NAME

fasta2AlignerDb.pl

SYNOPSIS


fasta2AlignerDb.pl [options] -o 'options' -f <fasta>

  Options:
  -h    this help message
  -if   fasta 
  -o    command line options for formatdb

Location of blastall must be defined in environmental variable "BLAST_LOC". This script constructs the command line and executes it with a system call. Creates teh database at the location of the input fasta file.

DESCRIPTION

Creates a blast database of the input Fasta where the fasta file is located. Uses formatdb, the location of which is defined by the environmental variable BLAST_LOC.

VERSION

$Revision: 1.3 $

$Date: 2009-08-26 17:18:14 $

AUTHOR(S)

Kurt M. LaButti

HISTORY