Where:
Run stringtie-merge in the same folder as your gtf files. When
stringtie completes, you should already have a blreads window in
the gtffiles folder.
Input:
gtffiles: Before opening this menu, select files with the
.gtf extension to be merged.
Reference transcriptome (.gtf) - This is the transcriptome
(set of mRNAs) corresponding to the genes in the genome. The file
should probably be in the same directory as the genome file.
Name prefix - This will be added to the name of every gene
transcript in the output, so it should be short. For example, a
descriptive prefix for transcripts from Rhodosporidium
diobovatum, might be Rdio.
Output:
The merged gtf file will be written to the current working
directory eg. gtffiles.