# # VTML200 # # This matrix was produced by scripts written by # Kai Kneutgen and Tobias Mueller [Mai-2002] # # VTML200 substitution matrix, Units = Third-Bits # # Expected Score = -1.038 Third-Bits # Lowest Score = -6.432 # Highest Score = 15.127 # Entropy H = 0.420 Bits # # # For further information on the VTML substitution model, see # # Estimating Amino Acid Substitution Models: # A Comparison of Dayhoff's Estimator, the Resolvent Approach and a Maximum Likelihood Method. # T. Mueller, R. Spang and M. Vingron # Mol Biol Evol 19(1): 8-13. 2002. # # or mail to # Tobias.Mueller@molgen.mpg.de # # The latest version of this perl script can be downloaded at # http://www.molgen.mpg.de/~muelle_t A R N D C Q E G H I L K M F P S T W Y V B Z X * A 4 -2 -1 -1 1 -1 -1 0 -2 -1 -2 -1 -1 -3 0 1 1 -4 -3 0 -1 -1 -1 -6 R -2 7 0 -2 -3 2 -1 -2 1 -3 -3 4 -2 -4 -1 -1 -1 -3 -2 -3 -1 0 -1 -6 N -1 0 6 3 -2 1 1 0 1 -4 -4 1 -3 -4 -2 1 0 -5 -2 -3 4 1 -1 -6 D -1 -2 3 6 -4 1 3 -1 0 -5 -5 0 -4 -6 -1 0 -1 -6 -4 -4 5 2 -2 -6 C 1 -3 -2 -4 12 -3 -4 -2 -2 0 -3 -4 -1 -3 -3 1 0 -6 0 1 -3 -4 -1 -6 Q -1 2 1 1 -3 5 2 -2 2 -3 -2 2 -1 -3 -1 0 0 -6 -3 -2 1 4 -1 -6 E -1 -1 1 3 -4 2 5 -1 0 -4 -4 1 -3 -5 -1 0 -1 -6 -3 -3 2 4 -1 -6 G 0 -2 0 -1 -2 -2 -1 8 -2 -6 -5 -2 -4 -5 -2 0 -2 -5 -5 -4 0 -2 -2 -6 H -2 1 1 0 -2 2 0 -2 8 -3 -2 0 -3 0 -2 0 -1 -1 3 -3 1 1 0 -6 I -1 -3 -4 -5 0 -3 -4 -6 -3 5 3 -3 2 0 -4 -3 -1 -2 -2 4 -4 -3 -1 -6 L -2 -3 -4 -5 -3 -2 -4 -5 -2 3 5 -3 3 2 -3 -3 -2 -1 -1 2 -5 -3 -1 -6 K -1 4 1 0 -4 2 1 -2 0 -3 -3 5 -2 -5 -1 0 0 -4 -3 -3 0 2 -1 -6 M -1 -2 -3 -4 -1 -1 -3 -4 -3 2 3 -2 6 1 -3 -2 -1 -3 -2 2 -3 -2 -1 -6 F -3 -4 -4 -6 -3 -3 -5 -5 0 0 2 -5 1 8 -4 -3 -3 3 5 -1 -5 -4 -1 -6 P 0 -1 -2 -1 -3 -1 -1 -2 -2 -4 -3 -1 -3 -4 9 0 -1 -4 -5 -3 -1 -1 -2 -6 S 1 -1 1 0 1 0 0 0 0 -3 -3 0 -2 -3 0 4 2 -4 -2 -2 1 0 -1 -6 T 1 -1 0 -1 0 0 -1 -2 -1 -1 -2 0 -1 -3 -1 2 4 -5 -3 0 0 -1 -1 -6 W -4 -3 -5 -6 -6 -6 -6 -5 -1 -2 -1 -4 -3 3 -4 -4 -5 15 4 -4 -5 -6 -2 -6 Y -3 -2 -2 -4 0 -3 -3 -5 3 -2 -1 -3 -2 5 -5 -2 -3 4 9 -2 -3 -3 -1 -6 V 0 -3 -3 -4 1 -2 -3 -4 -3 4 2 -3 2 -1 -3 -2 0 -4 -2 4 -3 -3 -1 -6 B -1 -1 4 5 -3 1 2 0 1 -4 -5 0 -3 -5 -1 1 0 -5 -3 -3 4 1 -1 -6 Z -1 0 1 2 -4 4 4 -2 1 -3 -3 2 -2 -4 -1 0 -1 -6 -3 -3 1 4 -1 -6 X -1 -1 -1 -2 -1 -1 -1 -2 0 -1 -1 -1 -1 -1 -2 -1 -1 -2 -1 -1 -1 -1 -1 -6 * -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 1