/* This file is part of Jellyfish.
Jellyfish is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Jellyfish is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Jellyfish. If not, see .
*/
const char *cite =
"A fast, lock-free approach for efficient parallel counting of occurrences of k-mers\n"
"Guillaume Marcais; Carl Kingsford\n"
"Bioinformatics (2011) 27(6): 764-770 first published online January 7, 2011 doi:10.1093/bioinformatics/btr011\n";
const char *url =
"http://www.cbcb.umd.edu/software/jellyfish\n"
"http://bioinformatics.oxfordjournals.org/content/early/2011/01/07/bioinformatics.btr011";
const char *bibtex =
"@article{Jellyfish2010,\n"
" author = {Mar\\c{c}ais, Guillaume and Kingsford, Carl},\n"
" title = {A fast, lock-free approach for efficient parallel counting of occurrences of k-mers},\n"
" volume = {27},\n"
" number = {6},\n"
" pages = {764-770},\n"
" year = {2011},\n"
" doi = {10.1093/bioinformatics/btr011},\n"
" URL = {http://bioinformatics.oxfordjournals.org/content/27/6/764.abstract},\n"
" eprint = {http://bioinformatics.oxfordjournals.org/content/27/6/764.full.pdf+html},\n"
" journal = {Bioinformatics}\n"
"}";
#include
#include
#include
#include
#include
#include
#include
namespace err = jellyfish::err;
int cite_main(int argc, char *argv[])
{
cite_main_cmdline args(argc, argv);
ofstream_default out(args.output_given ? args.output_arg : 0, std::cout);
if(!out.good())
err::die(err::msg() << "Can't open output file '" << args.output_arg << "'");
if(args.bibtex_flag) {
out << bibtex << std::endl;
} else {
out << "This software has been published. If you use it for your research, cite:\n\n"
<< cite << "\n\n" << url << std::endl;
}
out.close();
return 0;
}