#-------------------- Jalview (March 12, 2010) --------------------------
#

#We use $PWD because Jalview needs the full path to the input file.
item:Jalview - protein alignment viewer
itemmethod:(tr "~" "-" <in1 | readseq -a -p -f=PEARSON | sed "s/:.*//" |sed "s/\*//" > in1.fsa; Jalview -open $PWD/in1.fsa; rm in1 in1.fsa)&
itemhelp:
itemopen:gde_help_viewer.csh

in:in1
informat:genbank
insave: