.coveragerc
.gitignore
.travis.yml
DEVELOPERS.txt
LICENSE.txt
Makefile
README.md
cap.fa
changelog.txt
readthedocs.yml
requirements.txt
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/conf.py
docs/formatting.rst
docs/index.rst
docs/intro.html
docs/intro.rst
docs/logo.rst
docs/seq.rst
docs/seq_io.rst
docs/_static/qf.css
tests/__init__.py
tests/build_test.sh
tests/test_array_io.py
tests/test_cli.py
tests/test_clustal_io.py
tests/test_data.py
tests/test_fasta_io.py
tests/test_genbank_io.py
tests/test_intelligenetics_io.py
tests/test_matrix.py
tests/test_msf_io.py
tests/test_nbrf_io.py
tests/test_nexus.py
tests/test_nexus_io.py
tests/test_null_io.py
tests/test_phylip_io.py
tests/test_plain_io.py
tests/test_seq.py
tests/test_seq_io.py
tests/test_stockholm_io.py
tests/test_table_io.py
tests/test_transform.py
tests/test_transformseq.py
tests/test_utils.py
tests/test_weblogo.py
tests/data/1CGP.pdb
tests/data/1beo.msf
tests/data/1crn.dssp
tests/data/AST1.fa
tests/data/AST2.fa
tests/data/Rv3829c.fasta
tests/data/TAT_mase_nuc.txt
tests/data/blosum35.blast
tests/data/blosum35.blast.new
tests/data/cap.fa
tests/data/chain_B.fasta
tests/data/clustal.aln
tests/data/clustal181.aln
tests/data/clustal_glualign.aln
tests/data/clustal_headerless.aln
tests/data/clustalw.pir
tests/data/clustalw182.aln
tests/data/clustalw2.aln
tests/data/cox2.gcg
tests/data/cox2.msf
tests/data/cox2.nbrf
tests/data/cox2.phylip
tests/data/cox2b.phylip
tests/data/crab.nbrf
tests/data/dist.20comp
tests/data/dna.msf
tests/data/dna.phy
tests/data/dna.pir
tests/data/example1.saf
tests/data/example2.saf
tests/data/globin.fa
tests/data/intelligenetics.txt
tests/data/pam250.mat
tests/data/pfam.txt
tests/data/pfam_example.txt
tests/data/phylip_test_1.phy
tests/data/phylip_test_2.phy
tests/data/phylip_test_3.phy
tests/data/phylip_test_4.phy
tests/data/phylip_test_5.phy
tests/data/phylip_test_6.corrupt.phy
tests/data/phylip_test_7.corrupt.phy
tests/data/protein.pir
tests/data/readme.txt
tests/data/rhod.pir
tests/data/transfac_matrix.txt
tests/data/transfac_matrix2.txt
tests/data/transfac_matrix3.txt
tests/data/genbank/NT_019265.gb
tests/data/genbank/cor6_6.gb
tests/data/genbank/cox2.gb
tests/data/genbank/dbsource_wrap.gb
tests/data/genbank/iro.gb
tests/data/genbank/noref.gb
tests/data/genbank/origin_line.gb
tests/data/genbank/pri1.gb
tests/data/genbank/protein_refseq.gb
tests/data/nexus/dna.nex
tests/data/nexus/protein.nex
tests/data/nexus/test_Nexus_input.nex
tests/data/scop/dir.cla.scop.txt_test
tests/data/scop/dir.des.scop.txt_test
tests/data/scop/dir.hie.scop.txt_test
tests/data/scop/dirtest.txt
tests/data/scop/domtest.txt
tests/data/scop/raftest.txt
tests/data/ssearch/fasta_out_compact.txt
tests/data/ssearch/megablast.xml
tests/data/ssearch/ssearch_out.txt
tests/data/ssearch/ssearch_out_compact.txt
tests/data/ssearch/ssearch_out_compact2_dbvdb.txt
tests/data/ssearch/ssearch_out_compact_dbvdb.txt
tests/data/ssearch/xbt001.xml
tests/data/ssearch/xbt002.xml
tests/data/ssearch/xbt003.xml
tests/data/ssearch/xbt004.xml
tests/data/ssearch/xbt005.xml
tests/data/stride/stride_test_1.txt
tests/data/stride/stride_test_2.txt
tests/data/stride/stride_test_3.txt
weblogo/__init__.py
weblogo/_cgi.py
weblogo/_cli.py
weblogo/_transformseq.py
weblogo/color.py
weblogo/colorscheme.py
weblogo/data.py
weblogo/logo.py
weblogo/logo_formatter.py
weblogo/logomath.py
weblogo/matrix.py
weblogo/seq.py
weblogo/template.eps
weblogo/transform.py
weblogo.egg-info/PKG-INFO
weblogo.egg-info/SOURCES.txt
weblogo.egg-info/dependency_links.txt
weblogo.egg-info/entry_points.txt
weblogo.egg-info/requires.txt
weblogo.egg-info/top_level.txt
weblogo/data/blosum100.mat
weblogo/data/blosum35.mat
weblogo/data/blosum40.mat
weblogo/data/blosum45.mat
weblogo/data/blosum50.mat
weblogo/data/blosum62.mat
weblogo/data/blosum80.mat
weblogo/data/dbxref.txt
weblogo/data/dist20_comp.mat
weblogo/data/pam120.mat
weblogo/data/pam250.mat
weblogo/data/vtml160
weblogo/htdocs/create.cgi
weblogo/htdocs/create_html_template.html
weblogo/htdocs/examples.html
weblogo/htdocs/index.html
weblogo/htdocs/logo.css
weblogo/htdocs/manual.html
weblogo/htdocs/test.html
weblogo/htdocs/weblogo_changelog.txt
weblogo/htdocs/examples/build_examples.sh
weblogo/htdocs/examples/cap_dna.fa
weblogo/htdocs/examples/cap_dna.png
weblogo/htdocs/examples/cap_hth.fa
weblogo/htdocs/examples/cap_hth.png
weblogo/htdocs/examples/ecoli10.fa
weblogo/htdocs/examples/ecoli10.png
weblogo/htdocs/examples/exon-intron.fa
weblogo/htdocs/examples/exon-intron.png
weblogo/htdocs/examples/globins.fa
weblogo/htdocs/examples/globins.png
weblogo/htdocs/examples/hth.fa
weblogo/htdocs/examples/hth.png
weblogo/htdocs/examples/intron-exon.fa
weblogo/htdocs/examples/intron-exon.png
weblogo/htdocs/examples/lexA.fa
weblogo/htdocs/examples/lexA.png
weblogo/htdocs/examples/prenyl.fa
weblogo/htdocs/img/example.png
weblogo/htdocs/img/feed-icon-16x16.png
weblogo/htdocs/img/weblogo-fig1.png
weblogo/htdocs/img/weblogo_create.png
weblogo/seq_io/__init__.py
weblogo/seq_io/array_io.py
weblogo/seq_io/clustal_io.py
weblogo/seq_io/fasta_io.py
weblogo/seq_io/genbank_io.py
weblogo/seq_io/intelligenetics_io.py
weblogo/seq_io/msf_io.py
weblogo/seq_io/nbrf_io.py
weblogo/seq_io/nexus_io.py
weblogo/seq_io/null_io.py
weblogo/seq_io/phylip_io.py
weblogo/seq_io/plain_io.py
weblogo/seq_io/stockholm_io.py
weblogo/seq_io/table_io.py
weblogo/seq_io/_nexus/Nodes.py
weblogo/seq_io/_nexus/Trees.py
weblogo/seq_io/_nexus/__init__.py
weblogo/utils/__init__.py
weblogo/utils/deoptparse.py