dbxedam
Function
Description
dbxedam indexes the EDAM ontology in OBO format, and builds
EMBOSS B+tree format index files. These indexes allow access of flat
files larger than 2Gb.
These indexes allow access of flat files larger than 2Gb.
Related application dbxobo can also index the EDAM input
file. dbxedam provides additional index fields for
EDAM-specific namespaces and relations.
Usage
Command line arguments
Input file format
dbxedam reads and indexes the EDAM ontology file in OBO format.
Output file format
dbxedam creates one summary file for the database and two files
for each field indexed.
- dbalias.ent is the master file containing the names of the files
that have been indexed. It is an ASCII file. This file also contains
the database release and date information.
- dbalias.xid is the B+tree index file for the ID names. It is a binary
file.
- dbalias.pxid is an ASCII file containing information regarding the
structure of the ID name index.
Data files
None.
Notes
None.
References
None.
Warnings
None.
Diagnostic Error Messages
None.
Exit status
It always exits with status 0.
Known bugs
None.
Author(s)
History
Target users
Comments