Program Features

Import Formats Supported

SCF

Reads lane files from SCF, not gel files.

ABI 3100/3700

Reads lane files from ABI 3100 or ABI3700.

ABI Trace

Reads lane files from ABI 377, not gel files.

CEQ Trace

Reads fragment results text files exported from a CEQ 2000.

Lane Sizing Formulas

Don't Size

Simply uses the scan numbers so no sizing is performed.

Local Southern

Size lane based on the method described by E.M. Southern [1979]

Gel Operations

Show Un-normalized Data

Shows the data before any normalizing was performed.

Normalize on Total Signal

Normalizes the lanes based on the total signal intensity of the lane.

Normalize on Partial Signal

Normalizes the lanes based on the stronger part of the signal intensity of the lane.

Lane Operations

Bin Operations

Bin Scoring Functions

Segregating

Score a segregating population with labels like A and B.

Peak Locating Algorithms

Find Highest

Finds the highest value in a region and records it as a peak.

Cutoff Level Functions

Linear

Sets a constant cutoff point for a region in the lane.

Final Analysis Techniques

Bin Display

Display the scoring of all of the bins.

MapMaker Compatible

Display the scoring of all of the bins in a format compatible with MapMaker.