/*****************************************************************************
#   Copyright (C) 1994-2008 by David Gordon.
#   All rights reserved.                           
#                                                                           
#   This software is part of a beta-test version of the Consed/Autofinish
#   package.  It should not be redistributed or
#   used for any commercial purpose, including commercially funded
#   sequencing, without written permission from the author and the
#   University of Washington.
#   
#   This software is provided ``AS IS'' and any express or implied
#   warranties, including, but not limited to, the implied warranties of
#   merchantability and fitness for a particular purpose, are disclaimed.
#   In no event shall the authors or the University of Washington be
#   liable for any direct, indirect, incidental, special, exemplary, or
#   consequential damages (including, but not limited to, procurement of
#   substitute goods or services; loss of use, data, or profits; or
#   business interruption) however caused and on any theory of liability,
#   whether in contract, strict liability, or tort (including negligence
#   or otherwise) arising in any way out of the use of this software, even
#   if advised of the possibility of such damage.
#
#   Building Consed from source is error prone and not simple which is
#   why I provide executables.  Due to time limitations I cannot
#   provide any assistance in building Consed.  Even if you do not
#   modify the source, you may introduce errors due to using a
#   different version of the compiler, a different version of motif,
#   different versions of other libraries than I used, etc.  For this
#   reason, if you discover Consed bugs, I can only offer help with
#   those bugs if you first reproduce those bugs with an executable
#   provided by me--not an executable you have built.
# 
#   Modifying Consed is also difficult.  Although Consed is modular,
#   some modules are used by many other modules.  Thus making a change
#   in one place can have unforeseen effects on many other features.
#   It may takes months for you to notice these other side-effects
#   which may not seen connected at all.  It is not feasable for me to
#   provide help with modifying Consed sources because of the
#   potentially huge amount of time involved.
#
#*****************************************************************************/
#ifndef GUITOPWINDOW_INCLUDED
#define GUITOPWINDOW_INCLUDED



#include    <Xm/Xm.h>
#include    <Xm/PushB.h>
#include    "rwcstring.h"
#include    "sysdepend.h"

class ChooseContig;

class guiTopWindow {
 public:
   guiTopWindow();

   friend void searchForStringButtonCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);


   friend void quitConsedButtonCb(Widget wid,
                    guiTopWindow* pGuiMain,
                    XmPushButtonCallbackStruct* pCbStruct);

   friend void cbChooseContig( Widget widCallback, XtPointer client_data, 
                    XtPointer call_data );

   friend void cbChooseContigSingleClick( Widget widCallback, XtPointer client_data, 
                    XtPointer call_data );

   void setAssemblyName( const RWCString& soAssemblyName );

   void showListOfContigs( ChooseContig* pChooseContig );

   void guiChoseContig( Widget widCallback, 
                            XmListCallbackStruct* pXmListCallbackStruct );

   void setCallbackInfoForSingleSelection( Widget widCallback, 
                        XmListCallbackStruct* pXmListCallbackStruct );


   friend void generalPreferencesMenuItemCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);

   friend void cbSetPrimerPickingPreferences(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);

   friend void cbIncrementalSearchForRead( Widget wid, XtPointer client_data, 
                    XtPointer call_data );

   friend void cbUserPressedReturnInIncrementalSearchForRead( 
                    Widget wid, 
                    XtPointer client_data, 
                    XtPointer call_data );

   friend void cbCreateAssemblyView(
                    Widget wid,
                    XtPointer pClientData,
                    XtPointer pCallData );

   void    userPressedReturnInIncrementalSearchForRead();

   void    userPressedReturnInEnterContigName();

   void    userPressedReturnInReadWithAsterisks();

   void    incrementalSearchForReadValueChanged();

   void findFirstMatchingReadForUserTypedString( 
                           const RWCString& soUserTypedString,
                           int& nIndexInReadList );

   Widget widGetIncrementalSearchForRead() { 
      return( widIncrementalSearchForRead_ ); }


   void showConsedResources();

   void showAutoFinishErrorsFixedFormula();


   void editConsedResources();
   void createMiniassemblyWindow();

   void userPressedReorderContigs();

   void testExceptionHandling();

 public:
   Widget   widMainWin_;
   Widget   widMenuBar_;
   Widget   widForm_;
   Widget   widQuitButton_;
   Widget   widAssemblyName_;
   Widget   widSearchForStringButton_;
   Widget   widUndoEditButton_;
   Widget   widPrintButton_;
   Widget   widAssemblyViewButton_;
   Widget   widAddNewReadsButton_;
   Widget   widContigList_;
   Widget   widReadList_;
   Widget   widNumberOfReads_;
   Widget   widIncrementalSearchForRead_;
   Widget   widReadWithAsterisks_;
   Widget   widShowContigButton_;
   Widget   widCloseAllWindows_;
   Widget   widEnterContigName_;
   Widget   widReorderContigsButton_;

   bool     bUserSingleClicked_;
   bool     bSingleClickReadListNotContigList_;
   int      nSingleClickIndex_;
};

void openAssemblyMenuItemCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);

void saveAssemblyMenuItemCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);


void quitConsedMenuItemCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);

void cbUndoEditButton( Widget wid,
                       XtPointer pClientData,
                       XtPointer pCallData );


void cbCustomNavigation(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);


void showXResourcesMenuItemCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);


void showConsedVersionMenuItemCb(Widget w, 
                          XtPointer client_data,
                          XtPointer call_data);

void cbShowWholeAssemblyItems( Widget wid,
                               XtPointer pClientData,
                               XtPointer pCallData );


void generalPreferencesMenuItemCb(Widget w, 
                XtPointer client_data,
                XtPointer call_data);

void cbSetPrimerPickingPreferences(Widget w, 
                XtPointer client_data,
                XtPointer call_data);

void cbIncrementalSearchForRead( Widget wid, XtPointer client_data, 
          XtPointer call_data );

void cbUserPressedReturnInIncrementalSearchForRead( 
          Widget wid, 
          XtPointer client_data, 
          XtPointer call_data );

void cbCreateAssemblyView(
          Widget wid,
          XtPointer pClientData,
          XtPointer pCallData );


void searchForStringButtonCb(Widget w, 
                XtPointer client_data,
                XtPointer call_data);


void quitConsedButtonCb(Widget wid,
          guiTopWindow* pGuiMain,
          XmPushButtonCallbackStruct* pCbStruct);

void cbChooseContig( Widget widCallback, XtPointer client_data, 
          XtPointer call_data );

void cbChooseContigSingleClick( Widget widCallback, XtPointer client_data, 
                    XtPointer call_data );



#endif