/***************************************************************************** # Copyright (C) 1994-2008 by David Gordon. # All rights reserved. # # This software is part of a beta-test version of the Consed/Autofinish # package. It should not be redistributed or # used for any commercial purpose, including commercially funded # sequencing, without written permission from the author and the # University of Washington. # # This software is provided ``AS IS'' and any express or implied # warranties, including, but not limited to, the implied warranties of # merchantability and fitness for a particular purpose, are disclaimed. # In no event shall the authors or the University of Washington be # liable for any direct, indirect, incidental, special, exemplary, or # consequential damages (including, but not limited to, procurement of # substitute goods or services; loss of use, data, or profits; or # business interruption) however caused and on any theory of liability, # whether in contract, strict liability, or tort (including negligence # or otherwise) arising in any way out of the use of this software, even # if advised of the possibility of such damage. # # Building Consed from source is error prone and not simple which is # why I provide executables. Due to time limitations I cannot # provide any assistance in building Consed. Even if you do not # modify the source, you may introduce errors due to using a # different version of the compiler, a different version of motif, # different versions of other libraries than I used, etc. For this # reason, if you discover Consed bugs, I can only offer help with # those bugs if you first reproduce those bugs with an executable # provided by me--not an executable you have built. # # Modifying Consed is also difficult. Although Consed is modular, # some modules are used by many other modules. Thus making a change # in one place can have unforeseen effects on many other features. # It may takes months for you to notice these other side-effects # which may not seen connected at all. It is not feasable for me to # provide help with modifying Consed sources because of the # potentially huge amount of time involved. # #*****************************************************************************/ #ifndef guiEditResources_included #define guiEditResources_included #include #include "consedResources.h" #include "rwtvalorderedvector.h" class RWCString; class TextBox; class guiEditResources { public: consedResources resources_; Widget widPopupShell_; Widget widSaveButton_; Widget widCancelButton_; Widget widUserRadioButton_; Widget widProjectRadioButton_; Widget widAllUsersAllProjectsRadioButton_; Widget widClipWindow_; Widget widVerticalScrollBar_; Widget widScrolledWindow_; Widget widRowCol; Widget widPrimersSubcloneFullPathnameForm_; Widget widEnterParameter_; Pixel pixValueChangedForegroundColor_; Pixel pixValueChangedBackgroundColor_; Pixel pixValueUnchangedForegroundColor_; Pixel pixValueUnchangedBackgroundColor_; bool bAllTheWayUp_; bool bStandAlone_; RWTValOrderedVector aConsedResources_; int nIndexOfLastFoundResource_; Widget widPrintPSRadioBox_; Widget widPrintPSTrue_; Widget widDefaultTagType_; Widget widDefaultTagOnConsensusNotReadsRadioBox_; Widget widDefaultTagOnConsensusNotReadsTrue_; Widget widAutoFinishMinNumberOfErrorsFixedByAnExp_; Widget widAutoFinishRedundancy_; Widget widAutoFinishAverageInsertSize_; Widget widPrimersMaxInsertSizeOfASubclone_; Widget widPrimersMaxMeltingTemp_; Widget widPrimersMaxMeltingTempForPCR_; Widget widPrimersPickTemplatesForPrimersRadioBox_; Widget widPrimersPickTemplatesForPrimersTrue_; Widget widPrimersSubcloneFullPathnameOfFileOfSequencesForScreening_; Widget widPrimersCloneFullPathnameOfFileOfSequencesForScreening_; Widget widPrimersMinMeltingTemp_; Widget widPrimersMinMeltingTempForPCR_; Widget widSearchFunctionsUseUnalignedEndsOfReadsRadioBox_; Widget widSearchFunctionsUseUnalignedEndsOfReadsTrue_; Widget widSearchFunctionsUseLowQualityEndsOfReadsRadioBox_; Widget widSearchFunctionsUseLowQualityEndsOfReadsTrue_; Widget widInexactSearchForStringMaxPerCentMismatch_; Widget widOnlyAllowOneReadWriteConsedAtATimeRadioBox_; Widget widOnlyAllowOneReadWriteConsedAtATimeTrue_; Widget widAutoFinishAllowHighQualityDiscrepanciesInTemplateIfConsistentForwardReversePairRadioBox_; Widget widAutoFinishAllowHighQualityDiscrepanciesInTemplateIfConsistentForwardReversePairTrue_; Widget widPrintWindowCommand_; Widget widFileOfTagTypes_; Widget widAssemblyViewShowConsistentFwdRevPairsRadioBox_; Widget widAssemblyViewShowConsistentFwdRevPairsTrue_; Widget widAssemblyViewShowConsistentFwdRevPairDepthRadioBox_; Widget widAssemblyViewShowConsistentFwdRevPairDepthTrue_; Widget widAssemblyViewShowConsistentFwdRevPairsBetweenDifferentScaffoldsRadioBox_; Widget widAssemblyViewShowConsistentFwdRevPairsBetweenDifferentScaffoldsTrue_; Widget widAssemblyViewShowLegsOnSquaresForConsistentFwdRevPairsRadioBox_; Widget widAssemblyViewShowLegsOnSquaresForConsistentFwdRevPairsTrue_; Widget widAssemblyViewShowGapSpanningFwdRevPairsRadioBox_; Widget widAssemblyViewShowGapSpanningFwdRevPairsTrue_; Widget widAssemblyViewShowWhichInconsistentFwdRevPairs_; Widget widAssemblyViewShowReadDepthRadioBox_; Widget widAssemblyViewShowReadDepthTrue_; Widget widAssemblyViewShowMultipleHighQualityDiscrepanciesRadioBox_; Widget widAssemblyViewShowMultipleHighQualityDiscrepanciesTrue_; Widget widAssemblyViewShowRestrictionDigestCutSitesRadioBox_; Widget widAssemblyViewShowRestrictionDigestCutSitesTrue_; Widget widAssemblyViewFilterSequenceMatchesBySizeRadioBox_; Widget widAssemblyViewFilterSequenceMatchesBySizeTrue_; Widget widAssemblyViewSequenceMatchesMinSize_; Widget widAssemblyViewSequenceMatchesMaxSize_; Widget widAssemblyViewAutomaticallyStartWithConsedRadioBox_; Widget widAssemblyViewAutomaticallyStartWithConsedTrue_; Widget widAssemblyViewDisplayTheseTagTypesOnTheseLines_; Widget widAssemblyViewShowTagsRadioBox_; Widget widAssemblyViewShowTagsTrue_; Widget widAutoEditRecalculateHighQualitySegmentsOfReadsRadioBox_; Widget widAutoEditRecalculateHighQualitySegmentsOfReadsTrue_; Widget widAutoEditConvertCloneEndBasesToXsRadioBox_; Widget widAutoEditConvertCloneEndBasesToXsTrue_; Widget widAutoEditTellPhrapNotToOverlapMultiplyDiscrepantReadsRadioBox_; Widget widAutoEditTellPhrapNotToOverlapMultiplyDiscrepantReadsTrue_; Widget widAutoEditTagEditableLowConsensusQualityRegionsRadioBox_; Widget widAutoEditTagEditableLowConsensusQualityRegionsTrue_; Widget widAutoEditMakeFakeReadRadioBox_; Widget widAutoEditMakeFakeReadTrue_; Widget widAutoEditMakeFakeReadFromRead1_; Widget widAutoEditMakeFakeReadFromRead2_; Widget widAutoEditMakeFakeReadName_; Widget widAutoEditMakeFakeReadFastaFilename_; Widget widAutoEditMergeAssemblyRadioBox_; Widget widAutoEditMergeAssemblyTrue_; Widget widAutoEditSecondaryAceFile_; Widget widAutoEditFixRunsInConsensusRadioBox_; Widget widAutoEditFixRunsInConsensusTrue_; Widget widShowAllTracesJustShowGoodTracesRadioBox_; Widget widShowAllTracesJustShowGoodTracesTrue_; Widget widAddAlignedSequenceQualityOfBases_; Widget widMakeLightBackgroundInAlignedReadsWindowAndTracesWindowRadioBox_; Widget widMakeLightBackgroundInAlignedReadsWindowAndTracesWindowTrue_; Widget widPutVerticalLineAtCursorRadioBox_; Widget widPutVerticalLineAtCursorTrue_; Widget widPutHorizontalLineAtCursorRadioBox_; Widget widPutHorizontalLineAtCursorTrue_; Widget widHighlightedReadsFile_; Widget widAutoReportPrintReadNamesInRegionRadioBox_; Widget widAutoReportPrintReadNamesInRegionTrue_; Widget widAutoReportPrintReadNamesInRegionContig_; Widget widAutoReportPrintReadNamesInRegionLeftPos_; Widget widAutoReportPrintReadNamesInRegionRightPos_; Widget widAutoReportPrintHighlyDiscrepantRegionsRadioBox_; Widget widAutoReportPrintHighlyDiscrepantRegionsTrue_; Widget widAutoReportPrintScaffoldsRadioBox_; Widget widAutoReportPrintScaffoldsTrue_; Widget widNumberUnpaddedConsensusAtUserDefinedRadioBox_; Widget widNumberUnpaddedConsensusAtUserDefinedTrue_; Widget widAutoReportPrintHighQualityDiscrepanciesRadioBox_; Widget widAutoReportPrintHighQualityDiscrepanciesTrue_; Widget widAutoReportHighQualityDiscrepanciesExcludeCompressionOrG_dropoutTagsRadioBox_; Widget widAutoReportHighQualityDiscrepanciesExcludeCompressionOrG_dropoutTagsTrue_; Widget widAutoReportHighQualityDiscrepanciesExcludeMostPadsRadioBox_; Widget widAutoReportHighQualityDiscrepanciesExcludeMostPadsTrue_; Widget widAutoReportPrintLowConsensusQualityRegionsRadioBox_; Widget widAutoReportPrintLowConsensusQualityRegionsTrue_; Widget widAutoReportPrintSingleSubcloneRegionsRadioBox_; Widget widAutoReportPrintSingleSubcloneRegionsTrue_; Widget widAutoReportPrintSingleStrandedRegionsRadioBox_; Widget widAutoReportPrintSingleStrandedRegionsTrue_; Widget widAutoReportPrintLinkingForwardReversePairsRadioBox_; Widget widAutoReportPrintLinkingForwardReversePairsTrue_; Widget widAutoReportPrintFilteredInconsistentForwardReversePairsRadioBox_; Widget widAutoReportPrintFilteredInconsistentForwardReversePairsTrue_; Widget widAutoReportPrintAssemblySummaryRadioBox_; Widget widAutoReportPrintAssemblySummaryTrue_; Widget widShowAllTracesDoNotShowTraceIfTheseTagsPresent_; Widget widNameOfFakeJoiningReadsIncludesAceFileNameRadioBox_; Widget widNameOfFakeJoiningReadsIncludesAceFileNameTrue_; Widget widWhenUserScrollsOffWindowMillisecondsBetweenScrolling_; Widget widWhenUserScrollsOffWindowBasesToScrollEachTime_; Widget widCompareContigsUseBandedRatherThanFullSmithWatermanRadioBox_; Widget widCompareContigsUseBandedRatherThanFullSmithWatermanTrue_; Widget widCompareContigsBandSize_; Widget widAssemblyViewShowFwdRevPairDepthsInRedIfOnlyThisMany_; Widget widAssemblyViewShowSequenceMatchesRadioBox_; Widget widAssemblyViewShowSequenceMatchesTrue_; Widget widAssemblyViewOKToShowSequenceMatchesBetweenContigsRadioBox_; Widget widAssemblyViewOKToShowSequenceMatchesBetweenContigsTrue_; Widget widAssemblyViewOKToShowSequenceMatchesWithinContigsRadioBox_; Widget widAssemblyViewOKToShowSequenceMatchesWithinContigsTrue_; Widget widAssemblyViewOKToShowDirectSequenceMatchesRadioBox_; Widget widAssemblyViewOKToShowDirectSequenceMatchesTrue_; Widget widAssemblyViewOKToShowInvertedSequenceMatchesRadioBox_; Widget widAssemblyViewOKToShowInvertedSequenceMatchesTrue_; Widget widAssemblyViewOnlyShowSequenceMatchesToAParticularRegionRadioBox_; Widget widAssemblyViewOnlyShowSequenceMatchesToAParticularRegionTrue_; Widget widAssemblyViewOnlyShowSequenceMatchesToThisContig_; Widget widAssemblyViewOnlyShowSequenceMatchesToThisRegionLeft_; Widget widAssemblyViewOnlyShowSequenceMatchesToThisRegionRight_; Widget widAssemblyViewOnlyShowSequenceMatchesToEndsOfContigsRadioBox_; Widget widAssemblyViewOnlyShowSequenceMatchesToEndsOfContigsTrue_; Widget widAssemblyViewOnlyShowSequenceMatchesToEndsOfContigsThisFar_; Widget widDefaultReadPrefix_; Widget widReadPrefixesFile_; Widget widMaxCharsDisplayedForReadPrefix_; Widget widAutoFinishDoNotDoPCRIfThisManyAvailableGapSpanningTemplates_; Widget widAutoFinishDoNotDoUnorientedPCRIfThisManyOrMoreUnorientedPCRReactions_; Widget widAutoFinishDoNotDoOrientedPCRIfGapSizeLargerThanThis_; Widget widAutoFinishDoNotDoPCRIfEndIsExtendedByReadsRadioBox_; Widget widAutoFinishDoNotDoPCRIfEndIsExtendedByReadsTrue_; Widget widAutoFinishMaxAcceptableErrorsPerMegabase_; Widget widAutoFinishIfNotEnoughFwdRevPairsUseThisPerCentOfInsertSize_; Widget widPrimersNumberOfBasesToBackUpToStartLooking_; Widget widPrimersMakePCRPrimersThisManyBasesBackFromEndOfHighQualitySegment_; Widget widPrimersOKToChoosePrimersInSingleSubcloneRegionRadioBox_; Widget widPrimersOKToChoosePrimersInSingleSubcloneRegionTrue_; Widget widPrimersOKToChoosePrimersWhereHighQualityDiscrepanciesRadioBox_; Widget widPrimersOKToChoosePrimersWhereHighQualityDiscrepanciesTrue_; Widget widPrimersOKToChoosePrimersWhereUnalignedHighQualityRegionRadioBox_; Widget widPrimersOKToChoosePrimersWhereUnalignedHighQualityRegionTrue_; Widget widAutoFinishCallReversesToFlankGapsRadioBox_; Widget widAutoFinishCallReversesToFlankGapsTrue_; Widget widAutoFinishAllowWholeCloneReadsRadioBox_; Widget widAutoFinishAllowWholeCloneReadsTrue_; Widget widAutoFinishAllowCustomPrimerSubcloneReadsRadioBox_; Widget widAutoFinishAllowCustomPrimerSubcloneReadsTrue_; Widget widAutoFinishAllowResequencingReadsRadioBox_; Widget widAutoFinishAllowResequencingReadsTrue_; Widget widAutoFinishAllowResequencingReadsOnlyForRunsAndStopsRadioBox_; Widget widAutoFinishAllowResequencingReadsOnlyForRunsAndStopsTrue_; Widget widAutoFinishAllowDeNovoUniversalPrimerSubcloneReadsRadioBox_; Widget widAutoFinishAllowDeNovoUniversalPrimerSubcloneReadsTrue_; Widget widAutoFinishAllowMinilibrariesRadioBox_; Widget widAutoFinishAllowMinilibrariesTrue_; Widget widAutoFinishAllowPCRRadioBox_; Widget widAutoFinishAllowPCRTrue_; Widget widAutoFinishAllowUnorientedPCRReactionsRadioBox_; Widget widAutoFinishAllowUnorientedPCRReactionsTrue_; Widget widAutoFinishAllowResequencingAUniversalPrimerAutofinishReadRadioBox_; Widget widAutoFinishAllowResequencingAUniversalPrimerAutofinishReadTrue_; Widget widAutoFinishAlwaysCloseGapsUsingMinilibrariesRadioBox_; Widget widAutoFinishAlwaysCloseGapsUsingMinilibrariesTrue_; Widget widAutoFinishMaximumFinishingReadLength_; Widget widAutoFinishSuggestMinilibraryIfGapThisManyBasesOrLarger_; Widget widAutoFinishSuggestSpecialChemistryForRunsAndStopsRadioBox_; Widget widAutoFinishSuggestSpecialChemistryForRunsAndStopsTrue_; Widget widAutoFinishSuggestThisManyMinilibrariesPerGap_; Widget widPrimersWindowSizeInLooking_; Widget widPrimersAssumeTemplatesAreDoubleStrandedUnlessSpecifiedRadioBox_; Widget widPrimersAssumeTemplatesAreDoubleStrandedUnlessSpecifiedTrue_; Widget widAlignedReadsWindowInitialCharsWide_; Widget widAlignedReadsWindowInitialCharsHigh_; Widget widAlignedReadsWindowMaxCharsForReadNames_; Widget widAlignedReadsWindowAutomaticallyExpandRoomForReadNamesRadioBox_; Widget widAlignedReadsWindowAutomaticallyExpandRoomForReadNamesTrue_; Widget widAutoFinishAllowResequencingReadsToExtendContigsRadioBox_; Widget widAutoFinishAllowResequencingReadsToExtendContigsTrue_; Widget widAutoFinishCallHowManyReversesToFlankGaps_; Widget widAutoFinishCloseGapsRadioBox_; Widget widAutoFinishCloseGapsTrue_; Widget widAutoFinishContinueEvenThoughReadInfoDoesNotMakeSenseRadioBox_; Widget widAutoFinishContinueEvenThoughReadInfoDoesNotMakeSenseTrue_; Widget widAutoFinishCostOfResequencingUniversalPrimerSubcloneReaction_; Widget widAutoFinishCostOfCustomPrimerSubcloneReaction_; Widget widAutoFinishCostOfCustomPrimerCloneReaction_; Widget widAutoFinishCostOfDeNovoUniversalPrimerSubcloneReaction_; Widget widAutoFinishCostOfMinilibrary_; Widget widAutoFinishCoverSingleSubcloneRegionsRadioBox_; Widget widAutoFinishCoverSingleSubcloneRegionsTrue_; Widget widAutoFinishCoverLowConsensusQualityRegionsRadioBox_; Widget widAutoFinishCoverLowConsensusQualityRegionsTrue_; Widget widAutoFinishDebugUniversalPrimerReadsFile_; Widget widAutoFinishDebugCustomPrimerReadsFile_; Widget widAutoFinishDoNotAllowSubcloneCustomPrimerReadsCloserThanThisManyBases_; Widget widAutoFinishDoNotAllowWholeCloneCustomPrimerReadsCloserThanThisManyBases_; Widget widAutoFinishDoNotFinishWhereTheseTagsAre_; Widget widAutoFinishDoNotExtendContigsWhereTheseTagsAre_; Widget widAutoFinishDoNotExtendContigsIfTagsAreThisCloseToContigEnd_; Widget widDumpContigOrderAndOrientationInfoToThisFile_; Widget widAutoFinishDumpTemplatesRadioBox_; Widget widAutoFinishDumpTemplatesTrue_; Widget widAutoFinishExcludeContigIfOnlyThisManyReadsOrLess_; Widget widAutoFinishExcludeContigIfDepthOfCoverageGreaterThanThis_; Widget widAutoFinishExcludeContigIfThisManyBasesOrLess_; Widget widAutoFinishHowManyTemplatesYouIntendToUseForCustomPrimerSubcloneReactions_; Widget widPrimersMinNumberOfTemplatesForPrimers_; Widget widAutoFinishMinBaseOverlapBetweenAReadAndHighQualitySegmentOfConsensus_; Widget widAutoFinishNumberOfVectorBasesAtBeginningOfAUniveralPrimerRead_; Widget widAutoFinishCDNANotGenomicRadioBox_; Widget widAutoFinishCDNANotGenomicTrue_; Widget widAutoFinishConfidenceThatReadWillCoverSingleSubcloneRegion_; Widget widAutoFinishPrintForwardOrReverseStrandWhenPrintingSubcloneTemplatesForCustomPrimerReadsRadioBox_; Widget widAutoFinishPrintForwardOrReverseStrandWhenPrintingSubcloneTemplatesForCustomPrimerReadsTrue_; Widget widAutoFinishPrintMinilibrariesSummaryFileRadioBox_; Widget widAutoFinishPrintMinilibrariesSummaryFileTrue_; Widget widAutoFinishNearGapsSuggestEachMissingReadOfReadPairsRadioBox_; Widget widAutoFinishNearGapsSuggestEachMissingReadOfReadPairsTrue_; Widget widAutoFinishDoNotIgnoreLCQIfThisManyBasesFromEndOfContigForLCQTagger_; Widget widCheckIfTooManyWalksRadioBox_; Widget widCheckIfTooManyWalksTrue_; Widget widNumberOfColumnsBeforeReadNameInAlignedReadsWindow_; Widget widCompareContigsAlignsThisManyBasesMax_; Widget widCompressedChromatExtension_; Widget widDimLowQualityEndsOfReadsRadioBox_; Widget widDimLowQualityEndsOfReadsTrue_; Widget widDimUnalignedEndsOfReadsRadioBox_; Widget widDimUnalignedEndsOfReadsTrue_; Widget widFakeReadsSpecifiedByFilenameExtensionRadioBox_; Widget widFakeReadsSpecifiedByFilenameExtensionTrue_; Widget widFullPathnameOfAddReads2ConsedScript_; Widget widFullPathnameOfFixContigEndScript_; Widget widFixContigEndsCleanUpTemporaryFilesRadioBox_; Widget widFixContigEndsCleanUpTemporaryFilesTrue_; Widget widFixContigEndsMinSmithWatermanScoreToMakeJoin_; Widget widFixContigEndsMinNumberOfReadsInContig_; Widget widFullPathnameOfCrossMatch_; Widget widFullPathnameOfPhred_; Widget widFullPathnameOfMiniassemblyScript_; Widget widGunzipFullPath_; Widget widFullPathnameOfFilter454ReadsScript_; Widget widFilter454ReadsAgainstThis_; Widget wid454LinkerSequences_; Widget widHideSomeTagTypesAtStartupRadioBox_; Widget widHideSomeTagTypesAtStartupTrue_; Widget widMaximumNumberOfTracesShown_; Widget widNavigateAutomaticTracePopupRadioBox_; Widget widNavigateAutomaticTracePopupTrue_; Widget widNavigateAutomaticAllTracesPopupRadioBox_; Widget widNavigateAutomaticAllTracesPopupTrue_; Widget widPrimersMinimumLengthOfAPrimer_; Widget widPrimersMaximumLengthOfAPrimer_; Widget widPrimersMinimumLengthOfAPrimerForPCR_; Widget widPrimersMaximumLengthOfAPrimerForPCR_; Widget widPrimersMaxMeltingTempDifferenceForPCR_; Widget widPrimersMaxPCRPrimerPairsToDisplay_; Widget widPrimersCheckJustSomePCRPrimerPairsRatherThanAllRadioBox_; Widget widPrimersCheckJustSomePCRPrimerPairsRatherThanAllTrue_; Widget widPrimersNumberOfTemplatesToDisplayInFront_; Widget widPrimersMaxLengthOfMononucleotideRepeat_; Widget widPrimersBadLibrariesFile_; Widget widPrimersLibrariesInfoFile_; Widget widPrimersBadTemplatesFile_; Widget widPrimersChooseTemplatesByPositionInsteadOfQualityRadioBox_; Widget widPrimersChooseTemplatesByPositionInsteadOfQualityTrue_; Widget widPrimersWhenChoosingATemplateMinPotentialReadLength_; Widget widPrimersWindowSizeInLookingForPCR_; Widget widQualityThresholdForFindingHighQualityDiscrepancies_; Widget widQualityThresholdForNavigateByDepthOfCoverage_; Widget widNavigateByHighDepthOfCoverageNotLowRadioBox_; Widget widNavigateByHighDepthOfCoverageNotLowTrue_; Widget widMinDepthForNavigateByDepthOfCoverage_; Widget widDefaultVectorPathnameForRestrictionFragments_; Widget widFileOfAdditionalRestrictionEnzymes_; Widget widCommonRestrictionEnzymes_; Widget widDefaultSelectedRestrictionEnzymes_; Widget widRestrictionEnzymesActualFragmentsFile_; Widget widRestrictionDigestInitialWindowSizeInTextRows_; Widget widRestrictionDigestDoNoShowAreaOfFragmentsOverThisSize_; Widget widShowReadsAlphabeticallyRadioBox_; Widget widShowReadsAlphabeticallyTrue_; Widget widShowReadsInAlignedReadsWindowOrderedByFileRadioBox_; Widget widShowReadsInAlignedReadsWindowOrderedByFileTrue_; Widget widShowReadsInAlignedReadsWindowOrderedByThisFile_; Widget widShowReadsAtCursorSortedHow_; Widget widShowABIBasesInTraceWindowRadioBox_; Widget widShowABIBasesInTraceWindowTrue_; Widget widTracesWindowInitialPixelHeight_; Widget widAssemblyViewWindowInitialPixelHeight_; Widget widAssemblyViewFileOfTemplatesToNotShow_; Widget widAssemblyViewCrossMatchMinmatch_; Widget widAssemblyViewCrossMatchMinscore_; Widget widAssemblyViewFindSequenceMatchesForConsedScript_; Widget widAssemblyViewCrossmatchMinmatch_; Widget widAssemblyViewCrossmatchMinscore_; Widget widAssemblyViewSequenceMatchesMinimumSimilarity_; Widget widTracesWindowInitialPixelWidth_; Widget widAssemblyViewWindowInitialPixelWidth_; Widget widAutomaticallyScaleTracesRadioBox_; Widget widAutomaticallyScaleTracesTrue_; Widget widAutomaticallyScaleTracesSamplePeakHeightFractionOfWindowHeight_; Widget widAutomaticallyScaleTracesSamplePeakPercentile_; Widget widVerticalTraceMagnification_; Widget widUserDefinedKeys_; Widget widProgramsForUserDefinedKeys_; Widget widArgumentsToPassToUserDefinedPrograms_; Widget widTagsToApplyWithUserDefinedKeys_; Widget widSnpGenomeUseInsertionPolymorphismsRadioBox_; Widget widSnpGenomeUseInsertionPolymorphismsTrue_; Widget widListOfTagTypesToHide_; Widget widListOfOptionalWordsToSaveInListOfReadNames_; Widget widExtendConsensusWithHighQualityRadioBox_; Widget widExtendConsensusWithHighQualityTrue_; Widget widFastStartupRadioBox_; Widget widFastStartupTrue_; Widget widFastStartupFile_; Widget widAlwaysRunProgramToGetChromats_; Widget widProgramToRunToGetChromats_; Widget widProgramToRunToGetChromatsOf454Reads_; Widget widCreateFakeChromatsForSolexaReadsRadioBox_; Widget widCreateFakeChromatsForSolexaReadsTrue_; Widget widAutoFinishUseLongModelReadRatherThanShortRadioBox_; Widget widAutoFinishUseLongModelReadRatherThanShortTrue_; Widget widAskAgainIfWantToQuitConsedIfThisManyReads_; Widget widPrintWindowInstructions_; Widget widAllowMultipleSearchForStringWindowsRadioBox_; Widget widAllowMultipleSearchForStringWindowsTrue_; Widget widAutoPCRAmplifyFalseProductsOKIfLargerThanThis_; Widget widAutoPCRAmplifyMakePrimerOutOfFirstRegionRadioBox_; Widget widAutoPCRAmplifyMakePrimerOutOfFirstRegionTrue_; Widget widAutoPCRAmplifyMaybeRejectPrimerIfThisCloseToDesiredProduct_; Widget widAddNewReadsRecalculateConsensusQualityRadioBox_; Widget widAddNewReadsRecalculateConsensusQualityTrue_; Widget widAddNewReadsPutReadIntoItsOwnContig_; Widget widAddNewReadsCheckThatCrossMatchRunCorrectlyRadioBox_; Widget widAddNewReadsCheckThatCrossMatchRunCorrectlyTrue_; Widget widAssemblyViewNumberOfRowsOfTags_; Widget widWarnUserWhenTryingToEditAllReadsRadioBox_; Widget widWarnUserWhenTryingToEditAllReadsTrue_; Widget widMaybeXKEYSYMDBPath_; Widget widMaybeXKEYSYMDBPath2_; Widget widAmountToMoveWithBigLeftAndRightArrows_; Widget widNavigateByHighlyDiscrepantPositionsMinDiscrepantReads_; Widget widNavigateByHighlyDiscrepantPositionsMaxDepthOfCoverage_; Widget widNavigateByHighlyDiscrepantPositionsIgnoreBasesBelowThisQuality_; Widget widNavigateByHighlyDiscrepantPositionsJustListIndelsRadioBox_; Widget widNavigateByHighlyDiscrepantPositionsJustListIndelsTrue_; Widget widNavigateByHighlyDiscrepantPositionsIgnoreOtherReadsStartingAtSameLocationRadioBox_; Widget widNavigateByHighlyDiscrepantPositionsIgnoreOtherReadsStartingAtSameLocationTrue_; Widget widNavigateByHighlyDiscrepantPositionsIgnoreIfListedBasesInConsensusRadioBox_; Widget widNavigateByHighlyDiscrepantPositionsIgnoreIfListedBasesInConsensusTrue_; Widget widNavigateByHighlyDiscrepantPositionsIgnoreIfTheseBasesInConsensus_; Widget widPhdBallDirectory_; Widget widNewAceFileFOF_; Widget widNavigateByHighOrLowDepthCoalesceRegionsIfThisClose_; Widget widRemoveReadsDeleteNotJustPutInOwnContigRadioBox_; Widget widRemoveReadsDeleteNotJustPutInOwnContigTrue_; Widget widPaired454LeftReadExtension_; Widget widPaired454RightReadExtension_; Widget widSnpGenome1MSnps_; Widget widDiffChromosomesExcludeDeletionsRadioBox_; Widget widDiffChromosomesExcludeDeletionsTrue_; Widget widSnpGenomeFilterByWeightRadioBox_; Widget widSnpGenomeFilterByWeightTrue_; Widget widWantReadsUpToThisFarFromSnps_; Widget widPhaster2PhdBallSaveWhichMate_; Widget widPhaster2PhdBallSaveInPhasterFormatRadioBox_; Widget widPhaster2PhdBallSaveInPhasterFormatTrue_; Widget widPhaster2PhdBallCalculateNewLocationsFileRadioBox_; Widget widPhaster2PhdBallCalculateNewLocationsFileTrue_; Widget widPhdBall2FastaIgnoreLowQualityReadsRadioBox_; Widget widPhdBall2FastaIgnoreLowQualityReadsTrue_; Widget widPhdBall2FastaLowestAverageQuality_; Widget widNextPhredPipelineControlFile_; Widget widNextPhredPipelineTiffPerlScript_; Widget widNextPhredPipelinePhasterPerlScript_; Widget widNextPhredPipelineVersion_; Widget widNextPhredPipelineMainDirectory_; Widget widMaxNumberOfReadsPerPhdBall_; Widget widUserWantsToSaveToThisAceFile_; Widget widAutoFinishEmulate9_66BehaviorRadioBox_; Widget widAutoFinishEmulate9_66BehaviorTrue_; Widget widPrimersPCRPrimersGroupedIntoWindowOfThisManyBases_; Widget widPrimersLookForThisManyPCRPrimerPairsPerPairOfGroups_; Widget widAutoFinishStandardDeviationsFromMeanFromGapToLookForTemplatesForSuggestingEachMissingReadOfReadPairs_; Widget widAutoFinishCheckThatReadsFromTheSameTemplateAreConsistentRadioBox_; Widget widAutoFinishCheckThatReadsFromTheSameTemplateAreConsistentTrue_; Widget widAutoFinishDoNotAllowSubcloneCustomPrimerReadsCloseTogetherRadioBox_; Widget widAutoFinishDoNotAllowSubcloneCustomPrimerReadsCloseTogetherTrue_; Widget widAutoFinishDoNotAllowWholeCloneCustomPrimerReadsCloseTogetherRadioBox_; Widget widAutoFinishDoNotAllowWholeCloneCustomPrimerReadsCloseTogetherTrue_; Widget widAutoFinishMinilibrariesPreferTemplateIfSizeThisManyStdDevsFromMean_; Widget widAutoFinishMinNumberOfForwardReversePairsInLibraryToCalculateAverageInsertSize_; Widget widAutoFinishIfEnoughFwdRevPairsUseThisManyStdDevBelowMeanForInsertSize_; Widget widAutoFinishNewCustomPrimerReadThisFarFromOldCustomPrimerRead_; Widget widAutoFinishMinNumberOfSingleSubcloneBasesFixedByAnExp_; Widget widAutoFinishNumberOfBasesBetweenContigsAssumed_; Widget widAutoFinishPotentialHighQualityPartOfReadStart_; Widget widAutoFinishPotentialHighQualityPartOfReadEnd_; Widget widAutoFinishPrintCustomNavigationFileForChosenReadsRadioBox_; Widget widAutoFinishPrintCustomNavigationFileForChosenReadsTrue_; Widget widAutoFinishReversesForFlankingGapsTemplateMustProtrudeFromContigThisMuch_; Widget widAutoFinishTagOligosWhenDoExperimentsRadioBox_; Widget widAutoFinishTagOligosWhenDoExperimentsTrue_; Widget widCountPadsRadioBox_; Widget widCountPadsTrue_; Widget widDebugging_; Widget widDebugging2_; Widget widDebugging3_; Widget widDebuggingString_; Widget widIgnoreHighQualityDiscrepanciesThisManyBasesFromEndOfAlignedRegion_; Widget widIgnoreUnalignedHighQualitySegmentsShorterThanThis_; Widget widPrimersLookThisFarForForwardVectorInsertJunction_; Widget widPrimersDNAConcentrationNanomolar_; Widget widPrimersMaxMatchElsewhereScore_; Widget widPrimersMaxMatchElsewhereScoreForPCR_; Widget widPrimersMaxSelfMatchScore_; Widget widPrimersMaxPrimerDimerScoreForPCR_; Widget widPrimersMinQuality_; Widget widPrimersPrintInfoOnRejectedTemplatesRadioBox_; Widget widPrimersPrintInfoOnRejectedTemplatesTrue_; Widget widPrimersSaltConcentrationMillimolar_; Widget widPrimersScreenForVectorRadioBox_; Widget widPrimersScreenForVectorTrue_; Widget widPrimersToleranceForDifferentBeginningLocationOfUniversalPrimerReads_; Widget widPrimersTooManyVectorBasesInWalkingRead_; Widget widQualityThresholdForLowConsensusQuality_; Widget widTagColorPerCentOfBase_; Widget widUncompressedChromatDirectory_; Widget wid454sff2scfDirectory_; Widget widWhenMakingFakeReadToJoinContigsAddThisManyBasesOnEitherSideOfAlignedRegion_; Widget widWriteThisAceFormat_; Widget widDumpCoreIfBoundsErrorRadioBox_; Widget widDumpCoreIfBoundsErrorTrue_; Widget widAutoFinishMinSmithWatermanScoreOfARun_; Widget widAutoFinishDoNotComparePCRPrimersMoreThanThisManyTimes_; Widget widRestrictionDigestMaximumBasesToCompareToVector_; Widget widRestrictionDigestZoomFactor_; Widget widRestrictionDigestZoomFactorForNavigate_; Widget widRestrictionDigestToleranceInPositionUnits_; Widget widAutoPCRAmplifyTooManySeriousFalseMatches_; Widget widAssemblyViewZoomFactor_; Widget widAssemblyViewFilterInconsistentFwdRevPairsIfThisClose_; Widget widAssemblyViewGridCellWidthInPixels_; Widget widAssemblyViewCursorSensitivityInPixels_; Widget widAssemblyViewReadDepthQuality_; Widget widShowAllTracesMaxNumberOfTracesToShowAtOnce_; Widget widAllowFwdRevPairScaffoldsToBeMergedIfThisManyBasesIntersectionOrLess_; Widget widJustForPrimateProjectRadioBox_; Widget widJustForPrimateProjectTrue_; Widget widSolexaFilesAreAssumedToBeHere_; Widget widSolexaAlignmentFilesPerInsertingPadsCycle_; Widget widSolexaAlignmentsPerAlignmentFile_; Widget widSolexaFastqFilesArePhredQualityNotSolexaQualityRadioBox_; Widget widSolexaFastqFilesArePhredQualityNotSolexaQualityTrue_; Widget widSolexa64FastqOrSanger33Fastq_; Widget widMaximumReadsInReadList_; Widget widMaxLengthOfReadsInapLocatedFragment2_; Widget widMaximumStartupErrorsToReport_; Widget wid454LinkerAlignmentMatchScore_; Widget wid454LinkerAlignmentMismatchScore_; Widget wid454LinkerAlignmentIndelScore_; Widget widFilter454ReadsDeleteCrossMatchOutputRadioBox_; Widget widFilter454ReadsDeleteCrossMatchOutputTrue_; Widget widAutoReportAllNeededSpeciesCode_; Widget widAutoReportUseCommasInBigNumbersRadioBox_; Widget widAutoReportUseCommasInBigNumbersTrue_; Widget widAutoReportPrintToCompareToReichRadioBox_; Widget widAutoReportPrintToCompareToReichTrue_; Widget widAutoReportOnlyAllowSitesThatAreBetweenAcceptableSitesRadioBox_; Widget widAutoReportOnlyAllowSitesThatAreBetweenAcceptableSitesTrue_; Widget widAutoReportDeaminationMutationsDeterminedByMoreAccurateMethodRadioBox_; Widget widAutoReportDeaminationMutationsDeterminedByMoreAccurateMethodTrue_; Widget widAutoReportChooseTreesUsingBadDataRadioBox_; Widget widAutoReportChooseTreesUsingBadDataTrue_; Widget widAutoReportChooseTreesByCountingDeaminationMutationsRadioBox_; Widget widAutoReportChooseTreesByCountingDeaminationMutationsTrue_; Widget widAutoReportChooseTreesUsingKimuraRadioBox_; Widget widAutoReportChooseTreesUsingKimuraTrue_; Widget widAutoReportPrintCrudeChimpHumanMutationsRadioBox_; Widget widAutoReportPrintCrudeChimpHumanMutationsTrue_; Widget widAutoReportPrintPositionsForGrahamRadioBox_; Widget widAutoReportPrintPositionsForGrahamTrue_; Widget widAutoReportPrintAncestralCpGsRadioBox_; Widget widAutoReportPrintAncestralCpGsTrue_; Widget widAutoReportPrintCpGMutationsRadioBox_; Widget widAutoReportPrintCpGMutationsTrue_; Widget widAutoReportPrintMutationsWithContextRadioBox_; Widget widAutoReportPrintMutationsWithContextTrue_; Widget widAutoReportCountAllMutationsMLRadioBox_; Widget widAutoReportCountAllMutationsMLTrue_; Widget widAutoReportCountAllMutationsRadioBox_; Widget widAutoReportCountAllMutationsTrue_; Widget widAutoReportIgnoreMultipleTreesRadioBox_; Widget widAutoReportIgnoreMultipleTreesTrue_; Widget widAutoReportCountAcceptableColumnsWithNoneOnLeftRadioBox_; Widget widAutoReportCountAcceptableColumnsWithNoneOnLeftTrue_; Widget widAutoReportPrintFlankedColumns4RadioBox_; Widget widAutoReportPrintFlankedColumns4True_; Widget widAutoReportUseAnnotationFormatRadioBox_; Widget widAutoReportUseAnnotationFormatTrue_; Widget widAutoReportPrintFlankedColumns3RadioBox_; Widget widAutoReportPrintFlankedColumns3True_; Widget widAutoReportPrintFlankedColumns2RadioBox_; Widget widAutoReportPrintFlankedColumns2True_; Widget widAutoReportPrintFlankedColumnsRadioBox_; Widget widAutoReportPrintFlankedColumnsTrue_; Widget widAutoReportHighQualitySegmentDataRadioBox_; Widget widAutoReportHighQualitySegmentDataTrue_; Widget widAutoReportGoodReadsBugRadioBox_; Widget widAutoReportGoodReadsBugTrue_; Widget widAutoReportDiscrepancyRateInFlankedRegionsRadioBox_; Widget widAutoReportDiscrepancyRateInFlankedRegionsTrue_; Widget widAutoReportDiscrepancyRateInFlankedRegions2RadioBox_; Widget widAutoReportDiscrepancyRateInFlankedRegions2True_; Widget widAutoReportDiscrepancyRateInFlankedRegions4RadioBox_; Widget widAutoReportDiscrepancyRateInFlankedRegions4True_; Widget widAutoReportDiscrepancyRateInFlankedRegions5RadioBox_; Widget widAutoReportDiscrepancyRateInFlankedRegions5True_; Widget widAutoReportSingleSignalOrQualityRadioBox_; Widget widAutoReportSingleSignalOrQualityTrue_; Widget widAutoReportLowQualityBasesInHQSRadioBox_; Widget widAutoReportLowQualityBasesInHQSTrue_; Widget widAutoReportCompareHQSWithLQSRadioBox_; Widget widAutoReportCompareHQSWithLQSTrue_; Widget widAutoReportCountColumnsForGroupsOfSpeciesRadioBox_; Widget widAutoReportCountColumnsForGroupsOfSpeciesTrue_; Widget widAutoReportSingleSignalInfoRadioBox_; Widget widAutoReportSingleSignalInfoTrue_; Widget widAutoReportSingleSignalInfo2RadioBox_; Widget widAutoReportSingleSignalInfo2True_; Widget widAutoReportCompareTopAndBottomStrandsRadioBox_; Widget widAutoReportCompareTopAndBottomStrandsTrue_; Widget widAutoReportCompareTopAndBottomStrandsNoHumanRadioBox_; Widget widAutoReportCompareTopAndBottomStrandsNoHumanTrue_; Widget widAutoReportCompareTopAndBottomStrands2RadioBox_; Widget widAutoReportCompareTopAndBottomStrands2True_; Widget widAutoReportCompareTopAndBottomStrands3RadioBox_; Widget widAutoReportCompareTopAndBottomStrands3True_; Widget widAutoReportCompareTopAndBottomStrands4RadioBox_; Widget widAutoReportCompareTopAndBottomStrands4True_; Widget widAutoReportTopStrandPinnedPosition_; Widget widAutoReportBottomStrandPinnedPosition_; Widget widAutoReportCompareTopAndBottomStrandsWithHumanRadioBox_; Widget widAutoReportCompareTopAndBottomStrandsWithHumanTrue_; Widget widAutoReportPrintLengthsOfAlignedSegmentsOfReadsRadioBox_; Widget widAutoReportPrintLengthsOfAlignedSegmentsOfReadsTrue_; Widget widAutoReportPrintLengthsOfUnalignedHighQualitySegmentsOfReadsRadioBox_; Widget widAutoReportPrintLengthsOfUnalignedHighQualitySegmentsOfReadsTrue_; Widget widAutoReportPrintIfReadsAreCorrectlyAlignedRadioBox_; Widget widAutoReportPrintIfReadsAreCorrectlyAlignedTrue_; Widget widAutoReportCalculateErrorProbabilitiesByComparingPTroPPanRadioBox_; Widget widAutoReportCalculateErrorProbabilitiesByComparingPTroPPanTrue_; Widget widAutoReportPrintAgreeDisagreeBetweenPairsOfSpeciesRadioBox_; Widget widAutoReportPrintAgreeDisagreeBetweenPairsOfSpeciesTrue_; Widget widAutoReportPrintAgreeDisagreeBetweenPairsOfSpecies2RadioBox_; Widget widAutoReportPrintAgreeDisagreeBetweenPairsOfSpecies2True_; Widget widAutoReportFilterSingleSignalRadioBox_; Widget widAutoReportFilterSingleSignalTrue_; Widget widAutoReportGoodHitReads_; Widget widAutoReportQualityWindowLow_; Widget widAutoReportQualityWindowHigh_; Widget widAutoReportPrintNumberOfIsolatedPadsForEachSpeciesRadioBox_; Widget widAutoReportPrintNumberOfIsolatedPadsForEachSpeciesTrue_; Widget widAutoReportPrintNumberOfIsolatedPadsRadioBox_; Widget widAutoReportPrintNumberOfIsolatedPadsTrue_; Widget widAutoReportIsolatedPadsOfReadsWithThisPattern_; Widget widAutoReportMinNumberOfPerfectlyAlignedBasesBeforeDiscrepancy_; Widget widAutoReportMaxSizeOfDiscrepantRegion_; Widget widAutoReportSizeOfDiscrepantRegion_; Widget widAutoReportPrintMinimumQualityHistogramRadioBox_; Widget widAutoReportPrintMinimumQualityHistogramTrue_; Widget widAutoReportPrintDiscrepantRegionsRadioBox_; Widget widAutoReportPrintDiscrepantRegionsTrue_; Widget widAutoReportPrintBasesInDiscrepantRegionsRadioBox_; Widget widAutoReportPrintBasesInDiscrepantRegionsTrue_; Widget widAutoReportPrintDiscrepantRegionsButIgnoreReadsContainingThis_; Widget widAutoReportBackboneReadHasThisStringInIt_; Widget widAutoReportPrintDiscrepantRegionsButOnlyIfAboveQualityThresholdRadioBox_; Widget widAutoReportPrintDiscrepantRegionsButOnlyIfAboveQualityThresholdTrue_; Widget widAutoReportPrintSpeciesAlignmentRadioBox_; Widget widAutoReportPrintSpeciesAlignmentTrue_; Widget widAutoReportPrintReadAlignmentRadioBox_; Widget widAutoReportPrintReadAlignmentTrue_; Widget widAutoReportPrintTheseReads_; Widget widAutoReportPrintReadPositionsRadioBox_; Widget widAutoReportPrintReadPositionsTrue_; Widget widAutoReportPrintChosenReadNameRadioBox_; Widget widAutoReportPrintChosenReadNameTrue_; Widget widAutoReportNumbersOfCharactersOfChosenReadNameToBePrinted_; Widget widAutoReportPrefix_; Widget widAutoReportUseOldCriteriaForDeletingColumnsOfPadsRadioBox_; Widget widAutoReportUseOldCriteriaForDeletingColumnsOfPadsTrue_; Widget widAutoReportDeleteColumnsOfPadsBeforeAdjustingReadQualityValuesRadioBox_; Widget widAutoReportDeleteColumnsOfPadsBeforeAdjustingReadQualityValuesTrue_; Widget widAutoReportFlankingBasesMustBeSingleSignalRadioBox_; Widget widAutoReportFlankingBasesMustBeSingleSignalTrue_; Widget widAutoReportMinimumQualityOfFlankingBases_; Widget widAutoReportFlankingBasesMustBeInHighQualitySegmentRadioBox_; Widget widAutoReportFlankingBasesMustBeInHighQualitySegmentTrue_; Widget widAutoReportSpecies_; // guiEditResources.h.part3 public: guiEditResources( const bool bStandAlone ) : bAllTheWayUp_( false ), nIndexOfLastFoundResource_( -666 ), bStandAlone_( bStandAlone ) {} ~guiEditResources(); void createWindow(); void windowCameUp(); void createResourceArray(); void userPushedFindButton( const bool bFindFirstNotFindNext ); // guiEditResources.h.part4 void checkPrintPS(); void checkDefaultTagType(); void checkDefaultTagOnConsensusNotReads(); void checkAutoFinishMinNumberOfErrorsFixedByAnExp(); void checkAutoFinishRedundancy(); void checkAutoFinishAverageInsertSize(); void checkPrimersMaxInsertSizeOfASubclone(); void checkPrimersMaxMeltingTemp(); void checkPrimersMaxMeltingTempForPCR(); void checkPrimersPickTemplatesForPrimers(); void checkPrimersSubcloneFullPathnameOfFileOfSequencesForScreening(); void checkPrimersCloneFullPathnameOfFileOfSequencesForScreening(); void checkPrimersMinMeltingTemp(); void checkPrimersMinMeltingTempForPCR(); void checkSearchFunctionsUseUnalignedEndsOfReads(); void checkSearchFunctionsUseLowQualityEndsOfReads(); void checkInexactSearchForStringMaxPerCentMismatch(); void checkOnlyAllowOneReadWriteConsedAtATime(); void checkAutoFinishAllowHighQualityDiscrepanciesInTemplateIfConsistentForwardReversePair(); void checkPrintWindowCommand(); void checkFileOfTagTypes(); void checkAssemblyViewShowConsistentFwdRevPairs(); void checkAssemblyViewShowConsistentFwdRevPairDepth(); void checkAssemblyViewShowConsistentFwdRevPairsBetweenDifferentScaffolds(); void checkAssemblyViewShowLegsOnSquaresForConsistentFwdRevPairs(); void checkAssemblyViewShowGapSpanningFwdRevPairs(); void checkAssemblyViewShowWhichInconsistentFwdRevPairs(); void checkAssemblyViewShowReadDepth(); void checkAssemblyViewShowMultipleHighQualityDiscrepancies(); void checkAssemblyViewShowRestrictionDigestCutSites(); void checkAssemblyViewFilterSequenceMatchesBySize(); void checkAssemblyViewSequenceMatchesMinSize(); void checkAssemblyViewSequenceMatchesMaxSize(); void checkAssemblyViewAutomaticallyStartWithConsed(); void checkAssemblyViewDisplayTheseTagTypesOnTheseLines(); void checkAssemblyViewShowTags(); void checkAutoEditRecalculateHighQualitySegmentsOfReads(); void checkAutoEditConvertCloneEndBasesToXs(); void checkAutoEditTellPhrapNotToOverlapMultiplyDiscrepantReads(); void checkAutoEditTagEditableLowConsensusQualityRegions(); void checkAutoEditMakeFakeRead(); void checkAutoEditMakeFakeReadFromRead1(); void checkAutoEditMakeFakeReadFromRead2(); void checkAutoEditMakeFakeReadName(); void checkAutoEditMakeFakeReadFastaFilename(); void checkAutoEditMergeAssembly(); void checkAutoEditSecondaryAceFile(); void checkAutoEditFixRunsInConsensus(); void checkShowAllTracesJustShowGoodTraces(); void checkAddAlignedSequenceQualityOfBases(); void checkMakeLightBackgroundInAlignedReadsWindowAndTracesWindow(); void checkPutVerticalLineAtCursor(); void checkPutHorizontalLineAtCursor(); void checkHighlightedReadsFile(); void checkAutoReportPrintReadNamesInRegion(); void checkAutoReportPrintReadNamesInRegionContig(); void checkAutoReportPrintReadNamesInRegionLeftPos(); void checkAutoReportPrintReadNamesInRegionRightPos(); void checkAutoReportPrintHighlyDiscrepantRegions(); void checkAutoReportPrintScaffolds(); void checkNumberUnpaddedConsensusAtUserDefined(); void checkAutoReportPrintHighQualityDiscrepancies(); void checkAutoReportHighQualityDiscrepanciesExcludeCompressionOrG_dropoutTags(); void checkAutoReportHighQualityDiscrepanciesExcludeMostPads(); void checkAutoReportPrintLowConsensusQualityRegions(); void checkAutoReportPrintSingleSubcloneRegions(); void checkAutoReportPrintSingleStrandedRegions(); void checkAutoReportPrintLinkingForwardReversePairs(); void checkAutoReportPrintFilteredInconsistentForwardReversePairs(); void checkAutoReportPrintAssemblySummary(); void checkShowAllTracesDoNotShowTraceIfTheseTagsPresent(); void checkNameOfFakeJoiningReadsIncludesAceFileName(); void checkWhenUserScrollsOffWindowMillisecondsBetweenScrolling(); void checkWhenUserScrollsOffWindowBasesToScrollEachTime(); void checkCompareContigsUseBandedRatherThanFullSmithWaterman(); void checkCompareContigsBandSize(); void checkAssemblyViewShowFwdRevPairDepthsInRedIfOnlyThisMany(); void checkAssemblyViewShowSequenceMatches(); void checkAssemblyViewOKToShowSequenceMatchesBetweenContigs(); void checkAssemblyViewOKToShowSequenceMatchesWithinContigs(); void checkAssemblyViewOKToShowDirectSequenceMatches(); void checkAssemblyViewOKToShowInvertedSequenceMatches(); void checkAssemblyViewOnlyShowSequenceMatchesToAParticularRegion(); void checkAssemblyViewOnlyShowSequenceMatchesToThisContig(); void checkAssemblyViewOnlyShowSequenceMatchesToThisRegionLeft(); void checkAssemblyViewOnlyShowSequenceMatchesToThisRegionRight(); void checkAssemblyViewOnlyShowSequenceMatchesToEndsOfContigs(); void checkAssemblyViewOnlyShowSequenceMatchesToEndsOfContigsThisFar(); void checkDefaultReadPrefix(); void checkReadPrefixesFile(); void checkMaxCharsDisplayedForReadPrefix(); void checkAutoFinishDoNotDoPCRIfThisManyAvailableGapSpanningTemplates(); void checkAutoFinishDoNotDoUnorientedPCRIfThisManyOrMoreUnorientedPCRReactions(); void checkAutoFinishDoNotDoOrientedPCRIfGapSizeLargerThanThis(); void checkAutoFinishDoNotDoPCRIfEndIsExtendedByReads(); void checkAutoFinishMaxAcceptableErrorsPerMegabase(); void checkAutoFinishIfNotEnoughFwdRevPairsUseThisPerCentOfInsertSize(); void checkPrimersNumberOfBasesToBackUpToStartLooking(); void checkPrimersMakePCRPrimersThisManyBasesBackFromEndOfHighQualitySegment(); void checkPrimersOKToChoosePrimersInSingleSubcloneRegion(); void checkPrimersOKToChoosePrimersWhereHighQualityDiscrepancies(); void checkPrimersOKToChoosePrimersWhereUnalignedHighQualityRegion(); void checkAutoFinishCallReversesToFlankGaps(); void checkAutoFinishAllowWholeCloneReads(); void checkAutoFinishAllowCustomPrimerSubcloneReads(); void checkAutoFinishAllowResequencingReads(); void checkAutoFinishAllowResequencingReadsOnlyForRunsAndStops(); void checkAutoFinishAllowDeNovoUniversalPrimerSubcloneReads(); void checkAutoFinishAllowMinilibraries(); void checkAutoFinishAllowPCR(); void checkAutoFinishAllowUnorientedPCRReactions(); void checkAutoFinishAllowResequencingAUniversalPrimerAutofinishRead(); void checkAutoFinishAlwaysCloseGapsUsingMinilibraries(); void checkAutoFinishMaximumFinishingReadLength(); void checkAutoFinishSuggestMinilibraryIfGapThisManyBasesOrLarger(); void checkAutoFinishSuggestSpecialChemistryForRunsAndStops(); void checkAutoFinishSuggestThisManyMinilibrariesPerGap(); void checkPrimersWindowSizeInLooking(); void checkPrimersAssumeTemplatesAreDoubleStrandedUnlessSpecified(); void checkAlignedReadsWindowInitialCharsWide(); void checkAlignedReadsWindowInitialCharsHigh(); void checkAlignedReadsWindowMaxCharsForReadNames(); void checkAlignedReadsWindowAutomaticallyExpandRoomForReadNames(); void checkAutoFinishAllowResequencingReadsToExtendContigs(); void checkAutoFinishCallHowManyReversesToFlankGaps(); void checkAutoFinishCloseGaps(); void checkAutoFinishContinueEvenThoughReadInfoDoesNotMakeSense(); void checkAutoFinishCostOfResequencingUniversalPrimerSubcloneReaction(); void checkAutoFinishCostOfCustomPrimerSubcloneReaction(); void checkAutoFinishCostOfCustomPrimerCloneReaction(); void checkAutoFinishCostOfDeNovoUniversalPrimerSubcloneReaction(); void checkAutoFinishCostOfMinilibrary(); void checkAutoFinishCoverSingleSubcloneRegions(); void checkAutoFinishCoverLowConsensusQualityRegions(); void checkAutoFinishDebugUniversalPrimerReadsFile(); void checkAutoFinishDebugCustomPrimerReadsFile(); void checkAutoFinishDoNotAllowSubcloneCustomPrimerReadsCloserThanThisManyBases(); void checkAutoFinishDoNotAllowWholeCloneCustomPrimerReadsCloserThanThisManyBases(); void checkAutoFinishDoNotFinishWhereTheseTagsAre(); void checkAutoFinishDoNotExtendContigsWhereTheseTagsAre(); void checkAutoFinishDoNotExtendContigsIfTagsAreThisCloseToContigEnd(); void checkDumpContigOrderAndOrientationInfoToThisFile(); void checkAutoFinishDumpTemplates(); void checkAutoFinishExcludeContigIfOnlyThisManyReadsOrLess(); void checkAutoFinishExcludeContigIfDepthOfCoverageGreaterThanThis(); void checkAutoFinishExcludeContigIfThisManyBasesOrLess(); void checkAutoFinishHowManyTemplatesYouIntendToUseForCustomPrimerSubcloneReactions(); void checkPrimersMinNumberOfTemplatesForPrimers(); void checkAutoFinishMinBaseOverlapBetweenAReadAndHighQualitySegmentOfConsensus(); void checkAutoFinishNumberOfVectorBasesAtBeginningOfAUniveralPrimerRead(); void checkAutoFinishCDNANotGenomic(); void checkAutoFinishConfidenceThatReadWillCoverSingleSubcloneRegion(); void checkAutoFinishPrintForwardOrReverseStrandWhenPrintingSubcloneTemplatesForCustomPrimerReads(); void checkAutoFinishPrintMinilibrariesSummaryFile(); void checkAutoFinishNearGapsSuggestEachMissingReadOfReadPairs(); void checkAutoFinishDoNotIgnoreLCQIfThisManyBasesFromEndOfContigForLCQTagger(); void checkCheckIfTooManyWalks(); void checkNumberOfColumnsBeforeReadNameInAlignedReadsWindow(); void checkCompareContigsAlignsThisManyBasesMax(); void checkCompressedChromatExtension(); void checkDimLowQualityEndsOfReads(); void checkDimUnalignedEndsOfReads(); void checkFakeReadsSpecifiedByFilenameExtension(); void checkFullPathnameOfAddReads2ConsedScript(); void checkFullPathnameOfFixContigEndScript(); void checkFixContigEndsCleanUpTemporaryFiles(); void checkFixContigEndsMinSmithWatermanScoreToMakeJoin(); void checkFixContigEndsMinNumberOfReadsInContig(); void checkFullPathnameOfCrossMatch(); void checkFullPathnameOfPhred(); void checkFullPathnameOfMiniassemblyScript(); void checkGunzipFullPath(); void checkFullPathnameOfFilter454ReadsScript(); void checkFilter454ReadsAgainstThis(); void check454LinkerSequences(); void checkHideSomeTagTypesAtStartup(); void checkMaximumNumberOfTracesShown(); void checkNavigateAutomaticTracePopup(); void checkNavigateAutomaticAllTracesPopup(); void checkPrimersMinimumLengthOfAPrimer(); void checkPrimersMaximumLengthOfAPrimer(); void checkPrimersMinimumLengthOfAPrimerForPCR(); void checkPrimersMaximumLengthOfAPrimerForPCR(); void checkPrimersMaxMeltingTempDifferenceForPCR(); void checkPrimersMaxPCRPrimerPairsToDisplay(); void checkPrimersCheckJustSomePCRPrimerPairsRatherThanAll(); void checkPrimersNumberOfTemplatesToDisplayInFront(); void checkPrimersMaxLengthOfMononucleotideRepeat(); void checkPrimersBadLibrariesFile(); void checkPrimersLibrariesInfoFile(); void checkPrimersBadTemplatesFile(); void checkPrimersChooseTemplatesByPositionInsteadOfQuality(); void checkPrimersWhenChoosingATemplateMinPotentialReadLength(); void checkPrimersWindowSizeInLookingForPCR(); void checkQualityThresholdForFindingHighQualityDiscrepancies(); void checkQualityThresholdForNavigateByDepthOfCoverage(); void checkNavigateByHighDepthOfCoverageNotLow(); void checkMinDepthForNavigateByDepthOfCoverage(); void checkDefaultVectorPathnameForRestrictionFragments(); void checkFileOfAdditionalRestrictionEnzymes(); void checkCommonRestrictionEnzymes(); void checkDefaultSelectedRestrictionEnzymes(); void checkRestrictionEnzymesActualFragmentsFile(); void checkRestrictionDigestInitialWindowSizeInTextRows(); void checkRestrictionDigestDoNoShowAreaOfFragmentsOverThisSize(); void checkShowReadsAlphabetically(); void checkShowReadsInAlignedReadsWindowOrderedByFile(); void checkShowReadsInAlignedReadsWindowOrderedByThisFile(); void checkShowReadsAtCursorSortedHow(); void checkShowABIBasesInTraceWindow(); void checkTracesWindowInitialPixelHeight(); void checkAssemblyViewWindowInitialPixelHeight(); void checkAssemblyViewFileOfTemplatesToNotShow(); void checkAssemblyViewCrossMatchMinmatch(); void checkAssemblyViewCrossMatchMinscore(); void checkAssemblyViewFindSequenceMatchesForConsedScript(); void checkAssemblyViewCrossmatchMinmatch(); void checkAssemblyViewCrossmatchMinscore(); void checkAssemblyViewSequenceMatchesMinimumSimilarity(); void checkTracesWindowInitialPixelWidth(); void checkAssemblyViewWindowInitialPixelWidth(); void checkAutomaticallyScaleTraces(); void checkAutomaticallyScaleTracesSamplePeakHeightFractionOfWindowHeight(); void checkAutomaticallyScaleTracesSamplePeakPercentile(); void checkVerticalTraceMagnification(); void checkUserDefinedKeys(); void checkProgramsForUserDefinedKeys(); void checkArgumentsToPassToUserDefinedPrograms(); void checkTagsToApplyWithUserDefinedKeys(); void checkSnpGenomeUseInsertionPolymorphisms(); void checkListOfTagTypesToHide(); void checkListOfOptionalWordsToSaveInListOfReadNames(); void checkExtendConsensusWithHighQuality(); void checkFastStartup(); void checkFastStartupFile(); void checkAlwaysRunProgramToGetChromats(); void checkProgramToRunToGetChromats(); void checkProgramToRunToGetChromatsOf454Reads(); void checkCreateFakeChromatsForSolexaReads(); void checkAutoFinishUseLongModelReadRatherThanShort(); void checkAskAgainIfWantToQuitConsedIfThisManyReads(); void checkPrintWindowInstructions(); void checkAllowMultipleSearchForStringWindows(); void checkAutoPCRAmplifyFalseProductsOKIfLargerThanThis(); void checkAutoPCRAmplifyMakePrimerOutOfFirstRegion(); void checkAutoPCRAmplifyMaybeRejectPrimerIfThisCloseToDesiredProduct(); void checkAddNewReadsRecalculateConsensusQuality(); void checkAddNewReadsPutReadIntoItsOwnContig(); void checkAddNewReadsCheckThatCrossMatchRunCorrectly(); void checkAssemblyViewNumberOfRowsOfTags(); void checkWarnUserWhenTryingToEditAllReads(); void checkMaybeXKEYSYMDBPath(); void checkMaybeXKEYSYMDBPath2(); void checkAmountToMoveWithBigLeftAndRightArrows(); void checkNavigateByHighlyDiscrepantPositionsMinDiscrepantReads(); void checkNavigateByHighlyDiscrepantPositionsMaxDepthOfCoverage(); void checkNavigateByHighlyDiscrepantPositionsIgnoreBasesBelowThisQuality(); void checkNavigateByHighlyDiscrepantPositionsJustListIndels(); void checkNavigateByHighlyDiscrepantPositionsIgnoreOtherReadsStartingAtSameLocation(); void checkNavigateByHighlyDiscrepantPositionsIgnoreIfListedBasesInConsensus(); void checkNavigateByHighlyDiscrepantPositionsIgnoreIfTheseBasesInConsensus(); void checkPhdBallDirectory(); void checkNewAceFileFOF(); void checkNavigateByHighOrLowDepthCoalesceRegionsIfThisClose(); void checkRemoveReadsDeleteNotJustPutInOwnContig(); void checkPaired454LeftReadExtension(); void checkPaired454RightReadExtension(); void checkSnpGenome1MSnps(); void checkDiffChromosomesExcludeDeletions(); void checkSnpGenomeFilterByWeight(); void checkWantReadsUpToThisFarFromSnps(); void checkPhaster2PhdBallSaveWhichMate(); void checkPhaster2PhdBallSaveInPhasterFormat(); void checkPhaster2PhdBallCalculateNewLocationsFile(); void checkPhdBall2FastaIgnoreLowQualityReads(); void checkPhdBall2FastaLowestAverageQuality(); void checkNextPhredPipelineControlFile(); void checkNextPhredPipelineTiffPerlScript(); void checkNextPhredPipelinePhasterPerlScript(); void checkNextPhredPipelineVersion(); void checkNextPhredPipelineMainDirectory(); void checkMaxNumberOfReadsPerPhdBall(); void checkUserWantsToSaveToThisAceFile(); void checkAutoFinishEmulate9_66Behavior(); void checkPrimersPCRPrimersGroupedIntoWindowOfThisManyBases(); void checkPrimersLookForThisManyPCRPrimerPairsPerPairOfGroups(); void checkAutoFinishStandardDeviationsFromMeanFromGapToLookForTemplatesForSuggestingEachMissingReadOfReadPairs(); void checkAutoFinishCheckThatReadsFromTheSameTemplateAreConsistent(); void checkAutoFinishDoNotAllowSubcloneCustomPrimerReadsCloseTogether(); void checkAutoFinishDoNotAllowWholeCloneCustomPrimerReadsCloseTogether(); void checkAutoFinishMinilibrariesPreferTemplateIfSizeThisManyStdDevsFromMean(); void checkAutoFinishMinNumberOfForwardReversePairsInLibraryToCalculateAverageInsertSize(); void checkAutoFinishIfEnoughFwdRevPairsUseThisManyStdDevBelowMeanForInsertSize(); void checkAutoFinishNewCustomPrimerReadThisFarFromOldCustomPrimerRead(); void checkAutoFinishMinNumberOfSingleSubcloneBasesFixedByAnExp(); void checkAutoFinishNumberOfBasesBetweenContigsAssumed(); void checkAutoFinishPotentialHighQualityPartOfReadStart(); void checkAutoFinishPotentialHighQualityPartOfReadEnd(); void checkAutoFinishPrintCustomNavigationFileForChosenReads(); void checkAutoFinishReversesForFlankingGapsTemplateMustProtrudeFromContigThisMuch(); void checkAutoFinishTagOligosWhenDoExperiments(); void checkCountPads(); void checkDebugging(); void checkDebugging2(); void checkDebugging3(); void checkDebuggingString(); void checkIgnoreHighQualityDiscrepanciesThisManyBasesFromEndOfAlignedRegion(); void checkIgnoreUnalignedHighQualitySegmentsShorterThanThis(); void checkPrimersLookThisFarForForwardVectorInsertJunction(); void checkPrimersDNAConcentrationNanomolar(); void checkPrimersMaxMatchElsewhereScore(); void checkPrimersMaxMatchElsewhereScoreForPCR(); void checkPrimersMaxSelfMatchScore(); void checkPrimersMaxPrimerDimerScoreForPCR(); void checkPrimersMinQuality(); void checkPrimersPrintInfoOnRejectedTemplates(); void checkPrimersSaltConcentrationMillimolar(); void checkPrimersScreenForVector(); void checkPrimersToleranceForDifferentBeginningLocationOfUniversalPrimerReads(); void checkPrimersTooManyVectorBasesInWalkingRead(); void checkQualityThresholdForLowConsensusQuality(); void checkTagColorPerCentOfBase(); void checkUncompressedChromatDirectory(); void check454sff2scfDirectory(); void checkWhenMakingFakeReadToJoinContigsAddThisManyBasesOnEitherSideOfAlignedRegion(); void checkWriteThisAceFormat(); void checkDumpCoreIfBoundsError(); void checkAutoFinishMinSmithWatermanScoreOfARun(); void checkAutoFinishDoNotComparePCRPrimersMoreThanThisManyTimes(); void checkRestrictionDigestMaximumBasesToCompareToVector(); void checkRestrictionDigestZoomFactor(); void checkRestrictionDigestZoomFactorForNavigate(); void checkRestrictionDigestToleranceInPositionUnits(); void checkAutoPCRAmplifyTooManySeriousFalseMatches(); void checkAssemblyViewZoomFactor(); void checkAssemblyViewFilterInconsistentFwdRevPairsIfThisClose(); void checkAssemblyViewGridCellWidthInPixels(); void checkAssemblyViewCursorSensitivityInPixels(); void checkAssemblyViewReadDepthQuality(); void checkShowAllTracesMaxNumberOfTracesToShowAtOnce(); void checkAllowFwdRevPairScaffoldsToBeMergedIfThisManyBasesIntersectionOrLess(); void checkJustForPrimateProject(); void checkSolexaFilesAreAssumedToBeHere(); void checkSolexaAlignmentFilesPerInsertingPadsCycle(); void checkSolexaAlignmentsPerAlignmentFile(); void checkSolexaFastqFilesArePhredQualityNotSolexaQuality(); void checkSolexa64FastqOrSanger33Fastq(); void checkMaximumReadsInReadList(); void checkMaxLengthOfReadsInapLocatedFragment2(); void checkMaximumStartupErrorsToReport(); void check454LinkerAlignmentMatchScore(); void check454LinkerAlignmentMismatchScore(); void check454LinkerAlignmentIndelScore(); void checkFilter454ReadsDeleteCrossMatchOutput(); void checkAutoReportAllNeededSpeciesCode(); void checkAutoReportUseCommasInBigNumbers(); void checkAutoReportPrintToCompareToReich(); void checkAutoReportOnlyAllowSitesThatAreBetweenAcceptableSites(); void checkAutoReportDeaminationMutationsDeterminedByMoreAccurateMethod(); void checkAutoReportChooseTreesUsingBadData(); void checkAutoReportChooseTreesByCountingDeaminationMutations(); void checkAutoReportChooseTreesUsingKimura(); void checkAutoReportPrintCrudeChimpHumanMutations(); void checkAutoReportPrintPositionsForGraham(); void checkAutoReportPrintAncestralCpGs(); void checkAutoReportPrintCpGMutations(); void checkAutoReportPrintMutationsWithContext(); void checkAutoReportCountAllMutationsML(); void checkAutoReportCountAllMutations(); void checkAutoReportIgnoreMultipleTrees(); void checkAutoReportCountAcceptableColumnsWithNoneOnLeft(); void checkAutoReportPrintFlankedColumns4(); void checkAutoReportUseAnnotationFormat(); void checkAutoReportPrintFlankedColumns3(); void checkAutoReportPrintFlankedColumns2(); void checkAutoReportPrintFlankedColumns(); void checkAutoReportHighQualitySegmentData(); void checkAutoReportGoodReadsBug(); void checkAutoReportDiscrepancyRateInFlankedRegions(); void checkAutoReportDiscrepancyRateInFlankedRegions2(); void checkAutoReportDiscrepancyRateInFlankedRegions4(); void checkAutoReportDiscrepancyRateInFlankedRegions5(); void checkAutoReportSingleSignalOrQuality(); void checkAutoReportLowQualityBasesInHQS(); void checkAutoReportCompareHQSWithLQS(); void checkAutoReportCountColumnsForGroupsOfSpecies(); void checkAutoReportSingleSignalInfo(); void checkAutoReportSingleSignalInfo2(); void checkAutoReportCompareTopAndBottomStrands(); void checkAutoReportCompareTopAndBottomStrandsNoHuman(); void checkAutoReportCompareTopAndBottomStrands2(); void checkAutoReportCompareTopAndBottomStrands3(); void checkAutoReportCompareTopAndBottomStrands4(); void checkAutoReportTopStrandPinnedPosition(); void checkAutoReportBottomStrandPinnedPosition(); void checkAutoReportCompareTopAndBottomStrandsWithHuman(); void checkAutoReportPrintLengthsOfAlignedSegmentsOfReads(); void checkAutoReportPrintLengthsOfUnalignedHighQualitySegmentsOfReads(); void checkAutoReportPrintIfReadsAreCorrectlyAligned(); void checkAutoReportCalculateErrorProbabilitiesByComparingPTroPPan(); void checkAutoReportPrintAgreeDisagreeBetweenPairsOfSpecies(); void checkAutoReportPrintAgreeDisagreeBetweenPairsOfSpecies2(); void checkAutoReportFilterSingleSignal(); void checkAutoReportGoodHitReads(); void checkAutoReportQualityWindowLow(); void checkAutoReportQualityWindowHigh(); void checkAutoReportPrintNumberOfIsolatedPadsForEachSpecies(); void checkAutoReportPrintNumberOfIsolatedPads(); void checkAutoReportIsolatedPadsOfReadsWithThisPattern(); void checkAutoReportMinNumberOfPerfectlyAlignedBasesBeforeDiscrepancy(); void checkAutoReportMaxSizeOfDiscrepantRegion(); void checkAutoReportSizeOfDiscrepantRegion(); void checkAutoReportPrintMinimumQualityHistogram(); void checkAutoReportPrintDiscrepantRegions(); void checkAutoReportPrintBasesInDiscrepantRegions(); void checkAutoReportPrintDiscrepantRegionsButIgnoreReadsContainingThis(); void checkAutoReportBackboneReadHasThisStringInIt(); void checkAutoReportPrintDiscrepantRegionsButOnlyIfAboveQualityThreshold(); void checkAutoReportPrintSpeciesAlignment(); void checkAutoReportPrintReadAlignment(); void checkAutoReportPrintTheseReads(); void checkAutoReportPrintReadPositions(); void checkAutoReportPrintChosenReadName(); void checkAutoReportNumbersOfCharactersOfChosenReadNameToBePrinted(); void checkAutoReportPrefix(); void checkAutoReportUseOldCriteriaForDeletingColumnsOfPads(); void checkAutoReportDeleteColumnsOfPadsBeforeAdjustingReadQualityValues(); void checkAutoReportFlankingBasesMustBeSingleSignal(); void checkAutoReportMinimumQualityOfFlankingBases(); void checkAutoReportFlankingBasesMustBeInHighQualitySegment(); void checkAutoReportSpecies(); void getColors( const double d1, const double d2, Pixel& pixForeground, Pixel& pixBackground ) { if ( d1 == d2 ) { pixForeground = pixValueUnchangedForegroundColor_; pixBackground = pixValueUnchangedBackgroundColor_; } else { pixForeground = pixValueChangedForegroundColor_; pixBackground = pixValueChangedBackgroundColor_; } } void getColors( const int n1, const int n2, Pixel& pixForeground, Pixel& pixBackground ) { if ( n1 == n2 ) { pixForeground = pixValueUnchangedForegroundColor_; pixBackground = pixValueUnchangedBackgroundColor_; } else { pixForeground = pixValueChangedForegroundColor_; pixBackground = pixValueChangedBackgroundColor_; } } void getColors( const RWCString& so1, const RWCString& so2, Pixel& pixForeground, Pixel& pixBackground ) { if ( so1 == so2 ) { pixForeground = pixValueUnchangedForegroundColor_; pixBackground = pixValueUnchangedBackgroundColor_; } else { pixForeground = pixValueChangedForegroundColor_; pixBackground = pixValueChangedBackgroundColor_; } } void getColors( const bool b1, const bool b2, Pixel& pixForeground, Pixel& pixBackground ) { if ( b1 == b2 ) { pixForeground = pixValueUnchangedForegroundColor_; pixBackground = pixValueUnchangedBackgroundColor_; } else { pixForeground = pixValueChangedForegroundColor_; pixBackground = pixValueChangedBackgroundColor_; } } void userPushedSave(); void userChoseFileAndPushedOK( const Widget widFileSelectionDialog, XmFileSelectionBoxCallbackStruct* pCallbackStruct ); void checkEverything(); void userResizedWindow(); void userPushedHelp( const RWCString& soResourceName ); }; #endif