LOCUS NZ_ABVG02000017 4470 bp DNA linear CON 10-NOV-2010 DEFINITION Clostridium thermocellum JW20 ctg267, whole genome shotgun sequence. ACCESSION NZ_ABVG02000017 NZ_ABVG00000000 VERSION NZ_ABVG02000017.1 GI:281419637 KEYWORDS WGS. SOURCE Clostridium thermocellum JW20 ORGANISM Clostridium thermocellum JW20 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from ABVG02000017. FEATURES Location/Qualifiers source 1..4470 /organism="Clostridium thermocellum JW20" /mol_type="genomic DNA" /strain="JW20" /isolation_source="cotton bale" /db_xref="taxon:492476" /country="USA: Louisiana" mobile_element 1..479 /mobile_element_type="insertion sequence:IS120 element like" gene <1..243 /locus_tag="Cther_0012" CDS <1..243 /locus_tag="Cther_0012" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: cce:Ccel_2702 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="Integrase catalytic region" /protein_id="ZP_06250642.1" /db_xref="GI:281419638" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR012337" /translation="IKISMDGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQIT KEYVEHYNHRRPHQSLDYKTPAEYYFGGYDQLLAVV" misc_feature <1..201 /locus_tag="Cther_0012" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" gene 924..1118 /locus_tag="Cther_0013" CDS 924..1118 /locus_tag="Cther_0013" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250643.1" /db_xref="GI:281419639" /translation="MIGYSVSEISTNDLQYFYNNIKRFLMFEAQKEKIGNVTHFVMRK INQVVKKKTRISHFKNNWEL" gene 1164..1640 /locus_tag="Cther_0014" CDS 1164..1640 /locus_tag="Cther_0014" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250644.1" /db_xref="GI:281419640" /translation="MPKLNNIEGNILLEINLLNNDFLDVDEERQDSENWIPFEFVLNV PREKYVYTPDMGATFSVYEIKSLIEKFEQIAENKLSKKSFEKFEFSSSESYFDIIVDD PLEDGEIYMEIWLNIGTITDGELSGYDKGFRFVVKLDTFIEFTSELKRQYKRMMEL" gene 2075..2240 /locus_tag="Cther_0015" /pseudo gene 2251..3027 /locus_tag="Cther_0016" /pseudo gene 3040..3525 /locus_tag="Cther_0017" CDS 3040..3525 /locus_tag="Cther_0017" /inference="similar to AA sequence:KEGG:GTNG_0427" /note="KEGG: gtn:GTNG_0427 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250645.1" /db_xref="GI:281419641" /translation="MKYYKLLYDYEHEDNSIFLEIDEKTLSFDRYEAEKGIEFCDWNV DIKVNYDNGNKRVITDYVPNDLSWFIVTDKLKSIIESMKNNKVQYLPIRARSKDESEV LDLYLVNICNIVDALDLENSKYSVHEIDENEKMISVQKYAIKGSVIKDIDLFRLKDHY I" mobile_element complement(3521..4470) /mobile_element_type="insertion sequence:IS120 element like" gene complement(3757..>4470) /locus_tag="Cther_0018" /pseudo ORIGIN 1 atcaaaatat ctatggatgg aaaaggaaga gcattagaca accaaaggat agaacgattt 61 ttccgttcct acaagtggga gaaactttat cttgaagagt gcgaaacggt acaacaactt 121 agacaaatca caaaggaata tgtggagcac tataaccata ggagaccgca ccagtcattg 181 gattacaaaa caccggcaga gtattacttt ggaggatatg accagctact ggcagttgta 241 tagaattatg gggctccgcc ccaaaccccg tcctcaccgg aaggcagccg gtctgtcata 301 acagaccgga aagcaaaagg atatatgtcc aaaggatgtc aagggtcaag atgaactcgc 361 ttacgctcgc ccttgacatc ctccaacaga gtgcacagtt gtaaagatta tacaaaatta 421 agaaaggaga gctaacttag aaaagctaaa aaactgtctt gacaatgggg agcattatag 481 ctttagtgat gaaaaaataa atgatattaa gaataattat tcacaaaaag tctatcaatc 541 agggggtaga actgtatttg caaaaaagaa tggcaattat tatgatgtag ttatagttaa 601 taaggaaggt gttgtaataa cgacagtagg aggaaaaact aaatcattaa aaacttggaa 661 agatgtttta aaaatgttaa aaaacaatgg agagattagt tcactgccaa tagattaaga 721 aagagtattc ttgtactaaa atgaaataaa ctttgaaaaa aggatgccat attgtagaat 781 ttaagacgag agttgcatgg acagtgaata gattagagaa agcgaaagaa catttagtat 841 gaagtatact tagaataaag ggataatgta aatcatagaa agaactctga ttgttagagt 901 tgatataaaa agaggagtgt actttgattg ggtattcagt ttctgaaata tcgactaatg 961 atttacaata tttctataat aacataaaaa gatttttaat gtttgaagct caaaaggaga 1021 aaatagggaa cgtgacgcac tttgtaatga gaaaaattaa tcaagtagta aaaaagaaaa 1081 ctagaatttc tcattttaaa aataattggg agctataaaa gcagaaaaga aaaatatttc 1141 aagaataatt aagggggagt tatatgccta aattaaacaa tatagagggt aatattttgt 1201 tagaaattaa cttgcttaat aatgattttc ttgatgttga tgaggaaaga caagatagtg 1261 agaattggat tccatttgaa tttgtcttaa atgttccacg ggaaaaatat gtttatacgc 1321 ctgatatggg agcaactttt agtgtatatg agattaaaag tttgattgaa aaatttgagc 1381 aaatagcaga aaataaacta tctaaaaaaa gctttgagaa atttgaattt tcaagttctg 1441 aatcctattt tgacattata gtggatgacc cattggaaga tggagaaata tacatggaaa 1501 tttggttaaa tataggcaca attactgacg gtgaattaag tggttatgac aaagggttta 1561 ggtttgtggt aaaattagat acatttatcg aatttacaag tgaattaaaa aggcaatata 1621 aacgtatgat ggaactttga aaaagaagaa tctgtcgtgg gaaatttgaa atcatagtat 1681 aataatacta aaaaattaag actgacaaaa cagaaaagta agttaaacac aattgcatta 1741 ccaaattaat gaaaactggt aatagcatga tatatttaag ttataacggt gaagaagaca 1801 gtggtatttt tgttggtgca gcaagagttt gtaagctaga ctggcttggg cttcctgctt 1861 gtactataaa ctgttgactt tataataaaa ttatgatact tcttagggaa tataaataat 1921 tctgtggtgc ggttgggcaa gataatggag gagaacaggt ggaaatccgc atgagtagac 1981 cttaagcata tctgtctcac tttacctaca aaaagattga aaagtttctt tcttggcaag 2041 aattacaaat agtatccaag gaagagattt tcttatgtta acattatcaa aagaagaaat 2101 gaataacatg atcaagagaa ataatttcaa aagtattgta aatgtgacat acctaaaaga 2161 tatttttaga cattattcaa gaatttcttt aagctaaatt gaagtatcat accaattact 2221 gtttcaaaaa tcaacaaatt agtcgacgaa aaccggtaca aggtgtatga taacggcaag 2281 aaaatagatt tcaaatgctt tgttgcgggt acgatggtat tgacagcggc aggcttggtt 2341 gcgatagaga atatcaaggc aggagacaag gtaattgcga cgaatccgga gacttttgaa 2401 gtagcggaga agacggtgct tgagacatat gtgagagaga caacggagct tttacatttg 2461 acaattaatg gagaggaaat caagacgacc tttgagcatc cgttttatgt taaagatgtg 2521 ggttttgttg aagcgggaaa actgcaagta ggagataagt tggttgattc aagaggtagt 2581 gttttagtat tggaaggtaa aaagcttgaa ataacagata agcctgtaaa ggtttacaat 2641 tttaaggtcg ataattttca tacgtatcat gttggcgaaa atagggtatt ggttcataat 2701 gcgaataagt atgttaaggg aacgagtagt actgctaagc caacacagac tcatcacttc 2761 ctgacaaata agagtagtac atatacagca cagattgaaa aaataaccaa aaagtatgga 2821 ttagatcttg atggcagttg gaagaaagct gcagtgcaac accaagggag acatccaaat 2881 gcatatcatg attatatgct taatgaaatt aaacgcattg attctattgc gaaaggtgat 2941 actaacatat tcttgaaact ttttgaaagt gtaaagaatg aagtattaaa aaatccagat 3001 atgcttacaa aaagcttctg ggaataatag gaggttatca tgaaatatta taagttgcta 3061 tatgattatg aacatgaaga taattcgatt tttttagaaa ttgacgaaaa aaccctttca 3121 tttgataggt atgaagctga aaaaggaatc gaattctgtg attggaatgt tgatattaaa 3181 gtgaattatg ataatggtaa taagagagta attactgact atgttccaaa tgatttaagt 3241 tggtttattg ttactgataa attaaaaagt attattgaaa gcatgaaaaa taataaagtt 3301 cagtatttac ctataagggc aagaagtaaa gatgagtcag aagtattaga tttgtatttg 3361 gtcaatatat gcaatattgt tgatgcactt gatttagaaa attcgaaata tagtgttcat 3421 gaaattgatg aaaatgaaaa aatgatttct gttcaaaaat atgctataaa gggaagtgtg 3481 attaaagata tcgatttatt taggcttaaa gaccattata tataatgctc cccattgtca 3541 agacagtttt ttagcttttc taagttagct ctcctttctt aattttgtat aatctttaca 3601 actgtgcact ctgttggagg atgtcaaggg cgagcgtaag cgagttcatc ttgacccttg 3661 acatcctttg gacatatatc cttttgcttt ccggtctgtt atgacagacc ggctgccttc 3721 cggtgaggac ggggtttggg gcggagcccc ataattctat acaactgcca gtagctggtc 3781 atatcctcca aagtaatact ctgccggtgt tttgtaatcc aatgactggt gcggtctcct 3841 atggttatag tgctccacat attcctttgt gatttgtcta agttgttgta ccgtttcgca 3901 ctcttcaaga taaagtttct cccacttgta ggaacggaaa aatcgttcta tcctttggtt 3961 gtctaatgct cttccttttc catccataga tattttgata ccgttatttt ttaatagatt 4021 tatgtaatca tcactggtaa actgtgagcc ttgatcactg ttcatgattt caggcttgcc 4081 atatcgcttt atggcctttt ggattgcttc tatgacgaat gtcttatcaa gagtgtttga 4141 tagttcaaac ccaacaatat accgagaata ccagtctatt attgcaacca tatacatgaa 4201 accgcgtttc attcggcaat aggtcacatc tatggaccat acctgattag gatgatcaat 4261 tttcaagttt ctcaacagat atggatacaa attcttacca tgtattcgtt tgctgaggtt 4321 ggggccagga cagaatccat gtatgcccat ttccctcata taacgccggg tccgttttcg 4381 attgatatga atgtgataat ccttgttcaa tatacttgtc atcctgcgat agccatattt 4441 ccggataaga cgcgtaaatt tcatcaatga //