seqkit fq2fa - given a list of fastq files, creates the fasta
files
Where:
Run fq2fa in the same folder as your read files.
Input:
read files (eg. .fastq.gz): Before opening this menu,
select one or more read files.
Files may be gzipped or uncompressed.
Parameters:
file extension for fasta files - This file extension
will replace either ".fastq" or ".fq" in the output
filename.
Output:
If an input file has a .gz extension, the output will also be
gzipped.
Output is written to the input directory.
Output will also pop up in a new blreads window with the
statistics from each file in table format. For most programs in
BioLegato that take sequencing reads as input, you can probably
select all files in the output window and then launch the next
program.
Examples: (assuming a file
extension of .fsn)
input
|
output
|
reads_R1.fq.gz
|
reads_R1.fsn.gz
|
otherreads.fastq
|
otherreads.fsn
|
morereads.gz
|
morereads.fsn.gz
|
somemorereads.fq
|
somemorereads.fsn
|