Score E
Sequences producing significant alignments: (bits) Value
emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragment for... 47 1e-05
gb|G27169|G27169 human STS SHGC-31983. 43 1e-04
emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragment for... 39 0.002
gb|G26965|G26965 human STS SHGC-31083. 31 0.76
gb|AF106665.1|AF106665 Mus musculus chromosome 6 clone D6wu... 29 2.2
gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-1095) STS... 29 2.2
gb|G21322|G21322 human STS WI-12250. 29 3.8
emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragment for sequence tagged site, clone
okam5d07r [Kluyveromyces lactis]
Length = 230
Score = 46.9 bits (109), Expect = 1e-05
Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 3/72 (4%)
Frame = +1
Query: 108 NWNQVIDTNLTGAFLGSREAIKYFVEN---DIKGNVINMSSVHEMIPWPLFVHYAASKGG 164
+W QVIDTN+ G F + A+ + D + V+N+S+V+ ++ P Y A+K
Sbjct: 1 SWRQVIDTNINGTFYTLKYALPLMESSSSPDSEAAVVNLSAVNGLVGIPGISPYTATKHA 180
Query: 165 MKLMTETLALEYAPK 179
+ +T+++ALEYA +
Sbjct: 181 VIGITQSVALEYAER 225
gb|G27169|G27169 human STS SHGC-31983.
Length = 594
Score = 43.4 bits (100), Expect = 1e-04
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = -1
Query: 177 APKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQA 236
AP RVN + P + T + + DP + + + P+G + E + FL S ++
Sbjct: 312 APXRXRVNAVXPXVVMTSMGQATWXDPXKAXTMLNRXPLGXFAEVEHVVKAILFLLSDRS 133
Query: 237 SYVTGITLFADGG 249
TG TL +GG
Sbjct: 132 GMTTGSTLPVEGG 94
emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragment for sequence tagged site, clone
okam6d01d [Kluyveromyces lactis]
Length = 199
Score = 39.5 bits (90), Expect = 0.002
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -1
Query: 200 FADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADG 248
F D + + S+IPMG G P+E+ + AS ++Y TG L DG
Sbjct: 157 FVDEDLKNKWHSLIPMGREGLPQELVGAYLYFASDASTYTTGSDLLVDG 11
gb|G26965|G26965 human STS SHGC-31083.
Length = 268
Score = 30.9 bits (68), Expect = 0.76
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = -1
Query: 214 PMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGM 250
PMG G PE++ V A + +TG ++ GG+
Sbjct: 268 PMGXXGDPEDVXDVXAXXXXEXSGXITGTSVEVTGGL 158
gb|AF106665.1|AF106665 Mus musculus chromosome 6 clone D6wum9 map between Nkrp1 and Prp
strain C57BL/6J, sequence tagged site
Length = 299
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 142 NMSSVHEMIPWPLFVHYAASKGGMKLMTETL--ALEYAPKGIRVNNIGPGAIDTPIN 196
++S +I +P F+ S G L+ +L A+ + P GI V+++GP ++ T +N
Sbjct: 172 SLSPTQYLIMFPSFLPCPLSHPGPFLLPSSLVIAVFFLPNGIEVSSLGPFSLRTLLN 2
gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-1095) STS4-889.
Length = 412
Score = 29.3 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 7 DKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRS 40
DKV V GGS+G+GRA+A ++ ++ V R+
Sbjct: 316 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARN 215
gb|G21322|G21322 human STS WI-12250.
Length = 586
Score = 28.6 bits (62), Expect = 3.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 98 PVPSHELSLENWNQ-VIDTNLTGAFLGSREAIKYFVENDI 136
PVP ELS +W+Q + T+ T F S YF N I
Sbjct: 220 PVPMQELSKVHWSQFFLTTSPTMTFFFSHYLANYFFRNSI 339
Database: Non-redundant Database of GenBank STS Division
Posted date: Dec 18, 1999 7:45 PM
Number of letters in database: 32,867,852
Number of sequences in database: 89,405
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6334151
Number of Sequences: 89405
Number of extensions: 57201
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 10,955,950
effective HSP length: 50
effective length of query: 211
effective length of database: 6,485,700
effective search space: 1368482700
effective search space used: 1368482700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 59 (27.4 bits)