Score E
Sequences producing significant alignments: (bits) Value
sp|P29400|CA54_HUMAN COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR 31 1.6
sp|Q09455|YQ34_CAEEL PUTATIVE CUTICLE COLLAGEN C09G5.4 31 2.8
sp|Q07092|CA1F_HUMAN COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR 31 2.8
sp|P20631|CC13_CAEEL CUTICLE COLLAGEN 13 PRECURSOR 31 2.8
sp|P20630|CC12_CAEEL CUTICLE COLLAGEN 12 PRECURSOR 31 2.8
sp|P34391|YLS6_CAEEL PUTATIVE CUTICLE COLLAGEN F09G8.6 30 3.7
sp|P17140|CA24_CAEEL COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR 30 4.8
sp|P39061|CA1H_MOUSE COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSO... 29 6.3
sp|Q02388|CA17_HUMAN COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR ... 29 8.3
sp|P13941|CA13_RAT COLLAGEN ALPHA 1(III) CHAIN 29 8.3
sp|P02461|CA13_HUMAN COLLAGEN ALPHA 1(III) CHAIN PRECURSOR 29 8.3
sp|P29400|CA54_HUMAN COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR
Length = 1685
Score = 31.3 bits (69), Expect = 1.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
P + + K G P IPG+ G PQG G G P GP
Sbjct: 1364 PSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG-PTGP 1404
sp|Q09455|YQ34_CAEEL PUTATIVE CUTICLE COLLAGEN C09G5.4
Length = 323
Score = 30.5 bits (67), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAP 576
G+P PG+GG P+G G GAP
Sbjct: 156 GQPGHPGQGGSQGPAGPRGPAGDAGAP 182
sp|Q07092|CA1F_HUMAN COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR
Length = 1603
Score = 30.5 bits (67), Expect = 2.8
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
P KGE GRP PG+ G P G G G P P
Sbjct: 743 PGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPP 784
sp|P20631|CC13_CAEEL CUTICLE COLLAGEN 13 PRECURSOR
Length = 316
Score = 30.5 bits (67), Expect = 2.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
S G P PG+ G + G P QG G GAP P P
Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292
sp|P20630|CC12_CAEEL CUTICLE COLLAGEN 12 PRECURSOR
Length = 316
Score = 30.5 bits (67), Expect = 2.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
S G P PG+ G + G P QG G GAP P P
Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292
sp|P34391|YLS6_CAEEL PUTATIVE CUTICLE COLLAGEN F09G8.6
Length = 278
Score = 30.1 bits (66), Expect = 3.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
G+P G+GG P+G G GAP P
Sbjct: 155 GQPGADGQGGAPGPAGPEGPAGDAGAPGAP 184
sp|P17140|CA24_CAEEL COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR
Length = 1758
Score = 29.7 bits (65), Expect = 4.8
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
P KGE G+P PG+ G G P GK G GAP P P
Sbjct: 1059 PGFKGETGLPGYGQPGQPGEKG--LPGIP-GKAGRQGAPGSPGQDGLP 1103
Score = 29.7 bits (65), Expect = 4.8
Identities = 18/42 (42%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPG-KGGXNXXGXPQGKXGXXGAPXGP 585
P NKGE G+P PG KG G P G G G P P
Sbjct: 675 PGNKGEAGYGQPGQPGFPGAKGDGGLPGLP-GTPGLQGMPGEP 716
sp|P39061|CA1H_MOUSE COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSOR [CONTAINS: ENDOSTATIN]
Length = 1315
Score = 29.3 bits (64), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
GRP +PG+ G P+G G G P P
Sbjct: 842 GRPGLPGQQGVQGPSGPKGDKGEVGPPGPP 871
sp|Q02388|CA17_HUMAN COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR (LONG-CHAIN COLLAGEN) (LC
COLLAGEN)
Length = 2944
Score = 29.0 bits (63), Expect = 8.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXG 570
P KGE G P +PG+ G P+G G G
Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG 1477
sp|P13941|CA13_RAT COLLAGEN ALPHA 1(III) CHAIN
Length = 636
Score = 29.0 bits (63), Expect = 8.3
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
P KGE P PG G PQG G G+P GP P
Sbjct: 2 PGEKGEGGPPGAAGP--PGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 47
sp|P02461|CA13_HUMAN COLLAGEN ALPHA 1(III) CHAIN PRECURSOR
Length = 1466
Score = 29.0 bits (63), Expect = 8.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 490 SXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
S G P PG G P G G GAP P
Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Database: Non-redundant SwissProt sequences
Posted date: Dec 28, 1999 4:33 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27301044
Number of Sequences: 82258
Number of extensions: 501818
Number of successful extensions: 2382
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2052
Number of HSP's gapped (non-prelim): 298
length of query: 202
length of database: 29,652,561
effective HSP length: 50
effective length of query: 152
effective length of database: 25,539,661
effective search space: 3882028472
effective search space used: 3882028472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 62 (28.6 bits)