# Optional configure Makefile overrides for samtools. # # Copyright (C) 2015,2017 Genome Research Ltd. # # Author: John Marshall # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER # DEALINGS IN THE SOFTWARE. # This is @configure_input@ # # If you use configure, this file overrides variables and augments rules # in the Makefile to reflect your configuration choices. If you don't run # configure, the main Makefile contains suitable conservative defaults. prefix = @prefix@ exec_prefix = @exec_prefix@ bindir = @bindir@ datarootdir = @datarootdir@ mandir = @mandir@ CC = @CC@ CPPFLAGS = @CPPFLAGS@ CFLAGS = @CFLAGS@ LDFLAGS = @LDFLAGS@ LIBS = @LIBS@ @Hsource@HTSDIR = @HTSDIR@ @Hsource@include $(HTSDIR)/htslib.mk @Hsource@include $(HTSDIR)/htslib_static.mk @Hsource@HTSLIB = $(HTSDIR)/libhts.a @Hsource@HTSLIB_LIB = $(HTSLIB) $(HTSLIB_static_LIBS) @Hsource@HTSLIB_LDFLAGS = $(HTSLIB_static_LDFLAGS) @Hsource@BGZIP = $(HTSDIR)/bgzip HTSLIB_CPPFLAGS = @HTSLIB_CPPFLAGS@ @Hinstall@HTSLIB_LDFLAGS = @HTSLIB_LDFLAGS@ @Hinstall@HTSLIB_LIB = -lhts CURSES_LIB = @CURSES_LIB@