttcttttt gccgtcggtt tcatccaaga 720 atgacccatt cgtattgttc tcattataaa aagatgcagg agagaaatct tctagctcac 780 gctgcacatg atgccgtgta acacgagatc tcagggtatg gaatgaattg ataaacaatt 840 tactgtttca acagattcgg attatacagc aaatcaaagt gcgttttcga acgcagaacg 900 tgcaatctgt aatataggtg aactcgaaaa ataccatcgt gtttcgaagc aatcacatac 960 ggaaaacccc tttaataaag caaacctcta actactgaaa catctcaccg aaacgtgaaa 1020 gaggaagata gtatacaaca tcatcattta ttacaaggag aacgaataaa agccaatcac 1080 attcccaatc agtgcgtttg cagacgcaac gagtgtctag gatcgattta caaagataca 1140 taggcatgga aagccggtaa aaattttagt gtactatgta tctaaagtga ctagccttta 1200 aacaatatat cggcgttttc ttactttgta agtcaagcac gcaaaatgtt ttgttcattt 1260 cacagagatc ggacatagcc atgcgttata cttctcgata gacactcaag agtaggcttt 1320 gaaaacaaac cggaaactgt gcgttttaaa gacgcaggct agtcaatagt gtgaaagaat 1380 ctaattttcg gtacgagaaa cacattatgg cgtttgtaat tggttgttag aagacgaggt 1440 tgatacaact ttcttattca aacatcaaaa gcaagctgtt ataagttgat ttacgtctag 1500 ttatgtgctt tgggaaagca cccgactccg ggacagatgg agcaccaaag gttgagctct 1560 ctgttggtgg tcatatgata tgattaaaaa actgctatct tgtaagctag gagataaggc 1620 ccgaacaaac cggaaagtgt gcgttttaaa gacgcaggct agtcaatagt gtagaagaat 1680 ctaattttcg gtacaagaaa cacatggcgc ttgtaattgc ttgtaagaac atgatataat 1740 ttttcttgtt caaacatcaa agcaagctgt tattagttga tttatagttg atttacgtct 1800 ttaaagctag ttatgtgctt ttggtttgct ttattttggg tataagttca taatatttcc 1860 tacattcatg tcaccatcct gggcttacat tcaaagtagt ggactacaat ttatttcatt 1920 gagcattttt gtctatagtt tggtgagctt gagtataagc agggtataaa taacaatgtc 1980 aagtaattta tcccttagga taaaaccaat cgcatgtcta ttagtgcgtt cgaaaatgca 2040 acggtctaga tattcatgca agcatgagat caagagacag atataggcat ggaaagccag 2100 tgaaaatatt atatcctcgc aaactttaaa caccgccaga ttactgtttt ccaaaagtag 2160 ttgtttatcc gagaactaga cattttgttg ccaataaaca gtgaacaata cgctctgaga 2220 ataaagccga tgttttggga tgttggcgcg ttctagagac cccttttagg ggtagcgatg 2280 agtaagttcg agatttgccg aggcgccgag accgcgtttt agaatccgag cccgagactt 2340 taagtcaaat ttcggaatcc gtgtccgagc ttttactagc ttgtgttcgg acatcagata 2400 acttgctcga ggtatgtcat aaacattagt tgaaaaagaa tagctagagc ggaaaggctt 2460 aagactcgag actcgaaaaa gagggaaacc cttagcagta acaacataaa acagatcgcg 2520 tttaacagag actccgagaa cgtggtagaa aaagaggctc caagacccta aaatgtcggg 2580 gggaaaaacg agacttcgag acttccgtaa aaacgccgag attccgagac tttgcgaaat 2640 ttttgcgaga ttttcgaaat tttaaggtac ccatcgttac cccttacgta tattacagat 2700 tgcacgttct ttttgcaatt ggttccctcc aagaatgacc cattcgtatt gttctcatta 2760 taaaaagatc ttctagctca cgctgcacat gatgccgtgt aacacgagat ctcagggtat 2820 ggaatgaatt gataaacaat ttgctgttgt tgcaattaaa tattgacaga ttctgattat 2880 acagcaaatc aaaacgtagt aagtgcgttt tcgaacgcag aacgtgcaat ctgtaatata 2940 ggtgaactcg aaaaatacca tcatgtttcg aagcaaccac aacttgagta aatagccgcg 3000 ggtataggtg ctggggctcc ggtgctgggc ttcccacatg ctaactttgt caagttgaaa 3060 aaatgtaaca ccaagctgta atatccgcct gttcctatgc atgaatctac gatactgtag 3120 gatgataata ggctaaattc ttttaaacag attatctgtt caaatctttt gatttttctc 3180 tagaattata ttatgtgcat cgaattgcgc tcttttgctc gactggtgct tggaatgctt 3240 gtgtgccaag agcaaagctc cctagctcgg gccttatctc ctagcttaca agatagcagt 3300 tttttaatca tatcatatga ccaccaacag agagctcaac ctttggtgct ccatctgtcc 3360 cggagtcggg tgctttccca aagcacataa ctagacgtaa atcaacttat aacagcttgc 3420 ttttgatgtt tgaataagaa agttgtatca acctcgtctt ctaacaacca attacaaacg 3480 ccataatgtg tttctcgtac cgaaaattag attctttcac actattgact agcctgcgtc 3540 tttaaaacgc acagtttccg gtttgttttc aaagcctact cttgagtgtc tatcgagaag 3600 aaaatataac gcatggctat gtccaatctc tgtgaaatga acaaaacatt ttgcgtgctt 3660 gacttacaaa gtaagaaaac gccgatatat tgtttaaagg ctagtcactt tagatacata 3720 gtacactaaa atttttaccg gctttccatg cctatgtatc tttgtaaatc gatcctagac 3780 actcgttgcg tctgcaaacg cactgattgg gaatgtgatt ggcttttatt cgttctcctt 3840 gtaataaatg atgatgttgt atactatctt cctctttcac gtttcggtga gatgtttcag 3900 tagttagagg tttgctttat taaaggggtt ttccgtatgt gattgcttcg aaacacgatg 3960 gtatttttcg agttcaccta tattacagat tgcacgttct gcgttcgaaa acgcactttg 4020 atttgctgta taatccgaat ctgttgaaac agtaaattgt ttatcaattc attccatacc 4080 ctgagatctc gtgttacacg gcatcatgtg cagcgtgagc tagaagattt ctctcctgca 4140 tctttttata atgagaacaa tacgaatggg tcattcttgg atgaaaccga cggcaaaaag 4200 aacaatattt gatttggatg cagacaaatt tgggctggat acagccgtga tcgagccaag 4260 ccacgggact aaaagggcgc caatttcgtt tcgcgccatc acaagtcttt ggttcattga 4320 gatcaagtat gattagtccg acctgggaac actaaaaata tccacttggt gaattgttca 4380 cagaaagaca tgacatattt ggtatagcga aaagagattc tgggagagct gtgcaaagaa 4440 gaaaaaggtc attactaggg taagccaatt cgagtgtcct tggtgttggt tttagaaata 4500 gcttgtttaa tgacttgtta aagttcgagt actatacgta gttttgaaga tgtaaggcta 4560 ctccttttat tttctaaagt catcttctcc atttgatctc ttctgacccc tagtccgcgt 4620 taattatcgt tatcaccggc aatctgcatc tgttgacaga aggctatttg tattgacctt 4680 tttgcgggat aagaatgatt cggtgtgatt ggtcaagtcg cgtcgaagaa cgcggaatca 4740 cgagggctca aatttcaaga tcatttcatt ggctgactgg cgttttccag acgtgttgaa 4800 ttaaggctat tgaagagacg gtctctgatt ggttgacccg cgttttgagg acgtgaaaac 4860 aacgctctcg caaaagtaca catttaaatg ggaaagtaca tttttaaatg ggaaagtgtt 4920 // ID Gypsy-32-I_NV repbase; DNA; NEM; 4226 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-32_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32-I_NV; KW Gypsy-32-LTR_NV; Gypsy-32_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-4226 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-4226 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-32_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 495-495 (2007). XX DR [2] (Consensus) XX SQ Sequence 4226 BP; 1229 A; 951 C; 1132 G; 914 T; 0 other; tggtggcagc cagtgagtga gcggactcca catctagaga ttcagacttc ggaaacggtt 60 ggtaagccag aagtcaatgg ttagcgaatt cactttgcct ccaccgcagg cactagacct 120 tcacgacgtt aatgtggcgg aaagatggaa gaagttccgc ctggcgtggg ataacaacgc 180 tttagcaaca gagttggaca aaaagggcga gaaagttcag gtcgcaacct tgctaacaat 240 aataggagaa gaagcgcgag acatatattc aacattcgag tgggctgccg aggaggataa 300 gacaaaaatc aagacagtct tagacaaata cgcggagtat tgtcaaccaa gaaagaacgt 360 cccctttgag aggtttcggt tcaatcagag gagccaggag caagaggaga gttacgatca 420 atataaaacc gccctaagaa agctttctga aggatgcgaa tttgacaaga tcacaccaga 480 cgagatcttg cgtgaccgga tcgtgtttgg gatacgggac agtaaagtaa gagagcgctt 540 gctaagagaa gcgagtttga cactcaagaa aacagatgaa aatgcaaggc atcagagagt 600 actgctgcac aaatgcgaga agttggaaat ggagagacaa tccatgcaat aaactctgga 660 ttcaaagccg ggaaatcaca gagacgacag agtgacaggc gatcaaatga caagtcaaac 720 aatgctgaga aatgcgggaa ttgtggccgc atacacgaca aggataactg catagcccgt 780 ggaaaaccat gcctgaaatg tgggaagtta aatcactttg ctgctgtttg ccgtagtaga 840 aaatcaggcg gagttatggc ggtcgtagag aaaagttcta gtaaagatgg gtgttatgta 900 atcagtgaaa tcgccgccgt cacactcgat gattcacagc tcttggcctt gaagctcgac 960 tctggaaatt atcttcgttt tcaaccagac accggggcgc agtgtaacgt gattcctgtg 1020 catttgtaca aacaagcttc tacagatgtt ggtctaatca acgtacagcc agtgaaaagc 1080 tctatctccg cgtatggagg atcaagactt ccggtgattg gcgaagttat cgtgcgtgta 1140 tcgcgtgacg gctcaaagtg caaactgaat tgcaagcttg ttgacagtaa ggacattcgt 1200 ccaatactag ggcgaaaggc gtgtattggc atgaatataa tcaaatacac tgataacgat 1260 gcgctgaaca aaccgcagac cggaagcgct ccagtatatg ctgtggagaa caagtgtcaa 1320 ggacagaaat gcgagacaaa gggaagcctg tacgagaaat tcccacaagc ctttgcgaat 1380 ggagttgggc tcctggaggg ccagtgtcac atcaaggtgg acaacgcggt caaccctgtc 1440 cagcatgcac cgcgtcgggt accggtggct ctacgccaac gactgcacac tgagcttgaa 1500 cgcttggtgg aacaaaaaat cattgcgtct gtgacaaagc ctacgccatg ggtgagctat 1560 ctggtggttg tccccaaacc caacggaaaa ctgaggatat gtttggaccc aaaggatctc 1620 aacaaagcga ttcagcggga acattatccc ctgctgacga tcgaggacgt tgcaacgcga 1680 ctacatgtag caaaggtgtt taccaaactt gatgccaaaa acggattttg gcacattgaa 1740 ttagacgaag actcgtcata tctcaccaca ttcaacacgc cgttcagaag atatcagtgg 1800 ctgcgtatgc cctttggaat ccggtcggct ccagaggtct tccagagacg catgcacgag 1860 atgatcgagg gtatgtcagg cgtggaggtc gtcgcagaca actttgttgt catcggatgc 1920 ggagaaaccc tggaggaggc gattcaggat catgacaaac atctgatagc gtttttagag 1980 cgctgtgagg aacgagggct caagttgaat gccgaaaagt ttgagcttag agagacagaa 2040 gtggccttta ttgggcacgt ggcgactggc acaggtctcc gagttgaccc ggccaaggtt 2100 aaagctatcc ttgagatgcc agatccaacg gataaagccg gagtgcagag acttcttggc 2160 ttagcacagt acctgagcaa gtttctccca catctgtccg atgaaaccaa gcctctgaga 2220 gatctaacca gagacgatgt agagtggtgc tgggatgaag ttcagactac tgtgcagaac 2280 aagttgaaag aggccgttac cagcacaccg gtgctgcgtt attacaacct caacgagcct 2340 gttaccattc agtgtgacgc ctcgcagtca ggcctcggtg cggcactgtt acagaacggt 2400 caaccagtgg catacgcgtc cagggctttg acgtcagcgg agacaagata cgctcaaatc 2460 gaaaaagagt tgctagctat cgtgtttgca agtgaaaagt tcgagtcgta tatctatggc 2520 cgagatgtgg ttcatgtggg gactgaccac aaaccgctgg aatcgattgt tcttaagcct 2580 ttgtgttcgg ctccgcagcg attacagaga atgctattga ggcttcagaa atataacctg 2640 gagctgcagt acaaaaaagg caaagaaatg tttctggcgg acacgctcag tcgagcgtat 2700 ttaccagagg tcaatgcaac cgagttcata caagagatgg agaaaattga ccacaagcaa 2760 tatcttcccg tcagcaaggc tcgatgggag cagattgaaa gcgcctcggc taacgacaca 2820 gttctacagc agctgcgtgt catgttacaa cagggatggc ccttcaaaag agccgaggta 2880 ccgcagtgtc ttctgccata ctacgacatc cgtgacgagc ttgtcctaca aggcaatatc 2940 gtgttcaagg gacagcagtt acttgtccca ctggcgttac gcaaggagct aattgaagta 3000 acccacggga gccacattgg cattgaagcg cgcatacgga gggcacgtga cactctctac 3060 tggccacgaa tgagcacaga tctcaaggag tacatacgga agtgtgaggt ctgtatggcc 3120 tatcgtaaca ccccgggtaa agagccactc aagccgcacg actttgtggc gaggccatgg 3180 tccaaggtcg gtgctgacct atgtgacttg gaaggaagaa cacttttagt aatttcagat 3240 tactatagta actacattga agtcgcacac cctaaattta ccaaatccaa aggcattatc 3300 aaggaactga aagcggtgtt tgccagattt ggcattcctg atgttctggt caccgatggt 3360 ggaccacaat tcggatcggc tgagtttgct gtgtttgcgc ggacctggtg tttcgaccat 3420 atactgtcat ccccgacata tgcgcagtca aatgggaaag ctgagaatgc cgtgaagacc 3480 gtggagcgcc tgttcatgaa atgtaaagac tctggccagt cggagtattt ggcacttttg 3540 aattggcgca acacacccac cgagggcatt ggtacgagcc cagcgcagcg cctcatggga 3600 cggcgttgca aaacactgct tccgatagca ggcaccctcc ttcagcctcg ctacgataca 3660 gatgcggatg ctcgagcgtt gctaggcacc aaacaacgcc agcagtatta ttataaccga 3720 catgcaaaac ccctcaaaga ggttaaccct ggtgagaccg tacgcatgaa gccaccgggc 3780 cacgagcgct ggataccagg ggtgtgcacc gagaagctag ataaccggag ctataaggcc 3840 aaggttggtg acagggtata tcggaggaac cgaaggcata ttctcaaaac caatgagcca 3900 gctttgcaag aaacggacac tccgtttcaa gagcccgagg cctctggaga ggatactcct 3960 ccccagattg tacttgatga aagcaacgaa cgggtgcgac cggttaccat gccaaccgga 4020 ctaaggagat cagaaaggag caaacaagtg ccggtctggc atgaggacta tgaagtcaca 4080 atgcgagggt gaacattata tatattacgg ttacacggaa gtttgatttg taaatagaca 4140 atcaagaacg gctgatcata gttatagatc taacgacgta ttctgtacta tgatgccatg 4200 tatcttttgt tctgttaggg gtaaga 4226 // ID Kolobok-N27_NV repbase; DNA; NEM; 4172 BP. XX AC . XX DT 25-MAR-2011 (Rel. 16.03, Created) DT 25-MAR-2011 (Rel. 16.03, Last updated, Version 1) XX DE Kolobok-N27_NV non-autonomous DNA transposon - consensus. XX KW Kolobok; DNA transposon; Transposable Element; Nonautonomous; KW semiautonomous; TTAA TSD; NVREP522; Kolobok-N27_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 82-714 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 82-714 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-4172 RA Kapitonov V. and Jurka J.; RT "A family of Kolobok-N27_NV non-autonomous DNA transposons from RT the starlet sea anemone genome."; RL Direct Submission to Repbase Update (25-MAR-2011). XX DR [3] (Consensus) XX CC Copies are ~98% identical to the consensus. Its ~700-bp portion CC was reported originally as the NVREP522 transposable element CC [1,2]. This transposon codes for two proteins: one is a CC N-terminal part of the Kolobok TPase (THAP DNA-binding domain), CC and the second protein is a Kolobok-specific protein, conserved CC in Koloboks from different species. XX FH Key Location/Qualifiers FT CDS join(3799..3540,3440..3180,2774..2615) FT /product="Kolobok-N27_NV_2p" FT /note="Kolobok-specific protein." FT /translation="MSTDDDSSTASSSAYKPSSQSDTHEFEPGAGPSNQIE FT SDSESEENGYAGEPLADPEWLLTYETEQEQKREMEEDLNKRLTKARDGEWC FT KYENCNTEFVRNINECYCCTELEGCVEALQSDLVVQDLEPCTKLKCVTEHP FT GFAPVCLEKWSLRMAAKKLRRRDKETYKQTGTEERLLRALAYREFTRLIYG FT IMGRKRIPLPACAYHAIRRTFPMAEDDDGAGFELRDD" FT CDS join(356..718,1042..1110,1186..1254,1330..1422) FT /product="Kolobok-N27_NV_1p" FT /note="THAP DNA-binding domain." FT /translation="MPNRCIVFGCGNVPSQKEGISLHLIPFYGDDRPEAKS FT RRRRWIDFVNSKRQAKGNRVWKPGTTASICSKHFLPNDFPNVYAGEVRKKR FT LKVDDFGVSVWPTVHMRRADEETAPPTKRTKRMTDVSTGLFMPDTWAIPST FT SSAPETAVATAESDTEIEPFDNTTSVPEFCYTYFVVAVATAESAEIEPFDN FT TTSVPEVC" XX SQ Sequence 4172 BP; 1265 A; 797 C; 836 G; 1274 T; 0 other; agtagctctt tcaattgaaa tggcattaaa atcggcctcg agagcaataa atgcgtccat 60 tgttgtcgaa aaaagtaaaa aaatccatca aaacatcatt ttttggcgta tttttaaact 120 ttttcaatat ttctcatgga ctcgcacttt ttcattttcg atcagcatca gtctccacgc 180 ggtaacaaac gtgccgagga tgactggaac gaggggttta cgtcatatca ggaacggaag 240 tgactcgcac attctcaaaa caacagcgtt catgcgactt ctacaagacc atagcgaaac 300 cagtgcgatt tattacagat tttttacgta gaaaaaaggt ttttgatcga cgaaaatgcc 360 caatcggtgc attgtattcg gttgtggcaa tgtaccgtcg caaaaagaag ggatatccct 420 gcatctgata ccattttatg gtgacgaccg acccgaggca aagagtcgta gaaggcgctg 480 gatcgatttc gtgaattcta aaagacaggc aaaggggaat cgagtatgga agccaggtac 540 aactgcatcg atctgctcaa agcacttttt gccgaacgat tttccaaacg tgtatgctgg 600 tgaggtgagg aaaaagcggc tgaaagtaga cgatttcggc gtgtctgttt ggccgaccgt 660 gcatatgaga agggcagatg aggagacagc tcccccaaca aaacgcacca aaagaatggt 720 gagttgatat ctatatttac aaatttatcg tgaatgacag aaacagtgat ttcgtaagcg 780 attagttcgc catactcaag tctatatgcc ttctaaactt gcaaatggtt tcaattgttt 840 agagggtgaa agcagcgaag gaacgcgcag agagtttgtt tgggcctggc acgtgggcca 900 tcccttcatc tgcacctcag cagagtgtta gcaagtcttt tacattgata atctccgtgt 960 atcagtattt ttcgtgggtg attgtttcat ctacactatg tttaggctct gaccctatat 1020 tttgctgtat ttattttgca gactgatgtt agcactggtt tgtttatgcc tgacacgtgg 1080 gccatcccgt caacttcatc cgcgcctgag gtaagtcagg gttttttatt ataaaaactc 1140 ctattttatt tctttatata tgtttttgct acactttttt tatagactgc tgtagccact 1200 gctgaaagtg acactgagat tgaacccttt gataacacca catctgtacc tgaggtttgt 1260 tagattttta taatgatcaa atcccaatat caatatatct ctggatctat ttatgtttta 1320 ctctgatagt tttgttacac ttatttcgta gttgctgtag ccactgctga aagtgctgag 1380 attgagccct ttgataacac cacatctgta cctgaggttt gttagatttt tataatgatc 1440 aaatcccaat atcaatatat ctctggatct atttatgttt tactctgatg tgacatggca 1500 atctccattg ggcaccggcc cgccaactca tctagcgttg atgagtttaa tgttctaata 1560 ccaagaaaat acataactag taaaagctaa aggcctttga attgaaaaca attatcaatc 1620 caaccaaata attaattgca gactatgtag atgaactgta catgttcctg ctacaatcga 1680 gtgaagatga gctggcttca gcaataaatg aactacagga gctgacacca gcgccaatgg 1740 tctctatgat ggagagagag tcaagagagg tggccttgga aaggcattca aagagacaaa 1800 aaatgaccat cacagatgtg cctcctactg aacaaccagt tgctccaggt ttgatttttc 1860 tctctctttc tactctactg gttagcagta cagaattatg attgaactca aaagcatatg 1920 tgtatagaca agccatatag ccatatctta gccatgtgtc tttggcaagt taaacattta 1980 tgcatgtatg catgaggttg ggtaaaaaat atttaactaa ttccagtctt tcacttttat 2040 agtttcttta gaacccccaa gacaagtagc agctgtaagt ggcaaagaga gacggtgcac 2100 cacttgccat tttcctatga aaggtcacaa gaatatctcc acctgtccca gaaatcaaaa 2160 atagatttag aaatagattg aggctttgct cattagaagg cagaaaataa taagagtgct 2220 gcagtgctta tacaagtaaa tatcgtatgt acacttgatt catggattaa tgacaaccac 2280 tctacattct gtgaaatgtg ttgtagactg tcagctataa aaattcaatt tattataatt 2340 aatctggggt tcaatttttt aaacatatgt aaggaaatag aaatagaatt cattgtttag 2400 ttatttgcac ttaaaaataa ataaataact ggcagctgaa attgatgtaa agaaaaagca 2460 ttgtctttgc ctaccacctt ataacgattt gtacttgaat cgataacaat tcgggagagt 2520 ttcttttact gaaagcacca ataataaata aaacatacac atggaaataa ttccaatatc 2580 caaatcaatg aacaacgaaa ataaatggga attaatcatc tcttagttca aaaccagcac 2640 cgtcatcatc ttcagccatt ggaaatgtcc ggcgtatggc atggtatgca catgcaggta 2700 gtggaattct tttccttccc atgattccat aaattagcct agtaaactcc ctgtaggcta 2760 aagccctgag cagtctgtaa taaaagcgag cagcggttag aggtggaata gatttcaagg 2820 gaaaatcaca tacaagacga gatctatttg aacatgattt atctatttga tttatgcaac 2880 aagaacatga tattacagag ctggcgccat gtgtacccta atcacgaact ctaacatgaa 2940 agctagtaat gggcttttta gttccagcaa aagcatcaag agtagaataa attttgtgtc 3000 ttaaagaaat tagatatgac tagaaattat tatttttaca aaagcaatga ttttggtgtt 3060 tgcgcggatc agaacttgtt tatcaatgcc atatcataac aaagaacaaa ttagaaggaa 3120 aagcaaaacg cgccaagtag ccagtgaata ataattgcgc ttctaaaagg aatacatacc 3180 tttcttctgt cccggtctgc ttgtatgttt ccttatctct tcggcgcaac ttttttgctg 3240 ccattctcag gctccatttc tccaggcaca ccggagcaaa tcctgggtgt tcggttacgc 3300 actttagttt agtgcatggt tctaaatctt gtacaacaag atcgctctgc agtgcttcca 3360 cgcagccttc taactcggta cagcaataac attcgttaat atttcttacg aattccgtgt 3420 tacaattttc gtatttacac ctagtgaaaa aagataggta aatattggta tcacaactca 3480 gcgacctaac tggtcaaagg caacgaggta tgagattcca actaccgagt agttcgtacc 3540 attcgccatc tcgtgctttt gtgagtcgtt tattgagatc ttcttccatc tctctctttt 3600 gttcctgttc agtttcgtag gtgagcagcc attctggatc ggctaatggc tcaccagcgt 3660 atccgttctc ttccgattcc gagtcacttt ctatctgatt cgaaggtcca gcgcccggct 3720 caaactcatg cgtatctgat tgggaactcg gtttataagc agatgatgat gcagtggacg 3780 aatcatcatc agttgacatc gtttgcgata aaaatagcac gtttttaagg agatcgtatc 3840 ttatttttct ctagctcaaa gctatccgta ctgctagtaa ctaagaacta cttggaagtg 3900 tgagattttg ggttcctgtt ttgacgtcac aaccggaagt ggatggaaag cctattgttt 3960 ttacctcgct atgattggct aattgtattg agccgattta catgctgtcg gacagcggat 4020 agggtgtagc aaaaaagtgt aaagaagcgg gaattttgaa aattcaccaa aaaaagatat 4080 tttgatggat ttcagtgatt ttttcgatgg atatgagatc aataattata ttttaaggct 4140 attcaggtgt ctgtagaagt gaaagagcca ct 4172 // ID Gypsy-37-I_NV repbase; DNA; NEM; 6619 BP. XX AC . XX DT 06-JUL-2007 (Rel. 12.07, Created) DT 06-JUL-2007 (Rel. 12.07, Last updated, Version 1) XX DE Internal portion of the Starlet sea anemone Gypsy-37_NV DE autonomous LTR Retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37-I_NV; KW Gypsy-37-LTR_NV; Gypsy-37_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-6619 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H., Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-6619 RA Kapitonov V.V. and Jurka J.; RT "Gypsy-37_NV - a family of autonomous LTR Retrotransposons from RT the starlet sea anemone genome."; RL Repbase Reports 7(7), 505-505 (2007). XX DR [2] (Consensus) XX SQ Sequence 6619 BP; 2058 A; 1327 C; 1660 G; 1573 T; 1 other; tattgggggc tcagacaaag aaaacggatt cagaagatga ctgaagaact tcagcttagt 60 atcgaagaga gtttgtgtcg cttgacggcc gaacagttac acgaagtgga aaactttttg 120 aagctacacg aggacgacaa actatctagg ttgaaacggg tcagaaggat ctcacaagct 180 gtggataacg agcttgagag caaaggagac caagcagtca gctatctgaa gggattagag 240 gaggttattt cggcgatttc tggagcaacg aagcccaaac aagaaaaaca agcccagcca 300 aacacgagtg caagtgcaag tccgagcgag gagctccaag ctctgaagga tcaaatgaac 360 aagcttatgg gtatggaatc aaagaaaggt ctctacattt cggatataaa gagagaaatg 420 aagatttctg ggcaaattgg agagccagga cagaaagata agttaagttt tgtcagtctc 480 gtgagacaaa ttgactctgg actaaagaaa ggacacacag aagttgaggt ggtcgatgca 540 gtaataaagt ccatttgccc aggaatgaga cttcgcagct acttggaagg tattccaagc 600 ttgactctgg cccaattaag acacattttg cgctcgcatt atcaggaaaa aaatgcaaca 660 gaactgtatc aagaattagc aattttggct caagctcccg gggaaacccc tcagagtttt 720 gtgatcaggg ctttggatca aaggcagaaa gtttgttttg cgtcacaaga gtctgatagc 780 aaaatgaaat acgatcccga attggtgcaa ggactatttt taagaactgt ggagactgga 840 ttaatggatg atggtgtaag gatgaaacta agaccatatc tacagaacac agataccact 900 gatgaagatt taatccagca tgtaaatatt gtggcatctg aggagttaga gaggaaatca 960 aagttaacca aaataactaa gaaagttaat cagctaacaa gtgataatgt cgaatcacaa 1020 gggaatggtg gacgtaagga caaagggaag actgctccag ccgcagtctc aacagaagac 1080 ctgatcctag cagaactcaa gtcagtgaag tcggagatgg ccacattgcg ggagacagtg 1140 gcccaagtgc aacaggaaag ggatggcaat attgataatc gggatataca tgtacagaag 1200 gccaagagag tttgcaagca gtgtgaggat agcaatacga ttgatgcatg tgatcattgt 1260 ttttattgcg gttcatctga gcattgggca cggggatgtc gtaagcggag accaacacaa 1320 aacaaggatt cgggaaacca gcaccggctg ccaccgcggg acaggcggta gccgggtcgc 1380 aagttgcttc cacaggaaag tcccaagtat gtgtgttatg tgggcatcaa ccatctggta 1440 gtgattgttt agttcaatgt gcgggttgta agtcagcatt gtactgcggt gtgcaatgcc 1500 aacgggctca ttggttggaa cacaagaaac tttgcactgc gatacaagag ttacaagcca 1560 agaaaaacag tgagtacgca gagcgaattc agtctagtgt atttatgtct catctcactc 1620 caaaacaaca tgctgttatt tgtaaactgg taggaccaaa atgcaaagtt tcctgcatgc 1680 ttaatgatat tagcacagag gccctctggg atacgggcgc gcaaatttca gttttatcta 1740 aatcatgggt caatgagaat ggtttgaaca ctgatttaca agatattgag acactcctgg 1800 gtcgggatag aaacttaaat gtatctgctg caaatggcag tgagatccca tatgagggat 1860 ggatccccat aacattgaag ctagaatccc atgggtatac agggccagat gtagaagtac 1920 cttttttagt gaccccagga gagttagagt gtcccatcat tggatataat gtcatagaaa 1980 cagtgattaa agatttccca ggggataata gcaacaccac agggagccca ttacaggata 2040 ttatgaaagg tgcatttcca gaagtcagag gggaggcagt tggggccttg attaacttta 2100 tccaaacatg tgacaactca gaacccttgt gcatcttaaa gtcacctaag aagagtgtca 2160 gcataccggg ggggcagacc ctgagaatta attgtcgtgc aaataccggc ccagtcgagg 2220 agaaatgccc agttatcttt gaaccagatg aagaccagac attgcctaca gggctagaac 2280 tctcccagtc tctattgtcc atcccgaaag gaagctacgc gagttgacat ttacgtcagt 2340 aatgccacca agcatgatat caccctcagg gggggcacca tcttgggtag tcttaacctt 2400 atcagatcag ttaccccagc agaagtgaaa cttagtgaga tgaacttgtc tgattcaagg 2460 ggggtacacc caggtgaaac acaagaatcc aggggggcga ccatagattc atcacagagg 2520 gtcccagggg tggtgattgg agatctgaat gaagaacaaa aaaaggaagt cactcgtctg 2580 ttacaggaag aggaggagac ctttgcccgt gatagtcagg atgtcggttg catcgaagac 2640 cttgagttaa atttaaccct aatggataag actcctgttc agaaaacata tgtctcaatt 2700 agccgcccat tgtatgcaga agtcaaaggc tatattgagg acttgataaa taagggatgg 2760 attgtgaagt caaagtcttc ctactcgtcg ccggctgtct gcgtccgtaa acgggacggg 2820 tctctaagac tgtgcattga ctatcgtgaa ctgaatcgta agagtgtccc tgaccgtttt 2880 cccatcccaa ggattcaaga tgcattagac accctagggg gaaatagttg gttttcagta 2940 ctggatcagg gacgcgcata tcatcagggt ttcatgggga aagacagtag accattgact 3000 gcctttgtga ccccttgggg actgtatgaa tgggttcgca ttcccatggg tctttcccag 3060 gcccccgcgg cctttcaaag atatatgcaa gattgtttag aagatttaag agacaccaca 3120 tgtatcccat atttggacga tatcattgtc tttagtcaaa gttttgaaga acatgttagt 3180 gatctgagga aagttttgca aagactgcgg gaacacggga taaaattgaa acccagcaag 3240 tgtaaaatct ttcaaaggga agttacattc cttggacatg ttgtgtcaga agaaggttat 3300 cggatggatc aggagagtat taaggcagtt acggatttaa aggatacgcc acctaagaca 3360 gtcggagaag ttcgcagact tatgggactt ctaagttatt tcaggagata tgtacataac 3420 tttgcgacgt tagcagcacc catttatgat cttttgacgg aacccaaggg aggtacaagt 3480 accaaatcga aaagtaggtc gagtaagtcc ttatcacgcc aaccagtctc ttggtctgag 3540 gaacatcagc gaatactgga gacacttata gatactatca catcaccacc cgttatggct 3600 tatccggact accaacaacc ctttattctt cacactgacg catcggagcg gggacttggg 3660 gctgtattat accaacgcca gaaaggaacc ttgagagtca ttggttacgg gtcacgatcg 3720 ttaactcaag ccgagcgcaa ttaccatctg cattcgggga aactcgaatt cttagcgcta 3780 aaatgggcaa ttacggagaa atttagagac tatttgtact atgcccctaa atttactgtc 3840 tacacggata ataacccgtt aacatacatt ctgaccactg ccaaattgaa tgcgaccgga 3900 cagcgttggg tatcagaatt ggctgactat aactttgtca tcaaatacag acctggaaag 3960 gcaaatgggg atgcagacgg tctctcgcgg atttcacaag gcatggagaa gtatatggaa 4020 gaatgtcaga agaccatatg ccaagaagac ataggagcca ctgtgaattc tgtaaagttc 4080 caggcaggtg aagatggcat tccgactatc tctttgtcag catgccttga agattctccc 4140 gacgataatg tcaccttagg cacgcaagca tggtcgacag aggacattgt gagacttcag 4200 cgtgaggata caacaattgg aaaggtgatt ggtttcatac ttaatgagtc attacccagc 4260 ttaaaggagc gaaagaagga aactcctgaa acaaaggcca tgttacgtca ctggaagaag 4320 ttggaactag gtaaggatga tatccttcgc cggagaattg gaccacgtct ccaattggtc 4380 cttccacgga aacttcatca tctcgtttat aaggaaytac atgaggaaat ggggcatctc 4440 ggtgcagaga gggtattgca acttgcgagg gataggttct tttggccccg tatgcaacag 4500 gacattgaac actatgttac ctctgtttgt cgatgtatca agcaaaaacg accgaaacat 4560 gctcaacggg caccaatgca gagtattcaa acaacagctc cctttgaact catttctttg 4620 gactttttac atctagaaaa aagcagtggt gggtatgaat atatcctcgt cagaaagtga 4680 ttgatcattg gttactggtc acgatttgcc caagcatacg caacattcgg aataaatcgg 4740 cttcttagcc ctacagtggg caattacaga gaagctgtat aatgattaca tcatgaggtt 4800 tgggtttccc cttcgaatac atcacgatca ggggaaggag ttcgagaacg atctacataa 4860 acatctggaa aagcatagtg gggtagctct ctcaagaaca ccatatcacc acacatgcaa 4920 tgactttatc agattttgca atgttacgca cactaccaga gaaccagaaa tccaagtgga 4980 aagatagtct taacaaagtt gtacacgcat acaactgcac tcgaaatgac tcaacaggat 5040 tttctccttt ctatctactt tatggtcgct cacctcgact tcccattgac ttaatgcttg 5100 gtaccagttt gcaaggcact ccgcaacagt atccgaaata tgtgacaaag tggcgagaaa 5160 ccatggaaga agcttacagg atcgcacgtt ctaagtcgac agctcaagcc gcgcggggta 5220 agaggtacta cgagaagaaa gtgagatgct catcacttaa gccgggtgat cgggtattgg 5280 tacgaaacct gtcagaacga ggcggtccag ggaaactacg ctcatacttt gaggatcagg 5340 tgtttgtggt tgtgaatcag aagggagaat cgagcccagt gtatgaggtc agacctgaga 5400 atggcaaggg caggaaccgg actctgcatt ataacctctt actgccatgt gattatctca 5460 tgagtgacgt gattactcag ccaaaaagga aaaccaaaac acggaaacct gcaacaagga 5520 acgcagcaga gttgaaagag gagtcgagta gtgaagagga accagacttt gtttacggta 5580 gacaggttgg atatgcgccc gacgagaaag aagaagcatc aagcgaatcg gatgtagtcc 5640 tgggtcagca ggaggaagta tcaggcgagt ctgatgtagc accggatcgg caagaggaaa 5700 tagcatcagg cgagtcagat gtatctctgg atcagcaaga ggaagcttca gacgagctgg 5760 atggagcacc cgatcagcag gaaggaacgg caggtgagct ggatgaagca atagaggagc 5820 aggcagagag ggcatcacag cagcagcaag gggaacaagg tgatagggac agccaggaga 5880 actatgctaa tggcagcatc attggacgac ccgagcggaa taggcatcca cctttgcggg 5940 ttacttatga tgttattggt cagccatcct attatcgggg accggtcgct aaccatggta 6000 taactataaa tgagtcagca tggagtgctt acggtgcacc tcctacacaa gagttaccat 6060 gtgccacatg cgggttcaag gcacccttcg gtttacaggt accctacggt tattcggtac 6120 cctgcagtct acagactccc tacggttatc cggtacccta cggtttacag gtaccctaca 6180 gatgtccttc cttctcacca tggacaccag caatgcaatt acaagtacac tagtacactt 6240 acttgactta tatttgtttg tttgttacaa gaaaaagaaa agaaaaaaaa cggtctagtt 6300 agagacacta gttgaataat actagtatag cctagcaaat agtgtaggta acaaggtgta 6360 agaccttgag cagcattggg tatttacgtg gcaatgacat tgtgcaagag aactgtagag 6420 taaagaataa gcaagataca gctgtatgaa gaaacaagtg gaagccatgg ttggacttga 6480 tcaccctaca ccatgccttc atggaactga acattgaaat agtagagtag tcagattttt 6540 ttttcctcag ttgcattgta gtattgaaac atactagtaa cttaaatgtc gaggacgaca 6600 tcttttcagg ggggaagtg 6619 // ID DNA-2-8_NV repbase; DNA; NEM; 682 BP. XX AC . XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE DNA-2-8_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 2-bp TSD; KW NVREP360; DNA-2-8_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-682 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-682 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-682 RA Kapitonov V. and Jurka J.; RT "A family of DNA-2-8_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (22-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 90-98% identical to the consensus. It was reported CC originally as the unclassified NVREP360 DNA transposon [1,2]. It CC belongs to the same group of DNA transposons together with CC DNA-2-4_NV and DNA-2-7_NV. XX SQ Sequence 682 BP; 233 A; 130 C; 117 G; 202 T; 0 other; ctcaagtgta ttaaggcttg gatcctaagc taaaacagtt gaaattttga aagttgcctt 60 aaagtgagtt aacattgcct taaatgcacc atttttggtc aaaacatcaa actcggcaat 120 gttagctgat tggtaatatt ttattttgag tgatgacgtc atccagccga tcacgtgact 180 tttgcaaatc aatatttcaa aaaattctcc gctggtggat acgctatgaa aaagaaaaca 240 tcgcatgttt ttatgttcct ttgaaacaca tctgcacact gatgtcttaa ccggcaagaa 300 aagtttagcc tttcggtcac aaatcaacat tttaattcgc agcaggtcac gtgacttaac 360 aaaatattta atatcttgtt aacggcagag aaaattctgg atgctaaaac gctatcatat 420 gacacacata aagtcaacac ttatttagta aacacctttg tccaagctgt tttccccacc 480 ggcggaaagg caaaaaacta ttttgtcacg tgatctatta tgtgacgtca tcaccagcaa 540 gaaaacatta cgaaaatgtt aaggccgtcg actttaatca tcttgccaaa aagaatgaat 600 ttaaggcgat gttaacaaag tttaaggcaa aaagttatat tcgatgctaa aagcaatcta 660 cccaggcctt aatatacttg ag 682 // ID DNA-X-6_NV repbase; DNA; NEM; 1165 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-X-6_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; NVREP434; KW DNA-X-6_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-1165 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-1165 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-1165 RA Kapitonov V. and Jurka J.; RT "A family of DNA-X-6_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Length of target site duplications varies from 4 to 10 bp. Copies CC are ~96% identical to the consensus sequence. It shares common CC TIRs with DNA-X-7_NV. Originally, this family was reported as the CC unclassified NVREP434 DNA transposon [1,2]. XX SQ Sequence 1165 BP; 307 A; 300 C; 224 G; 331 T; 3 other; ggggggacgt tggggggtgc tcaataccgc acaaaatttc cgaaaatacc gcattaccgc 60 acacaaaaaa tcgagaatac cgcatacaga aaatagtcgt tcgtaaaaca agcgttatgg 120 tacgaactgt accgattact aagctctaaa agtcactctg catcgcaaac gtgataaaac 180 ttcgtagaaa actcgtgatg tttaccgtat ataaagttaa aagtcgtaat aacccctgcc 240 cttaggtgtg ttttttctct tacttcgaat acgttcttcc gttctgtcaa atctgcattt 300 cgtcacgaga aacaataata ttcttacctt cgacatgctg cttgactgct ttgatagggt 360 ttccgttgcg ataagatata ctggaggtga atatgtttat tcgtgaaagg gtgattgttt 420 ataaatcaat gtcgamaatg tcaacttttt agcaccgtca tagttttctt caatttagcc 480 ttgcttttaa tgtttataat tgaagtctag tcacggcgga gtcatctaga aaaaagtcaa 540 gacaggtacc ggttgttgat tctaacggct cttccaaacc gcgaccttgc gccaaacagg 600 aaggtggttg atgttcctat ttcgccatgg agtccctggt ctgaagtagt agattcatcc 660 tgtccatcct cgtcactgct ctcatcatac tcatcctcct cgacctcctc ctcgctgccc 720 ttactttcgt atccactctg tcgttcctcg acctcgttcc tcgagcccgg gcactctcct 780 cgaaacacca ccgtgcccac tggggtttcg gtacaggtgc attgcctttg atacatgaac 840 tccgacaaag taccatgctt ggtcatggtg gtctcttgac gcacgcggtt cgctgcctaa 900 ctgcggctcc ataggctgtc tgtctgtggt ttttattaca tattacacac gtctttatgc 960 agtttctcta aagaatctct aaataatcta aatacacaat cccgcgcacc gcagaacgac 1020 aaaaatcccg caataccgcg gtttgaaaag caaaaatctc gcacaccgta gggttcacga 1080 ataccgcatc accgcacgtk tgaaactttt ttaccgcaat accgcktaaa aatagcgcct 1140 ataccgcaaa ccccaacgtc ccccc 1165 // ID DNA-9-32_NV repbase; DNA; NEM; 169 BP. XX AC . XX DT 28-FEB-2011 (Rel. 16.03, Created) DT 28-FEB-2011 (Rel. 16.03, Last updated, Version 1) XX DE DNA-9-32_NV non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; 9-bp TSD; KW NVREP490; DNA-9-32_NV. XX OS Nematostella vectensis OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-169 RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., RA Salamov A., Terry A., Shapiro H. and Lindquist E. et al.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire RT and genomic organization."; RL Science 317(5834), 86-94 (2007). XX RN [2] RP 1-169 RA Kapitonov V.V. and Jurka J.; RT "Transposable elements in the starlet sea anemone genome."; RL Deposited to Repbase as the tmpnemrep.ref file (02-May-2008). XX RN [3] RP 1-169 RA Kapitonov V. and Jurka J.; RT "A family of DNA-9-32_NV non-autonomous DNA transposons from the RT starlet sea anemone genome."; RL Direct Submission to Repbase Update (28-FEB-2011). XX DR [3] (Consensus) XX CC Copies are 83-96% identical to the consensus. It was reported CC originally as the unclassified NVREP490 DNA transposon [1,2]. XX SQ Sequence 169 BP; 31 A; 41 C; 55 G; 42 T; 0 other; cagtctcgta cccagacgcc gcgcgatgca ttttggggag gttgaagaag cgcacggtgc 60 atgacggtca ggatgcggtt tcggggtcgg aattcgcttt ttttcgtctc cgcttcaggg 120 ttcctgtgga tgtccgcgca acagcaaata acgactgggt acgagtctg 169 //