LOCUS NZ_ACVX01000078 2112 bp DNA linear CON 10-NOV-2010 DEFINITION Clostridium thermocellum DSM 2360 ctg00128, whole genome shotgun sequence. ACCESSION NZ_ACVX01000078 NZ_ACVX00000000 VERSION NZ_ACVX01000078.1 GI:256006168 KEYWORDS WGS. SOURCE Clostridium thermocellum DSM 2360 ORGANISM Clostridium thermocellum DSM 2360 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from ACVX01000078. FEATURES Location/Qualifiers source 1..2112 /organism="Clostridium thermocellum DSM 2360" /mol_type="genomic DNA" /strain="DSM 2360" /isolation_source="contaminant of Clostridium thermocellum strain LQ8" /db_xref="taxon:572545" gene <1..315 /locus_tag="ClothDRAFT_2947" CDS <1..315 /locus_tag="ClothDRAFT_2947" /inference="similar to AA sequence:KEGG:ECA3421" /note="KEGG: eca:ECA3421 rhs protein" /codon_start=1 /transl_table=11 /product="rhs protein" /protein_id="ZP_05431084.1" /db_xref="GI:256006169" /translation="SSTLKNLDSLDDFINDPSKLKNLTPDELYNYLKNNGYNPQPLSD GSLKGILFEDGGGFKVNWGGDKLLQYHPAGSGHHGGNAYWKLSSGSTGTIRYDMNGNI LK" gene 329..607 /locus_tag="ClothDRAFT_2948" CDS 329..607 /locus_tag="ClothDRAFT_2948" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431085.1" /db_xref="GI:256006170" /translation="MNDILKQIDNVLHDLGFEVVEINGNKLYHNKNKGSYYRFTFIEA FRAYVIESASNYEEAKNNLFEDGDLFSIDVDEKDFVEKLRADLIKYYC" gene 802..1191 /locus_tag="ClothDRAFT_2949" CDS 802..1191 /locus_tag="ClothDRAFT_2949" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431086.1" /db_xref="GI:256006171" /translation="MSTEKDSMLRVRLTQRQSDELDAIVGELQAQMPEASVTTSSIAR YALEKYVSDHIAKRDGTKIFIEVSTGDATDEDIKNLYDLLSRLFDETKENYSPMVHYM VGEILEPVMMKMARLMKLKKPEVKAGE" gene 1447..>2112 /locus_tag="ClothDRAFT_2950" CDS 1447..>2112 /locus_tag="ClothDRAFT_2950" /inference="protein motif:PFAM:PF09250" /note="PFAM: Bifunctional DNA primase/polymerase; KEGG: mrd:Mrad2831_5166 bifunctional DNA primase/polymerase" /codon_start=1 /transl_table=11 /product="Bifunctional DNA primase/polymerase" /protein_id="ZP_05431087.1" /db_xref="GI:256006172" /db_xref="InterPro:IPR015330" /translation="MKMTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGK HPLYTGWYKNSTTDVEQIKKWWTKTPNANIGIPTGEKSGWLVLDVDDGGDETLSALEA THGKLPDTVTAVTGSGGRHYVFIYPKGRSIPNKTKFAPGLDTRSTGGLIAVAPSIHVS GNRYEWIKDHSPFDRTPAEAPAWLLKLMEKEEVLLTPFEGSSIIAEIKEGSRNSTLTS LAGS" misc_feature 1561..1995 /locus_tag="ClothDRAFT_2950" /note="Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the...; Region: Prim_Pol; cd04859" /db_xref="CDD:80309" misc_feature order(1576..1578,1708..1710,1714..1716,1807..1809, 1873..1875) /locus_tag="ClothDRAFT_2950" /note="polymerase nucleotide-binding site; other site" /db_xref="CDD:80309" misc_feature order(1579..1581,1591..1593,1894..1896,1912..1914) /locus_tag="ClothDRAFT_2950" /note="DNA-binding residues; DNA binding site" /db_xref="CDD:80309" misc_feature order(1669..1671,1708..1710,1714..1716,1789..1791, 1798..1803,1807..1809,1873..1875,1894..1896) /locus_tag="ClothDRAFT_2950" /note="nucleotide binding site; other site" /db_xref="CDD:80309" misc_feature order(1708..1710,1714..1716,1807..1809,1873..1875) /locus_tag="ClothDRAFT_2950" /note="primase nucleotide-binding site; other site" /db_xref="CDD:80309" ORIGIN 1 agtagtactc taaaaaacct tgatagctta gatgatttta ttaatgaccc gagtaaacta 61 aagaatttaa ctcctgacga gttatataat tatttaaaaa acaacggata taaccctcag 121 ccgctaagtg atggctcttt aaaaggaata ctttttgaag atggtggagg atttaaggtc 181 aattggggtg gagacaaact cctgcagtat catccagcag gttcaggtca ccatggtgga 241 aatgcatatt ggaaattatc atcaggttca acagggacaa tacgttatga tatgaatggc 301 aacatactta agtaaagaag gtggggttat gaatgatatt ttgaaacaaa ttgataatgt 361 tttacatgat ctaggattcg aggttgtgga gattaacggt aataaattgt atcataataa 421 aaacaaagga agctattata gatttacttt tatagaggct tttagagctt atgttattga 481 atctgctagt aactatgaag aggctaaaaa taatctattt gaagatggtg acctgttttc 541 aatagatgtg gatgagaagg attttgttga gaaacttaga gctgatttaa taaaatatta 601 ttgttaaaag gttgatcatt gtttatgttt agacagattt aacatgaagt agcttcactt 661 acctgaatcg taaagcacaa ttaatactta atacctagca aaccactaaa acggtaagct 721 gggtttcttt ttatctatac ttgacaacaa gtaatacaaa gtgatacaat aaaaccaatg 781 agaaatacag gaggcgcaat gatgtctaca gaaaaggata gtatgttacg ggtaaggctt 841 acacaaaggc agtcggatga attggacgct attgttggtg agcttcaagc acaaatgcca 901 gaagcaagtg ttaccacatc aagcatagca agatacgctc tggagaagta tgtgagcgac 961 catatcgcca agcgtgatgg taccaagatt tttattgaag tttctaccgg agatgccaca 1021 gatgaggaca taaagaatct ctacgacctt ctttccaggc tgtttgacga aacaaaggag 1081 aattactcac caatggttca ttacatggtt ggagagatat tagagcctgt gatgatgaag 1141 atggcaagac tcatgaagct aaaaaagccg gaggtgaagg caggtgagta agaaaaagta 1201 cattgtccgc tgccctcact gtaatcacag agtatttgaa tgccgattat gctgatgttg 1261 aaatcaaatg cccggtgtgc agaaaggttt ttgaagtgaa gctggagaaa aaggcggggt 1321 aaaaagtgaa taaatctggc acagagccaa aaagggagcg aatgactcac ctatagagcc 1381 tggcagatag tctaaaaact atttgtcagg ctctgtttat tttcagcacg acaggaggtg 1441 agaagtttga aaatgacaat gatggacgca gcaataaaat acgcagaagc caatatcccg 1501 gttatacctc tgcactggat ttgtgaggat ggctcctgct cctgcaaggc agggagcgat 1561 tgcgacagca agggaaagca tccgctatat accggctggt acaagaattc cactactgat 1621 gttgagcaaa taaagaaatg gtggacgaaa acacctaatg ccaatattgg cattcctaca 1681 ggagagaagt ccggctggct ggtgcttgat gtggacgatg gtggtgatga aaccctatct 1741 gcacttgagg caacacatgg aaaacttccg gatacggtta ctgctgttac aggaagtgga 1801 ggtcggcact atgtatttat ataccctaaa ggccggagta ttcctaataa gaccaagttt 1861 gcaccgggtc ttgatacgcg ttcaacaggt ggattgattg ccgtagctcc aagcattcat 1921 gtaagcggta atcggtatga atggataaag gatcattctc cctttgacag aaccccggca 1981 gaagctccag catggttatt aaagcttatg gaaaaggagg aagtattgct tacacccttt 2041 gaaggtagca gtattatagc agagattaag gaaggcagcc gcaatagcac cctgacgagc 2101 cttgccggga gt //