T-COFFEE, Version_1.37(Wed Jul 11 14:38:06 PDT 2001)
Notredame, Higgins, Heringa, JMB(302)pp205-217,2000
CPU TIME:11 sec.
SCORE=30
*
 BAD AVG GOOD
*
AF112443_CDS1    :  27
AF128239_CDS1    :  29
BOAJ5280_CDS1    :  26
BOAJ5281_CDS1    :  26
CAGT_CDS1        :  38
CAGTHIOGN_CDS2   :  37
CAGTHIOGN_CDS1   :  38
GMU12150_CDS1    :  35
ZMA133530_CDS1   :  16

AF112443_CDS1    --MARSIYFMAFLVLAMTLFVAYGVQ-----GKEICCKE-----LTKPV-----
AF128239_CDS1    --MARSIYFMAFLVLAVTLFVANGVQ-----GQNNICKT-----TSKHF----K
BOAJ5280_CDS1    MKNTVKLSLIGFVMLTVLLLGETVIA-----QKRKPCYS-----QE------PD
BOAJ5281_CDS1    MKNTVKLSLIGFVMLTVLLLGETVIA-----QKRKPCYS-----QE------PD
CAGT_CDS1        MAGFSK--VVATIFLMMLLVFATDMM-----AEAKICEA-----LSGNF----K
CAGTHIOGN_CDS2   MAGFSK--VIATIFLMMMLVFATDMM-----AEAKICEA-----LSGNF----K
CAGTHIOGN_CDS1   MAGFSK--VIATIFLMMMLVFATGMV-----AEARTCES-----QSHRF----K
GMU12150_CDS1    MSRSVP--LVSTICVLLLLLVATEMMGPTMVAEARTCES-----QSHRF----K
ZMA133530_CDS1   -------MRIVYMAAVMCLVLATMSS-----TSPSFCQAGGCIGCPRAPPPPSD

Cons                      :  :   : *.            .   *                 


AF112443_CDS1    -KCSSDP-----LCQKLCM------------EKEKYEDGHCFTILSKCLCMKRC
AF128239_CDS1    GLCFADS-----KCRKVCI------------QEDKFEDGHCSKLQRKCLCTKNC
BOAJ5280_CDS1    KTCEVN------RCKANCVKKHKKILAFTSCIKENNGNMY-------CRCQYPC
BOAJ5281_CDS1    KTCEVN------RCKANCVKKHKKILAFTSCIKENNGNMY-------CRCQYPC
CAGT_CDS1        GLCLSSR-----DCGNVC-------------RREGFTDGSCIGFRLQCFCTKPC
CAGTHIOGN_CDS2   GLCLSSR-----DCGNVC-------------RREGFTSGVCRGFPLKCFCRKPG
CAGTHIOGN_CDS1   GLCFSKS-----NCGSVC-------------HTEGFNGGHCRGFRRRCFCTRHC
GMU12150_CDS1    GPCLSDT-----NCGSVC-------------RTERFTGGHCRGFRRRCFCTKHC
ZMA133530_CDS1   ETCYEDLKCSASRCHLGCIHRGYKG-----------TGSYCRG--RDCCCKH--

Cons               *  .       *   *                   .         * *    


AF112443_CDS1    NAKTLATELLA---------------------
AF128239_CDS1    VFDNIPNDVGTILVQDAKTLEAQLLEEEILGL
BOAJ5280_CDS1    PP------------------------------
BOAJ5281_CDS1    PP------------------------------
CAGT_CDS1        A-------------------------------
CAGTHIOGN_CDS2   A-------------------------------
CAGTHIOGN_CDS1   --------------------------------
GMU12150_CDS1    --------------------------------
ZMA133530_CDS1   --------------------------------

Cons