stringtie-merge

Where:

Run stringtie-merge in the same folder as your gtf files. When stringtie completes, you should already have a blreads window in the gtffiles folder.

Input:

gtffiles: Before opening this menu, select files with the .gtf extension to be merged.


Reference transcriptome (.gtf) - This is the transcriptome (set of mRNAs) corresponding to the genes in the genome. The file should probably be in the same directory as the genome file.

Name prefix - This will be added to the name of every gene transcript in the output, so it should be short. For example, a descriptive prefix for transcripts from Rhodosporidium diobovatum, might be Rdio.

Output:

The merged gtf file will be written to the current working directory eg. gtffiles.