/* File: bstree.h * Author: Jean Thierry-Mieg (mieg@mrc-lmb.cam.ac.uk) * Copyright (C) J Thierry-Mieg and R Durbin, 1992 * ------------------------------------------------------------------- * Acedb is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt * ------------------------------------------------------------------- * This file is part of the ACEDB genome database package, written by * Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and * Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr * * Description: Packing unpacking kernel routines * Exported functions: * HISTORY: * Last edited: Jan 16 11:03 2003 (edgrif) * Created: Tue Mar 10 03:40:07 1992 (mieg) * CVS info: $Id: bstree.h,v 1.9 2003/01/22 14:56:01 edgrif Exp $ *------------------------------------------------------------------- */ #ifndef ACEDB_BSTREE_H #define ACEDB_BSTREE_H #include /*** in bstools.c ***/ void bsTreePrune (BS bs) ; /* prunes bs and everything beyond from tree */ BS bsTreeCopy (BS bs) ; void bsTreeDump (BS bs) ; /* for debugging */ int bsTreeSize (BS bs) ; /* counts the number of nodes in the branch */ /*** in bstree.c - old system ***/ BS bsTreeGet (KEY key) ; void bsTreeStore (BS bs) ; /* implies destruction since fools the tree */ void bsTreeKill (KEY key) ; /* removes key from first cache */ /*** in bs2block.c - new system for store/get ***/ int bsTreeArraySize (BS bs, KEY timeStamp) ; /* in BSdata units */ /* get/store whole B object from/to disk */ BS bsTreeArrayGet (KEY key) ; void bsTreeArrayStore (BS bs, BOOL wait) ; /* non destructive */ void bsTreeArrayFlush (void) ; /* flush the waiting objects */ /* get/store B tree from/to array */ BS bsTreeGetFromArray (Array a, int pos, KEY timeStamp) ; int bsTreeAddToArray (BS bs, Array a, int pos, int size, KEY timeStamp) ; /* store in a starting at pos if size==0 then finds for itself */ #endif /* !ACEDB_BSTREE_H */