/home/psgendb/local/install/symap_42/ext/mummer/lintel64/nucmer  -maxmatch  -p data/pseudo_pseudo/demo_draft_to_demo_draft/anchors/pseudo_pseudo_self/demo_draft.pp1.fasta.demo_draft.pp1.fasta.nucmer /home/psgendb/local/install/symap_42/data/pseudo/demo_draft/sequence/pseudo/preproc2/demo_draft.pp1.fasta /home/psgendb/local/install/symap_42/data/pseudo/demo_draft/sequence/pseudo/preproc2/demo_draft.pp1.fasta
1: PREPARING DATA
2,3: RUNNING mummer AND CREATING CLUSTERS
# reading input file "data/pseudo_pseudo/demo_draft_to_demo_draft/anchors/pseudo_pseudo_self/demo_draft.pp1.fasta.demo_draft.pp1.fasta.nucmer.ntref" of length 636866
# construct suffix tree for sequence of length 636866
# (maximum reference length is 2305843009213693948)
# (maximum query length is 18446744073709551615)
# process 6368 characters per dot
#....................................................................................................
# CONSTRUCTIONTIME ./ext/mummer/lintel64/mummer data/pseudo_pseudo/demo_draft_to_demo_draft/anchors/pseudo_pseudo_self/demo_draft.pp1.fasta.demo_draft.pp1.fasta.nucmer.ntref 0.13
# reading input file "/home/psgendb/local/install/symap_42/data/pseudo/demo_draft/sequence/pseudo/preproc2/demo_draft.pp1.fasta" of length 636865
# matching query-file "/home/psgendb/local/install/symap_42/data/pseudo/demo_draft/sequence/pseudo/preproc2/demo_draft.pp1.fasta"
# against subject-file "data/pseudo_pseudo/demo_draft_to_demo_draft/anchors/pseudo_pseudo_self/demo_draft.pp1.fasta.demo_draft.pp1.fasta.nucmer.ntref"
# COMPLETETIME ./ext/mummer/lintel64/mummer data/pseudo_pseudo/demo_draft_to_demo_draft/anchors/pseudo_pseudo_self/demo_draft.pp1.fasta.demo_draft.pp1.fasta.nucmer.ntref 0.63
# SPACE ./ext/mummer/lintel64/mummer data/pseudo_pseudo/demo_draft_to_demo_draft/anchors/pseudo_pseudo_self/demo_draft.pp1.fasta.demo_draft.pp1.fasta.nucmer.ntref 1.24
4: FINISHING DATA
Completed alignment 1: 2 sec