# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: h01.hmm # target sequence database: /home/bow/db/hmmer/uniprot_sprot.fasta # output directed to file: hmmer_cases/text_hmmsearch_spc_noali.out # per-seq hits tabular output: hmmer_cases/tab_hmmsearch_spc_noali.out # per-dom hits tabular output: hmmer_cases/domtab_hmmsearch_spc_noali.out # show alignments in output: no # sequence reporting threshold: score >= 480 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pkinase [M=260] Accession: PF00069.17 Description: Protein kinase domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-147 492.3 0.0 1.1e-72 249.3 0.0 2.1 2 sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS 2.7e-146 490.7 0.0 8.7e-73 249.7 0.0 2.1 2 sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS 2.2e-145 487.7 0.0 4.6e-72 247.4 0.0 2.1 2 sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS 2.5e-145 487.5 0.0 7.5e-72 246.7 0.0 2.1 2 sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS 2.4e-144 484.2 0.0 2.4e-70 241.7 0.0 2.1 2 sp|Q15349|KS6A2_HUMAN Ribosomal protein S6 kinase alpha-2 OS 5e-144 483.2 0.0 3.9e-70 241.0 0.0 2.2 2 sp|P51812|KS6A3_HUMAN Ribosomal protein S6 kinase alpha-3 OS 5e-144 483.2 0.0 3.9e-70 241.0 0.0 2.2 2 sp|P18654|KS6A3_MOUSE Ribosomal protein S6 kinase alpha-3 OS Domain annotation for each sequence: >> sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS=Mus musculus GN=Rps6ka2 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 241.2 0.0 4.6e-75 3.5e-70 1 260 [] 59 318 .. 59 318 .. 0.95 2 ! 249.3 0.0 1.5e-77 1.1e-72 1 260 [] 415 672 .. 415 672 .. 0.97 >> sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS=Rattus norvegicus GN=Rps6ka1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 239.2 0.0 1.9e-74 1.4e-69 1 258 [. 62 319 .. 62 321 .. 0.94 2 ! 249.7 0.0 1.1e-77 8.7e-73 2 260 .] 419 675 .. 418 675 .. 0.97 >> sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS=Homo sapiens GN=RPS6KA1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 238.6 0.0 2.9e-74 2.2e-69 1 258 [. 62 319 .. 62 321 .. 0.94 2 ! 247.4 0.0 6e-77 4.6e-72 1 260 [] 418 675 .. 418 675 .. 0.97 >> sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS=Gallus gallus GN=RPS6KA PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 239.0 0.0 2.1e-74 1.6e-69 1 259 [. 80 338 .. 80 339 .. 0.95 2 ! 246.7 0.0 9.8e-77 7.5e-72 1 260 [] 435 692 .. 435 692 .. 0.97 >> sp|Q15349|KS6A2_HUMAN Ribosomal protein S6 kinase alpha-2 OS=Homo sapiens GN=RPS6KA2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 241.7 0.0 3.2e-75 2.4e-70 1 260 [] 59 318 .. 59 318 .. 0.95 2 ! 240.7 0.0 6.4e-75 4.9e-70 1 260 [] 415 672 .. 415 672 .. 0.97 >> sp|P51812|KS6A3_HUMAN Ribosomal protein S6 kinase alpha-3 OS=Homo sapiens GN=RPS6KA3 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 240.3 0.0 8.7e-75 6.6e-70 1 260 [] 68 327 .. 68 327 .. 0.95 2 ! 241.0 0.0 5.1e-75 3.9e-70 1 260 [] 422 679 .. 422 679 .. 0.97 >> sp|P18654|KS6A3_MOUSE Ribosomal protein S6 kinase alpha-3 OS=Mus musculus GN=Rps6ka3 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 240.3 0.0 8.7e-75 6.6e-70 1 260 [] 68 327 .. 68 327 .. 0.95 2 ! 241.0 0.0 5.1e-75 3.9e-70 1 260 [] 422 679 .. 422 679 .. 0.97 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (260 nodes) Target sequences: 535698 (190107059 residues) Passed MSV filter: 21115 (0.0394159); expected 10714.0 (0.02) Passed bias filter: 15859 (0.0296044); expected 10714.0 (0.02) Passed Vit filter: 4968 (0.00927388); expected 535.7 (0.001) Passed Fwd filter: 3953 (0.00737916); expected 5.4 (1e-05) Initial search space (Z): 535698 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 39.12u 0.35s 00:00:39.47 Elapsed: 00:00:10.79 # Mc/sec: 4580.89 //