/* test/split/test_parse_args.c -- split test cases. Copyright (C) 2014 Genome Research Ltd. Author: Martin O. Pollard Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ #include #include "../../bam_split.c" #include "../test.h" #include #include void setup_test_1(int* argc, char*** argv) { *argc = 1; *argv = (char**)calloc(sizeof(char*), 1); (*argv)[0] = strdup("prog_name"); } bool check_test_1(const parsed_opts_t* opts) { if ( opts->merged_input_name != NULL || opts->unaccounted_header_name != NULL || opts->unaccounted_name != NULL || strcmp(opts->output_format_string,"%*_%#.%.") || opts->verbose == true ) return false; return true; } void setup_test_2(int* argc, char*** argv) { *argc = 2; *argv = (char**)calloc(sizeof(char*), 2); (*argv)[0] = strdup("prog_name"); (*argv)[1] = strdup("merged.bam"); } bool check_test_2(const parsed_opts_t* opts) { if ( opts->merged_input_name == NULL || strcmp(opts->merged_input_name, "merged.bam") || opts->unaccounted_header_name != NULL || opts->unaccounted_name != NULL || strcmp(opts->output_format_string,"%*_%#.%.") || opts->verbose == true ) return false; return true; } int main(int argc, char**argv) { // test state const int NUM_TESTS = 2; int verbose = 0; int success = 0; int failure = 0; int getopt_char; while ((getopt_char = getopt(argc, argv, "v")) != -1) { switch (getopt_char) { case 'v': ++verbose; break; default: printf( "usage: test_parse_args [-v]\n\n" " -v verbose output\n" ); break; } } // Setup stdout and stderr redirect kstring_t res_stdout = { 0, 0, NULL }; kstring_t res_stderr = { 0, 0, NULL }; FILE* orig_stdout = fdopen(dup(STDOUT_FILENO), "a"); // Save stderr FILE* orig_stderr = fdopen(dup(STDERR_FILENO), "a"); // Save stderr char* tempfname_stdout = (optind < argc)? argv[optind] : "test_parse_args.tmp.o"; char* tempfname_stderr = (optind < argc)? argv[optind] : "test_parse_args.tmp.e"; FILE* check_stdout = NULL; FILE* check_stderr = NULL; // Cleanup getopt optind = 1; // setup if (verbose) fprintf(orig_stdout,"BEGIN test 1\n"); // test eliminating a tag that isn't there int argc_1; char** argv_1; setup_test_1(&argc_1, &argv_1); if (verbose > 1) { fprintf(orig_stdout, "argc: %d\n", argc_1); } if (verbose) fprintf(orig_stdout,"RUN test 1\n"); // test xfreopen(tempfname_stdout, "w", stdout); // Redirect stdout to pipe xfreopen(tempfname_stderr, "w", stderr); // Redirect stderr to pipe parsed_opts_t* result_1 = parse_args(argc_1, argv_1); fclose(stdout); fclose(stderr); if (verbose) fprintf(orig_stdout, "END RUN test 1\n"); if (verbose > 1) { fprintf(orig_stdout, "argc: %d\n", argc_1); } // check result res_stdout.l = res_stderr.l = 0; check_stdout = fopen(tempfname_stdout, "r"); check_stderr = fopen(tempfname_stderr, "r"); if ( !result_1 && kgetline(&res_stdout, (kgets_func *)fgets, check_stdout) >= 0 && !feof(check_stdout) && res_stdout.l > 0 && kgetline(&res_stderr, (kgets_func *)fgets, check_stderr) < 0 && (feof(check_stderr) || res_stderr.l == 0)) { ++success; } else { ++failure; if (verbose) fprintf(orig_stdout, "FAIL test 1\n"); } fclose(check_stderr); fclose(check_stdout); // teardown cleanup_opts(result_1); int i = 0; for (i = 0; i < argc_1; ++i) { free(argv_1[i]); } free(argv_1); if (verbose) fprintf(orig_stdout, "END test 1\n"); // Cleanup getopt optind = 1; if (verbose) fprintf(orig_stdout, "BEGIN test 2\n"); // test eliminating a tag that is there int argc_2; char** argv_2; setup_test_2(&argc_2, &argv_2); if (verbose > 1) { fprintf(orig_stdout, "argc: %d\n", argc_2); } if (verbose) fprintf(orig_stdout, "RUN test 2\n"); // test xfreopen(tempfname_stdout, "w", stdout); // Redirect stdout to pipe xfreopen(tempfname_stderr, "w", stderr); // Redirect stderr to pipe parsed_opts_t* result_2 = parse_args(argc_2, argv_2); fclose(stdout); fclose(stderr); if (verbose) fprintf(orig_stdout, "END RUN test 2\n"); if (verbose > 1) { fprintf(orig_stdout, "argc: %d\n", argc_2); } // check result res_stdout.l = res_stderr.l = 0; check_stdout = fopen(tempfname_stdout, "r"); check_stderr = fopen(tempfname_stderr, "r"); if ( result_2 && check_test_2(result_2) && kgetline(&res_stdout, (kgets_func *)fgets, check_stdout) < 0 && (feof(check_stdout) || res_stdout.l == 0) && kgetline(&res_stderr, (kgets_func *)fgets, check_stderr) < 0 && (feof(check_stderr) || res_stderr.l == 0)) { ++success; } else { ++failure; if (verbose) fprintf(orig_stdout, "FAIL test 2\n"); } fclose(check_stdout); fclose(check_stderr); // teardown cleanup_opts(result_2); int j = 0; for (j = 0; j < argc_2; ++j) { free(argv_2[j]); } free(argv_2); if (verbose) fprintf(orig_stdout, "END test 2\n"); // Cleanup free(res_stdout.s); free(res_stderr.s); remove(tempfname_stdout); remove(tempfname_stderr); fclose(orig_stdout); if (failure > 0) fprintf(orig_stderr, "%d failures %d successes\n", failure, success); fclose(orig_stderr); return (success == NUM_TESTS)? EXIT_SUCCESS : EXIT_FAILURE; }