#------------------- Genomes ( 4/10/06) -------------------------- item:TaxIDs for all complete genomes in SeqHound itemmethod: $BIRCH/script/leash -mn SHoundAllGenomes -of allgenomes.taxid; python $BIRCH/script/list2flat.py allgenomes.taxid in1.flat; rm allgenomes.taxid; $GDEOUTPUT itemhelp:doc/dGDE/SeqHound_API_Functions.html#SHoundAllGenomes itemopen:browser.csh in:in1 informat:flat arg:GDEOUTPUT arglabel:Output to new GDE window? argtype:chooser # Problem with Linux-Intel version of GDE (doesn't affect Solaris): # If we declare an 'out' file, then it must always exist, # even if we don't use it. Otherwise, gde will look for the file # after it is done, and crash. argchoice:Yes:(echo '' > out1; dgde in1.flat; $RM_CMD -f in1.*)& argchoice:No:mv in1.flat out1 argvalue:0 out:out1 outformat:gde