align align0 bachrest blastcl3 CAP2 clique consense contml contrast d3hom d4hom dbstat dialign-tx dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dollop dolmove dolpenny drawgram drawtree extract_from_pdb factor fasta3 fasta35 fasta35_t fasta3.bin fasta3_t fasta3_t.bin fastf3 fastf35 fastf35_t fastf3.bin fastf3_t fastf3_t.bin fastm3 fastm35 fastm35_t fastm3.bin fastm3_t fastm3_t.bin fasts3 fasts35 fasts35_t fasts3.bin fasts3_t fasts3_t.bin fastx3 fastx35 fastx35_t fastx3.bin fastx3_t fastx3_t.bin fasty3 fasty35 fasty35_t fasty3.bin fasty3_t fasty3_t.bin fitch flat2phyl font1 font2 font3 font4 font5 font6 funnel garnier gde.bin gel gendist getloc getob ggsearch3 ggsearch35 ggsearch35_t ggsearch3.bin ggsearch3_t ggsearch3_t.bin glsearch3 glsearch35 glsearch35_t glsearch3.bin glsearch3_t glsearch3_t.bin grease heapsortHGL intrest kitsch l4 lalign2list lalign3 lalign35 lav2ps lav2ps.dSYM lav2svg lav2svg.dSYM LoopTool macgde makelinks.sh map_db map_db.dSYM mb mix mocca move mrtrans multidigest neighbor numseq p1hom p2hom pars penny phyl2flat primer3 primer3_core proml promlk prostat prot2nuc protdist protpars reform restdist restml retree ribosome seqboot shuffle splitdb ssearch3 ssearch35 ssearch35_t ssearch3.bin ssearch3_t ssearch3_t.bin tace tacg t_coffee testcode tfastf3 tfastf35 tfastf35_t tfastf3.bin tfastf3_t tfastf3_t.bin tfastm3 tfastm35 tfastm3.bin tfastm3_t tfastm3_t.bin tfasts3 tfasts35 tfasts35_t tfasts3.bin tfasts3_t tfasts3_t.bin tfastx3 tfastx35 tfastx35_t tfastx3.bin tfastx3_t tfastx3_t.bin tfasty3 tfasty35 tfasty35_t tfasty3.bin tfasty3_t tfasty3_t.bin treedist weighbor xace xylem_identify