Package: XYLEM
XYLEM - Create and manipulate database subsets
Documentation
Data
Platforms
:
linux-intel, solaris-sparc, solaris-amd64, linux-x86_64, osx-x86_64
Installation
:
Programs
:
clu2ig - Translate multiply aligned sequences in clustal format to Intelligenetics format
features - extract features from GenBank flatfile entries
fetch - retrieve entries from local flatfile database by name or accession number
findkey - Keyword search on local flatfile database
flat2phyl - Convert a GDE flatfile into a Phylip discrete character file
getloc - retrieve entries from a local flatfile database
getob - Parse features from GenBank flatfiles
phyl2flat - Convert a Phylip discrete character file into a GDE flatfile
prot2nuc - Reverse translate protein to degenerate DNA
reform - print a multiple alignment using plain text
ribosome - Translate nucleic acid to protein
splitdb - split a GenBank flatfile into a database containing annotation, sequence and index
xylem_identify - used by FINDKEY to extract LOCUS names from database hits
xylem_shuffle - randomize sequences using a sliding window