/***************************************************************************** # Copyright (C) 1994-2008 by David Gordon. # All rights reserved. # # This software is part of a beta-test version of the Consed/Autofinish # package. It should not be redistributed or # used for any commercial purpose, including commercially funded # sequencing, without written permission from the author and the # University of Washington. # # This software is provided ``AS IS'' and any express or implied # warranties, including, but not limited to, the implied warranties of # merchantability and fitness for a particular purpose, are disclaimed. # In no event shall the authors or the University of Washington be # liable for any direct, indirect, incidental, special, exemplary, or # consequential damages (including, but not limited to, procurement of # substitute goods or services; loss of use, data, or profits; or # business interruption) however caused and on any theory of liability, # whether in contract, strict liability, or tort (including negligence # or otherwise) arising in any way out of the use of this software, even # if advised of the possibility of such damage. # # Building Consed from source is error prone and not simple which is # why I provide executables. Due to time limitations I cannot # provide any assistance in building Consed. Even if you do not # modify the source, you may introduce errors due to using a # different version of the compiler, a different version of motif, # different versions of other libraries than I used, etc. For this # reason, if you discover Consed bugs, I can only offer help with # those bugs if you first reproduce those bugs with an executable # provided by me--not an executable you have built. # # Modifying Consed is also difficult. Although Consed is modular, # some modules are used by many other modules. Thus making a change # in one place can have unforeseen effects on many other features. # It may takes months for you to notice these other side-effects # which may not seen connected at all. It is not feasable for me to # provide help with modifying Consed sources because of the # potentially huge amount of time involved. # #*****************************************************************************/ // // editaction.cpp // // implementation for edit actions // for now contains only defaults and overrides of refresh functions. // #include "editaction.h" #include "contigwin.h" #include "teditor.h" #include "consed.h" // required for g++ template instanciation or else will give error: // g++ -DANSI_C -w -I/usr/local/rogue -I/usr/X11R6/include -c editaction.cpp // /usr/local/rogue/rw/tpordvec.cc: In method `unsigned int RWTPtrOrderedVector::index(const class TedWin *) const': // /usr/local/rogue/rw/tpordvec.cc:93: no match for `TedWin & == const TedWin &' #include "tedwin.h" #include "consedParameters.h" EditAction :: EditAction() : nTypeID_( nEditAction ) { if ( ConsEd::pGetAssembly()->bReadOnly_ ) { ostringstream ost; ost << ConsEd::pGetAssembly()->soErrorMessageWhenTryToEditReadOnlyAssembly_ << ends; InputDataError ide( ost.str().c_str() ); throw ide; } } // called by the ConsEd for all Teditors after the edit has completed. // override this if derived edit action requires something special. void EditAction :: refreshContigWin(ContigWin* pContigWin) { // the default refresh is to generate a full exposure and redraw pContigWin->drawBasesAndConsensus( true ); // erase first } // called by the ContigWin for all its child Teditors after the edit // has completed. // override this if derived edit action requires something special. void EditAction :: refreshTeditor(Teditor* pTeditor) { pTeditor->refreshAllTedWins( false ); // if there is a need to recalculate base positions (such as // in case of adding a column of pads), this routine can be // overridden } void EditAction :: writeUndoEditToEditHistoryFile() { ConsEd :: pGetConsEd()->pAssemblyGet()->writeEditToEditHistoryFile( "undo" ); } void EditAction :: doEdit( const bool bWriteToEditHistoryFile ) { if ( pCP->bReadOnly_ && ( nTypeID_ != nEditComplementContig ) ) { RWCString soErrorMessage = "This process was started -read_only but now you are trying to edit it."; InputDataError ide( soErrorMessage ); throw ide; } doEditSpecific(); setChangedIfNecessary(); if ( bWriteToEditHistoryFile ) writeEditToEditHistoryFile(); }