test_GenBank
Testing parsers...
***Record from noref.gb with the FeatureParser
Seq: Seq('GGCAAGATGGCGCCGGTGGGGGTGGAGAAGAAGCTGCTGCTAGGTCCCAACGGG...AAA', IUPACAmbiguousDNA())
Id: NM_006141.1
Name: NM_006141
Description Homo sapiens dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2), mRNA.
Annotations***
Key: accessions
Value: ['NM_006141']
Key: comment
Value: PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AF035812.1.
Key: data_file_division
Value: PRI
Key: date
Value: 01-NOV-2000
Key: gi
Value: 5453633
Key: keywords
Value: ['']
Key: organism
Value: Homo sapiens
Key: sequence_version
Value: 1
Key: source
Value: human
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo']
Features
type: source
location: [0:1622](+)
qualifiers:
Key: db_xref, Value: ['taxon:9606']
Key: map, Value: ['16']
Key: organism, Value: ['Homo sapiens']
type: gene
location: [0:1622](+)
qualifiers:
Key: db_xref, Value: ['LocusID:1783']
Key: gene, Value: ['DNCLI2']
Key: note, Value: ['LIC2']
type: CDS
location: [6:1485](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['LocusID:1783', 'GI:5453634']
Key: gene, Value: ['DNCLI2']
Key: note, Value: ['similar to R. norvegicus and G. gallus dynein light intermediate chain 2, Swiss-Prot Accession Numbers Q62698 and Q90828, respectively']
Key: product, Value: ['dynein, cytoplasmic, light intermediate polypeptide 2']
Key: protein_id, Value: ['NP_006132.1']
Key: translation, Value: ['MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVTNSSTENEA']
DB cross refs []
***Record from cor6_6.gb with the FeatureParser
Seq: Seq('AACAAAACACACATCAAAAACGATTTTACAAGAAAAAAATATCTGAAAAATGTC...AAA', IUPACAmbiguousDNA())
Id: X55053.1
Name: ATCOR66M
Description A.thaliana cor6.6 mRNA.
Annotations***
Key: accessions
Value: ['X55053']
Key: comment
Value: Cor6.6 homologous to KIN1. KIN1 is a cold-regulated Arabidopsis
gene with suggested similarity to type I fish antifreeze proteins.
Key: data_file_division
Value: PLN
Key: date
Value: 02-MAR-1992
Key: gi
Value: 16229
Key: keywords
Value: ['antifreeze protein homology', 'cold-regulated gene', 'cor6.6 gene', 'KIN1 homology']
Key: organism
Value: Arabidopsis thaliana
References*
location: [0:513]
authors: Thomashow,M.F.
title: Direct Submission
journal: Submitted (01-FEB-1991) M.F. Thomashow, Dept. Crop and Soil Sciences, Dept. Microbiology, Michigan State University, East Lansing, Michigan 48824, USA
medline id:
pubmed id:
comment:
location: [0:513]
authors: Gilmour,S.J., Artus,N.N. and Thomashow,M.F.
title: cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana
journal: Plant Mol. Biol. 18 (1), 13-21 (1992)
medline id: 92119220
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: thale cress
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta', 'Tracheophyta', 'euphyllophytes', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'Rosidae', 'Capparales', 'Brassicaceae', 'Arabidopsis']
Features
type: source
location: [0:513](+)
qualifiers:
Key: db_xref, Value: ['taxon:3702']
Key: organism, Value: ['Arabidopsis thaliana']
Key: strain, Value: ['Columbia']
type: gene
location: [49:250](+)
qualifiers:
Key: gene, Value: ['cor6.6']
type: CDS
location: [49:250](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:16230', 'SWISS-PROT:P31169']
Key: gene, Value: ['cor6.6']
Key: note, Value: ['cold regulated']
Key: protein_id, Value: ['CAA38894.1']
Key: translation, Value: ['MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK']
DB cross refs []
***Record from cor6_6.gb with the FeatureParser
Seq: Seq('ATTTGGCCTATAAATATAAACCCTTAAGCCCACATATCTTCTCAATCCATCACA...ATA', IUPACAmbiguousDNA())
Id: X62281.1
Name: ATKIN2
Description A.thaliana kin2 gene.
Annotations***
Key: accessions
Value: ['X62281']
Key: data_file_division
Value: PLN
Key: date
Value: 23-JUL-1992
Key: gi
Value: 16353
Key: keywords
Value: ['kin2 gene']
Key: organism
Value: Arabidopsis thaliana
References*
location: [0:880]
authors: Borg-Franck,M.E.
title: Direct Submission
journal: Submitted (27-SEP-1991) M.E. Borg-Franck, Inst of Biotechnology, University of Helsinki, Karvaamokuja 3, SF-00380 Helsinki, FINLAND
medline id:
pubmed id:
comment:
location: [0:880]
authors: Kurkela,S. and Borg-Franck,M.
title: Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana
journal: Plant Mol. Biol. 19 (4), 689-692 (1992)
medline id: 92329728
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: thale cress
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta', 'Tracheophyta', 'euphyllophytes', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'Rosidae', 'Capparales', 'Brassicaceae', 'Arabidopsis']
Features
type: source
location: [0:880](+)
qualifiers:
Key: db_xref, Value: ['taxon:3702']
Key: organism, Value: ['Arabidopsis thaliana']
Key: strain, Value: ['ssp. L. Heynh, Colombia']
type: TATA_signal
location: [8:20](+)
qualifiers:
type: exon
location: [43:160](+)
qualifiers:
Key: gene, Value: ['kin2']
Key: number, Value: ['1']
type: prim_transcript
location: [43:>579](+)
qualifiers:
Key: gene, Value: ['kin2']
type: mRNA
location: join{[43:160](+), [319:390](+), [503:>579](+)}
qualifiers:
Key: gene, Value: ['kin2']
type: gene
location: [43:579](+)
qualifiers:
Key: gene, Value: ['kin2']
type: CDS
location: join{[103:160](+), [319:390](+), [503:579](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:16354', 'SWISS-PROT:P31169']
Key: gene, Value: ['kin2']
Key: protein_id, Value: ['CAA44171.1']
Key: translation, Value: ['MSETNKNAFQAGQAAGKAERRRAMFCWTRPRMLLLQLELPRNRAGKSISDAAVGGVNFVKDKTGLNK']
type: intron
location: [160:319](+)
qualifiers:
Key: gene, Value: ['kin2']
Key: number, Value: ['1']
type: exon
location: [319:390](+)
qualifiers:
Key: gene, Value: ['kin2']
Key: number, Value: ['2']
type: intron
location: [390:503](+)
qualifiers:
Key: gene, Value: ['kin2']
Key: number, Value: ['2']
type: exon
location: [503:>579](+)
qualifiers:
Key: gene, Value: ['kin2']
Key: number, Value: ['3']
type: polyA_signal
location: [619:625](+)
qualifiers:
type: polyA_signal
location: [640:646](+)
qualifiers:
type: polyA_site
location: [784:785](+)
qualifiers:
type: polyA_site
location: [799:800](+)
qualifiers:
DB cross refs []
***Record from cor6_6.gb with the FeatureParser
Seq: Seq('AAAAAAACACAACAAAACTCAATAAATAAACAAATGGCAGACAACAAGCAGAGC...TTC', IUPACAmbiguousDNA())
Id: M81224.1
Name: BNAKINI
Description Rapeseed Kin1 protein (kin1) mRNA, complete cds.
Annotations***
Key: accessions
Value: ['M81224']
Key: data_file_division
Value: PLN
Key: date
Value: 27-APR-1993
Key: gi
Value: 167145
Key: keywords
Value: ['']
Key: organism
Value: Brassica napus
References*
location: [0:441]
authors: Orr,W., Iu,B., White,T., Robert,L.S. and Singh,J.
title: Nucleotide sequence of a winter B. napus Kin 1 cDNA
journal: Plant Physiol. 98, 1532-1534 (1992)
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Brassica napus (cultivar Jet neuf) cold induced leaf cDNA to mRNA
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Brassica']
Features
type: source
location: [0:441](+)
qualifiers:
Key: cultivar, Value: ['Jet neuf']
Key: db_xref, Value: ['taxon:3708']
Key: dev_stage, Value: ['cold induced']
Key: organism, Value: ['Brassica napus']
Key: tissue_type, Value: ['leaf']
type: gene
location: [33:300](+)
qualifiers:
Key: gene, Value: ['kin1']
type: CDS
location: [33:231](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:167146']
Key: evidence, Value: ['experimental']
Key: gene, Value: ['kin1']
Key: protein_id, Value: ['AAA32993.1']
Key: translation, Value: ['MADNKQSFQAGQASGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK']
type: polyA_signal
location: [240:247](+)
qualifiers:
Key: gene, Value: ['kin1']
Key: note, Value: ['putative']
type: polyA_signal
location: [293:300](+)
qualifiers:
Key: gene, Value: ['kin1']
Key: note, Value: ['putative']
type: polyA_site
location: [440:441](+)
qualifiers:
Key: gene, Value: ['kin1']
DB cross refs []
***Record from cor6_6.gb with the FeatureParser
Seq: Seq('GGACAAGGCCAAGGATGCTGCTGCTGCAGCTGGAGCTTCCGCGCAACAAGTAAA...GGC', IUPACAmbiguousDNA())
Id: AJ237582.1
Name: ARU237582
Description Armoracia rusticana csp14 gene (partial), exons 2-3.
Annotations***
Key: accessions
Value: ['AJ237582']
Key: data_file_division
Value: PLN
Key: date
Value: 24-MAR-1999
Key: gi
Value: 4538892
Key: keywords
Value: ['cold shock protein', 'csp14 gene']
Key: organism
Value: Armoracia rusticana
References*
location: [0:206]
authors: Baymiev,A.K., Gimalov,F.R. and Vakhitov,V.A.
title:
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:206]
authors: Baymiev,A.K.
title: Direct Submission
journal: Submitted (20-MAR-1999) Baymiev A.K., Departament of Biochemistry and Cytochemistry, Ufa Scientific Centre, pr. Oktyabrya 69, Ufa, Bashkortostan, Russia, 450054, RUSSIA
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: horseradish
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta', 'Tracheophyta', 'euphyllophytes', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'Rosidae', 'Capparales', 'Brassicaceae', 'Armoracia']
Features
type: source
location: [0:206](+)
qualifiers:
Key: country, Value: ['Russia:Bashkortostan']
Key: db_xref, Value: ['taxon:3704']
Key: organism, Value: ['Armoracia rusticana']
type: mRNA
location: join{[<0:48](+), [142:>206](+)}
qualifiers:
Key: gene, Value: ['csp14']
type: exon
location: [0:48](+)
qualifiers:
Key: gene, Value: ['csp14']
Key: number, Value: ['2']
type: gene
location: [0:206](+)
qualifiers:
Key: gene, Value: ['csp14']
type: CDS
location: join{[<0:48](+), [142:>206](+)}
qualifiers:
Key: codon_start, Value: ['2']
Key: db_xref, Value: ['GI:4538893']
Key: gene, Value: ['csp14']
Key: product, Value: ['cold shock protein']
Key: protein_id, Value: ['CAB39890.1']
Key: translation, Value: ['DKAKDAAAAAGASAQQAGKNISDAAAGGVNFVKEKTG']
type: intron
location: [48:142](+)
qualifiers:
Key: gene, Value: ['csp14']
Key: number, Value: ['2']
type: exon
location: [142:206](+)
qualifiers:
Key: gene, Value: ['csp14']
Key: number, Value: ['3']
DB cross refs []
***Record from cor6_6.gb with the FeatureParser
Seq: Seq('AACAAAACTCAATAAATAAACAAATGGCAGACAACAAGCAGAGCTTCCAAGCCG...TTT', IUPACAmbiguousDNA())
Id: L31939.1
Name: BRRBIF72
Description Brassica rapa (clone bif72) kin mRNA, complete cds.
Annotations***
Key: accessions
Value: ['L31939']
Key: data_file_division
Value: PLN
Key: date
Value: 01-MAR-1996
Key: gi
Value: 1209261
Key: keywords
Value: ['']
Key: organism
Value: Brassica rapa
References*
location: [0:282]
authors: Kim,J.-B., Kim,H.-U., Park,B.-S., Yun,C.-H., Cho,W.-S., Ryu,J.-C. and Chung,T.-Y.
title: Nucleotide sequences of kin gene in chinese cabbage
journal: Unpublished (1994)
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Brassica rapa flower cDNA to mRNA
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Brassica']
Features
type: source
location: [0:282](+)
qualifiers:
Key: db_xref, Value: ['taxon:3711']
Key: dev_stage, Value: ['flower']
Key: organism, Value: ['Brassica rapa']
type: gene
location: [23:221](+)
qualifiers:
Key: gene, Value: ['kin']
type: CDS
location: [23:221](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:1209262']
Key: gene, Value: ['kin']
Key: protein_id, Value: ['AAA91051.1']
Key: translation, Value: ['MADNKQSFQAGQAAGRAEEKGNVLLMDKVKDAATAAGALQTAGQKITEAAGGAVNLVKEKTGMNK']
DB cross refs []
***Record from cor6_6.gb with the FeatureParser
Seq: Seq('ATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCCGCTGGTCGTGCTGAG...TAG', IUPACAmbiguousDNA())
Id: AF297471.1
Name: AF297471
Description Brassica napus BN28a (BN28a) gene, complete cds.
Annotations***
Key: accessions
Value: ['AF297471']
Key: data_file_division
Value: PLN
Key: date
Value: 14-SEP-2000
Key: gi
Value: 10121868
Key: keywords
Value: ['']
Key: organism
Value: Brassica napus
References*
location: [0:497]
authors: Byass,L.J. and Flanagan,A.M.
title: BN28a, a low temperature-induced gene of Brassica napus
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:497]
authors: Byass,L.J. and Flanagan,A.M.
title: Direct Submission
journal: Submitted (18-AUG-2000) AFNS, University of Alberta, 4-10 Agriculture/Forestry Centre, Edmonton, Alberta T6G 2P5, Canada
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: rape
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Brassica']
Features
type: source
location: [0:497](+)
qualifiers:
Key: cultivar, Value: ['Cascade']
Key: db_xref, Value: ['taxon:3708']
Key: organism, Value: ['Brassica napus']
type: mRNA
location: join{[<0:54](+), [240:309](+), [422:>497](+)}
qualifiers:
Key: gene, Value: ['BN28a']
Key: product, Value: ['BN28a']
type: gene
location: [<0:>497](+)
qualifiers:
Key: gene, Value: ['BN28a']
type: CDS
location: join{[0:54](+), [240:309](+), [422:497](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:10121869']
Key: gene, Value: ['BN28a']
Key: note, Value: ['low temperature-induced; similar to Brassica napus Kin1 in Accession Number M81224']
Key: product, Value: ['BN28a']
Key: protein_id, Value: ['AAG13407.1']
Key: translation, Value: ['MADNKQSFQAGQAAGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK']
DB cross refs []
***Record from iro.gb with the FeatureParser
Seq: Seq('CACAGGCCCAGAGCCACTCCTGCCTACAGGTTCTGAGGGCTCAGGGGACCTCCT...AAA', IUPACAmbiguousDNA())
Id: AL109817.1
Name: IRO125195
Description Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 125195.
Annotations***
Key: accessions
Value: ['AL109817']
Key: comment
Value: EURO-IMAGE Consortium Contact: Auffray C
CNRS UPR 420 - Genetique Moleculaire et Biologie du Developement
IFR 1221 - Rue Guy Moquet 19, Batiment G - BP 8
94801 Villejuif Cedex, FRANCE
Tel: ++33-1-49 58 34 98
Fax: ++33-1-49 58 35 09
e-mail: auffray@infobiogen.fr
This clone is available royalty-free through IMAGE Consortium
Distributors.
IMPORTANT: This sequence represents the full insert of this IMAGE
cDNA clone. No attempt has been made to verify whether this
corresponds to the full-length of the original mRNA from which it
was derived.
Key: data_file_division
Value: PRI
Key: date
Value: 11-AUG-1999
Key: gi
Value: 5731880
Key: keywords
Value: ['FLI_CDNA']
Key: organism
Value: Homo sapiens
References*
location: [0:1326]
authors: Auffray,C., Ansorge,W., Ballabio,A., Estivill,X., Gibson,K., Lehrach,H., Poustka,A. and Lundeberg,J.
title: The European IMAGE consortium for integrated Molecular analysis of human gene transcripts
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:1326]
authors: Carim,L., Estivill,X., Sumoy,L. and Escarceller,M.
title: Direct Submission
journal: Submitted (11-AUG-1999) Dept. Genetica Molecular, Institut de Recerca Oncologica (IRO), Hospital Duran i Reynals, Autovia de Castelldefels Km 2,7 L'Hospitalet de Llobregat, 08907 Barcelona, Catalunya, SPAIN. Tel: ++34-93-260-7775 Fax: ++34-93-260-7776 WWW site: http://www.iro.es e-mail enquiries: lsumoy@iro.es, mescarceller@iro.es
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: human
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo']
Features
type: source
location: [0:1326](+)
qualifiers:
Key: chromosome, Value: ['21']
Key: clone, Value: ['IMAGE cDNA clone 125195']
Key: clone_lib, Value: ['Soares fetal liver spleen 1NFLS']
Key: db_xref, Value: ['taxon:9606']
Key: note, Value: ['contains Alu repeat; likely to be be derived from unprocessed nuclear RNA or genomic DNA; encodes putative exons identical to FTCD; formimino transferase cyclodeaminase; formimino transferase (EC 2.1.2.5) /formimino tetrahydro folate cyclodeaminase (EC 4.3.1.4)']
Key: organism, Value: ['Homo sapiens']
type: gene
location: [340:756](+)
qualifiers:
Key: gene, Value: ['FTCD']
type: exon
location: [340:384](+)
qualifiers:
Key: gene, Value: ['FTCD']
Key: number, Value: ['1']
type: intron
location: [384:617](+)
qualifiers:
Key: gene, Value: ['FTCD']
Key: number, Value: ['1']
type: exon
location: [617:756](+)
qualifiers:
Key: gene, Value: ['FTCD']
Key: number, Value: ['2']
DB cross refs []
***Record from pri1.gb with the FeatureParser
Seq: Seq('GATCATGCATGCACTCCAGCCTGGGACAAGAGCGAAACTCCGTCTCAAAAAAAA...GCA', IUPACAmbiguousDNA())
Id: U05344.1
Name: HUGLUT1
Description Human fructose transporter (GLUT5) gene, promoter and exon 1.
Annotations***
Key: accessions
Value: ['U05344']
Key: data_file_division
Value: PRI
Key: date
Value: 16-NOV-1994
Key: gi
Value: 452475
Key: keywords
Value: ['']
Key: organism
Value: Homo sapiens
References*
location: [0:741]
authors: Mahraoui,L., Takeda,J., Mesonero,J., Chantret,I., Dussaulx,E., Bell,G.I. and Brot-Laroche,E.
title: Regulation of expression of the human fructose transporter (GLUT5) by cyclic AMP
journal: Biochem. J. 301 (Pt 1), 169-175 (1994)
medline id: 94311827
pubmed id:
comment:
location: [0:741]
authors: Takeda,J.
title: Direct Submission
journal: Submitted (24-JAN-1994) Jun Takeda, Howard Hughes Medical Institute, The University of Chicago, 5841 S. Maryland Ave., Chicago, IL 60637, USA
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: human
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo']
Features
type: source
location: [0:741](+)
qualifiers:
Key: chromosome, Value: ['1']
Key: clone, Value: ['lambda hGT5-157']
Key: clone_lib, Value: ['partial Hae III/Alu I fetal human liver library in lambda Ch4A of Maniatis']
Key: db_xref, Value: ['taxon:9606']
Key: dev_stage, Value: ['fetal']
Key: map, Value: ['1p31']
Key: organism, Value: ['Homo sapiens']
Key: tissue_type, Value: ['liver']
type: repeat_region
location: [0:73](+)
qualifiers:
Key: rpt_family, Value: ['Alu']
type: promoter
location: [0:513](+)
qualifiers:
type: 5'UTR
location: [513:609](+)
qualifiers:
Key: gene, Value: ['GLUT5']
type: exon
location: [513:642](+)
qualifiers:
Key: gene, Value: ['GLUT5']
Key: number, Value: ['1']
Key: product, Value: ['fructose transporter']
DB cross refs []
***Record from arab1.gb with the FeatureParser
Seq: Seq('AAGCTTTGCTACGATCTACATTTGGGAATGTGAGTCTCTTATTGTAACCTTAGG...CTT', IUPACAmbiguousDNA())
Id: AC007323.5
Name: AC007323
Description Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
Annotations***
Key: accessions
Value: ['AC007323']
Key: comment
Value: On Dec 16, 1999 this sequence version replaced gi:5729683.
Key: data_file_division
Value: PLN
Key: date
Value: 19-JAN-2000
Key: gi
Value: 6587720
Key: keywords
Value: ['HTG']
Key: organism
Value: Arabidopsis thaliana
References*
location: [0:86436]
authors: Dunn,P., Shinn,P., Brooks,S., Buehler,E., Chao,Q., Johnson-Hopson,C., Khan,S., Kim,C., Altafi,H., Bei,Q., Chin,C., Chiou,J., Choi,E., Conn,L., Conway,A., Gonzales,A., Hansen,N., Howing,B., Koo,T., Lam,B., Lee,J., Lenz,C., Li,J., Liu,A., Liu,K., Liu,S., Mukharsky,N., Nguyen,M., Palm,C., Pham,P., Sakano,H., Schwartz,J., Southwick,A., Thaveri,A., Toriumi,M., Vaysberg,M., Yu,G., Federspiel,N.A., Theologis,A. and Ecker,J.R.
title: Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:86436]
authors: Ecker,J.R.
title: Direct Submission
journal: Submitted (17-APR-1999) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th Street and Hamilton Walk, Philadelphia, Pennsylvania 19104-6018, USA
medline id:
pubmed id:
comment:
location: [0:86436]
authors: Ecker,J.R.
title: Direct Submission
journal: Submitted (11-AUG-1999) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th Street and Hamilton Walk, Philadelphia, Pennsylvania 19104-6018, USA
medline id:
pubmed id:
comment:
location: [0:86436]
authors: Ecker,J.R.
title: Direct Submission
journal: Submitted (16-DEC-1999) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th Street and Hamilton Walk, Philadelphia, Pennsylvania 19104-6018, USA
medline id:
pubmed id:
comment:
location: [0:86436]
authors: Chao,Q., Brooks,S., Buehler,E., Johnson-Hopson,C., Khan,S., Kim,C., Shinn,P., Altafi,H., Bei,B., Chin,C., Chiou,J., Choi,E., Conn,L., Conway,A., Gonzalez,A., Hansen,N., Howing,B., Koo,T., Lam,B., Lee,J., Lenz,C., Li,J., Liu,A., Liu,J., Liu,S., Mukharsky,N., Nguyen,M., Palm,C., Pham,P., Sakano,H., Schwartz,J., Southwick,A., Thaveri,A., Toriumi,M., Vaysberg,M., Yu,G., Davis,R., Federspiel,N., Theologis,A. and Ecker,J.
title: Direct Submission
journal: Submitted (19-JAN-2000) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th and Hamilton Walk, Philadelphia, PA 19104-6018, USA
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 5
Key: source
Value: thale cress
Key: taxonomy
Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Arabidopsis']
Features
type: source
location: [0:86436](+)
qualifiers:
Key: chromosome, Value: ['1']
Key: clone, Value: ['T25K16']
Key: db_xref, Value: ['taxon:3702']
Key: organism, Value: ['Arabidopsis thaliana']
type: CDS
location: join{[3461:3615](+), [3697:3978](+), [4076:4307](+), [4407:4797](+), [4875:5028](+), [5140:5332](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715633']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['containing similarity to NAM-like proteins gi|3695378']
Key: product, Value: ['T25K16.1']
Key: protein_id, Value: ['AAF26460.1']
Key: translation, Value: ['MEDQVGFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENNKGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDLLPEHQKLCNVTLFRFSSYFRLSLLSPMFYTDELMCLPPEILQRTYVICRLEYKGDDADILSAYAIDPTPAFVPNMTSSAGSVVNQSRQRNSGSYNTYSEYDSANHGQQFNENSNIMQQQPLQGSFNPLLEYDFANHGGQWLSDYIDLQQQVPYLAPYENESEMIWKHVIEENFEFLVDERTSMQQHYSDHRPKKPVSGVLPDDSSDTETGSMIFEDTSSSTDSVGSSDEPGHTRIDDIPSLNIIEPLHNYKAQEQPKQQSKEKVISSQKSECEWKMAEDSIKIPPSTNTVKQSWIVLENAQWNYLKNMIIGVLLFISVISWIILVG']
type: CDS
location: join{[8272:8368](-), [8086:8166](-), [7915:7998](-), [7463:7603](-), [7265:7351](-), [6616:6953](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715650']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['hypothetical protein']
Key: product, Value: ['T25K16.2']
Key: protein_id, Value: ['AAF26477.1']
Key: translation, Value: ['MAASEHRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMVCFNHFLSLFGPKVYRHVLYNAINPATVNIQVKNYFNSTSRCVVGEIHRQTYLKSPELIIDRSLLLRKSDEESSFSDSPVLLSIKVLIGVLSANAAFIISFAIATKGLLNEVSRESLLLQVWEFPMSVIFFVDILLLTSNSMALKGQTFKMFSMQIVFCCCYFGISQCKFVFKPVMTESTMTRCIAVCLIAHLIRFLVGQIFEPTIFLIQIGSLLQYMSYFFRIV']
type: CDS
location: [11565:12642](-)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715649']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative RAP2.8 protein gi|3695373']
Key: product, Value: ['T25K16.3']
Key: protein_id, Value: ['AAF26476.1']
Key: translation, Value: ['MDLSLAPTTTTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQFGNFGFNFNFPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGSPLDHRNIVGSEPLVIDSVPVVPGRLTPVMLPPLPPPPSTAGKRLRLFGVNMECGNDYNQQEESWLVPRGEIGASSSSSSALRLNLSTDHDDDNDDGDDGDDDQFAKKGKSSLSLNFNP']
type: CDS
location: join{[23220:24174](+), [24243:24357](+), [24411:24664](+), [24742:25137](+), [25225:25445](+), [25526:25711](+), [25782:25905](+), [25993:26478](+), [26563:26730](+), [26813:26983](+), [27073:27235](+), [27319:27415](+), [27504:28133](+), [28313:28507](+), [28591:28782](+), [28861:30013](+), [30111:30518](+), [30603:30781](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715634']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to UFD1 protein emb|CAB10321.1; similar to ESTs gb|H36434, gb|AI996152.1']
Key: product, Value: ['T25K16.4']
Key: protein_id, Value: ['AAF26461.1']
Key: translation, Value: ['MVMEDEPREATIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQVPPNKKHQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQFLKLTSFFLFSSTQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVRIKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERYIKSFKNYILIFVTTGHQISTDMSTCVTCRGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQVDIIVSACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKIYVVQDRLFFYFLHNLRLLRLYKSSSIMLFIRYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS']
type: CDS
location: join{[32248:32372](-), [32132:32161](-), [31983:32049](-), [31789:31897](-), [31634:31700](-), [31340:31515](-), [31222:31304](-), [31083:31126](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715648']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative inorganic pyrophosphatase gi|3510259; similar to ESTs gb|T42316, gb|AI994042.1, gb|AI994013.1, emb|Z29202']
Key: product, Value: ['T25K16.5']
Key: protein_id, Value: ['AAF26475.1']
Key: translation, Value: ['MSEETKDNQRLQRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDCILFLQCSSLFISIDLSTNKKNENKEVAVNDFLPSESAVEAIQYSMDLYAEYILHTLRR']
type: CDS
location: join{[36724:36763](-), [36511:36623](-), [36325:36387](-), [35431:35701](-), [35268:35349](-), [34102:35173](-), [33693:34029](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715647']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative late elongated hypocotyl emb|CAA07004; similar to ESTS gb|AI993521.1, gb|AA650979']
Key: product, Value: ['T25K16.6']
Key: protein_id, Value: ['AAF26474.1']
Key: translation, Value: ['MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKFGKAHSFWFTFQLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKVSGDIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST']
type: CDS
location: join{[40376:40579](-), [39914:40031](-), [39110:39516](-), [38837:38989](-), [38599:38756](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715646']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to Medicago truncatula MtN2 gi|3193308; similar to EST gb|H77065']
Key: product, Value: ['T25K16.7']
Key: protein_id, Value: ['AAF26473.1']
Key: translation, Value: ['MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDNDSKSPV']
type: CDS
location: join{[48637:48868](-), [47776:48554](-), [47447:47684](-), [46074:46313](-), [45718:45847](-), [45342:45656](-), [45149:45261](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715645']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative pyruvate dehydrogenase E1 alpha subunit gi|2454182; similar to ESTs emb|Z48417, gb|AW039459.1, gb|T15146, emb|Z48416, gb|AF066871, gb|T76832, gb|AI996061.1']
Key: product, Value: ['T25K16.8']
Key: protein_id, Value: ['AAF26472.1']
Key: translation, Value: ['MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPSSFLGSTRSLSLRRLNHSNATRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRSQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTVNNMKVAESSSEKVSRRVSRKPTVLLLLQRHLLDTNNV']
type: CDS
location: join{[50584:50656](-), [50120:50333](-), [49985:50039](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715644']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to acidic ribosomal protein p1 gi|2252857; similar to ESTs gb|T42111, gb|AI099979, gb|AA728491']
Key: product, Value: ['T25K16.9']
Key: protein_id, Value: ['AAF26471.1']
Key: translation, Value: ['MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD']
type: CDS
location: join{[51940:52048](+), [52135:52432](+), [52639:52885](+), [53185:53326](+), [53404:54196](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715635']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['hypothetical protein']
Key: product, Value: ['T25K16.10']
Key: protein_id, Value: ['AAF26462.1']
Key: translation, Value: ['MGKKNGSSSWLTAVKRAFRSPTKKDHSNDVEEDEEKKREKRRWFRKPATQESPVKSSGISPPAPQEDSLNVNSKPSPETAPSYATTTPPSNAGKPPSAVVPIATSASKTLAPRRIYYARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELEEERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR']
type: CDS
location: [57093:58680](-)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715643']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative fatty acid elongase 3-ketoacyl-coA synthase 1 gi|4091810; similar to ESTs gb|T42377, gb|N96054, gb|T44368, gb|AI999379.1, emb|Z26005']
Key: product, Value: ['T25K16.11']
Key: protein_id, Value: ['AAF26470.1']
Key: translation, Value: ['MERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLPLSEQLMFLISLVKRKMFKLKVKPYIPDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLWQIAFGSGFKCNSAVWKALRPVSTEEMTGNAWAGSIDQYPVKVVQ']
type: CDS
location: join{[63132:63513](-), [61669:61826](-), [59507:59665](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715642']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['hypothetical protein']
Key: product, Value: ['T25K16.12']
Key: protein_id, Value: ['AAF26469.1']
Key: translation, Value: ['MEKRSDSESVEILGDWDSPPPEERIVMVSVPTSPESDYARSNQPKEIESRVSDKETASASGEVAARRVLPPWMDPSYEWGGGKWKVDGRKNKNKKEKEKEKEEIIPFKEIIEALLGNSGDKVQQDNKVFEVAPSLHVVELRKTGDDTLEFHKVYFRFNLYQPVQLPLILFVVIRFSMLKIIHYHQFTMAHIKEFVCMWDTHLYKEITNLNIWDTLSSTLVLAIWTVNASHE']
type: CDS
location: join{[67025:67214](-), [66536:66599](-), [66379:66451](-), [66151:66259](-), [65963:66044](-), [65808:65862](-), [65434:65566](-), [65264:65354](-), [65032:65158](-), [64811:64919](-), [64602:64719](-), [64452:64509](-), [64271:64358](-), [64099:64177](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715641']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to wpk4 protein kinase dbj|BAA34675; similar to ESTs dbj|AB015122, gb|AI997157.1']
Key: product, Value: ['T25K16.13']
Key: protein_id, Value: ['AAF26468.1']
Key: translation, Value: ['MSGSRRKATPASRTRVGNYEMGRTLGEGSFAKVKYAKNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIAQQGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSAFSRQVREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFDEPNLMTLYKRVRICKAEFSCPPWFSQGAKRVIKRILEPNPITRISIAELLEDEWFKKGYKPPSFDQDDEDITIDDVDAAFSNSKECLVTEKKEKPVSMNAFELISSSSEFSLENLFEKQAQLVKKETRFTSQRSASEIMSKMEETAKPLGFNVRKDNYKIKMKGDKSGRKGQLSVATEVFEVAPSLHVVELRKTGGDTLEFHKVCDSFYKNFSSGLKDVVWNTDAAAEEQKQ']
type: CDS
location: join{[71643:71700](-), [70742:71357](-), [70533:70670](-), [69830:69987](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715640']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to ataxia-telangiectasia group D protein pir|A49618']
Key: product, Value: ['T25K16.14']
Key: protein_id, Value: ['AAF26467.1']
Key: translation, Value: ['MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHENLHQLQELVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMVRIIILIWLRSRLTSSSSSQRSEIKMERERNAGVMKKMSPTGTIQRLEFVGWYL']
type: CDS
location: join{[72284:72371](+), [72788:72865](+), [72988:73097](+), [73189:73442](+), [73523:73585](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715636']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to SYT gi|2252866; similar to ESTs emb|F14390, gb|H36066, emb|F14391']
Key: product, Value: ['T25K16.15']
Key: protein_id, Value: ['AAF26463.1']
Key: translation, Value: ['MQQQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPETGLGGNVGLRGGKQDGADGQGKDDGK']
type: CDS
location: join{[74035:74145](-), [73806:73990](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715639']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['similar to stress-induced protein OZI1 precursor pir|S59544; similar to EST gb|AI995719.1']
Key: product, Value: ['T25K16.16']
Key: protein_id, Value: ['AAF26466.1']
Key: translation, Value: ['MASGGKAKYIIGALIGSFGISYIFDKVISDNKIFGGKDDLNGYLLVKISGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVKTRPE']
type: CDS
location: join{[75334:76249](+), [76515:76653](+), [76732:76982](+), [77014:77148](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715637']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative reverse transcriptase gb|AAD17395']
Key: product, Value: ['T25K16.17']
Key: protein_id, Value: ['AAF26464.1']
Key: translation, Value: ['MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPSTTAVETTKPQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRDRFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDEHGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSWPSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA']
type: CDS
location: join{[83585:84581](-), [82750:83373](-), [82722:82738](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6715638']
Key: evidence, Value: ['not_experimental']
Key: note, Value: ['putative cytochrome P450 gi|3831440']
Key: product, Value: ['T25K16.18']
Key: protein_id, Value: ['AAF26465.1']
Key: translation, Value: ['MFSLNMRTEIESLWVFALASKFNIYMQQHFASLLVAIAITWFTITIVFWSTPGGPAWGKYFFTRRFISLDYNRKYKNLIPGPRGFPLVGSMSLRSSHVAHQRIASVAEMSNAKRLMAFSLGDTKVVVTCHPAVAKEILNSSVFADRPVDETAYGLMFNRAMGFAPNGTYWRTLRRLGSNHLFNPKQIKQSEDQRRVIATQMVNAFARNPKSACAVRDLLKTASLCNMMGLVFGREYELESNNNLESECLKGLVEEGYDLLGTLNWTDHLPWLAGLDFQQIRFRCSQLVPKVNLLLSRIIHEQRAATGNFLDMLLSLQGSEKLSESDMVAVLWEMIFRGTDTVAVLVEWVLARIVMHPKVQLTVHDELDRVVGRSRTVDESDLPSLTYLTAMIKEVLRLHPPGPLLSWARLSITDTSVDGYHVPAGTTAMVNMWAIARDPHVWEDPLEFKPERFVAKEGEAEFSVFGSDLRLAPFGSGKRVCPGKNLGLTTVSFWVATLLHEFEWLPSVEANPPDLSEVLRLSCEMACPLIVNVSSRRKIIAWMF']
DB cross refs []
***Record from protein_refseq.gb with the FeatureParser
Seq: Seq('MNNRWILHAAFLLCFSTTALSINYKQLQLQERTNIRKCQELLEQLNGKINLTYR...FQN', IUPACProtein())
Id: NP_034640.1
Name: NP_034640
Description interferon beta, fibroblast [Mus musculus].
Annotations***
Key: accessions
Value: ['NP_034640']
Key: comment
Value: PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from K00020.1.
Key: data_file_division
Value: ROD
Key: date
Value: 01-NOV-2000
Key: db_source
Value: REFSEQ: accession NM_010510.1
Key: gi
Value: 6754304
Key: keywords
Value: ['']
Key: organism
Value: Mus musculus
Key: pid
Value: g6754304
References*
location: [0:182]
authors: Higashi,Y., Sokawa,Y., Watanabe,Y., Kawade,Y., Ohno,S., Takaoka,C. and Taniguchi,T.
title: structure and expression of a cloned cdna for mouse interferon-beta
journal: J. Biol. Chem. 258, 9522-9529 (1983)
medline id: 83265757
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: house mouse
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Rodentia', 'Sciurognathi', 'Muridae', 'Murinae', 'Mus']
Features
type: source
location: [0:182]
qualifiers:
Key: chromosome, Value: ['4']
Key: db_xref, Value: ['taxon:10090']
Key: map, Value: ['4 42.6 cM']
Key: organism, Value: ['Mus musculus']
type: Protein
location: [0:182]
qualifiers:
Key: product, Value: ['interferon beta, fibroblast']
type: sig_peptide
location: [0:21]
qualifiers:
type: Region
location: [0:182]
qualifiers:
Key: db_xref, Value: ['CDD:pfam00143']
Key: note, Value: ['interferon']
Key: region_name, Value: ['Interferon alpha/beta domain']
type: mat_peptide
location: [21:182]
qualifiers:
Key: product, Value: ['ifn-beta']
type: Region
location: [55:170]
qualifiers:
Key: db_xref, Value: ['CDD:IFabd']
Key: note, Value: ['IFabd']
Key: region_name, Value: ['Interferon alpha, beta and delta.']
type: CDS
location: [0:182]
qualifiers:
Key: coded_by, Value: ['NM_010510.1:21..569']
Key: db_xref, Value: ['LocusID:15977', 'MGD:MGI:107657']
Key: gene, Value: ['Ifnb']
DB cross refs []
***Record from extra_keywords.gb with the FeatureParser
Seq: Seq('TCCAGGGGATTCACGCGCAATATGTTTCCCTCGCTCGTCTGCAGGGTGTGGGAA...TTG', IUPACAmbiguousDNA())
Id: AL138972.1
Name: DMBR25B3
Description Drosophila melanogaster BAC clone BACR25B3.
Annotations***
Key: accessions
Value: ['AL138972']
Key: comment
Value: Sequence submitted by Takis Benos, EMBL Outstation - The EBI,
Hinxton, Cambridge, CB10 1SD, U.K.
E-mail: benos@ebi.ac.uk on behalf of the European Drosophila Genome
Sequencing Consortium. For further information see the European
Drosophila Genome Sequencing Consortium's web site:
http://edgp.ebi.ac.uk/.
The syntax for the representation of annotation used in this record
is documented at:
ftp://ftp.ebi.ac.uk/pub/databases/edgp/sequence_annotation.README
Coding sequences are predicted from computer analysis, using both
gene and CDS prediction programs and matches to other sequences.
These predictions and matches have been evaluated by the annotators
and may have been refined by hand (in which case a Genefinder
prediction will have no score. The annotators have also used their
judgement on what matches to represent in this record. A far more
complete annotation record is available from FlyBase
(http://flybase.bio.indiana.edu/) through the FlyBase Annotation
Object linked by the db_xref qualifier in the Feature Table.
IMPORTANT: This sequence is NOT necessarily the entire insert of
clone BACR25B3. It may be shorter, since we are minimising the
overlap between clones to 100 bases, by trimming them. Sequence in
absolute orientation with respect to chromosome Clone=BACR25B3;
Contig ID=1; Length=154329; Status=Finished.
Key: data_file_division
Value: INV
Key: date
Value: 07-FEB-2000
Key: gi
Value: 6946668
Key: keywords
Value: ['']
Key: organism
Value: Drosophila melanogaster
References*
location: [0:154329]
authors: Murphy,L., Harris,D. and Barrell,B.
title: Sequencing the distal X chromosome of Drosophila melanogaster
journal: Unpublished
medline id:
pubmed id:
comment: Sanger Centre, Wellcome Trust Genome Campus, Hinxton Hall, Hinxton, Cambridge CB10 1SA, U.K.
location: [0:154329]
authors: Benos,P.
title: Direct Submission
journal: Submitted (06-FEB-2000) European Drosophila Genome Sequencing Consortium
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: fruit fly
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Arthropoda', 'Tracheata', 'Hexapoda', 'Insecta', 'Pterygota', 'Neoptera', 'Endopterygota', 'Diptera', 'Brachycera', 'Muscomorpha', 'Ephydroidea', 'Drosophilidae', 'Drosophila']
Features
type: source
location: [0:154329](+)
qualifiers:
Key: clone, Value: ['BAC BACR25B3']
Key: db_xref, Value: ['taxon:7227']
Key: organism, Value: ['Drosophila melanogaster']
type: gene
location: [22147:27773](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.11']
Key: note, Value: ['']
type: CDS
location: join{[27622:27773](-), [26676:27009](-), [25023:25178](-), [24615:24888](-), [23629:24555](-), [22859:23560](-), [22374:22791](-), [22147:22299](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946669']
Key: gene, Value: ['EG:BACR25B3.11']
Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''105.71''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:24292..24549, target:SWISS-PROT::P98160:3713..3628, score:''201.00''), (query:24016..24291, target:SWISS-PROT::P98160:3815..3724, score:''139.00''), (query:23857..24006, target:SWISS-PROT::P98160:3866..3817, score:''99.00''), (query:24052..24327, target:SWISS-PROT::P98160:4059..3968, score:''143.00''), (query:24046..24312, target:SWISS-PROT::P98160:4341..4253, score:''116.00''), (query:23806..23901, target:SWISS-PROT::P98160:4177..4146, score:''76.00''), (query:23203..23382, target:SWISS-PROT::P98160:4062..4003, score:''116.00''), (query:22523..22777, target:SWISS-PROT::P98160:4288..4204, score:''112.00''), (query:22235..22300, target:SWISS-PROT::P98160:4358..4337, score:''64.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM03359.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03359 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:25024..25235, target:EMBL::AA801707:438..227, score:''1024.00''), (query:24851..24898, target:EMBL::AA801707:476..429, score:''204.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD08615.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08615 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:24629..24727, target:EMBL::AA264808:99..1, score:''495.00''), (query:24417..24566, target:EMBL::AA264808:250..101, score:''687.00''), (query:24048..24420, target:EMBL::AA264808:618..246, score:''1847.00''), (query:23986..24036, target:EMBL::AA264808:678..628, score:''237.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''HL02745.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02745 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23944..24045, target:EMBL::AA697546:103..2, score:''510.00''), (query:23630..23943, target:EMBL::AA697546:416..103, score:''1570.00''), (query:23419..23561, target:EMBL::AA697546:558..416, score:''715.00''), (query:23306..23417, target:EMBL::AA697546:670..559, score:''524.00''), (query:23280..23316, target:EMBL::AA697546:695..659, score:''167.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GM08137.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08137 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23235..23278, target:EMBL::AA696682:44..1, score:''139.00''), (query:22986..23251, target:EMBL::AA696682:294..29, score:''1321.00'')), method:''blastn'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72284.1']
Key: translation, Value: ['MACNCNQSMIYQSNERRDYNCPGAPQYPYNRFKGGVSLKDTPCMVLYICADFKSSKLSSAKPIISGPATTRAPAISYVCQPNDFKCVSHPHTCVRANMVCDGIYDCTDHSDEFNCIAGKGSGKSESNSGSGSFKRWKKSPEQGRRSLAKAVKNRKLRKRSFAKSRDYSLKLDDQSSNLRAGESTDVECYSSDDTYTDVVWERSDGAPLSNNVRQVGNRLVISNVSPSDAGNYVCKCKTDEGDLYTTSYKLEVEDQPHELKSSKIVYAKVGANADLQCGADESRQPTYRWSRQYGQLQAGRSLMNEKLSLDSVQANDAGTYICTAQYADGETADFPNILVVTGAIPQFRQEPRSYMSFPTLPNSSFKFNFELTFRPENGDGLLLFNGQTRGSGDYIALSLKDRYAEFRFDFGGKPMLVRAEEPLALNEWHTVRVSRFKRDGYIQVDEQHPVAFPTLQQIPQLDLIEDLYIGGVPNWELLPADAVSQQVGFVGCISRLTLQGRTVELIREAKYKEGITDCRPCAQGPCQNKGVCLESQTEQAYTCICQPGWTGRDCAIEGTQCTPGVCGAGRCENTENDMECLCPLNRSGDRCQYNEILNEHSLNFKGNSFAAYGTPKVTKVNITLSVRPASLEDSVILYTAESTLPSGDYLALVLRGGHAELLINTAARLDPVVVRSAEPLPLNRWTRIEIRRRLGEGILRVGDGPERKAKAPGSDRILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGCISRLYNFQKPVNLLADIKDAANIQSCGETNMIGGDEDSDNEPPVPPPTPDVHENELQPYAMAPCASDPCENGGSCSEQEDVAVCSCPFGFSGKHCQEHLQLGFNASFRGDGYVELNRSHFQPALEQSYTSMGIVFTTNKPNGLLFWWGQEAGEEYTGQDFIAAAVVDGYVEYSMRLDGEEAVIRNSDIRVDNGERHIVIAKRDENTAILEVDRMLHSGETRPTSKKSMKLPGNVFVGGAPDLEVFTGFRYKHNLNGCIVVVEGETVGQINLSSAAVNGVNANVCPA']
type: gene
location: [29925:33978](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.10']
type: CDS
location: join{[33816:33978](-), [33532:33713](-), [32685:33289](-), [32323:32634](-), [31658:31836](-), [31196:31591](-), [30616:31076](-), [30269:30519](-), [29925:30108](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946670']
Key: gene, Value: ['EG:BACR25B3.10']
Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''98.50''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:33540..33716, target:SWISS-PROT::P98160:2716..2658, score:''113.00''), (query:32859..32963, target:SWISS-PROT::P98160:3341..3307, score:''63.00''), (query:33150..33215, target:SWISS-PROT::P98160:3530..3509, score:''73.00''), (query:32973..33089, target:SWISS-PROT::P98160:3588..3550, score:''71.00''), (query:32358..32567, target:SWISS-PROT::P98160:3650..3581, score:''107.00''), (query:31222..31323, target:SWISS-PROT::P98160:2620..2587, score:''80.00''), (query:31489..31572, target:SWISS-PROT::P98160:3387..3360, score:''72.00''), (query:31495..31593, target:SWISS-PROT::P98160:3575..3543, score:''60.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM02481.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02481 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:30008..30036, target:EMBL::AA695253:29..1, score:''145.00''), (query:29549..30004, target:EMBL::AA695253:487..32, score:''2262.00'')), method:''blastn'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72285.1']
Key: translation, Value: ['MFLATLDTNDPTDIGTEDPVLTQIIVSIQKPEITIVPVGGSMTLSCSGRMRWSNSPVIVNWYKENSRLPENVEVQGGNLYLYDLQVSDSGVYICQAVNNETASVFKDTVSITITKKDQLSPAEIVNLPSHVTFEEYVNNEIICEVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSPRKSDEGRYRCQAENDQNRDEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTSVASLRYDWSHNGRSLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNIDRREEQPFGVLMRMMILTDSLINHSNKPIIESLEQNILIIQGEDYSITCEASGSPYPSIKWAKVHDFMPENVHISGNVLTIYGARFENRGVYSCVAENDHGSDLSSTSIDIEPRERPSVKIVSAPLQTFSVGAPASLYCTVEGIPDPTVEWVRVDGQPLSPRHKIQSPGYMVIDDIQLEDSGDYECRAKNIVGEATGVATITVQEPTLVQIIPDNRDLRLTEGDELSLTCVGSGVPNPEVEWVNEMALKRDLYSPPSNTAILKIYRVTKADAGIYTCHGKNEAGSDEAHVRVEVQERRGDIGGVDDDSDRDPINYNPPQQQNPGIHQPGSNQLLATDIGDNVTLTCDMFQPLNTRWERVDGAPLPRNAYTIKNRLEIVRVEQQNLGQYRCNGIGRDGNVKTYFVKELVLMPLPRIRFYPNIPLTVEAGQNLDVHCQVENVRPEDVHWSTDNNRPLPSSVRIVGSVLRFVSITQAAAGEYRCSAFNQYGNRSQIARVAVKKPADFHQVPQSQLQRHREGENIQLQCTVTDQYGVRAQDNVEFNWFRDDRRPLPNNARTDSQILVLTNLRPEDAGRYICNSYDVDRGQQLPEVSIDLQVLSE']
type: gene
location: [36118:56153](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.1']
type: CDS
location: join{[56030:56153](-), [52848:52966](-), [50826:50937](-), [50318:50441](-), [49970:50102](-), [49762:49876](-), [49436:49562](-), [48410:48878](-), [47682:47831](-), [47221:47315](-), [46517:46688](-), [45975:46125](-), [45660:45793](-), [45147:45233](-), [44811:44928](-), [44240:44438](-), [43603:43837](-), [42750:42876](-), [42187:42415](-), [41854:42085](-), [41545:41620](-), [40680:40814](-), [40518:40612](-), [40344:40434](-), [39655:40042](-), [37280:39517](-), [36118:37213](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946671']
Key: gene, Value: ['EG:BACR25B3.1']
Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN PRECURSOR (LRP)'', species:''Caenorhabditis elegans'', ranges:(query:50831..50941, target:SWISS-PROT::Q04833:1221..1185, score:''95.00''), (query:50840..51025, target:SWISS-PROT::Q04833:2865..2804, score:''102.00''), (query:50828..50935, target:SWISS-PROT::Q04833:3788..3753, score:''119.00''), (query:50323..50394, target:SWISS-PROT::Q04833:3706..3683, score:''77.00''), (query:50326..50433, target:SWISS-PROT::Q04833:1263..1228, score:''120.00''), (query:49948..50079, target:SWISS-PROT::Q04833:2917..2874, score:''88.00''), (query:49432..49587, target:SWISS-PROT::Q04833:4085..4034, score:''102.00''), (query:49429..49560, target:SWISS-PROT::Q04833:3915..3872, score:''97.00''), (query:48622..48720, target:SWISS-PROT::Q04833:1302..1270, score:''99.00''), (query:47698..47799, target:SWISS-PROT::Q04833:3996..3963, score:''88.00''), (query:47686..47775, target:SWISS-PROT::Q04833:3835..3806, score:''59.00''), (query:47692..47787, target:SWISS-PROT::Q04833:4041..4010, score:''83.00''), (query:47229..47315, target:SWISS-PROT::Q04833:3742..3714, score:''88.00''), (query:47220..47312, target:SWISS-PROT::Q04833:3829..3799, score:''67.00''), (query:47232..47318, target:SWISS-PROT::Q04833:3866..3838, score:''78.00''), (query:46552..46656, target:SWISS-PROT::Q04833:1344..1310, score:''95.00''), (query:46543..46650, target:SWISS-PROT::Q04833:3951..3916, score:''98.00''), (query:45983..46129, target:SWISS-PROT::Q04833:2870..2822, score:''82.00''), (query:45971..46096, target:SWISS-PROT::Q04833:4089..4048, score:''82.00''), (query:45678..45764, target:SWISS-PROT::Q04833:3666..3638, score:''80.00''), (query:45128..45238, target:SWISS-PROT::Q04833:94..58, score:''100.00''), (query:45158..45268, target:SWISS-PROT::Q04833:3990..3954, score:''80.00''), (query:44263..44379, target:SWISS-PROT::Q04833:85..47, score:''77.00''), (query:44251..44367, target:SWISS-PROT::Q04833:3995..3957, score:''100.00''), (query:43605..43688, target:SWISS-PROT::Q04833:2994..2967, score:''84.00''), (query:42764..42877, target:SWISS-PROT::Q04833:2951..2914, score:''77.00''), (query:42180..42377, target:SWISS-PROT::Q04833:260..195, score:''148.00''), (query:42234..42419, target:SWISS-PROT::Q04833:3199..3138, score:''106.00''), (query:39807..40013, target:SWISS-PROT::Q04833:2901..2833, score:''167.00''), (query:39645..39857, target:SWISS-PROT::Q04833:3138..3068, score:''151.00''), (query:39846..40046, target:SWISS-PROT::Q04833:3241..3175, score:''132.00''), (query:39654..39866, target:SWISS-PROT::Q04833:3913..3843, score:''201.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2 PRECURSOR (MEGALIN) (GLYCOPROTEIN 330)'', species:''Homo sapiens (Human)'', ranges:(query:50834..50935, target:SWISS-PROT::P98164:2733..2700, score:''99.00''), (query:50840..50947, target:SWISS-PROT::P98164:3063..3028, score:''94.00''), (query:50831..50926, target:SWISS-PROT::P98164:3918..3887, score:''102.00''), (query:50326..50433, target:SWISS-PROT::P98164:1222..1187, score:''107.00''), (query:50302..50394, target:SWISS-PROT::P98164:3762..3732, score:''91.00''), (query:49773..49904, target:SWISS-PROT::P98164:2939..2896, score:''90.00''), (query:49438..49578, target:SWISS-PROT::P98164:217..171, score:''116.00''), (query:49429..49545, target:SWISS-PROT::P98164:3796..3758, score:''108.00''), (query:48622..48720, target:SWISS-PROT::P98164:3544..3512, score:''94.00''), (query:48595..48708, target:SWISS-PROT::P98164:3720..3683, score:''86.00''), (query:47701..47814, target:SWISS-PROT::P98164:2817..2780, score:''90.00''), (query:47692..47799, target:SWISS-PROT::P98164:3674..3639, score:''60.00''), (query:47217..47366, target:SWISS-PROT::P98164:3716..3667, score:''96.00''), (query:46543..46647, target:SWISS-PROT::P98164:1101..1067, score:''107.00''), (query:46552..46656, target:SWISS-PROT::P98164:3873..3839, score:''84.00''), (query:45989..46126, target:SWISS-PROT::P98164:3832..3787, score:''98.00''), (query:45149..45274, target:SWISS-PROT::P98164:2775..2734, score:''99.00''), (query:44780..44893, target:SWISS-PROT::P98164:268..231, score:''76.00''), (query:44813..44905, target:SWISS-PROT::P98164:1223..1193, score:''73.00''), (query:44251..44361, target:SWISS-PROT::P98164:3630..3594, score:''119.00''), (query:43602..43700, target:SWISS-PROT::P98164:179..147, score:''97.00''), (query:43674..43781, target:SWISS-PROT::P98164:191..156, score:''90.00''), (query:43584..43685, target:SWISS-PROT::P98164:1107..1074, score:''89.00''), (query:42758..42865, target:SWISS-PROT::P98164:1264..1229, score:''79.00''), (query:42204..42413, target:SWISS-PROT::P98164:2810..2741, score:''136.00''), (query:42189..42377, target:SWISS-PROT::P98164:3027..2965, score:''125.00''), (query:42186..42293, target:SWISS-PROT::P98164:3110..3075, score:''109.00''), (query:42198..42389, target:SWISS-PROT::P98164:3584..3521, score:''137.00''), (query:42309..42422, target:SWISS-PROT::P98164:3793..3756, score:''95.00''), (query:39654..39791, target:SWISS-PROT::P98164:63..18, score:''132.00''), (query:39786..40049, target:SWISS-PROT::P98164:1183..1096, score:''230.00''), (query:39657..39890, target:SWISS-PROT::P98164:3109..3032, score:''200.00''), (query:39780..39983, target:SWISS-PROT::P98164:3756..3689, score:''194.00''), (query:39618..39761, target:SWISS-PROT::P98164:3845..3798, score:''105.00''), (query:39651..39779, target:SWISS-PROT::P98164:3964..3922, score:''128.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM06086.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06086 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:50852..51290, target:EMBL::AA802674:672..234, score:''2195.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''SD04592.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04592 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:37280..37708, target:EMBL::AI532939:429..1, score:''2136.00''), (query:37097..37217, target:EMBL::AI532939:545..425, score:''569.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH03622.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03622 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:36446..37075, target:EMBL::AI063674:1..630, score:''3150.00'')), method:''blastn'', version:''1.4.9''); EST embl|AA802674|AA802674 comes from the 5' UTR"]
Key: protein_id, Value: ['CAB72286.1']
Key: translation, Value: ['MLLLQLLLQLLLLGKLLLGKTPPTVFGFRLLFAAFRFPLSLHFPHRMHDHFFVRGDTHSCGWKNSTTFTIRISAIYRYLNQCQANEFRCNNGDCIDARKRCNNVSDCSEGEDENEECPAACSGMEYQCRDGTRCISVSQQCDGHSDCSDGDDEEHCDGIVPKLRYTCPKGKFTCRDLSCISIVHRCDGRADCPNDRSDEEGCPCLYDKWQCDDGTCIAKELLCNGNIDCPEDISDERYCEGGYDSEECRFDEFHCGTGECIPMRQVCDNIYDCNDYSDEVNCVEGEEEDRVGIPIGHQPWRPASKHDDWLHEMDTSEYQVYQPSNVYEKANSQNPCASNQFRCTTSNVCIPLHLRCDGFYHCNDMSDEKSCEQYQRHTTTRRPLTLATPTSRITTQGPGLLERRNTTTATEASRWPWATKTTTIATTTSNPITTVGVANSPPQTCLENIEFACHNRDCISIESVCDGIPDCGRNEDEDDALCKCSGDKYKCQRGGGCIPKSQVCDGKPQCHDRSDESACHLHGRLNKTRLGVKCLESQYQCGDGSCISGYKRCNGIHDCADASDEYNCIYDYEDTYDTDPNNNPLNECDILEFECDYSQCLPLEKKCDGYADCEDMSDELECQSYTDHCLESEFECDSYCLPRDQLCNGIPNCQDGSDERNCTFCREDAYLCNTGECVADNQRCNGIADCADGSDERHCARIYCPPNKLACNGTCVSRRIKCDGIRDCLDGYDEMYCPETNNHYPTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSDEELSVCFGTATTRLKPSDCSPEQFYCDESCYNRSVRCNGHVDCSDGSDEVGCSLPCPQHQCPSGRCYTESERCDRHRHCEDGSDEANCTAILCKDNEFLCFDRQFCINATQQCDGYYDCRDFSDEQNCIGCYANQFRCNNGDCVSGSAPCNGYSECSDHSDELNCGGTQECLPNQFRCNSGQCVSSSVRCNGRTDCQDSSDEQNCGHRHTEVSQGLETTGVFTTSTTSTTAMTPLRIICPPTSFKCENGPCISLGLKCNGRVDCPYDGSDEADCGQISNDIDPADSNDRRPNQLNLKTYPDSQIIKESREVIFRCRDEGPARAKVKWSRPGGRPLPPGFTDRNGRLEIPNIRVEDAGTYVCEAVGYASYIPGQQVTVNLNVERSWGENKYEEIRSNRIRYGTVPHIDLEFFGLDNDVGSRPESACTEYQATCMNGECIDKSSICDGNPDCSDASDEQSCSLGLKCQPNQFMCSNSKCVDRTWRCDGENDCGDNSDETSCDPEPSGAPCRYNEFQCRSGHCIPKSFQCDNVPDCTDGTDEVGCMAPLPIRPPPQSVSLLEYEVLELTCVATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLRCPDMRPQDSGAYSCEIINTRGTHFVNPDTIVTVRPVRTDVCEAGFFNMLARKAEECVQCFCFGVAKACDSANLFTYAIHPPILSHRVVSVELSPLRQIVINEAAPGQDLLTLLHGVQFRATNVHFSGRETPYLALPADYMGNQLKSYGGNLRYEVNYRGSGRPVNGPDVIITGNRFTLTYRVRTQPGQNNRVSIPFVPGGWQKPDGRKASREEIMMILANVDNILIRLGYLDSTAREVDLINIALDSAGTADKGLGSASLVEKCQCPPGYVGDSCESCASGYVRQPGGPWLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGSNNFASGCQQSPDGDVVCRCNEGYTGRRCEQCAAGYQGNPLAAGGICRRIPDTSCNVDGTYSVHSNGTCQCKDSVIGEQCDTCKSKSFHLNSFTYTGCIECFCSGVGLDCDSSTWYRDQVTSTFGRSRVDHGFVLVTNYMQPTPDTVPVSMAAEPNALSFIGSADQSGNTLYWSLPAAFLGNKLSSYGGKLTYTLSYSPLPNGIMSRNSAPDVVIKSGEDLRLIHYRKSQVVPSVANTYSVEIKESAWQRGDEVVANREHVLMALSDITAIYIKATYTTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPEGYLGLSCEQCAPGYARDPEGGIYLGLCRPCECNGHSKYCNSDTGDCEECSDNTEGPSCERCAAGYVGDATRGTIYDCQPDEGYPIPSPPAPGNQTLECTAYCQIEGIYDCRGNECLCKRNVIGDQCDQCRPGTYGLSAQNQDGCKECYCSGLASQCRSAALYRQLIPVDFILNAPLITDESGAVQDTENLIPDISRNMYTYTHTSYLPKYWSLRGSVLGNQLFSYGGRLSYSLIVESYGNYERGHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTRQDRESARPASRSDFMTVLSDLQHILIRATPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPSGYVGTSCESCAPLHYRDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKGDRCREIGE']
type: gene
location: [70719:75241](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.2']
type: CDS
location: join{[75216:75241](-), [73085:73559](-), [72838:73016](-), [72604:72768](-), [71423:71621](-), [70719:70988](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946672']
Key: gene, Value: ['EG:BACR25B3.2']
Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''41.82''); /prediction=(method:''genscan'', version:''1.0'')"]
Key: protein_id, Value: ['CAB72287.1']
Key: translation, Value: ['MANSKVVAHDESLQGINDSEWQLMGDDIDDGLLDDVDETLKPMETKSEEEDLPTGNWFSQSVHRVRRSINRLFGSDDNQERGRRQQRERSQRNRDAINRQKELRRRQKEDHNRWKQMRMERQLEKQRLVKRTNHVVFNRATDPRKRASDLYDENEASGYHEEDTTLYRTYFVVNEPYDNEYRDRESVQFQNLQKLLDDDLRNFFHSNYEGNDDEEQEIRSTLERVEPTNDNFKIRVQLRIELPTSVNDFGSKLQQQLNVYNRIENLSAATDGVFSFTESSDIEEEAIDVTLPQEEVEGSGSDDSSCRGDATFTCPRSGKTICDEMRCDREIQCPDGEDEEYCNYPNVCTEDQFKCDDKCLELKKRCDGSIDCLDQTDEAGCINAPEPEPEPEPEPEPEPESEPEAEPEPEPEPEPESEPEQEPEPQVPEANGKFY']
type: gene
location: [121866:127124](+)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.3']
type: CDS
location: join{[121866:122046](+), [122173:122630](+), [123671:123823](+), [124062:124320](+), [124391:124688](+), [124754:125018](+), [125093:125254](+), [125316:125576](+), [126792:127124](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946673']
Key: gene, Value: ['EG:BACR25B3.3']
Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0'', score:''174.91''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''PROBABLE G PROTEIN-COUPLED RECEPTOR C13B9.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:123671..123775, target:SWISS-PROT::Q09460:107..141, score:''80.00''), (query:123743..123829, target:SWISS-PROT::Q09460:235..263, score:''72.00''), (query:124072..124332, target:SWISS-PROT::Q09460:265..351, score:''161.00''), (query:124392..124691, target:SWISS-PROT::Q09460:349..448, score:''206.00''), (query:124755..124958, target:SWISS-PROT::Q09460:448..515, score:''123.00''), (query:124764..125027, target:SWISS-PROT::Q09460:454..541, score:''108.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''CALCITONIN RECEPTOR PRECURSOR (CT-R)'', species:''Sus scrofa (Pig)'', ranges:(query:124165..124236, target:SWISS-PROT::P25117:191..214, score:''54.00''), (query:124392..124580, target:SWISS-PROT::P25117:233..295, score:''118.00''), (query:124725..124886, target:SWISS-PROT::P25117:318..371, score:''127.00'')), method:''blastx'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72288.1']
Key: translation, Value: ['MGAGNRKSETKTKTEAEIEIEMERDQFSIAANACMSMGPMLISKDKAPCSGGRVRHADSLHIYYAVDGKMTLLSNILDCGGCISAQRFTRLLRQSGSSGPSPSAPTAGTFESKSMLEPTSSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPDSDTEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTEFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLNGRKPSSASIVMIHEPQQRQRLMPRLQNKAREKGKDRVEKTDAEAEPDPTISHIHSKEAGSARSRTRGSKWIMGICFRGQMCDAGLAKDAANIHDVANAADVDACSGSNNNYHNINNNNGSQNNNSIHCNHRDDDKVKGESQSDFKEPSNTNAESLVHLALFTAHTSNTQNNTHRNTIFTPIRRRNCS']
type: gene
location: [128488:129414](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.4']
type: CDS
location: join{[129373:129414](-), [129195:129313](-), [128776:129140](-), [128488:128715](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946674']
Key: gene, Value: ['EG:BACR25B3.4']
Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''61.35''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''VACUOLAR PROTON-ATPASE SUBUNIT D'', species:''Oryctolagus cuniculus (Rabbit)'', ranges:(query:129190..129324, target:SPTREMBL::O97755:55..11, score:''130.00''), (query:128778..129176, target:SPTREMBL::O97755:174..42, score:''472.00''), (query:128546..128716, target:SPTREMBL::O97755:231..175, score:''169.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''VACUOLAR ATP SYNTHASE SUBUNIT D (EC 3.6.1.34) (V-ATPASE D SUBUNIT) (V- ATPASE 28 KD ACCESSORY PROTEIN)'', species:''Bos taurus (Bovine)'', ranges:(query:129190..129324, target:SWISS-PROT::P39942:55..11, score:''130.00''), (query:128778..129176, target:SWISS-PROT::P39942:174..42, score:''471.00''), (query:128546..128716, target:SWISS-PROT::P39942:231..175, score:''173.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GH28048.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28048 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI517334:233..112, score:''412.00''), (query:128777..129145, target:EMBL::AI517334:597..229, score:''1251.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH07112.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07112 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI108302:223..102, score:''412.00''), (query:128777..129145, target:EMBL::AI108302:587..219, score:''1251.00''), (query:128636..128716, target:EMBL::AI108302:667..587, score:''243.00'')), method:''blastn'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72289.1']
Key: translation, Value: ['MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQVMKEAAFSLAEVKFTTGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFYRLKKIQDKKREARKASDKLRAEQRLLGQMAEAQEVQNILDEDGDEDLLF']
type: gene
location: [132239:132926](+)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.5']
type: CDS
location: [132239:132926](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946675']
Key: gene, Value: ['EG:BACR25B3.5']
Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''48.06''); /prediction=(method:''genscan'', version:''1.0'', score:''132.90''); /match=(desc:''N-ACETYLTRANSFERASE'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:132249..132326, target:SPTREMBL::Q94521:60..85, score:''64.00''), (query:132600..132842, target:SPTREMBL::Q94521:171..251, score:''105.00'')), method:''blastx'', version:''1.4.9''); EST embl|AI063093|AI063093 comes from the 3' UTR"]
Key: protein_id, Value: ['CAB72290.1']
Key: translation, Value: ['MEYKMIAPEHSEQVMEHLRRNFFADEPLNKAAGLCQNGSSCPALEAHCAEAIQHRMSVMAVDAKEKDTLKIVGVVLNGILKPGDTAKALSKLDCNDDADFRKIFDLLHRHNLKHNLFEHFDVDCMFDVRILSVDSCYRGQGIANELVKRSVAVAKKNGFRLLKADATGIFSQKIFRSHGFEVFSEQPYSKYTDENGKVILPVEAPHIKLQQLYKAICADDQDEKKQSL']
type: gene
location: [133491:134407](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.6']
type: CDS
location: join{[134197:134407](-), [133866:134135](-), [133662:133748](-), [133491:133595](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946676']
Key: gene, Value: ['EG:BACR25B3.6']
Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0'', score:''119.22''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LD41675.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD41675 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:134192..134531, target:EMBL::AI515958:340..1, score:''1691.00''), (query:133879..134139, target:EMBL::AI515958:591..331, score:''1305.00'')), method:''blastn'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72291.1']
Key: translation, Value: ['MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGEEGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDERRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEVCKRNVLEKFGYAGHYVVLCGYDMAAQKLFYHNPEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE']
type: gene
location: [135478:136829](+)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.7']
type: CDS
location: join{[135478:135749](+), [135960:136586](+), [136640:136829](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946677']
Key: gene, Value: ['EG:BACR25B3.7']
Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''66.07''); /prediction=(method:''genscan'', version:''1.0'', score:''145.64''); /match=(desc:''HYPOTHETICAL 40.4 KD TRP-ASP REPEATS CONTAINING PROTEIN C14B1.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:135548..135748, target:SWISS-PROT::Q17963:39..105, score:''120.00''), (query:135957..136586, target:SWISS-PROT::Q17963:105..314, score:''899.00''), (query:136641..136823, target:SWISS-PROT::Q17963:315..375, score:''219.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD30385.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD30385 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:135288..135749, target:EMBL::AA950546:102..563, score:''2301.00''), (query:135956..136047, target:EMBL::AA950546:559..650, score:''442.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD10938.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10938 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:136108..136288, target:EMBL::AA392005:776..596, score:''212.00'')), method:''blastn'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72292.1']
Key: translation, Value: ['MVPIGAVHGGHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSDT']
type: gene
location: [145402:147087](+)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.8']
type: CDS
location: join{[145402:146203](+), [146514:147087](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946678']
Key: gene, Value: ['EG:BACR25B3.8']
Key: protein_id, Value: ['CAB72293.1']
Key: translation, Value: ['MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEYGQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTRGDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTGALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLITYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSFDNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVVHSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYMYVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKDVRVLETV']
type: gene
location: [148859:152785](-)
qualifiers:
Key: gene, Value: ['EG:BACR25B3.9']
type: CDS
location: join{[152105:152785](-), [151880:152032](-), [149545:151809](-), [148965:149462](-), [148859:148905](-)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946679']
Key: gene, Value: ['EG:BACR25B3.9']
Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''HYPOTHETICAL 135.8 KD PROTEIN'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:152096..152785, target:SPTREMBL::Q9XZ29:230..1, score:''1147.00''), (query:151882..152043, target:SPTREMBL::Q9XZ29:277..224, score:''250.00''), (query:149546..151816, target:SPTREMBL::Q9XZ29:1032..276, score:''3735.00''), (query:148953..149465, target:SPTREMBL::Q9XZ29:1202..1032, score:''890.00''), (query:148863..148907, target:SPTREMBL::Q9XZ29:1212..1198, score:''76.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD21815.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21815 5prime similar to L19117: Drosophila melanogaster (chromosome X 3A6-8) kinesin-like protein of 3A (klp3A) mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:152482..152787, target:EMBL::AA816942:460..155, score:''1485.00''), (query:152401..152483, target:EMBL::AA816942:540..458, score:''397.00'')), method:''blastn'', version:''1.4.9'')"]
Key: protein_id, Value: ['CAB72294.1']
Key: translation, Value: ['MSSEDPSCVAVALRVRPLVQSELDRGCRIAVERSADGAPQVTVNRNESYTYNYVFDIDDSQKDLFETCVQAKVKKLLNGYNVTILAYGQTGSGKTYTMGTAFNGVLDDHVGVIPRAVHDIFTAIAEMQSEFRFAVTCSFVELYQEQFYDLFSSKTRDKATVDIREVKNRIIMPGLTELVVTSAQQVTDHLIRGSAGRAVAATAMNETSSRSHAIFTLTLVATKLDGKQSVTTSRFNLVDLAGSERCSKTLASGDRFKEGVNINKGLLALGNVINALGSGQAAGYIPYRQSKLTRLLQDSLGGNSITLMIACVSPADYNVAETLSTLRYADRALQIKNKPVVNLDPHAAEVNMLKDVIQKLRVELLSGGKMSSSLISAVGAAGLGAIPCEESLAGSMANAAEIQRLKEQVRTLQDRNRKLQQELHQSLLDLTEKEMRAHIAEQAHDKLRSHVSELKNKLDQREQAQFGNENTNGDNEMRDFSLLVNRVHVELQRTQEELESQGHESRQRLSSRSHTEGGESGGDEVHEMLHSHSEEYTNKQMNFAGELRNINRQLDLKQELHERIMRNFSRLDSDDEDVKLRLCNQKIDDLEAERRDLMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLITQANLLKIRDKEREKIQNLSTEIRTMKESKVKLIRAMRGESEKFRQWKMVREKELTQLKSKDRKMQSEIVRQQTLHSKQRQVLKRKCEEALAANKRLKDALERQASAQAQRHKYKDNGGSAAGSSNANAKTDSWVDRELEIILSLIDAEHSLEQLMEDRAVINNHYHLLQQEKTSDPAEAAEQARILASLEEELEMRNAQISDLQQKVCPTDLDSRIRSLAEGVQSLGESRTVSKQLLKTLVQQRRLQASSLNEQRTTLDELRAQLLDAQQQEDAASKRLRLLQSQHEEQMLAQQRAYEEKVSVLIRTANQRWAEARSPAEDQQRNQILEELLSSREALQQELDKLRAKNKSKSKAVKSEPQDLDDSFQIVDGNETVVLSDVSDDPDWVPSTSKSKRIQSDSRNVISPPEKQDANVTSLGNSSIQSLNSTSATEDGKRCKGCKCRTKCTTKRCGCLSGNNACSETCVCKSNCRNPLNLKDHASQCGDGDGQKDETEDADKSDDDGDDEPQTSKENAVKFVTPEAPGKVVASPKQTLQEPKAAATPLMNSNVVEDINGPKLAKMSGLAFDTPKRKFF']
type: gene
location: join{[153489:154269](+), AL121804.2[40:610](+), AL121804.2[671:1487](+)}
qualifiers:
Key: gene, Value: ['EG:BACR7C10.3']
type: CDS
location: join{[153489:154269](+), AL121804.2[40:610](+), AL121804.2[671:1487](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:6946680']
Key: gene, Value: ['EG:BACR7C10.3']
Key: protein_id, Value: ['CAB72295.1']
Key: translation, Value: ['MEEEAPRFNVLEEAFNGNGNGCANVEATQSAILKVLTRVNRFQMRVRKHIEDNYTEFLPNNTSPDIFLEESGSLNREIHDMLENLGSEGLDALDEANVKMAGNGRQLREILLGLGVSEHVLRIDELFQCVEEAKATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQLQCKSFPTSRCVTLQVSRDQTQLQDIVQALFQEPYNPARLAEFLLDNCIEPVIMRPVMADYSEEADGGTYVRLSLSYATKEPSSAHVRPNYKQVLENLRLLLHTLAGINCSVSRDQHVFGIIGDHVKDKMLKLLVDECLIPAVPESTEEYQTSTLCEDVAQLEQLLVDSFIINPEQDRALGQFVEKYETYYRNRMYRRVLETAREIIQRDLQDMVLVAPNNHSAEVANDPFLFPRCMISKSAQDFVKLMDRILRQPTDKLGDQEADPIAGVISIMLHTYINEVPKVHRKLLESIPQQAVLFHNNCMFFTHWVAQHANKGIESLAALAKTLQATGQQHFRVQVDYQSSILMGIMQEFEFESTHTLGSGPLKLVRQCLRQLELLKNVWANVLPETVYNATFCELINTFVAELIRRVFTLRHISAQMACELSDLIDVVLQRAPTLFREPNEVVQVLSWLKLQQLKAMLNASLMEITELWGDGVGPLTASYKSDEIKHLIRALFQDTDWRAKAITQIV']
DB cross refs []
***Record from one_of.gb with the FeatureParser
Seq: Seq('GAATTCAGATAGAATGTAGACAAGAGGGATGGTGAGGAAAACCTACGGCAAGCA...GGC', IUPACAmbiguousDNA())
Id: U18266.1
Name: HSTMPO1
Description Human thymopoietin (TMPO) gene, exon 1.
Annotations***
Key: accessions
Value: ['U18266']
Key: data_file_division
Value: PRI
Key: date
Value: 01-JUL-1995
Key: gi
Value: 885676
Key: keywords
Value: ['']
Key: organism
Value: Homo sapiens
References*
location: [0:2509]
authors: Harris,C.A., Andryuk,P.J., Cline,S.W., Siekierka,J.J. and Goldstein,G.
title: Structure and mapping of the human thymopoietin (TMPO) gene and relationship of TMPO beta to rat lamin-associated polypeptide 2
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:2509]
authors: Harris,C.A.
title: Direct Submission
journal: Submitted (07-DEC-1994) Crafford A. Harris, Immunobiology Research Institute, Route 22 East, Annandale, NJ 08801-0999, USA
medline id:
pubmed id:
comment:
Key: segment
Value: 1 of 6
Key: sequence_version
Value: 1
Key: source
Value: human
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo']
Features
type: source
location: [0:2509](+)
qualifiers:
Key: chromosome, Value: ['12']
Key: clone, Value: ['P1.516 (DMPC-HFFno.1B-0943F)']
Key: clone_lib, Value: ['DuPont Merck Hum Fibroblast P1 Library no.1 Series B (compressed) (Genome Systems Inc)']
Key: db_xref, Value: ['taxon:9606']
Key: map, Value: ['12q22; 64% (% distance from centromere to telomere)']
Key: organism, Value: ['Homo sapiens']
type: 5'UTR
location: [one-of(1887,1900):2200](+)
qualifiers:
Key: gene, Value: ['TMPO']
type: gene
location: join{[1887:2509](+), U18267.1[0:270](+), U18268.1[0:309](+), U18270.1[0:6905](+), U18269.1[0:128](+), U18271.1[0:3234](+)}
qualifiers:
Key: gene, Value: ['TMPO']
type: exon
location: [one-of(1887,1900):2479](+)
qualifiers:
Key: gene, Value: ['TMPO']
Key: number, Value: ['1']
type: CDS
location: join{[2200:2479](+), U18267.1[119:246](+), U18268.1[129:288](+), U18270.1[4690:4788](+), U18269.1[81:>128](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:885684']
Key: gene, Value: ['TMPO']
Key: product, Value: ['thymopoietin beta']
Key: protein_id, Value: ['AAB60434.1']
Key: translation, Value: ['MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGS']
type: CDS
location: join{[2200:2479](+), U18267.1[119:246](+), U18268.1[129:288](+), U18270.1[38:1558](+)}
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:885683']
Key: gene, Value: ['TMPO']
Key: product, Value: ['thymopoietin alpha']
Key: protein_id, Value: ['AAB60433.1']
Key: translation, Value: ['MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKALEESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQETEFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQSQHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEILGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISEAAQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKINLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH']
DB cross refs []
***Record from NT_019265.gb with the FeatureParser
Seq: UnknownSeq(1250660, alphabet = IUPACAmbiguousDNA(), character = 'N')
Id: NT_019265.6
Name: NT_019265
Description Homo sapiens chromosome 1 working draft sequence segment.
Annotations***
Key: accessions
Value: ['NT_019265']
Key: comment
Value: GENOME ANNOTATION REFSEQ: NCBI contigs are derived from assembled
genomic sequence data. They may include both draft and finished
sequence.
On Oct 16, 2001 this sequence version replaced gi:15294341.
COMPLETENESS: not full length.
Key: contig
Value: join(AL391218.9:105173..108462,gap(100),complement(AL512330.12:1..182490),complement(AL590128.4:9034..81287),gap(100),AL591163.7:85799..94832,gap(100),AL591163.7:94933..113245,gap(100),AL591163.7:42173..44897,complement(AL590128.4:1..6208),AL591163.7:51307..52779,gap(100),AL591163.7:52880..85698,gap(100),AL591163.7:113346..126143,complement(AL159177.12:184729..186047),AL031447.4:1..112158,complement(AL159177.12:1..72671),complement(AL591866.12:23507..86371),AL031848.11:1..142965,AL031847.17:1..166418,AL035406.25:1..161651,complement(AL356261.20:94599..98345),complement(AC026968.3:54432..54579),gap(100),complement(AC062024.2:98529..107911),gap(100),AC062024.2:7713..11594,gap(100),complement(AL356261.20:1..94498),complement(AL356693.18:19988..70853),gap(100),AL356693.18:17351..19887,gap(100),complement(AL356693.18:3037..17250),gap(100),complement(AL356693.18:1..2936),gap(100),AC026968.3:675..2393,gap(100),AC026968.3:1..574,gap(100),AL356261.20:179029..182233)
Key: data_file_division
Value: CON
Key: date
Value: 16-OCT-2001
Key: gi
Value: 16156830
Key: keywords
Value: ['']
Key: organism
Value: Homo sapiens
References*
location: [0:1250660]
authors: NCBI Annotation Project.
title: Direct Submission
journal: Submitted (11-OCT-2001) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 6
Key: source
Value: human
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo']
Features
type: source
location: [0:1250660](+)
qualifiers:
Key: chromosome, Value: ['1']
Key: db_xref, Value: ['taxon:9606']
Key: organism, Value: ['Homo sapiens']
type: source
location: [0:3290](+)
qualifiers:
Key: clone, Value: ['RP11-13G5']
Key: db_xref, Value: ['taxon:9606']
Key: note, Value: ['Accession AL391218 sequenced by The Sanger Centre']
Key: organism, Value: ['Homo sapiens']
type: misc_feature
location: [215901:365470](+)
qualifiers:
Key: note, Value: ['FISH-mapped clone']
Key: standard_name, Value: ['RP11-242F24']
type: variation
location: [217507:217508](+)
qualifiers:
Key: allele, Value: ['T', 'C']
Key: db_xref, Value: ['dbSNP:811400']
type: mRNA
location: join{[342429:342515](+), [363170:363300](+), [365740:365814](+), [376397:376499](+), [390168:390297](+), [391256:391379](+), [392605:392679](+), [398229:398419](+), [399081:399167](+), [399533:399650](+), [405843:405913](+), [406703:406761](+), [406867:407010](+), [407961:408091](+), [408507:409092](+)}
qualifiers:
Key: db_xref, Value: ['LocusID:55735']
Key: gene, Value: ['FLJ10737']
Key: product, Value: ['hypothetical protein FLJ10737']
Key: transcript_id, Value: ['XM_057697.1']
DB cross refs []
***Record from origin_line.gb with the FeatureParser
Seq: Seq('TTAATTAACTGTCTTCGATTGCGTTTAATTGACGGTTTTCGATTAAAAGCGGTA...CGC', IUPACAmbiguousDNA())
Id: NC_002678.1
Name: NC_002678
Description Mesorhizobium loti, complete genome (edited).
Annotations***
Key: accessions
Value: ['NC_002678']
Key: data_file_division
Value: BCT
Key: date
Value: 28-MAR-2001
Key: gi
Value: 13470324
Key: keywords
Value: ['']
Key: organism
Value: Mesorhizobium loti
References*
authors: Kaneko,T., Nakamura,Y., Sato,S., Asamizu,E., Kato,T., Sasamoto,S., Watanabe,A., Idesawa,K., Ishikawa,A., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Mochizuki,Y., Nakayama,S., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S.
title: Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
journal: DNA Res. 7, 331-338 (2000)
medline id:
pubmed id:
comment:
location: [0:180]
authors: Kaneko,T.
title: Direct Submission
journal: Submitted (05-DEC-2000) Takakazu Kaneko, Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research; Yana 1532-3, Kisarazu, Chiba 292-0812, Japan (E-mail:kaneko@kazusa.or.jp, URL:http://www.kazusa.or.jp/rhizobase/, Tel:81-438-52-3935, Fax:81-438-52-3934)
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Mesorhizobium loti
Key: taxonomy
Value: ['Bacteria', 'Proteobacteria', 'alpha subdivision', 'Rhizobiaceae group', 'Phyllobacteriaceae', 'Mesorhizobium']
Key: topology
Value: circular
Features
type: source
location: [0:180](+)
qualifiers:
Key: db_xref, Value: ['taxon:381']
Key: organism, Value: ['Mesorhizobium loti']
Key: strain, Value: ['MAFF303099']
type: gene
location: [19:120](+)
qualifiers:
Key: gene, Value: ['fake']
DB cross refs []
***Record from blank_seq.gb with the FeatureParser
Seq: Seq('MEECWVTEIANGSKDGLDSNPMKDYMILSGPQKTAVAVLCTLLGLLSALENVAV...SDC', IUPACProtein())
Id: NP_001832.1
Name: NP_001832
Description cannabinoid receptor 2 (macrophage) [Homo sapiens].
Annotations***
Key: accessions
Value: ['NP_001832']
Key: comment
Value: REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from X74328.1.
Summary: The cannabinoid delta-9-tetrahydrocannabinol is the
principal psychoactive ingredient of marijuana. The proteins
encoded by this gene and the cannabinoid receptor 1 (brain) (CNR1)
gene have the characteristics of a guanine nucleotide-binding
protein (G-protein)-coupled receptor for cannabinoids. They inhibit
adenylate cyclase activity in a dose-dependent, stereoselective,
and pertussis toxin-sensitive manner. These proteins have been
found to be involved in the cannabinoid-induced CNS effects
(including alterations in mood and cognition) experienced by users
of marijuana. The cannabinoid receptors are members of family 1 of
the G-protein-coupled receptors.
Key: data_file_division
Value: PRI
Key: date
Value: 18-DEC-2001
Key: db_source
Value: REFSEQ: accession NM_001841.1
Key: gi
Value: 4502929
Key: keywords
Value: ['']
Key: organism
Value: Homo sapiens
Key: pid
Value: g4502929
References*
location: [0:360]
authors: Munro,S., Thomas,K.L. and Abu-Shaar,M.
title: Molecular characterization of a peripheral receptor for cannabinoids
journal: Nature 365 (6441), 61-65 (1993)
medline id: 93368659
pubmed id: 7689702
comment:
location: [0:360]
authors: Galiegue,S., Mary,S., Marchand,J., Dussossoy,D., Carriere,D., Carayon,P., Bouaboula,M., Shire,D., Le Fur,G. and Casellas,P.
title: Expression of central and peripheral cannabinoid receptors in human immune tissues and leukocyte subpopulations
journal: Eur. J. Biochem. 232 (1), 54-61 (1995)
medline id: 96048028
pubmed id: 7556170
comment:
location: [0:360]
authors: Shire,D., Calandra,B., Rinaldi-Carmona,M., Oustric,D., Pessegue,B., Bonnin-Cabanne,O., Le Fur,G., Caput,D. and Ferrara,P.
title: Molecular cloning, expression and function of the murine CB2 peripheral cannabinoid receptor
journal: Biochim. Biophys. Acta 1307 (2), 132-136 (1996)
medline id: 96283804
pubmed id: 8679694
comment:
Key: sequence_version
Value: 1
Key: source
Value: human
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo']
Key: topology
Value: linear
Features
type: source
location: [0:360]
qualifiers:
Key: chromosome, Value: ['1']
Key: db_xref, Value: ['taxon:9606']
Key: map, Value: ['1p36.11']
Key: organism, Value: ['Homo sapiens']
type: Protein
location: [0:360]
qualifiers:
Key: product, Value: ['cannabinoid receptor 2 (macrophage)']
type: Region
location: [49:299]
qualifiers:
Key: db_xref, Value: ['CDD:pfam00001']
Key: note, Value: ['7tm_1']
Key: region_name, Value: ['7 transmembrane receptor (rhodopsin family)']
type: CDS
location: [0:360]
qualifiers:
Key: coded_by, Value: ['NM_001841.1:127..1209']
Key: db_xref, Value: ['LocusID:1269', 'MIM:605051']
Key: gene, Value: ['CNR2']
Key: pseudo, Value: ['']
DB cross refs []
***Record from dbsource_wrap.gb with the FeatureParser
Seq: Seq('VKDGYIVDDRNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKVPDH...RCN', IUPACProtein())
Id: P01485
Name: SCX3_BUTOC
Description Neurotoxin III.
Annotations***
Key: accessions
Value: ['P01485']
Key: comment
Value: [FUNCTION] BINDS TO SODIUM CHANNELS AND INHIBITS THE INACTIVATION
OF THE ACTIVATED CHANNELS, THEREBY BLOCKING NEURONAL TRANSMISSION.
[SUBCELLULAR LOCATION] SECRETED.
[SIMILARITY] BELONGS TO THE ALPHA/BETA-SCORPION TOXIN FAMILY.
ALPHA-TOXIN SUBFAMILY.
Key: data_file_division
Value: INV
Key: date
Value: 16-OCT-2001
Key: db_source
Value: swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505
Key: gi
Value: 134354
Key: keywords
Value: ['Neurotoxin', 'Sodium channel inhibitor', 'Amidation']
Key: organism
Value: Buthus occitanus tunetanus
Key: pid
Value: g134354
References*
location: [0:64]
authors: Vargas,O., Gregoire,J., Martin,M.-F., Bechis,G. and Rochat,H.
title: Neurotoxins from the venoms of two scorpions: Buthus occitanus tunetanus and Buthus occitanus mardochei
journal: Toxicon 20, 79-79 (1982)
medline id:
pubmed id:
comment: SEQUENCE.
Key: source
Value: Tunisian scorpion
Key: taxonomy
Value: ['Eukaryota', 'Metazoa', 'Arthropoda', 'Chelicerata', 'Arachnida', 'Scorpiones', 'Buthoidea', 'Buthidae', 'Buthus']
Key: topology
Value: linear
Features
type: source
location: [0:64]
qualifiers:
Key: db_xref, Value: ['taxon:6871']
Key: organism, Value: ['Buthus occitanus tunetanus']
type: Protein
location: [0:64]
qualifiers:
Key: product, Value: ['Neurotoxin III']
type: Bond
location: bond{[11:12], [62:63]}
qualifiers:
Key: bond_type, Value: ['disulfide']
Key: note, Value: ['BY SIMILARITY.']
type: Bond
location: bond{[15:16], [35:36]}
qualifiers:
Key: bond_type, Value: ['disulfide']
Key: note, Value: ['BY SIMILARITY.']
type: Bond
location: bond{[21:22], [45:46]}
qualifiers:
Key: bond_type, Value: ['disulfide']
Key: note, Value: ['BY SIMILARITY.']
type: Bond
location: bond{[25:26], [47:48]}
qualifiers:
Key: bond_type, Value: ['disulfide']
Key: note, Value: ['BY SIMILARITY.']
type: Site
location: [63:64]
qualifiers:
Key: site_type, Value: ['amidation']
DB cross refs []
***Record from gbvrl1_start.seq with the FeatureParser
Seq: Seq('ATGTCTGGCAACCAGTATACTGAGGAAGTTATGGAGGGAGTAAATTGGTTAAAG...TAA', IUPACAmbiguousDNA())
Id: AB000048.1
Name: AB000048
Description Feline panleukopenia virus DNA for nonstructural protein 1, complete cds.
Annotations***
Key: accessions
Value: ['AB000048']
Key: data_file_division
Value: VRL
Key: date
Value: 05-FEB-1999
Key: gi
Value: 1769753
Key: keywords
Value: ['nonstructural protein 1']
Key: organism
Value: Feline panleukopenia virus
References*
location: [0:2007]
authors: Horiuchi,M.
title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:2007]
authors: Horiuchi,M.
title: Direct Submission
journal: Submitted (22-DEC-1996) Motohiro Horiuchi, Obihiro University of Agriculture and Veterinary Medicine, Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080, Japan (E-mail:horiuchi@obihiro.ac.jp, Tel:0155-49-5392, Fax:0155-49-5402)
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Feline panleukopenia virus
Key: taxonomy
Value: ['Viruses', 'ssDNA viruses', 'Parvoviridae', 'Parvovirinae', 'Parvovirus']
Key: topology
Value: linear
Features
type: source
location: [0:2007](+)
qualifiers:
Key: db_xref, Value: ['taxon:10786']
Key: isolate, Value: ['483']
Key: lab_host, Value: ['Felis domesticus']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Feline panleukopenia virus']
type: CDS
location: [0:2007](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:1769754']
Key: product, Value: ['nonstructural protein 1']
Key: protein_id, Value: ['BAA19009.1']
Key: translation, Value: ['MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD']
DB cross refs []
***Record from gbvrl1_start.seq with the FeatureParser
Seq: Seq('ATGTCTGGCAACCAGTATACTGAGGAAGTTATGGAGGGAGTAAATTGGTTAAAG...TAA', IUPACAmbiguousDNA())
Id: AB000049.1
Name: AB000049
Description Feline panleukopenia virus DNA for nonstructural protein 1, complete cds.
Annotations***
Key: accessions
Value: ['AB000049']
Key: data_file_division
Value: VRL
Key: date
Value: 05-FEB-1999
Key: gi
Value: 1769755
Key: keywords
Value: ['nonstructural protein 1']
Key: organism
Value: Feline panleukopenia virus
References*
location: [0:2007]
authors: Horiuchi,M.
title: Evolutionary pattern of feline panleukopenia virus differs that of canine parvovirus
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:2007]
authors: Horiuchi,M.
title: Direct Submission
journal: Submitted (22-DEC-1996) Motohiro Horiuchi, Obihiro University of Agriculture and Veterinary Medicine, Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080, Japan (E-mail:horiuchi@obihiro.ac.jp, Tel:0155-49-5392, Fax:0155-49-5402)
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Feline panleukopenia virus
Key: taxonomy
Value: ['Viruses', 'ssDNA viruses', 'Parvoviridae', 'Parvovirinae', 'Parvovirus']
Key: topology
Value: linear
Features
type: source
location: [0:2007](+)
qualifiers:
Key: db_xref, Value: ['taxon:10786']
Key: isolate, Value: ['94-1']
Key: lab_host, Value: ['Felis domesticus']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Feline panleukopenia virus']
type: CDS
location: [0:2007](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:1769756']
Key: product, Value: ['nonstructural protein 1']
Key: protein_id, Value: ['BAA19010.1']
Key: translation, Value: ['MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD']
DB cross refs []
***Record from gbvrl1_start.seq with the FeatureParser
Seq: Seq('ATGAGTGATGGAGCAGTTCAACCAGACGGTGGTCAACCTGCTGTCAGAAATGAA...TAA', IUPACAmbiguousDNA())
Id: AB000050.1
Name: AB000050
Description Feline panleukopenia virus DNA for capsid protein 2, complete cds.
Annotations***
Key: accessions
Value: ['AB000050']
Key: data_file_division
Value: VRL
Key: date
Value: 05-FEB-1999
Key: gi
Value: 1769757
Key: keywords
Value: ['capsid protein 2']
Key: organism
Value: Feline panleukopenia virus
References*
location: [0:1755]
authors: Horiuchi,M.
title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus
journal: Unpublished
medline id:
pubmed id:
comment:
location: [0:1755]
authors: Horiuchi,M.
title: Direct Submission
journal: Submitted (22-DEC-1996) Motohiro Horiuchi, Obihiro University of Agriculture and Veterinary Medicine, Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080, Japan (E-mail:horiuchi@obihiro.ac.jp, Tel:0155-49-5392, Fax:0155-49-5402)
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Feline panleukopenia virus
Key: taxonomy
Value: ['Viruses', 'ssDNA viruses', 'Parvoviridae', 'Parvovirinae', 'Parvovirus']
Key: topology
Value: linear
Features
type: source
location: [0:1755](+)
qualifiers:
Key: db_xref, Value: ['taxon:10786']
Key: isolate, Value: ['94-1']
Key: lab_host, Value: ['Felis domesticus']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Feline panleukopenia virus']
type: CDS
location: [0:1755](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:1769758']
Key: product, Value: ['capsid protein 2']
Key: protein_id, Value: ['BAA19011.1']
Key: translation, Value: ['MSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYKRVVVNNMDKTAVKGNMALDDTHVQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNVYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGDPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPNNIGAMKIVYEKSQLAPRKLY']
DB cross refs []
***Record from NC_005816.gb with the FeatureParser
Seq: Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG...CTG', IUPACAmbiguousDNA())
Id: NC_005816.1
Name: NC_005816
Description Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1, complete sequence.
Annotations***
Key: accessions
Value: ['NC_005816']
Key: comment
Value: PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE017046.
COMPLETENESS: full length.
Key: data_file_division
Value: BCT
Key: date
Value: 21-JUL-2008
Key: gi
Value: 45478711
Key: keywords
Value: ['']
Key: organism
Value: Yersinia pestis biovar Microtus str. 91001
References*
location: [0:9609]
authors: Zhou,D., Tong,Z., Song,Y., Han,Y., Pei,D., Pang,X., Zhai,J., Li,M., Cui,B., Qi,Z., Jin,L., Dai,R., Du,Z., Wang,J., Guo,Z., Wang,J., Huang,P. and Yang,R.
title: Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus
journal: J. Bacteriol. 186 (15), 5147-5152 (2004)
medline id:
pubmed id: 15262951
comment:
location: [0:9609]
authors: Song,Y., Tong,Z., Wang,J., Wang,L., Guo,Z., Han,Y., Zhang,J., Pei,D., Zhou,D., Qin,H., Pang,X., Han,Y., Zhai,J., Li,M., Cui,B., Qi,Z., Jin,L., Dai,R., Chen,F., Li,S., Ye,C., Du,Z., Lin,W., Wang,J., Yu,J., Yang,H., Wang,J., Huang,P. and Yang,R.
title: Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans
journal: DNA Res. 11 (3), 179-197 (2004)
medline id:
pubmed id: 15368893
comment:
location: [0:9609]
authors:
consrtm: NCBI Genome Project
title: Direct Submission
journal: Submitted (16-MAR-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
medline id:
pubmed id:
comment:
location: [0:9609]
authors: Song,Y., Tong,Z., Wang,L., Han,Y., Zhang,J., Pei,D., Wang,J., Zhou,D., Han,Y., Pang,X., Zhai,J., Chen,F., Qin,H., Wang,J., Li,S., Guo,Z., Ye,C., Du,Z., Lin,W., Wang,J., Yu,J., Yang,H., Wang,J., Huang,P. and Yang,R.
title: Direct Submission
journal: Submitted (24-APR-2003) The Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, No. 20, Dongdajie Street, Fengtai District, Beijing 100071, People's Republic of China
medline id:
pubmed id:
comment:
Key: sequence_version
Value: 1
Key: source
Value: Yersinia pestis biovar Microtus str. 91001
Key: taxonomy
Value: ['Bacteria', 'Proteobacteria', 'Gammaproteobacteria', 'Enterobacteriales', 'Enterobacteriaceae', 'Yersinia']
Key: topology
Value: circular
Features
type: source
location: [0:9609](+)
qualifiers:
Key: biovar, Value: ['Microtus']
Key: db_xref, Value: ['taxon:229193']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Yersinia pestis biovar Microtus str. 91001']
Key: plasmid, Value: ['pPCP1']
Key: strain, Value: ['91001']
type: repeat_region
location: [0:1954](+)
qualifiers:
type: gene
location: [86:1109](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767718']
Key: locus_tag, Value: ['YP_pPCP01']
type: CDS
location: [86:1109](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478712', 'GeneID:2767718']
Key: locus_tag, Value: ['YP_pPCP01']
Key: note, Value: ['similar to corresponding CDS from previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many transposase entries for insertion sequence IS100 of Yersinia pestis. Contains IS21-like element transposase, HTH domain (Interpro|IPR007101)']
Key: product, Value: ['putative transposase']
Key: protein_id, Value: ['NP_995567.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA']
type: misc_feature
location: [86:959](+)
qualifiers:
Key: db_xref, Value: ['CDD:34222']
Key: locus_tag, Value: ['YP_pPCP01']
Key: note, Value: ['Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584']
type: misc_feature
location: [<110:209](+)
qualifiers:
Key: db_xref, Value: ['CDD:186341']
Key: locus_tag, Value: ['YP_pPCP01']
Key: note, Value: ['Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116']
type: misc_feature
location: [437:812](+)
qualifiers:
Key: db_xref, Value: ['CDD:194099']
Key: locus_tag, Value: ['YP_pPCP01']
Key: note, Value: ['Integrase core domain; Region: rve; cl01316']
type: gene
location: [1105:1888](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767716']
Key: locus_tag, Value: ['YP_pPCP02']
type: CDS
location: [1105:1888](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478713', 'GeneID:2767716']
Key: locus_tag, Value: ['YP_pPCP02']
Key: note, Value: ['similar to corresponding CDS form previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many ATP-binding protein entries for insertion sequence IS100 of Yersinia pestis. Contains Chaperonin clpA/B (Interpro|IPR001270). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, Molecular Function: ATP binding (GO:0005524)). Contains Bacterial chromosomal replication initiator protein, DnaA (Interpro|IPR001957, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275)). Contains AAA ATPase (Interpro|IPR003593, Molecular Function: nucleotide binding (GO:0000166))']
Key: product, Value: ['transposase/IS protein']
Key: protein_id, Value: ['NP_995568.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE']
type: misc_feature
location: [1108:1885](+)
qualifiers:
Key: db_xref, Value: ['CDD:181681']
Key: locus_tag, Value: ['YP_pPCP02']
Key: note, Value: ['transposase/IS protein; Provisional; Region: PRK09183']
type: misc_feature
location: [1366:>1669](+)
qualifiers:
Key: db_xref, Value: ['CDD:99707']
Key: locus_tag, Value: ['YP_pPCP02']
Key: note, Value: ['The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009']
type: misc_feature
location: [1432:1456](+)
qualifiers:
Key: db_xref, Value: ['CDD:99707']
Key: locus_tag, Value: ['YP_pPCP02']
Key: note, Value: ['Walker A motif; other site']
type: misc_feature
location: order{[1435:1459](+), [1618:1621](+)}
qualifiers:
Key: db_xref, Value: ['CDD:99707']
Key: locus_tag, Value: ['YP_pPCP02']
Key: note, Value: ['ATP binding site [chemical binding]; other site']
type: misc_feature
location: [1606:1624](+)
qualifiers:
Key: db_xref, Value: ['CDD:99707']
Key: locus_tag, Value: ['YP_pPCP02']
Key: note, Value: ['Walker B motif; other site']
type: gene
location: [2924:3119](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767717']
Key: gene, Value: ['rop']
Key: gene_synonym, Value: ['rom']
Key: locus_tag, Value: ['YP_pPCP03']
type: CDS
location: [2924:3119](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478714', 'GeneID:2767717']
Key: gene, Value: ['rop']
Key: gene_synonym, Value: ['rom']
Key: locus_tag, Value: ['YP_pPCP03']
Key: note, Value: ['Best Blastp hit =gi|16082682|ref|NP_395229.1| (NC_003132) putative replication regulatory protein [Yersinia pestis], gi|5763813|emb|CAB531 66.1| (AL109969) putative replication regulatory protein [Yersinia pestis]; similar to gb|AAK91579.1| (AY048853), RNAI modulator protein Rom [Salmonella choleraesuis], Contains Regulatory protein Rop (Interpro|IPR000769)']
Key: product, Value: ['putative replication regulatory protein']
Key: protein_id, Value: ['NP_995569.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MNKQQQTALNMARFIRSQSLILLEKLDALDADEQAAMCERLHELAEELQNSIQARFEAESETGT']
type: misc_feature
location: [2924:3107](+)
qualifiers:
Key: db_xref, Value: ['CDD:145136']
Key: gene, Value: ['rop']
Key: gene_synonym, Value: ['rom']
Key: locus_tag, Value: ['YP_pPCP03']
Key: note, Value: ['Rop protein; Region: Rop; pfam01815']
type: gene
location: [3485:3857](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767720']
Key: locus_tag, Value: ['YP_pPCP04']
type: CDS
location: [3485:3857](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478715', 'GeneID:2767720']
Key: locus_tag, Value: ['YP_pPCP04']
Key: note, Value: ['Best Blastp hit = gi|321919|pir||JQ1541 hypothetical 16.9K protein - Salmonella typhi murium plasmid NTP16.']
Key: product, Value: ['hypothetical protein']
Key: protein_id, Value: ['NP_995570.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MSKKRRPQKRPRRRRFFHRLRPPDEHHKNRRSSQRWRNPTGLKDTRRFPPEAPSCALLFRPCRLPDTSPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTTAPYPVTIVLSPTR']
type: misc_feature
location: [3497:3626](+)
qualifiers:
Key: locus_tag, Value: ['YP_pPCP04']
Key: note, Value: ['ProfileScan match to entry PS50323 ARG_RICH, E-value 8.981']
type: gene
location: [4342:4780](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767712']
Key: gene, Value: ['pim']
Key: locus_tag, Value: ['YP_pPCP05']
type: CDS
location: [4342:4780](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478716', 'GeneID:2767712']
Key: gene, Value: ['pim']
Key: locus_tag, Value: ['YP_pPCP05']
Key: note, Value: ['similar to many previously sequenced pesticin immunity protein entries of Yersinia pestis plasmid pPCP, e.g. gi| 16082683|,ref|NP_395230.1| (NC_003132) , gi|1200166|emb|CAA90861.1| (Z54145 ) , gi|1488655| emb|CAA63439.1| (X92856) , gi|2996219|gb|AAC62543.1| (AF053945) , and gi|5763814|emb|CAB531 67.1| (AL109969)']
Key: product, Value: ['pesticin immunity protein']
Key: protein_id, Value: ['NP_995571.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MGGGMISKLFCLALIFLSSSGLAEKNTYTAKDILQNLELNTFGNSLSHGIYGKQTTFKQTEFTNIKSNTKKHIALINKDNSWMISLKILGIKRDEYTVCFEDFSLIRPPTYVAIHPLLIKKVKSGNFIVVKEIKKSIPGCTVYYH']
type: gene
location: [4814:5888](-)
qualifiers:
Key: db_xref, Value: ['GeneID:2767721']
Key: gene, Value: ['pst']
Key: locus_tag, Value: ['YP_pPCP06']
type: CDS
location: [4814:5888](-)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478717', 'GeneID:2767721']
Key: gene, Value: ['pst']
Key: locus_tag, Value: ['YP_pPCP06']
Key: note, Value: ['Best Blastp hit =|16082684|ref|NP_395231.1| (NC_003132) pesticin [Yersinia pestis], gi|984824|gb|AAA75369.1| (U31974) pesticin [Yersinia pestis], gi|1488654|emb|CAA63438.1| (X92856) pesticin [Yersinia pestis], gi|2996220|gb|AAC62544.1| (AF053945) pesticin [Yersinia pestis], gi|5763815|emb|CAB53168.1| (AL1099 69) pesticin [Yersinia pestis]']
Key: product, Value: ['pesticin']
Key: protein_id, Value: ['NP_995572.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLNDGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKREGALVQKDIDSGLLK']
type: variation
location: [5909:5911](+)
qualifiers:
Key: note, Value: ['compared to AF053945']
Key: replace, Value: ['']
type: variation
location: [5933:5933](+)
qualifiers:
Key: note, Value: ['compared to AL109969']
Key: replace, Value: ['a']
type: variation
location: [5933:5933](+)
qualifiers:
Key: note, Value: ['compared to AF053945']
Key: replace, Value: ['aa']
type: variation
location: [5947:5948](+)
qualifiers:
Key: note, Value: ['compared to AL109969']
Key: replace, Value: ['c']
type: gene
location: [6004:6421](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767719']
Key: locus_tag, Value: ['YP_pPCP07']
type: CDS
location: [6004:6421](+)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478718', 'GeneID:2767719']
Key: locus_tag, Value: ['YP_pPCP07']
Key: note, Value: ['Best Blastp hit = gi|16082685|ref|NP_395232.1| (NC_003132) hypothetical protein [Yersinia pestis], gi|5763816|emb|CAB53169.1| (AL109969) hypothetical protein [Yersinia pestis]']
Key: product, Value: ['hypothetical protein']
Key: protein_id, Value: ['NP_995573.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MKFHFCDLNHSYKNQEGKIRSRKTAPGNIRKKQKGDNVSKTKSGRHRLSKTDKRLLAALVVAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKYLSGKKPEGVEPREGQEREDLP']
type: variation
location: [6524:6525](+)
qualifiers:
Key: note, Value: ['compared to AF053945 and AL109969']
Key: replace, Value: ['c']
type: gene
location: [6663:7602](+)
qualifiers:
Key: db_xref, Value: ['GeneID:2767715']
Key: gene, Value: ['pla']
Key: locus_tag, Value: ['YP_pPCP08']
type: CDS
location: [6663:7602](+)
qualifiers:
Key: EC_number, Value: ['3.4.23.48']
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478719', 'GeneID:2767715']
Key: gene, Value: ['pla']
Key: locus_tag, Value: ['YP_pPCP08']
Key: note, Value: ['outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA']
Key: product, Value: ['outer membrane protease']
Key: protein_id, Value: ['NP_995574.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQIIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF']
type: misc_feature
location: [6663:7599](+)
qualifiers:
Key: db_xref, Value: ['CDD:186487']
Key: gene, Value: ['pla']
Key: locus_tag, Value: ['YP_pPCP08']
Key: note, Value: ['Omptin family; Region: Omptin; cl01886']
type: gene
location: [7788:8088](-)
qualifiers:
Key: db_xref, Value: ['GeneID:2767713']
Key: locus_tag, Value: ['YP_pPCP09']
type: CDS
location: [7788:8088](-)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478720', 'GeneID:2767713']
Key: locus_tag, Value: ['YP_pPCP09']
Key: note, Value: ['Best Blastp hit = gi|16082687|ref|NP_395234.1| (NC_003132) putative transcriptional regulator [Yersinia pestis], gi|5763818|emb|CAB53171.1| (AL109969) putative transcriptional regulator [Yersinia pestis].']
Key: product, Value: ['putative transcriptional regulator']
Key: protein_id, Value: ['NP_995575.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELPTGRRVAFHV']
type: misc_feature
location: [7836:7995](-)
qualifiers:
Key: db_xref, Value: ['CDD:195788']
Key: locus_tag, Value: ['YP_pPCP09']
Key: note, Value: ['Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100']
type: gene
location: [8087:8360](-)
qualifiers:
Key: db_xref, Value: ['GeneID:2767714']
Key: locus_tag, Value: ['YP_pPCP10']
type: CDS
location: [8087:8360](-)
qualifiers:
Key: codon_start, Value: ['1']
Key: db_xref, Value: ['GI:45478721', 'GeneID:2767714']
Key: locus_tag, Value: ['YP_pPCP10']
Key: note, Value: ['Best Blastp hit = gi|16082688|ref|NP_395235.1| (NC_003132) hypothetical protein [ Yersinia pestis], gi|5763819|emb|CAB53172.1| (AL109969) hypothetical protein [Yersinia pestis]']
Key: product, Value: ['hypothetical protein']
Key: protein_id, Value: ['NP_995576.1']
Key: transl_table, Value: ['11']
Key: translation, Value: ['MADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFTAHLNTLESK']
type: misc_feature
location: [8090:>8357](-)
qualifiers:
Key: db_xref, Value: ['CDD:194142']
Key: locus_tag, Value: ['YP_pPCP10']
Key: note, Value: ['Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470']
type: variation
location: [8529:8529](+)
qualifiers:
Key: note, Value: ['compared to AL109969']
Key: replace, Value: ['tt']
DB cross refs ['Project:58037']
***Record from no_end_marker.gb with the FeatureParser
Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA())
Id: AB070938.1
Name: AB070938
Description Streptomyces avermitilis melanin biosynthetic gene cluster.
Annotations***
Key: accessions
Value: ['AB070938']
Key: data_file_division
Value: BCT
Key: date
Value: 11-OCT-2001
Key: gi
Value: 15823953
Key: keywords
Value: ['']
Key: organism
Value: Streptomyces avermitilis
Key: sequence_version
Value: 1
Key: source
Value: Streptomyces avermitilis
Key: taxonomy
Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces']
Key: topology
Value: linear
Features
type: source
location: [0:6497](+)
qualifiers:
Key: db_xref, Value: ['taxon:33903']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Streptomyces avermitilis']
DB cross refs []
***Record from wrong_sequence_indent.gb with the FeatureParser
Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA())
Id: AB070938.1
Name: AB070938
Description Streptomyces avermitilis melanin biosynthetic gene cluster.
Annotations***
Key: accessions
Value: ['AB070938']
Key: data_file_division
Value: BCT
Key: date
Value: 11-OCT-2001
Key: gi
Value: 15823953
Key: keywords
Value: ['']
Key: organism
Value: Streptomyces avermitilis
Key: sequence_version
Value: 1
Key: source
Value: Streptomyces avermitilis
Key: taxonomy
Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces']
Key: topology
Value: linear
Features
type: source
location: [0:6497](+)
qualifiers:
Key: db_xref, Value: ['taxon:33903']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Streptomyces avermitilis']
DB cross refs []
***Record from invalid_locus_line_spacing.gb with the FeatureParser
Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA())
Id: AB070938.1
Name: AB070938
Description Streptomyces avermitilis melanin biosynthetic gene cluster.
Annotations***
Key: accessions
Value: ['AB070938']
Key: data_file_division
Value: BCT
Key: date
Value: 11-OCT-2001
Key: gi
Value: 15823953
Key: keywords
Value: ['']
Key: organism
Value: Streptomyces avermitilis
Key: sequence_version
Value: 1
Key: source
Value: Streptomyces avermitilis
Key: taxonomy
Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces']
Features
type: source
location: [0:6497](+)
qualifiers:
Key: db_xref, Value: ['taxon:33903']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Streptomyces avermitilis']
DB cross refs []
***Record from empty_feature_qualifier.gb with the FeatureParser
Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA())
Id: AB070938.1
Name: AB070938
Description Streptomyces avermitilis melanin biosynthetic gene cluster.
Annotations***
Key: accessions
Value: ['AB070938']
Key: data_file_division
Value: BCT
Key: date
Value: 11-OCT-2001
Key: gi
Value: 15823953
Key: keywords
Value: ['']
Key: organism
Value: Streptomyces avermitilis
Key: sequence_version
Value: 1
Key: source
Value: Streptomyces avermitilis
Key: taxonomy
Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces']
Key: topology
Value: linear
Features
type: source
location: [0:6497](+)
qualifiers:
Key: db_xref, Value: ['taxon:33903']
Key: mol_type, Value: ['genomic DNA']
Key: note, Value: ["This is a correct note, the following one isn't"]
Key: organism, Value: ['Streptomyces avermitilis']
DB cross refs []
***Record from invalid_misc_feature.gb with the FeatureParser
Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA())
Id: AB070938.1
Name: AB070938
Description Streptomyces avermitilis melanin biosynthetic gene cluster.
Annotations***
Key: accessions
Value: ['AB070938']
Key: data_file_division
Value: BCT
Key: date
Value: 11-OCT-2001
Key: gi
Value: 15823953
Key: keywords
Value: ['']
Key: organism
Value: Streptomyces avermitilis
Key: sequence_version
Value: 1
Key: source
Value: Streptomyces avermitilis
Key: taxonomy
Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces']
Key: topology
Value: linear
Features
type: source
location: [0:6497](+)
qualifiers:
Key: db_xref, Value: ['taxon:33903']
Key: mol_type, Value: ['genomic DNA']
Key: organism, Value: ['Streptomyces avermitilis']
DB cross refs []
***Record from 1MRR_A.gp with the FeatureParser
Seq: Seq('AYTTFSATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVD...FQL', IUPACProtein())
Id: 1MRR_A
Name: 1MRR_A
Description Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization.
Annotations***
Key: accessions
Value: ['1MRR_A']
Key: comment
Value: 1 Ribonucleotide Reductase R1 Protein.
Key: data_file_division
Value: BCT
Key: date
Value: 10-OCT-2012
Key: db_source
Value: pdb: molecule 1MRR, chain 65, release Aug 28, 2012; deposition: Jul 28, 1992; class: Reductase(Acting On Ch2); source: Mmdb_id: 50351, Pdb_id 1: 1MRR; Exp. method: X-Ray Diffraction.
Key: gi
Value: 494379
Key: keywords
Value: ['']
Key: organism
Value: Escherichia coli
References*
location: [0:375]
authors: Nordlund,P., Sjoberg,B.M. and Eklund,H.
title: Three-dimensional structure of the free radical protein of ribonucleotide reductase
journal: Nature 345 (6276), 593-598 (1990)
medline id:
pubmed id: 2190093
comment:
location: [0:375]
authors: Atta,M., Nordlund,P., Aberg,A., Eklund,H. and Fontecave,M.
title: Substitution of manganese for iron in ribonucleotide reductase from Escherichia coli. Spectroscopic and crystallographic characterization
journal: J. Biol. Chem. 267 (29), 20682-20688 (1992)
medline id:
pubmed id: 1328209
comment:
location: [0:375]
authors: Eklund,H. and Nordlund,P.
title: Direct Submission
journal: Submitted (28-JUL-1992)
medline id:
pubmed id:
comment:
Key: source
Value: Escherichia coli
Key: taxonomy
Value: ['Bacteria', 'Proteobacteria', 'Gammaproteobacteria', 'Enterobacteriales', 'Enterobacteriaceae', 'Escherichia']
Key: topology
Value: linear
Features
type: source
location: [0:375]
qualifiers:
Key: db_xref, Value: ['taxon:562']
Key: organism, Value: ['Escherichia coli']
type: Region
location: [27:340]
qualifiers:
Key: db_xref, Value: ['CDD:153108']
Key: note, Value: ['Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; cd01049']
Key: region_name, Value: ['RNRR2']
type: SecStr
location: [34:46]
qualifiers:
Key: note, Value: ['helix 1']
Key: sec_str_type, Value: ['helix']
type: Site
location: order{[36:37], [43:44], [108:110], [112:113], [115:117], [119:120], [122:123], [136:138], [140:141]}
qualifiers:
Key: db_xref, Value: ['CDD:153108']
Key: note, Value: ['dimer interface [polypeptide binding]']
Key: site_type, Value: ['other']
type: Site
location: order{[47:48], [83:84], [114:115], [117:118], [121:122], [235:237], [240:241]}
qualifiers:
Key: db_xref, Value: ['CDD:153108']
Key: note, Value: ['putative radical transfer pathway']
Key: site_type, Value: ['other']
type: SecStr
location: [56:65]
qualifiers:
Key: note, Value: ['helix 2']
Key: sec_str_type, Value: ['helix']
type: SecStr
location: [66:87]
qualifiers:
Key: note, Value: ['helix 3']
Key: sec_str_type, Value: ['helix']
type: Site
location: order{[83:84], [114:115], [117:118], [203:204], [237:238], [240:241]}
qualifiers:
Key: db_xref, Value: ['CDD:153108']
Key: note, Value: ['diiron center [ion binding]']
Key: site_type, Value: ['other']
type: Het
location: join{[83:84], [114:115], [117:118], [237:238]}
qualifiers:
Key: heterogen, Value: ['( MN,1000 )']
type: SecStr
location: [101:129]
qualifiers:
Key: note, Value: ['helix 4']
Key: sec_str_type, Value: ['helix']
type: Het
location: join{[114:115], [203:204], [237:238], [240:241]}
qualifiers:
Key: heterogen, Value: ['( MN,1001 )']
type: Site
location: [121:122]
qualifiers:
Key: db_xref, Value: ['CDD:153108']
Key: note, Value: ['tyrosyl radical']
Key: site_type, Value: ['other']
type: SecStr
location: [132:140]
qualifiers:
Key: note, Value: ['helix 5']
Key: sec_str_type, Value: ['helix']
type: SecStr
location: [142:151]
qualifiers:
Key: note, Value: ['helix 6']
Key: sec_str_type, Value: ['helix']
type: SecStr
location: [152:169]
qualifiers:
Key: note, Value: ['helix 7']
Key: sec_str_type, Value: ['helix']
type: SecStr
location: [171:177]
qualifiers:
Key: note, Value: ['strand 1']
Key: sec_str_type, Value: ['sheet']
type: SecStr
location: [179:185]
qualifiers:
Key: note, Value: ['strand 2']
Key: sec_str_type, Value: ['sheet']
type: SecStr
location: [185:216]
qualifiers:
Key: note, Value: ['helix 8']
Key: sec_str_type, Value: ['helix']
type: Het
location: join{[193:194], [271:272]}
qualifiers:
Key: heterogen, Value: ['( HG,1003 )']
type: Het
location: [195:196]
qualifiers:
Key: heterogen, Value: ['( HG,1005 )']
type: Het
location: join{[195:196], [195:196]}
qualifiers:
Key: heterogen, Value: ['( HG,1002 )']
type: Het
location: join{[209:210], [213:214], [213:214]}
qualifiers:
Key: heterogen, Value: ['( HG,1004 )']
type: SecStr
location: [224:253]
qualifiers:
Key: note, Value: ['helix 9']
Key: sec_str_type, Value: ['helix']
type: SecStr
location: [259:269]
qualifiers:
Key: note, Value: ['helix 10']
Key: sec_str_type, Value: ['helix']
type: Bond
location: bond{[267:268], [271:272]}
qualifiers:
Key: bond_type, Value: ['disulfide']
type: SecStr
location: [269:285]
qualifiers:
Key: note, Value: ['helix 11']
Key: sec_str_type, Value: ['helix']
type: Het
location: join{[283:284], [304:305], [308:309], [304:305]}
qualifiers:
Key: heterogen, Value: ['( HG,1006 )']
type: SecStr
location: [300:319]
qualifiers:
Key: note, Value: ['helix 12']
Key: sec_str_type, Value: ['helix']
DB cross refs []
***Record from noref.gb with the RecordParser
sequence length: 1622
locus: NM_006141
definition: Homo sapiens dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2), mRNA.
accession: ['NM_006141']
feature key: source
location: 1..1622
num qualifiers: 3
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /map= value: "16"
feature key: gene
location: 1..1622
num qualifiers: 3
key: /gene= value: "DNCLI2"
key: /note= value: "LIC2"
key: /db_xref= value: "LocusID:1783"
feature key: CDS
location: 7..1485
num qualifiers: 8
key: /gene= value: "DNCLI2"
key: /note= value: "similar to R. norvegicus and G. gallus dynein light intermediate chain 2, Swiss-Prot Accession Numbers Q62698 and Q90828, respectively"
key: /codon_start= value: 1
key: /db_xref= value: "LocusID:1783"
key: /product= value: "dynein, cytoplasmic, light intermediate polypeptide 2"
key: /protein_id= value: "NP_006132.1"
key: /db_xref= value: "GI:5453634"
key: /translation= value: "MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVTNSSTENEA"
***Record from cor6_6.gb with the RecordParser
sequence length: 513
locus: ATCOR66M
definition: A.thaliana cor6.6 mRNA.
accession: ['X55053']
reference title: Direct Submission
reference title: cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana
feature key: source
location: 1..513
num qualifiers: 3
key: /organism= value: "Arabidopsis thaliana"
key: /strain= value: "Columbia"
key: /db_xref= value: "taxon:3702"
feature key: gene
location: 50..250
num qualifiers: 1
key: /gene= value: "cor6.6"
feature key: CDS
location: 50..250
num qualifiers: 7
key: /gene= value: "cor6.6"
key: /note= value: "cold regulated"
key: /codon_start= value: 1
key: /protein_id= value: "CAA38894.1"
key: /db_xref= value: "GI:16230"
key: /db_xref= value: "SWISS-PROT:P31169"
key: /translation= value: "MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK"
***Record from cor6_6.gb with the RecordParser
sequence length: 880
locus: ATKIN2
definition: A.thaliana kin2 gene.
accession: ['X62281']
reference title: Direct Submission
reference title: Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana
feature key: source
location: 1..880
num qualifiers: 3
key: /organism= value: "Arabidopsis thaliana"
key: /strain= value: "ssp. L. Heynh, Colombia"
key: /db_xref= value: "taxon:3702"
feature key: TATA_signal
location: 9..20
num qualifiers: 0
feature key: exon
location: 44..160
num qualifiers: 2
key: /gene= value: "kin2"
key: /number= value: 1
feature key: prim_transcript
location: 44..>579
num qualifiers: 1
key: /gene= value: "kin2"
feature key: mRNA
location: join(44..160,320..390,504..>579)
num qualifiers: 1
key: /gene= value: "kin2"
feature key: gene
location: 44..579
num qualifiers: 1
key: /gene= value: "kin2"
feature key: CDS
location: join(104..160,320..390,504..579)
num qualifiers: 6
key: /gene= value: "kin2"
key: /codon_start= value: 1
key: /protein_id= value: "CAA44171.1"
key: /db_xref= value: "GI:16354"
key: /db_xref= value: "SWISS-PROT:P31169"
key: /translation= value: "MSETNKNAFQAGQAAGKAERRRAMFCWTRPRMLLLQLELPRNRAGKSISDAAVGGVNFVKDKTGLNK"
feature key: intron
location: 161..319
num qualifiers: 2
key: /gene= value: "kin2"
key: /number= value: 1
feature key: exon
location: 320..390
num qualifiers: 2
key: /gene= value: "kin2"
key: /number= value: 2
feature key: intron
location: 391..503
num qualifiers: 2
key: /gene= value: "kin2"
key: /number= value: 2
feature key: exon
location: 504..>579
num qualifiers: 2
key: /gene= value: "kin2"
key: /number= value: 3
feature key: polyA_signal
location: 620..625
num qualifiers: 0
feature key: polyA_signal
location: 641..646
num qualifiers: 0
feature key: polyA_site
location: 785
num qualifiers: 0
feature key: polyA_site
location: 800
num qualifiers: 0
***Record from cor6_6.gb with the RecordParser
sequence length: 441
locus: BNAKINI
definition: Rapeseed Kin1 protein (kin1) mRNA, complete cds.
accession: ['M81224']
reference title: Nucleotide sequence of a winter B. napus Kin 1 cDNA
feature key: source
location: 1..441
num qualifiers: 5
key: /organism= value: "Brassica napus"
key: /cultivar= value: "Jet neuf"
key: /db_xref= value: "taxon:3708"
key: /dev_stage= value: "cold induced"
key: /tissue_type= value: "leaf"
feature key: gene
location: 34..300
num qualifiers: 1
key: /gene= value: "kin1"
feature key: CDS
location: 34..231
num qualifiers: 6
key: /gene= value: "kin1"
key: /codon_start= value: 1
key: /evidence= value: experimental
key: /protein_id= value: "AAA32993.1"
key: /db_xref= value: "GI:167146"
key: /translation= value: "MADNKQSFQAGQASGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK"
feature key: polyA_signal
location: 241..247
num qualifiers: 2
key: /gene= value: "kin1"
key: /note= value: "putative"
feature key: polyA_signal
location: 294..300
num qualifiers: 2
key: /gene= value: "kin1"
key: /note= value: "putative"
feature key: polyA_site
location: 441
num qualifiers: 1
key: /gene= value: "kin1"
***Record from cor6_6.gb with the RecordParser
sequence length: 206
locus: ARU237582
definition: Armoracia rusticana csp14 gene (partial), exons 2-3.
accession: ['AJ237582']
reference title:
reference title: Direct Submission
feature key: source
location: 1..206
num qualifiers: 3
key: /organism= value: "Armoracia rusticana"
key: /db_xref= value: "taxon:3704"
key: /country= value: "Russia:Bashkortostan"
feature key: mRNA
location: join(<1..48,143..>206)
num qualifiers: 1
key: /gene= value: "csp14"
feature key: exon
location: 1..48
num qualifiers: 2
key: /gene= value: "csp14"
key: /number= value: 2
feature key: gene
location: 1..206
num qualifiers: 1
key: /gene= value: "csp14"
feature key: CDS
location: join(<1..48,143..>206)
num qualifiers: 6
key: /gene= value: "csp14"
key: /codon_start= value: 2
key: /product= value: "cold shock protein"
key: /protein_id= value: "CAB39890.1"
key: /db_xref= value: "GI:4538893"
key: /translation= value: "DKAKDAAAAAGASAQQAGKNISDAAAGGVNFVKEKTG"
feature key: intron
location: 49..142
num qualifiers: 2
key: /gene= value: "csp14"
key: /number= value: 2
feature key: exon
location: 143..206
num qualifiers: 2
key: /gene= value: "csp14"
key: /number= value: 3
***Record from cor6_6.gb with the RecordParser
sequence length: 282
locus: BRRBIF72
definition: Brassica rapa (clone bif72) kin mRNA, complete cds.
accession: ['L31939']
reference title: Nucleotide sequences of kin gene in chinese cabbage
feature key: source
location: 1..282
num qualifiers: 3
key: /organism= value: "Brassica rapa"
key: /db_xref= value: "taxon:3711"
key: /dev_stage= value: "flower"
feature key: gene
location: 24..221
num qualifiers: 1
key: /gene= value: "kin"
feature key: CDS
location: 24..221
num qualifiers: 5
key: /gene= value: "kin"
key: /codon_start= value: 1
key: /protein_id= value: "AAA91051.1"
key: /db_xref= value: "GI:1209262"
key: /translation= value: "MADNKQSFQAGQAAGRAEEKGNVLLMDKVKDAATAAGALQTAGQKITEAAGGAVNLVKEKTGMNK"
***Record from cor6_6.gb with the RecordParser
sequence length: 497
locus: AF297471
definition: Brassica napus BN28a (BN28a) gene, complete cds.
accession: ['AF297471']
reference title: BN28a, a low temperature-induced gene of Brassica napus
reference title: Direct Submission
feature key: source
location: 1..497
num qualifiers: 3
key: /organism= value: "Brassica napus"
key: /cultivar= value: "Cascade"
key: /db_xref= value: "taxon:3708"
feature key: mRNA
location: join(<1..54,241..309,423..>497)
num qualifiers: 2
key: /gene= value: "BN28a"
key: /product= value: "BN28a"
feature key: gene
location: <1..>497
num qualifiers: 1
key: /gene= value: "BN28a"
feature key: CDS
location: join(1..54,241..309,423..497)
num qualifiers: 7
key: /gene= value: "BN28a"
key: /note= value: "low temperature-induced; similar to Brassica napus Kin1 in Accession Number M81224"
key: /codon_start= value: 1
key: /product= value: "BN28a"
key: /protein_id= value: "AAG13407.1"
key: /db_xref= value: "GI:10121869"
key: /translation= value: "MADNKQSFQAGQAAGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK"
***Record from iro.gb with the RecordParser
sequence length: 1326
locus: IRO125195
definition: Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 125195.
accession: ['AL109817']
reference title: The European IMAGE consortium for integrated Molecular analysis of human gene transcripts
reference title: Direct Submission
feature key: source
location: 1..1326
num qualifiers: 6
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /chromosome= value: "21"
key: /clone= value: "IMAGE cDNA clone 125195"
key: /clone_lib= value: "Soares fetal liver spleen 1NFLS"
key: /note= value: "contains Alu repeat; likely to be be derived from unprocessed nuclear RNA or genomic DNA; encodes putative exons identical to FTCD; formimino transferase cyclodeaminase; formimino transferase (EC 2.1.2.5) /formimino tetrahydro folate cyclodeaminase (EC 4.3.1.4)"
feature key: gene
location: 341..756
num qualifiers: 1
key: /gene= value: "FTCD"
feature key: exon
location: 341..384
num qualifiers: 2
key: /gene= value: "FTCD"
key: /number= value: 1
feature key: intron
location: 385..617
num qualifiers: 2
key: /gene= value: "FTCD"
key: /number= value: 1
feature key: exon
location: 618..756
num qualifiers: 2
key: /gene= value: "FTCD"
key: /number= value: 2
***Record from pri1.gb with the RecordParser
sequence length: 741
locus: HUGLUT1
definition: Human fructose transporter (GLUT5) gene, promoter and exon 1.
accession: ['U05344']
reference title: Regulation of expression of the human fructose transporter (GLUT5) by cyclic AMP
reference title: Direct Submission
feature key: source
location: 1..741
num qualifiers: 8
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /chromosome= value: "1"
key: /map= value: "1p31"
key: /clone= value: "lambda hGT5-157"
key: /tissue_type= value: "liver"
key: /clone_lib= value: "partial Hae III/Alu I fetal human liver library in lambda Ch4A of Maniatis"
key: /dev_stage= value: "fetal"
feature key: repeat_region
location: 1..73
num qualifiers: 1
key: /rpt_family= value: "Alu"
feature key: promoter
location: 1..513
num qualifiers: 0
feature key: 5'UTR
location: 514..609
num qualifiers: 1
key: /gene= value: "GLUT5"
feature key: exon
location: 514..642
num qualifiers: 3
key: /gene= value: "GLUT5"
key: /number= value: 1
key: /product= value: "fructose transporter"
***Record from arab1.gb with the RecordParser
sequence length: 86436
locus: AC007323
definition: Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
accession: ['AC007323']
reference title: Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I
reference title: Direct Submission
reference title: Direct Submission
reference title: Direct Submission
reference title: Direct Submission
feature key: source
location: 1..86436
num qualifiers: 4
key: /organism= value: "Arabidopsis thaliana"
key: /db_xref= value: "taxon:3702"
key: /chromosome= value: "1"
key: /clone= value: "T25K16"
feature key: CDS
location: join(3462..3615,3698..3978,4077..4307,4408..4797,4876..5028,5141..5332)
num qualifiers: 7
key: /note= value: "containing similarity to NAM-like proteins gi|3695378"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.1"
key: /protein_id= value: "AAF26460.1"
key: /db_xref= value: "GI:6715633"
key: /translation= value: "MEDQVGFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENNKGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDLLPEHQKLCNVTLFRFSSYFRLSLLSPMFYTDELMCLPPEILQRTYVICRLEYKGDDADILSAYAIDPTPAFVPNMTSSAGSVVNQSRQRNSGSYNTYSEYDSANHGQQFNENSNIMQQQPLQGSFNPLLEYDFANHGGQWLSDYIDLQQQVPYLAPYENESEMIWKHVIEENFEFLVDERTSMQQHYSDHRPKKPVSGVLPDDSSDTETGSMIFEDTSSSTDSVGSSDEPGHTRIDDIPSLNIIEPLHNYKAQEQPKQQSKEKVISSQKSECEWKMAEDSIKIPPSTNTVKQSWIVLENAQWNYLKNMIIGVLLFISVISWIILVG"
feature key: CDS
location: complement(join(6617..6953,7266..7351,7464..7603,7916..7998,8087..8166,8273..8368))
num qualifiers: 7
key: /note= value: "hypothetical protein"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.2"
key: /protein_id= value: "AAF26477.1"
key: /db_xref= value: "GI:6715650"
key: /translation= value: "MAASEHRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMVCFNHFLSLFGPKVYRHVLYNAINPATVNIQVKNYFNSTSRCVVGEIHRQTYLKSPELIIDRSLLLRKSDEESSFSDSPVLLSIKVLIGVLSANAAFIISFAIATKGLLNEVSRESLLLQVWEFPMSVIFFVDILLLTSNSMALKGQTFKMFSMQIVFCCCYFGISQCKFVFKPVMTESTMTRCIAVCLIAHLIRFLVGQIFEPTIFLIQIGSLLQYMSYFFRIV"
feature key: CDS
location: complement(11566..12642)
num qualifiers: 7
key: /note= value: "putative RAP2.8 protein gi|3695373"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.3"
key: /protein_id= value: "AAF26476.1"
key: /db_xref= value: "GI:6715649"
key: /translation= value: "MDLSLAPTTTTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQFGNFGFNFNFPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGSPLDHRNIVGSEPLVIDSVPVVPGRLTPVMLPPLPPPPSTAGKRLRLFGVNMECGNDYNQQEESWLVPRGEIGASSSSSSALRLNLSTDHDDDNDDGDDGDDDQFAKKGKSSLSLNFNP"
feature key: CDS
location: join(23221..24174,24244..24357,24412..24664,24743..25137,25226..25445,25527..25711,25783..25905,25994..26478,26564..26730,26814..26983,27074..27235,27320..27415,27505..28133,28314..28507,28592..28782,28862..30013,30112..30518,30604..30781)
num qualifiers: 7
key: /note= value: "similar to UFD1 protein emb|CAB10321.1; similar to ESTs gb|H36434, gb|AI996152.1"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.4"
key: /protein_id= value: "AAF26461.1"
key: /db_xref= value: "GI:6715634"
key: /translation= value: "MVMEDEPREATIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQVPPNKKHQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQFLKLTSFFLFSSTQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVRIKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERYIKSFKNYILIFVTTGHQISTDMSTCVTCRGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQVDIIVSACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKIYVVQDRLFFYFLHNLRLLRLYKSSSIMLFIRYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS"
feature key: CDS
location: complement(join(31084..31126,31223..31304,31341..31515,31635..31700,31790..31897,31984..32049,32133..32161,32249..32372))
num qualifiers: 7
key: /note= value: "putative inorganic pyrophosphatase gi|3510259; similar to ESTs gb|T42316, gb|AI994042.1, gb|AI994013.1, emb|Z29202"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.5"
key: /protein_id= value: "AAF26475.1"
key: /db_xref= value: "GI:6715648"
key: /translation= value: "MSEETKDNQRLQRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDCILFLQCSSLFISIDLSTNKKNENKEVAVNDFLPSESAVEAIQYSMDLYAEYILHTLRR"
feature key: CDS
location: complement(join(33694..34029,34103..35173,35269..35349,35432..35701,36326..36387,36512..36623,36725..36763))
num qualifiers: 7
key: /note= value: "putative late elongated hypocotyl emb|CAA07004; similar to ESTS gb|AI993521.1, gb|AA650979"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.6"
key: /protein_id= value: "AAF26474.1"
key: /db_xref= value: "GI:6715647"
key: /translation= value: "MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKFGKAHSFWFTFQLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKVSGDIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST"
feature key: CDS
location: complement(join(38600..38756,38838..38989,39111..39516,39915..40031,40377..40579))
num qualifiers: 7
key: /note= value: "similar to Medicago truncatula MtN2 gi|3193308; similar to EST gb|H77065"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.7"
key: /protein_id= value: "AAF26473.1"
key: /db_xref= value: "GI:6715646"
key: /translation= value: "MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDNDSKSPV"
feature key: CDS
location: complement(join(45150..45261,45343..45656,45719..45847,46075..46313,47448..47684,47777..48554,48638..48868))
num qualifiers: 7
key: /note= value: "putative pyruvate dehydrogenase E1 alpha subunit gi|2454182; similar to ESTs emb|Z48417, gb|AW039459.1, gb|T15146, emb|Z48416, gb|AF066871, gb|T76832, gb|AI996061.1"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.8"
key: /protein_id= value: "AAF26472.1"
key: /db_xref= value: "GI:6715645"
key: /translation= value: "MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPSSFLGSTRSLSLRRLNHSNATRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRSQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTVNNMKVAESSSEKVSRRVSRKPTVLLLLQRHLLDTNNV"
feature key: CDS
location: complement(join(49986..50039,50121..50333,50585..50656))
num qualifiers: 7
key: /note= value: "similar to acidic ribosomal protein p1 gi|2252857; similar to ESTs gb|T42111, gb|AI099979, gb|AA728491"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.9"
key: /protein_id= value: "AAF26471.1"
key: /db_xref= value: "GI:6715644"
key: /translation= value: "MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD"
feature key: CDS
location: join(51941..52048,52136..52432,52640..52885,53186..53326,53405..54196)
num qualifiers: 7
key: /note= value: "hypothetical protein"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.10"
key: /protein_id= value: "AAF26462.1"
key: /db_xref= value: "GI:6715635"
key: /translation= value: "MGKKNGSSSWLTAVKRAFRSPTKKDHSNDVEEDEEKKREKRRWFRKPATQESPVKSSGISPPAPQEDSLNVNSKPSPETAPSYATTTPPSNAGKPPSAVVPIATSASKTLAPRRIYYARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELEEERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR"
feature key: CDS
location: complement(57094..58680)
num qualifiers: 7
key: /note= value: "putative fatty acid elongase 3-ketoacyl-coA synthase 1 gi|4091810; similar to ESTs gb|T42377, gb|N96054, gb|T44368, gb|AI999379.1, emb|Z26005"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.11"
key: /protein_id= value: "AAF26470.1"
key: /db_xref= value: "GI:6715643"
key: /translation= value: "MERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLPLSEQLMFLISLVKRKMFKLKVKPYIPDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLWQIAFGSGFKCNSAVWKALRPVSTEEMTGNAWAGSIDQYPVKVVQ"
feature key: CDS
location: complement(join(59508..59665,61670..61826,63133..63513))
num qualifiers: 7
key: /note= value: "hypothetical protein"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.12"
key: /protein_id= value: "AAF26469.1"
key: /db_xref= value: "GI:6715642"
key: /translation= value: "MEKRSDSESVEILGDWDSPPPEERIVMVSVPTSPESDYARSNQPKEIESRVSDKETASASGEVAARRVLPPWMDPSYEWGGGKWKVDGRKNKNKKEKEKEKEEIIPFKEIIEALLGNSGDKVQQDNKVFEVAPSLHVVELRKTGDDTLEFHKVYFRFNLYQPVQLPLILFVVIRFSMLKIIHYHQFTMAHIKEFVCMWDTHLYKEITNLNIWDTLSSTLVLAIWTVNASHE"
feature key: CDS
location: complement(join(64100..64177,64272..64358,64453..64509,64603..64719,64812..64919,65033..65158,65265..65354,65435..65566,65809..65862,65964..66044,66152..66259,66380..66451,66537..66599,67026..67214))
num qualifiers: 7
key: /note= value: "similar to wpk4 protein kinase dbj|BAA34675; similar to ESTs dbj|AB015122, gb|AI997157.1"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.13"
key: /protein_id= value: "AAF26468.1"
key: /db_xref= value: "GI:6715641"
key: /translation= value: "MSGSRRKATPASRTRVGNYEMGRTLGEGSFAKVKYAKNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIAQQGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSAFSRQVREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFDEPNLMTLYKRVRICKAEFSCPPWFSQGAKRVIKRILEPNPITRISIAELLEDEWFKKGYKPPSFDQDDEDITIDDVDAAFSNSKECLVTEKKEKPVSMNAFELISSSSEFSLENLFEKQAQLVKKETRFTSQRSASEIMSKMEETAKPLGFNVRKDNYKIKMKGDKSGRKGQLSVATEVFEVAPSLHVVELRKTGGDTLEFHKVCDSFYKNFSSGLKDVVWNTDAAAEEQKQ"
feature key: CDS
location: complement(join(69831..69987,70534..70670,70743..71357,71644..71700))
num qualifiers: 7
key: /note= value: "similar to ataxia-telangiectasia group D protein pir|A49618"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.14"
key: /protein_id= value: "AAF26467.1"
key: /db_xref= value: "GI:6715640"
key: /translation= value: "MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHENLHQLQELVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMVRIIILIWLRSRLTSSSSSQRSEIKMERERNAGVMKKMSPTGTIQRLEFVGWYL"
feature key: CDS
location: join(72285..72371,72789..72865,72989..73097,73190..73442,73524..73585)
num qualifiers: 7
key: /note= value: "similar to SYT gi|2252866; similar to ESTs emb|F14390, gb|H36066, emb|F14391"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.15"
key: /protein_id= value: "AAF26463.1"
key: /db_xref= value: "GI:6715636"
key: /translation= value: "MQQQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPETGLGGNVGLRGGKQDGADGQGKDDGK"
feature key: CDS
location: complement(join(73807..73990,74036..74145))
num qualifiers: 7
key: /note= value: "similar to stress-induced protein OZI1 precursor pir|S59544; similar to EST gb|AI995719.1"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.16"
key: /protein_id= value: "AAF26466.1"
key: /db_xref= value: "GI:6715639"
key: /translation= value: "MASGGKAKYIIGALIGSFGISYIFDKVISDNKIFGGKDDLNGYLLVKISGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVKTRPE"
feature key: CDS
location: join(75335..76249,76516..76653,76733..76982,77015..77148)
num qualifiers: 7
key: /note= value: "putative reverse transcriptase gb|AAD17395"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.17"
key: /protein_id= value: "AAF26464.1"
key: /db_xref= value: "GI:6715637"
key: /translation= value: "MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPSTTAVETTKPQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRDRFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDEHGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSWPSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA"
feature key: CDS
location: complement(join(82723..82738,82751..83373,83586..84581))
num qualifiers: 7
key: /note= value: "putative cytochrome P450 gi|3831440"
key: /codon_start= value: 1
key: /evidence= value: not_experimental
key: /product= value: "T25K16.18"
key: /protein_id= value: "AAF26465.1"
key: /db_xref= value: "GI:6715638"
key: /translation= value: "MFSLNMRTEIESLWVFALASKFNIYMQQHFASLLVAIAITWFTITIVFWSTPGGPAWGKYFFTRRFISLDYNRKYKNLIPGPRGFPLVGSMSLRSSHVAHQRIASVAEMSNAKRLMAFSLGDTKVVVTCHPAVAKEILNSSVFADRPVDETAYGLMFNRAMGFAPNGTYWRTLRRLGSNHLFNPKQIKQSEDQRRVIATQMVNAFARNPKSACAVRDLLKTASLCNMMGLVFGREYELESNNNLESECLKGLVEEGYDLLGTLNWTDHLPWLAGLDFQQIRFRCSQLVPKVNLLLSRIIHEQRAATGNFLDMLLSLQGSEKLSESDMVAVLWEMIFRGTDTVAVLVEWVLARIVMHPKVQLTVHDELDRVVGRSRTVDESDLPSLTYLTAMIKEVLRLHPPGPLLSWARLSITDTSVDGYHVPAGTTAMVNMWAIARDPHVWEDPLEFKPERFVAKEGEAEFSVFGSDLRLAPFGSGKRVCPGKNLGLTTVSFWVATLLHEFEWLPSVEANPPDLSEVLRLSCEMACPLIVNVSSRRKIIAWMF"
***Record from protein_refseq.gb with the RecordParser
sequence length: 182
locus: NP_034640
definition: interferon beta, fibroblast [Mus musculus].
accession: ['NP_034640']
reference title: structure and expression of a cloned cdna for mouse interferon-beta
feature key: source
location: 1..182
num qualifiers: 4
key: /organism= value: "Mus musculus"
key: /db_xref= value: "taxon:10090"
key: /chromosome= value: "4"
key: /map= value: "4 42.6 cM"
feature key: Protein
location: 1..182
num qualifiers: 1
key: /product= value: "interferon beta, fibroblast"
feature key: sig_peptide
location: 1..21
num qualifiers: 0
feature key: Region
location: 1..182
num qualifiers: 3
key: /region_name= value: "Interferon alpha/beta domain"
key: /db_xref= value: "CDD:pfam00143"
key: /note= value: "interferon"
feature key: mat_peptide
location: 22..182
num qualifiers: 1
key: /product= value: "ifn-beta"
feature key: Region
location: 56..170
num qualifiers: 3
key: /region_name= value: "Interferon alpha, beta and delta."
key: /db_xref= value: "CDD:IFabd"
key: /note= value: "IFabd"
feature key: CDS
location: 1..182
num qualifiers: 4
key: /gene= value: "Ifnb"
key: /db_xref= value: "LocusID:15977"
key: /db_xref= value: "MGD:MGI:107657"
key: /coded_by= value: "NM_010510.1:21..569"
***Record from extra_keywords.gb with the RecordParser
sequence length: 154329
locus: DMBR25B3
definition: Drosophila melanogaster BAC clone BACR25B3.
accession: ['AL138972']
reference title: Sequencing the distal X chromosome of Drosophila melanogaster
reference title: Direct Submission
feature key: source
location: 1..154329
num qualifiers: 3
key: /organism= value: "Drosophila melanogaster"
key: /db_xref= value: "taxon:7227"
key: /clone= value: "BAC BACR25B3"
feature key: gene
location: complement(22148..27773)
num qualifiers: 2
key: /gene= value: "EG:BACR25B3.11"
key: /note= value:
feature key: CDS
location: complement(join(22148..22299,22375..22791,22860..23560,23630..24555,24616..24888,25024..25178,26677..27009,27623..27773))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.11"
key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''105.71''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:24292..24549, target:SWISS-PROT::P98160:3713..3628, score:''201.00''), (query:24016..24291, target:SWISS-PROT::P98160:3815..3724, score:''139.00''), (query:23857..24006, target:SWISS-PROT::P98160:3866..3817, score:''99.00''), (query:24052..24327, target:SWISS-PROT::P98160:4059..3968, score:''143.00''), (query:24046..24312, target:SWISS-PROT::P98160:4341..4253, score:''116.00''), (query:23806..23901, target:SWISS-PROT::P98160:4177..4146, score:''76.00''), (query:23203..23382, target:SWISS-PROT::P98160:4062..4003, score:''116.00''), (query:22523..22777, target:SWISS-PROT::P98160:4288..4204, score:''112.00''), (query:22235..22300, target:SWISS-PROT::P98160:4358..4337, score:''64.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM03359.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03359 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:25024..25235, target:EMBL::AA801707:438..227, score:''1024.00''), (query:24851..24898, target:EMBL::AA801707:476..429, score:''204.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD08615.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08615 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:24629..24727, target:EMBL::AA264808:99..1, score:''495.00''), (query:24417..24566, target:EMBL::AA264808:250..101, score:''687.00''), (query:24048..24420, target:EMBL::AA264808:618..246, score:''1847.00''), (query:23986..24036, target:EMBL::AA264808:678..628, score:''237.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''HL02745.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02745 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23944..24045, target:EMBL::AA697546:103..2, score:''510.00''), (query:23630..23943, target:EMBL::AA697546:416..103, score:''1570.00''), (query:23419..23561, target:EMBL::AA697546:558..416, score:''715.00''), (query:23306..23417, target:EMBL::AA697546:670..559, score:''524.00''), (query:23280..23316, target:EMBL::AA697546:695..659, score:''167.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GM08137.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08137 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23235..23278, target:EMBL::AA696682:44..1, score:''139.00''), (query:22986..23251, target:EMBL::AA696682:294..29, score:''1321.00'')), method:''blastn'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72284.1"
key: /db_xref= value: "GI:6946669"
key: /translation= value: "MACNCNQSMIYQSNERRDYNCPGAPQYPYNRFKGGVSLKDTPCMVLYICADFKSSKLSSAKPIISGPATTRAPAISYVCQPNDFKCVSHPHTCVRANMVCDGIYDCTDHSDEFNCIAGKGSGKSESNSGSGSFKRWKKSPEQGRRSLAKAVKNRKLRKRSFAKSRDYSLKLDDQSSNLRAGESTDVECYSSDDTYTDVVWERSDGAPLSNNVRQVGNRLVISNVSPSDAGNYVCKCKTDEGDLYTTSYKLEVEDQPHELKSSKIVYAKVGANADLQCGADESRQPTYRWSRQYGQLQAGRSLMNEKLSLDSVQANDAGTYICTAQYADGETADFPNILVVTGAIPQFRQEPRSYMSFPTLPNSSFKFNFELTFRPENGDGLLLFNGQTRGSGDYIALSLKDRYAEFRFDFGGKPMLVRAEEPLALNEWHTVRVSRFKRDGYIQVDEQHPVAFPTLQQIPQLDLIEDLYIGGVPNWELLPADAVSQQVGFVGCISRLTLQGRTVELIREAKYKEGITDCRPCAQGPCQNKGVCLESQTEQAYTCICQPGWTGRDCAIEGTQCTPGVCGAGRCENTENDMECLCPLNRSGDRCQYNEILNEHSLNFKGNSFAAYGTPKVTKVNITLSVRPASLEDSVILYTAESTLPSGDYLALVLRGGHAELLINTAARLDPVVVRSAEPLPLNRWTRIEIRRRLGEGILRVGDGPERKAKAPGSDRILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGCISRLYNFQKPVNLLADIKDAANIQSCGETNMIGGDEDSDNEPPVPPPTPDVHENELQPYAMAPCASDPCENGGSCSEQEDVAVCSCPFGFSGKHCQEHLQLGFNASFRGDGYVELNRSHFQPALEQSYTSMGIVFTTNKPNGLLFWWGQEAGEEYTGQDFIAAAVVDGYVEYSMRLDGEEAVIRNSDIRVDNGERHIVIAKRDENTAILEVDRMLHSGETRPTSKKSMKLPGNVFVGGAPDLEVFTGFRYKHNLNGCIVVVEGETVGQINLSSAAVNGVNANVCPA"
feature key: gene
location: complement(29926..33978)
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.10"
feature key: CDS
location: complement(join(29926..30108,30270..30519,30617..31076,31197..31591,31659..31836,32324..32634,32686..33289,33533..33713,33817..33978))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.10"
key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''98.50''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:33540..33716, target:SWISS-PROT::P98160:2716..2658, score:''113.00''), (query:32859..32963, target:SWISS-PROT::P98160:3341..3307, score:''63.00''), (query:33150..33215, target:SWISS-PROT::P98160:3530..3509, score:''73.00''), (query:32973..33089, target:SWISS-PROT::P98160:3588..3550, score:''71.00''), (query:32358..32567, target:SWISS-PROT::P98160:3650..3581, score:''107.00''), (query:31222..31323, target:SWISS-PROT::P98160:2620..2587, score:''80.00''), (query:31489..31572, target:SWISS-PROT::P98160:3387..3360, score:''72.00''), (query:31495..31593, target:SWISS-PROT::P98160:3575..3543, score:''60.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM02481.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02481 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:30008..30036, target:EMBL::AA695253:29..1, score:''145.00''), (query:29549..30004, target:EMBL::AA695253:487..32, score:''2262.00'')), method:''blastn'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72285.1"
key: /db_xref= value: "GI:6946670"
key: /translation= value: "MFLATLDTNDPTDIGTEDPVLTQIIVSIQKPEITIVPVGGSMTLSCSGRMRWSNSPVIVNWYKENSRLPENVEVQGGNLYLYDLQVSDSGVYICQAVNNETASVFKDTVSITITKKDQLSPAEIVNLPSHVTFEEYVNNEIICEVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSPRKSDEGRYRCQAENDQNRDEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTSVASLRYDWSHNGRSLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNIDRREEQPFGVLMRMMILTDSLINHSNKPIIESLEQNILIIQGEDYSITCEASGSPYPSIKWAKVHDFMPENVHISGNVLTIYGARFENRGVYSCVAENDHGSDLSSTSIDIEPRERPSVKIVSAPLQTFSVGAPASLYCTVEGIPDPTVEWVRVDGQPLSPRHKIQSPGYMVIDDIQLEDSGDYECRAKNIVGEATGVATITVQEPTLVQIIPDNRDLRLTEGDELSLTCVGSGVPNPEVEWVNEMALKRDLYSPPSNTAILKIYRVTKADAGIYTCHGKNEAGSDEAHVRVEVQERRGDIGGVDDDSDRDPINYNPPQQQNPGIHQPGSNQLLATDIGDNVTLTCDMFQPLNTRWERVDGAPLPRNAYTIKNRLEIVRVEQQNLGQYRCNGIGRDGNVKTYFVKELVLMPLPRIRFYPNIPLTVEAGQNLDVHCQVENVRPEDVHWSTDNNRPLPSSVRIVGSVLRFVSITQAAAGEYRCSAFNQYGNRSQIARVAVKKPADFHQVPQSQLQRHREGENIQLQCTVTDQYGVRAQDNVEFNWFRDDRRPLPNNARTDSQILVLTNLRPEDAGRYICNSYDVDRGQQLPEVSIDLQVLSE"
feature key: gene
location: complement(36119..56153)
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.1"
feature key: CDS
location: complement(join(36119..37213,37281..39517,39656..40042,40345..40434,40519..40612,40681..40814,41546..41620,41855..42085,42188..42415,42751..42876,43604..43837,44241..44438,44812..44928,45148..45233,45661..45793,45976..46125,46518..46688,47222..47315,47683..47831,48411..48878,49437..49562,49763..49876,49971..50102,50319..50441,50827..50937,52849..52966,56031..56153))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.1"
key: /note= value: "/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN PRECURSOR (LRP)'', species:''Caenorhabditis elegans'', ranges:(query:50831..50941, target:SWISS-PROT::Q04833:1221..1185, score:''95.00''), (query:50840..51025, target:SWISS-PROT::Q04833:2865..2804, score:''102.00''), (query:50828..50935, target:SWISS-PROT::Q04833:3788..3753, score:''119.00''), (query:50323..50394, target:SWISS-PROT::Q04833:3706..3683, score:''77.00''), (query:50326..50433, target:SWISS-PROT::Q04833:1263..1228, score:''120.00''), (query:49948..50079, target:SWISS-PROT::Q04833:2917..2874, score:''88.00''), (query:49432..49587, target:SWISS-PROT::Q04833:4085..4034, score:''102.00''), (query:49429..49560, target:SWISS-PROT::Q04833:3915..3872, score:''97.00''), (query:48622..48720, target:SWISS-PROT::Q04833:1302..1270, score:''99.00''), (query:47698..47799, target:SWISS-PROT::Q04833:3996..3963, score:''88.00''), (query:47686..47775, target:SWISS-PROT::Q04833:3835..3806, score:''59.00''), (query:47692..47787, target:SWISS-PROT::Q04833:4041..4010, score:''83.00''), (query:47229..47315, target:SWISS-PROT::Q04833:3742..3714, score:''88.00''), (query:47220..47312, target:SWISS-PROT::Q04833:3829..3799, score:''67.00''), (query:47232..47318, target:SWISS-PROT::Q04833:3866..3838, score:''78.00''), (query:46552..46656, target:SWISS-PROT::Q04833:1344..1310, score:''95.00''), (query:46543..46650, target:SWISS-PROT::Q04833:3951..3916, score:''98.00''), (query:45983..46129, target:SWISS-PROT::Q04833:2870..2822, score:''82.00''), (query:45971..46096, target:SWISS-PROT::Q04833:4089..4048, score:''82.00''), (query:45678..45764, target:SWISS-PROT::Q04833:3666..3638, score:''80.00''), (query:45128..45238, target:SWISS-PROT::Q04833:94..58, score:''100.00''), (query:45158..45268, target:SWISS-PROT::Q04833:3990..3954, score:''80.00''), (query:44263..44379, target:SWISS-PROT::Q04833:85..47, score:''77.00''), (query:44251..44367, target:SWISS-PROT::Q04833:3995..3957, score:''100.00''), (query:43605..43688, target:SWISS-PROT::Q04833:2994..2967, score:''84.00''), (query:42764..42877, target:SWISS-PROT::Q04833:2951..2914, score:''77.00''), (query:42180..42377, target:SWISS-PROT::Q04833:260..195, score:''148.00''), (query:42234..42419, target:SWISS-PROT::Q04833:3199..3138, score:''106.00''), (query:39807..40013, target:SWISS-PROT::Q04833:2901..2833, score:''167.00''), (query:39645..39857, target:SWISS-PROT::Q04833:3138..3068, score:''151.00''), (query:39846..40046, target:SWISS-PROT::Q04833:3241..3175, score:''132.00''), (query:39654..39866, target:SWISS-PROT::Q04833:3913..3843, score:''201.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2 PRECURSOR (MEGALIN) (GLYCOPROTEIN 330)'', species:''Homo sapiens (Human)'', ranges:(query:50834..50935, target:SWISS-PROT::P98164:2733..2700, score:''99.00''), (query:50840..50947, target:SWISS-PROT::P98164:3063..3028, score:''94.00''), (query:50831..50926, target:SWISS-PROT::P98164:3918..3887, score:''102.00''), (query:50326..50433, target:SWISS-PROT::P98164:1222..1187, score:''107.00''), (query:50302..50394, target:SWISS-PROT::P98164:3762..3732, score:''91.00''), (query:49773..49904, target:SWISS-PROT::P98164:2939..2896, score:''90.00''), (query:49438..49578, target:SWISS-PROT::P98164:217..171, score:''116.00''), (query:49429..49545, target:SWISS-PROT::P98164:3796..3758, score:''108.00''), (query:48622..48720, target:SWISS-PROT::P98164:3544..3512, score:''94.00''), (query:48595..48708, target:SWISS-PROT::P98164:3720..3683, score:''86.00''), (query:47701..47814, target:SWISS-PROT::P98164:2817..2780, score:''90.00''), (query:47692..47799, target:SWISS-PROT::P98164:3674..3639, score:''60.00''), (query:47217..47366, target:SWISS-PROT::P98164:3716..3667, score:''96.00''), (query:46543..46647, target:SWISS-PROT::P98164:1101..1067, score:''107.00''), (query:46552..46656, target:SWISS-PROT::P98164:3873..3839, score:''84.00''), (query:45989..46126, target:SWISS-PROT::P98164:3832..3787, score:''98.00''), (query:45149..45274, target:SWISS-PROT::P98164:2775..2734, score:''99.00''), (query:44780..44893, target:SWISS-PROT::P98164:268..231, score:''76.00''), (query:44813..44905, target:SWISS-PROT::P98164:1223..1193, score:''73.00''), (query:44251..44361, target:SWISS-PROT::P98164:3630..3594, score:''119.00''), (query:43602..43700, target:SWISS-PROT::P98164:179..147, score:''97.00''), (query:43674..43781, target:SWISS-PROT::P98164:191..156, score:''90.00''), (query:43584..43685, target:SWISS-PROT::P98164:1107..1074, score:''89.00''), (query:42758..42865, target:SWISS-PROT::P98164:1264..1229, score:''79.00''), (query:42204..42413, target:SWISS-PROT::P98164:2810..2741, score:''136.00''), (query:42189..42377, target:SWISS-PROT::P98164:3027..2965, score:''125.00''), (query:42186..42293, target:SWISS-PROT::P98164:3110..3075, score:''109.00''), (query:42198..42389, target:SWISS-PROT::P98164:3584..3521, score:''137.00''), (query:42309..42422, target:SWISS-PROT::P98164:3793..3756, score:''95.00''), (query:39654..39791, target:SWISS-PROT::P98164:63..18, score:''132.00''), (query:39786..40049, target:SWISS-PROT::P98164:1183..1096, score:''230.00''), (query:39657..39890, target:SWISS-PROT::P98164:3109..3032, score:''200.00''), (query:39780..39983, target:SWISS-PROT::P98164:3756..3689, score:''194.00''), (query:39618..39761, target:SWISS-PROT::P98164:3845..3798, score:''105.00''), (query:39651..39779, target:SWISS-PROT::P98164:3964..3922, score:''128.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM06086.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06086 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:50852..51290, target:EMBL::AA802674:672..234, score:''2195.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''SD04592.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04592 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:37280..37708, target:EMBL::AI532939:429..1, score:''2136.00''), (query:37097..37217, target:EMBL::AI532939:545..425, score:''569.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH03622.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03622 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:36446..37075, target:EMBL::AI063674:1..630, score:''3150.00'')), method:''blastn'', version:''1.4.9''); EST embl|AA802674|AA802674 comes from the 5' UTR"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72286.1"
key: /db_xref= value: "GI:6946671"
key: /translation= value: "MLLLQLLLQLLLLGKLLLGKTPPTVFGFRLLFAAFRFPLSLHFPHRMHDHFFVRGDTHSCGWKNSTTFTIRISAIYRYLNQCQANEFRCNNGDCIDARKRCNNVSDCSEGEDENEECPAACSGMEYQCRDGTRCISVSQQCDGHSDCSDGDDEEHCDGIVPKLRYTCPKGKFTCRDLSCISIVHRCDGRADCPNDRSDEEGCPCLYDKWQCDDGTCIAKELLCNGNIDCPEDISDERYCEGGYDSEECRFDEFHCGTGECIPMRQVCDNIYDCNDYSDEVNCVEGEEEDRVGIPIGHQPWRPASKHDDWLHEMDTSEYQVYQPSNVYEKANSQNPCASNQFRCTTSNVCIPLHLRCDGFYHCNDMSDEKSCEQYQRHTTTRRPLTLATPTSRITTQGPGLLERRNTTTATEASRWPWATKTTTIATTTSNPITTVGVANSPPQTCLENIEFACHNRDCISIESVCDGIPDCGRNEDEDDALCKCSGDKYKCQRGGGCIPKSQVCDGKPQCHDRSDESACHLHGRLNKTRLGVKCLESQYQCGDGSCISGYKRCNGIHDCADASDEYNCIYDYEDTYDTDPNNNPLNECDILEFECDYSQCLPLEKKCDGYADCEDMSDELECQSYTDHCLESEFECDSYCLPRDQLCNGIPNCQDGSDERNCTFCREDAYLCNTGECVADNQRCNGIADCADGSDERHCARIYCPPNKLACNGTCVSRRIKCDGIRDCLDGYDEMYCPETNNHYPTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSDEELSVCFGTATTRLKPSDCSPEQFYCDESCYNRSVRCNGHVDCSDGSDEVGCSLPCPQHQCPSGRCYTESERCDRHRHCEDGSDEANCTAILCKDNEFLCFDRQFCINATQQCDGYYDCRDFSDEQNCIGCYANQFRCNNGDCVSGSAPCNGYSECSDHSDELNCGGTQECLPNQFRCNSGQCVSSSVRCNGRTDCQDSSDEQNCGHRHTEVSQGLETTGVFTTSTTSTTAMTPLRIICPPTSFKCENGPCISLGLKCNGRVDCPYDGSDEADCGQISNDIDPADSNDRRPNQLNLKTYPDSQIIKESREVIFRCRDEGPARAKVKWSRPGGRPLPPGFTDRNGRLEIPNIRVEDAGTYVCEAVGYASYIPGQQVTVNLNVERSWGENKYEEIRSNRIRYGTVPHIDLEFFGLDNDVGSRPESACTEYQATCMNGECIDKSSICDGNPDCSDASDEQSCSLGLKCQPNQFMCSNSKCVDRTWRCDGENDCGDNSDETSCDPEPSGAPCRYNEFQCRSGHCIPKSFQCDNVPDCTDGTDEVGCMAPLPIRPPPQSVSLLEYEVLELTCVATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLRCPDMRPQDSGAYSCEIINTRGTHFVNPDTIVTVRPVRTDVCEAGFFNMLARKAEECVQCFCFGVAKACDSANLFTYAIHPPILSHRVVSVELSPLRQIVINEAAPGQDLLTLLHGVQFRATNVHFSGRETPYLALPADYMGNQLKSYGGNLRYEVNYRGSGRPVNGPDVIITGNRFTLTYRVRTQPGQNNRVSIPFVPGGWQKPDGRKASREEIMMILANVDNILIRLGYLDSTAREVDLINIALDSAGTADKGLGSASLVEKCQCPPGYVGDSCESCASGYVRQPGGPWLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGSNNFASGCQQSPDGDVVCRCNEGYTGRRCEQCAAGYQGNPLAAGGICRRIPDTSCNVDGTYSVHSNGTCQCKDSVIGEQCDTCKSKSFHLNSFTYTGCIECFCSGVGLDCDSSTWYRDQVTSTFGRSRVDHGFVLVTNYMQPTPDTVPVSMAAEPNALSFIGSADQSGNTLYWSLPAAFLGNKLSSYGGKLTYTLSYSPLPNGIMSRNSAPDVVIKSGEDLRLIHYRKSQVVPSVANTYSVEIKESAWQRGDEVVANREHVLMALSDITAIYIKATYTTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPEGYLGLSCEQCAPGYARDPEGGIYLGLCRPCECNGHSKYCNSDTGDCEECSDNTEGPSCERCAAGYVGDATRGTIYDCQPDEGYPIPSPPAPGNQTLECTAYCQIEGIYDCRGNECLCKRNVIGDQCDQCRPGTYGLSAQNQDGCKECYCSGLASQCRSAALYRQLIPVDFILNAPLITDESGAVQDTENLIPDISRNMYTYTHTSYLPKYWSLRGSVLGNQLFSYGGRLSYSLIVESYGNYERGHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTRQDRESARPASRSDFMTVLSDLQHILIRATPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPSGYVGTSCESCAPLHYRDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKGDRCREIGE"
feature key: gene
location: complement(70720..75241)
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.2"
feature key: CDS
location: complement(join(70720..70988,71424..71621,72605..72768,72839..73016,73086..73559,75217..75241))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.2"
key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''41.82''); /prediction=(method:''genscan'', version:''1.0'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72287.1"
key: /db_xref= value: "GI:6946672"
key: /translation= value: "MANSKVVAHDESLQGINDSEWQLMGDDIDDGLLDDVDETLKPMETKSEEEDLPTGNWFSQSVHRVRRSINRLFGSDDNQERGRRQQRERSQRNRDAINRQKELRRRQKEDHNRWKQMRMERQLEKQRLVKRTNHVVFNRATDPRKRASDLYDENEASGYHEEDTTLYRTYFVVNEPYDNEYRDRESVQFQNLQKLLDDDLRNFFHSNYEGNDDEEQEIRSTLERVEPTNDNFKIRVQLRIELPTSVNDFGSKLQQQLNVYNRIENLSAATDGVFSFTESSDIEEEAIDVTLPQEEVEGSGSDDSSCRGDATFTCPRSGKTICDEMRCDREIQCPDGEDEEYCNYPNVCTEDQFKCDDKCLELKKRCDGSIDCLDQTDEAGCINAPEPEPEPEPEPEPEPESEPEAEPEPEPEPEPESEPEQEPEPQVPEANGKFY"
feature key: gene
location: 121867..127124
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.3"
feature key: CDS
location: join(121867..122046,122174..122630,123672..123823,124063..124320,124392..124688,124755..125018,125094..125254,125317..125576,126793..127124)
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.3"
key: /note= value: "/prediction=(method:''genscan'', version:''1.0'', score:''174.91''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''PROBABLE G PROTEIN-COUPLED RECEPTOR C13B9.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:123671..123775, target:SWISS-PROT::Q09460:107..141, score:''80.00''), (query:123743..123829, target:SWISS-PROT::Q09460:235..263, score:''72.00''), (query:124072..124332, target:SWISS-PROT::Q09460:265..351, score:''161.00''), (query:124392..124691, target:SWISS-PROT::Q09460:349..448, score:''206.00''), (query:124755..124958, target:SWISS-PROT::Q09460:448..515, score:''123.00''), (query:124764..125027, target:SWISS-PROT::Q09460:454..541, score:''108.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''CALCITONIN RECEPTOR PRECURSOR (CT-R)'', species:''Sus scrofa (Pig)'', ranges:(query:124165..124236, target:SWISS-PROT::P25117:191..214, score:''54.00''), (query:124392..124580, target:SWISS-PROT::P25117:233..295, score:''118.00''), (query:124725..124886, target:SWISS-PROT::P25117:318..371, score:''127.00'')), method:''blastx'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72288.1"
key: /db_xref= value: "GI:6946673"
key: /translation= value: "MGAGNRKSETKTKTEAEIEIEMERDQFSIAANACMSMGPMLISKDKAPCSGGRVRHADSLHIYYAVDGKMTLLSNILDCGGCISAQRFTRLLRQSGSSGPSPSAPTAGTFESKSMLEPTSSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPDSDTEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTEFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLNGRKPSSASIVMIHEPQQRQRLMPRLQNKAREKGKDRVEKTDAEAEPDPTISHIHSKEAGSARSRTRGSKWIMGICFRGQMCDAGLAKDAANIHDVANAADVDACSGSNNNYHNINNNNGSQNNNSIHCNHRDDDKVKGESQSDFKEPSNTNAESLVHLALFTAHTSNTQNNTHRNTIFTPIRRRNCS"
feature key: gene
location: complement(128489..129414)
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.4"
feature key: CDS
location: complement(join(128489..128715,128777..129140,129196..129313,129374..129414))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.4"
key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''61.35''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''VACUOLAR PROTON-ATPASE SUBUNIT D'', species:''Oryctolagus cuniculus (Rabbit)'', ranges:(query:129190..129324, target:SPTREMBL::O97755:55..11, score:''130.00''), (query:128778..129176, target:SPTREMBL::O97755:174..42, score:''472.00''), (query:128546..128716, target:SPTREMBL::O97755:231..175, score:''169.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''VACUOLAR ATP SYNTHASE SUBUNIT D (EC 3.6.1.34) (V-ATPASE D SUBUNIT) (V- ATPASE 28 KD ACCESSORY PROTEIN)'', species:''Bos taurus (Bovine)'', ranges:(query:129190..129324, target:SWISS-PROT::P39942:55..11, score:''130.00''), (query:128778..129176, target:SWISS-PROT::P39942:174..42, score:''471.00''), (query:128546..128716, target:SWISS-PROT::P39942:231..175, score:''173.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GH28048.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28048 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI517334:233..112, score:''412.00''), (query:128777..129145, target:EMBL::AI517334:597..229, score:''1251.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH07112.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07112 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI108302:223..102, score:''412.00''), (query:128777..129145, target:EMBL::AI108302:587..219, score:''1251.00''), (query:128636..128716, target:EMBL::AI108302:667..587, score:''243.00'')), method:''blastn'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72289.1"
key: /db_xref= value: "GI:6946674"
key: /translation= value: "MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQVMKEAAFSLAEVKFTTGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFYRLKKIQDKKREARKASDKLRAEQRLLGQMAEAQEVQNILDEDGDEDLLF"
feature key: gene
location: 132240..132926
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.5"
feature key: CDS
location: 132240..132926
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.5"
key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''48.06''); /prediction=(method:''genscan'', version:''1.0'', score:''132.90''); /match=(desc:''N-ACETYLTRANSFERASE'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:132249..132326, target:SPTREMBL::Q94521:60..85, score:''64.00''), (query:132600..132842, target:SPTREMBL::Q94521:171..251, score:''105.00'')), method:''blastx'', version:''1.4.9''); EST embl|AI063093|AI063093 comes from the 3' UTR"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72290.1"
key: /db_xref= value: "GI:6946675"
key: /translation= value: "MEYKMIAPEHSEQVMEHLRRNFFADEPLNKAAGLCQNGSSCPALEAHCAEAIQHRMSVMAVDAKEKDTLKIVGVVLNGILKPGDTAKALSKLDCNDDADFRKIFDLLHRHNLKHNLFEHFDVDCMFDVRILSVDSCYRGQGIANELVKRSVAVAKKNGFRLLKADATGIFSQKIFRSHGFEVFSEQPYSKYTDENGKVILPVEAPHIKLQQLYKAICADDQDEKKQSL"
feature key: gene
location: complement(133492..134407)
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.6"
feature key: CDS
location: complement(join(133492..133595,133663..133748,133867..134135,134198..134407))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.6"
key: /note= value: "/prediction=(method:''genscan'', version:''1.0'', score:''119.22''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LD41675.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD41675 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:134192..134531, target:EMBL::AI515958:340..1, score:''1691.00''), (query:133879..134139, target:EMBL::AI515958:591..331, score:''1305.00'')), method:''blastn'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72291.1"
key: /db_xref= value: "GI:6946676"
key: /translation= value: "MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGEEGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDERRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEVCKRNVLEKFGYAGHYVVLCGYDMAAQKLFYHNPEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE"
feature key: gene
location: 135479..136829
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.7"
feature key: CDS
location: join(135479..135749,135961..136586,136641..136829)
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.7"
key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''66.07''); /prediction=(method:''genscan'', version:''1.0'', score:''145.64''); /match=(desc:''HYPOTHETICAL 40.4 KD TRP-ASP REPEATS CONTAINING PROTEIN C14B1.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:135548..135748, target:SWISS-PROT::Q17963:39..105, score:''120.00''), (query:135957..136586, target:SWISS-PROT::Q17963:105..314, score:''899.00''), (query:136641..136823, target:SWISS-PROT::Q17963:315..375, score:''219.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD30385.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD30385 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:135288..135749, target:EMBL::AA950546:102..563, score:''2301.00''), (query:135956..136047, target:EMBL::AA950546:559..650, score:''442.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD10938.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10938 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:136108..136288, target:EMBL::AA392005:776..596, score:''212.00'')), method:''blastn'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72292.1"
key: /db_xref= value: "GI:6946677"
key: /translation= value: "MVPIGAVHGGHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSDT"
feature key: gene
location: 145403..147087
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.8"
feature key: CDS
location: join(145403..146203,146515..147087)
num qualifiers: 5
key: /gene= value: "EG:BACR25B3.8"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72293.1"
key: /db_xref= value: "GI:6946678"
key: /translation= value: "MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEYGQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTRGDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTGALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLITYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSFDNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVVHSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYMYVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKDVRVLETV"
feature key: gene
location: complement(148860..152785)
num qualifiers: 1
key: /gene= value: "EG:BACR25B3.9"
feature key: CDS
location: complement(join(148860..148905,148966..149462,149546..151809,151881..152032,152106..152785))
num qualifiers: 6
key: /gene= value: "EG:BACR25B3.9"
key: /note= value: "/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''HYPOTHETICAL 135.8 KD PROTEIN'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:152096..152785, target:SPTREMBL::Q9XZ29:230..1, score:''1147.00''), (query:151882..152043, target:SPTREMBL::Q9XZ29:277..224, score:''250.00''), (query:149546..151816, target:SPTREMBL::Q9XZ29:1032..276, score:''3735.00''), (query:148953..149465, target:SPTREMBL::Q9XZ29:1202..1032, score:''890.00''), (query:148863..148907, target:SPTREMBL::Q9XZ29:1212..1198, score:''76.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD21815.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21815 5prime similar to L19117: Drosophila melanogaster (chromosome X 3A6-8) kinesin-like protein of 3A (klp3A) mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:152482..152787, target:EMBL::AA816942:460..155, score:''1485.00''), (query:152401..152483, target:EMBL::AA816942:540..458, score:''397.00'')), method:''blastn'', version:''1.4.9'')"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72294.1"
key: /db_xref= value: "GI:6946679"
key: /translation= value: "MSSEDPSCVAVALRVRPLVQSELDRGCRIAVERSADGAPQVTVNRNESYTYNYVFDIDDSQKDLFETCVQAKVKKLLNGYNVTILAYGQTGSGKTYTMGTAFNGVLDDHVGVIPRAVHDIFTAIAEMQSEFRFAVTCSFVELYQEQFYDLFSSKTRDKATVDIREVKNRIIMPGLTELVVTSAQQVTDHLIRGSAGRAVAATAMNETSSRSHAIFTLTLVATKLDGKQSVTTSRFNLVDLAGSERCSKTLASGDRFKEGVNINKGLLALGNVINALGSGQAAGYIPYRQSKLTRLLQDSLGGNSITLMIACVSPADYNVAETLSTLRYADRALQIKNKPVVNLDPHAAEVNMLKDVIQKLRVELLSGGKMSSSLISAVGAAGLGAIPCEESLAGSMANAAEIQRLKEQVRTLQDRNRKLQQELHQSLLDLTEKEMRAHIAEQAHDKLRSHVSELKNKLDQREQAQFGNENTNGDNEMRDFSLLVNRVHVELQRTQEELESQGHESRQRLSSRSHTEGGESGGDEVHEMLHSHSEEYTNKQMNFAGELRNINRQLDLKQELHERIMRNFSRLDSDDEDVKLRLCNQKIDDLEAERRDLMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLITQANLLKIRDKEREKIQNLSTEIRTMKESKVKLIRAMRGESEKFRQWKMVREKELTQLKSKDRKMQSEIVRQQTLHSKQRQVLKRKCEEALAANKRLKDALERQASAQAQRHKYKDNGGSAAGSSNANAKTDSWVDRELEIILSLIDAEHSLEQLMEDRAVINNHYHLLQQEKTSDPAEAAEQARILASLEEELEMRNAQISDLQQKVCPTDLDSRIRSLAEGVQSLGESRTVSKQLLKTLVQQRRLQASSLNEQRTTLDELRAQLLDAQQQEDAASKRLRLLQSQHEEQMLAQQRAYEEKVSVLIRTANQRWAEARSPAEDQQRNQILEELLSSREALQQELDKLRAKNKSKSKAVKSEPQDLDDSFQIVDGNETVVLSDVSDDPDWVPSTSKSKRIQSDSRNVISPPEKQDANVTSLGNSSIQSLNSTSATEDGKRCKGCKCRTKCTTKRCGCLSGNNACSETCVCKSNCRNPLNLKDHASQCGDGDGQKDETEDADKSDDDGDDEPQTSKENAVKFVTPEAPGKVVASPKQTLQEPKAAATPLMNSNVVEDINGPKLAKMSGLAFDTPKRKFF"
feature key: gene
location: join(153490..154269,AL121804.2:41..610,AL121804.2:672..1487)
num qualifiers: 1
key: /gene= value: "EG:BACR7C10.3"
feature key: CDS
location: join(153490..154269,AL121804.2:41..610,AL121804.2:672..1487)
num qualifiers: 5
key: /gene= value: "EG:BACR7C10.3"
key: /codon_start= value: 1
key: /protein_id= value: "CAB72295.1"
key: /db_xref= value: "GI:6946680"
key: /translation= value: "MEEEAPRFNVLEEAFNGNGNGCANVEATQSAILKVLTRVNRFQMRVRKHIEDNYTEFLPNNTSPDIFLEESGSLNREIHDMLENLGSEGLDALDEANVKMAGNGRQLREILLGLGVSEHVLRIDELFQCVEEAKATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQLQCKSFPTSRCVTLQVSRDQTQLQDIVQALFQEPYNPARLAEFLLDNCIEPVIMRPVMADYSEEADGGTYVRLSLSYATKEPSSAHVRPNYKQVLENLRLLLHTLAGINCSVSRDQHVFGIIGDHVKDKMLKLLVDECLIPAVPESTEEYQTSTLCEDVAQLEQLLVDSFIINPEQDRALGQFVEKYETYYRNRMYRRVLETAREIIQRDLQDMVLVAPNNHSAEVANDPFLFPRCMISKSAQDFVKLMDRILRQPTDKLGDQEADPIAGVISIMLHTYINEVPKVHRKLLESIPQQAVLFHNNCMFFTHWVAQHANKGIESLAALAKTLQATGQQHFRVQVDYQSSILMGIMQEFEFESTHTLGSGPLKLVRQCLRQLELLKNVWANVLPETVYNATFCELINTFVAELIRRVFTLRHISAQMACELSDLIDVVLQRAPTLFREPNEVVQVLSWLKLQQLKAMLNASLMEITELWGDGVGPLTASYKSDEIKHLIRALFQDTDWRAKAITQIV"
***Record from one_of.gb with the RecordParser
sequence length: 2509
locus: HSTMPO1
definition: Human thymopoietin (TMPO) gene, exon 1.
accession: ['U18266']
reference title: Structure and mapping of the human thymopoietin (TMPO) gene and relationship of TMPO beta to rat lamin-associated polypeptide 2
reference title: Direct Submission
feature key: source
location: 1..2509
num qualifiers: 6
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /chromosome= value: "12"
key: /map= value: "12q22; 64% (% distance from centromere to telomere)"
key: /clone= value: "P1.516 (DMPC-HFFno.1B-0943F)"
key: /clone_lib= value: "DuPont Merck Hum Fibroblast P1 Library no.1 Series B (compressed) (Genome Systems Inc)"
feature key: 5'UTR
location: one-of(1888,1901)..2200
num qualifiers: 1
key: /gene= value: "TMPO"
feature key: gene
location: join(1888..2509,U18267.1:1..270,U18268.1:1..309,U18270.1:1..6905,U18269.1:1..128,U18271.1:1..3234)
num qualifiers: 1
key: /gene= value: "TMPO"
feature key: exon
location: one-of(1888,1901)..2479
num qualifiers: 2
key: /gene= value: "TMPO"
key: /number= value: 1
feature key: CDS
location: join(2201..2479,U18267.1:120..246,U18268.1:130..288,U18270.1:4691..4788,U18269.1:82..>128)
num qualifiers: 6
key: /gene= value: "TMPO"
key: /codon_start= value: 1
key: /product= value: "thymopoietin beta"
key: /protein_id= value: "AAB60434.1"
key: /db_xref= value: "GI:885684"
key: /translation= value: "MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGS"
feature key: CDS
location: join(2201..2479,U18267.1:120..246,U18268.1:130..288,U18270.1:39..1558)
num qualifiers: 6
key: /gene= value: "TMPO"
key: /codon_start= value: 1
key: /product= value: "thymopoietin alpha"
key: /protein_id= value: "AAB60433.1"
key: /db_xref= value: "GI:885683"
key: /translation= value: "MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKALEESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQETEFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQSQHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEILGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISEAAQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKINLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH"
***Record from NT_019265.gb with the RecordParser
sequence length: 0
locus: NT_019265
definition: Homo sapiens chromosome 1 working draft sequence segment.
accession: ['NT_019265']
reference title: Direct Submission
feature key: source
location: 1..1250660
num qualifiers: 3
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /chromosome= value: "1"
feature key: source
location: 1..3290
num qualifiers: 4
key: /note= value: "Accession AL391218 sequenced by The Sanger Centre"
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /clone= value: "RP11-13G5"
feature key: misc_feature
location: 215902..365470
num qualifiers: 2
key: /standard_name= value: "RP11-242F24"
key: /note= value: "FISH-mapped clone"
feature key: variation
location: 217508
num qualifiers: 3
key: /allele= value: "T"
key: /allele= value: "C"
key: /db_xref= value: "dbSNP:811400"
feature key: mRNA
location: join(342430..342515,363171..363300,365741..365814,376398..376499,390169..390297,391257..391379,392606..392679,398230..398419,399082..399167,399534..399650,405844..405913,406704..406761,406868..407010,407962..408091,408508..409092)
num qualifiers: 4
key: /gene= value: "FLJ10737"
key: /product= value: "hypothetical protein FLJ10737"
key: /transcript_id= value: "XM_057697.1"
key: /db_xref= value: "LocusID:55735"
***Record from origin_line.gb with the RecordParser
sequence length: 180
locus: NC_002678
definition: Mesorhizobium loti, complete genome (edited).
accession: ['NC_002678']
reference title: Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
reference title: Direct Submission
feature key: source
location: 1..180
num qualifiers: 3
key: /organism= value: "Mesorhizobium loti"
key: /strain= value: "MAFF303099"
key: /db_xref= value: "taxon:381"
feature key: gene
location: 20..120
num qualifiers: 1
key: /gene= value: "fake"
***Record from blank_seq.gb with the RecordParser
sequence length: 360
locus: NP_001832
definition: cannabinoid receptor 2 (macrophage) [Homo sapiens].
accession: ['NP_001832']
reference title: Molecular characterization of a peripheral receptor for cannabinoids
reference title: Expression of central and peripheral cannabinoid receptors in human immune tissues and leukocyte subpopulations
reference title: Molecular cloning, expression and function of the murine CB2 peripheral cannabinoid receptor
feature key: source
location: 1..360
num qualifiers: 4
key: /organism= value: "Homo sapiens"
key: /db_xref= value: "taxon:9606"
key: /chromosome= value: "1"
key: /map= value: "1p36.11"
feature key: Protein
location: 1..360
num qualifiers: 1
key: /product= value: "cannabinoid receptor 2 (macrophage)"
feature key: Region
location: 50..299
num qualifiers: 3
key: /region_name= value: "7 transmembrane receptor (rhodopsin family)"
key: /db_xref= value: "CDD:pfam00001"
key: /note= value: "7tm_1"
feature key: CDS
location: 1..360
num qualifiers: 5
key: /pseudo value:
key: /gene= value: "CNR2"
key: /db_xref= value: "LocusID:1269"
key: /db_xref= value: "MIM:605051"
key: /coded_by= value: "NM_001841.1:127..1209"
***Record from dbsource_wrap.gb with the RecordParser
sequence length: 64
locus: SCX3_BUTOC
definition: Neurotoxin III.
accession: ['P01485']
reference title: Neurotoxins from the venoms of two scorpions: Buthus occitanus tunetanus and Buthus occitanus mardochei
feature key: source
location: 1..64
num qualifiers: 2
key: /organism= value: "Buthus occitanus tunetanus"
key: /db_xref= value: "taxon:6871"
feature key: Protein
location: 1..64
num qualifiers: 1
key: /product= value: "Neurotoxin III"
feature key: Bond
location: bond(12,63)
num qualifiers: 2
key: /bond_type= value: "disulfide"
key: /note= value: "BY SIMILARITY."
feature key: Bond
location: bond(16,36)
num qualifiers: 2
key: /bond_type= value: "disulfide"
key: /note= value: "BY SIMILARITY."
feature key: Bond
location: bond(22,46)
num qualifiers: 2
key: /bond_type= value: "disulfide"
key: /note= value: "BY SIMILARITY."
feature key: Bond
location: bond(26,48)
num qualifiers: 2
key: /bond_type= value: "disulfide"
key: /note= value: "BY SIMILARITY."
feature key: Site
location: 64
num qualifiers: 1
key: /site_type= value: "amidation"
***Record from gbvrl1_start.seq with the RecordParser
sequence length: 2007
locus: AB000048
definition: Feline panleukopenia virus DNA for nonstructural protein 1, complete cds.
accession: ['AB000048']
reference title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus
reference title: Direct Submission
feature key: source
location: 1..2007
num qualifiers: 5
key: /organism= value: "Feline panleukopenia virus"
key: /mol_type= value: "genomic DNA"
key: /isolate= value: "483"
key: /db_xref= value: "taxon:10786"
key: /lab_host= value: "Felis domesticus"
feature key: CDS
location: 1..2007
num qualifiers: 5
key: /codon_start= value: 1
key: /product= value: "nonstructural protein 1"
key: /protein_id= value: "BAA19009.1"
key: /db_xref= value: "GI:1769754"
key: /translation= value: "MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD"
***Record from gbvrl1_start.seq with the RecordParser
sequence length: 2007
locus: AB000049
definition: Feline panleukopenia virus DNA for nonstructural protein 1, complete cds.
accession: ['AB000049']
reference title: Evolutionary pattern of feline panleukopenia virus differs that of canine parvovirus
reference title: Direct Submission
feature key: source
location: 1..2007
num qualifiers: 5
key: /organism= value: "Feline panleukopenia virus"
key: /mol_type= value: "genomic DNA"
key: /isolate= value: "94-1"
key: /db_xref= value: "taxon:10786"
key: /lab_host= value: "Felis domesticus"
feature key: CDS
location: 1..2007
num qualifiers: 5
key: /codon_start= value: 1
key: /product= value: "nonstructural protein 1"
key: /protein_id= value: "BAA19010.1"
key: /db_xref= value: "GI:1769756"
key: /translation= value: "MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD"
***Record from gbvrl1_start.seq with the RecordParser
sequence length: 1755
locus: AB000050
definition: Feline panleukopenia virus DNA for capsid protein 2, complete cds.
accession: ['AB000050']
reference title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus
reference title: Direct Submission
feature key: source
location: 1..1755
num qualifiers: 5
key: /organism= value: "Feline panleukopenia virus"
key: /mol_type= value: "genomic DNA"
key: /isolate= value: "94-1"
key: /db_xref= value: "taxon:10786"
key: /lab_host= value: "Felis domesticus"
feature key: CDS
location: 1..1755
num qualifiers: 5
key: /codon_start= value: 1
key: /product= value: "capsid protein 2"
key: /protein_id= value: "BAA19011.1"
key: /db_xref= value: "GI:1769758"
key: /translation= value: "MSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYKRVVVNNMDKTAVKGNMALDDTHVQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNVYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGDPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPNNIGAMKIVYEKSQLAPRKLY"
***Record from NC_005816.gb with the RecordParser
sequence length: 9609
locus: NC_005816
definition: Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1, complete sequence.
accession: ['NC_005816']
reference title: Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus
reference title: Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans
reference title: Direct Submission
reference title: Direct Submission
feature key: source
location: 1..9609
num qualifiers: 6
key: /organism= value: "Yersinia pestis biovar Microtus str. 91001"
key: /mol_type= value: "genomic DNA"
key: /strain= value: "91001"
key: /db_xref= value: "taxon:229193"
key: /plasmid= value: "pPCP1"
key: /biovar= value: "Microtus"
feature key: repeat_region
location: 1..1954
num qualifiers: 0
feature key: gene
location: 87..1109
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP01"
key: /db_xref= value: "GeneID:2767718"
feature key: CDS
location: 87..1109
num qualifiers: 9
key: /locus_tag= value: "YP_pPCP01"
key: /note= value: "similar to corresponding CDS from previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many transposase entries for insertion sequence IS100 of Yersinia pestis. Contains IS21-like element transposase, HTH domain (Interpro|IPR007101)"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "putative transposase"
key: /protein_id= value: "NP_995567.1"
key: /db_xref= value: "GI:45478712"
key: /db_xref= value: "GeneID:2767718"
key: /translation= value: "MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA"
feature key: misc_feature
location: 87..959
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP01"
key: /note= value: "Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584"
key: /db_xref= value: "CDD:34222"
feature key: misc_feature
location: <111..209
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP01"
key: /note= value: "Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116"
key: /db_xref= value: "CDD:186341"
feature key: misc_feature
location: 438..812
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP01"
key: /note= value: "Integrase core domain; Region: rve; cl01316"
key: /db_xref= value: "CDD:194099"
feature key: gene
location: 1106..1888
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP02"
key: /db_xref= value: "GeneID:2767716"
feature key: CDS
location: 1106..1888
num qualifiers: 9
key: /locus_tag= value: "YP_pPCP02"
key: /note= value: "similar to corresponding CDS form previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many ATP-binding protein entries for insertion sequence IS100 of Yersinia pestis. Contains Chaperonin clpA/B (Interpro|IPR001270). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, Molecular Function: ATP binding (GO:0005524)). Contains Bacterial chromosomal replication initiator protein, DnaA (Interpro|IPR001957, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275)). Contains AAA ATPase (Interpro|IPR003593, Molecular Function: nucleotide binding (GO:0000166))"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "transposase/IS protein"
key: /protein_id= value: "NP_995568.1"
key: /db_xref= value: "GI:45478713"
key: /db_xref= value: "GeneID:2767716"
key: /translation= value: "MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
feature key: misc_feature
location: 1109..1885
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP02"
key: /note= value: "transposase/IS protein; Provisional; Region: PRK09183"
key: /db_xref= value: "CDD:181681"
feature key: misc_feature
location: 1367..>1669
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP02"
key: /note= value: "The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009"
key: /db_xref= value: "CDD:99707"
feature key: misc_feature
location: 1433..1456
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP02"
key: /note= value: "Walker A motif; other site"
key: /db_xref= value: "CDD:99707"
feature key: misc_feature
location: order(1436..1459,1619..1621)
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP02"
key: /note= value: "ATP binding site [chemical binding]; other site"
key: /db_xref= value: "CDD:99707"
feature key: misc_feature
location: 1607..1624
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP02"
key: /note= value: "Walker B motif; other site"
key: /db_xref= value: "CDD:99707"
feature key: gene
location: 2925..3119
num qualifiers: 4
key: /gene= value: "rop"
key: /locus_tag= value: "YP_pPCP03"
key: /gene_synonym= value: "rom"
key: /db_xref= value: "GeneID:2767717"
feature key: CDS
location: 2925..3119
num qualifiers: 11
key: /gene= value: "rop"
key: /locus_tag= value: "YP_pPCP03"
key: /gene_synonym= value: "rom"
key: /note= value: "Best Blastp hit =gi|16082682|ref|NP_395229.1| (NC_003132) putative replication regulatory protein [Yersinia pestis], gi|5763813|emb|CAB531 66.1| (AL109969) putative replication regulatory protein [Yersinia pestis]; similar to gb|AAK91579.1| (AY048853), RNAI modulator protein Rom [Salmonella choleraesuis], Contains Regulatory protein Rop (Interpro|IPR000769)"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "putative replication regulatory protein"
key: /protein_id= value: "NP_995569.1"
key: /db_xref= value: "GI:45478714"
key: /db_xref= value: "GeneID:2767717"
key: /translation= value: "MNKQQQTALNMARFIRSQSLILLEKLDALDADEQAAMCERLHELAEELQNSIQARFEAESETGT"
feature key: misc_feature
location: 2925..3107
num qualifiers: 5
key: /gene= value: "rop"
key: /locus_tag= value: "YP_pPCP03"
key: /gene_synonym= value: "rom"
key: /note= value: "Rop protein; Region: Rop; pfam01815"
key: /db_xref= value: "CDD:145136"
feature key: gene
location: 3486..3857
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP04"
key: /db_xref= value: "GeneID:2767720"
feature key: CDS
location: 3486..3857
num qualifiers: 9
key: /locus_tag= value: "YP_pPCP04"
key: /note= value: "Best Blastp hit = gi|321919|pir||JQ1541 hypothetical 16.9K protein - Salmonella typhi murium plasmid NTP16."
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "hypothetical protein"
key: /protein_id= value: "NP_995570.1"
key: /db_xref= value: "GI:45478715"
key: /db_xref= value: "GeneID:2767720"
key: /translation= value: "MSKKRRPQKRPRRRRFFHRLRPPDEHHKNRRSSQRWRNPTGLKDTRRFPPEAPSCALLFRPCRLPDTSPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTTAPYPVTIVLSPTR"
feature key: misc_feature
location: 3498..3626
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP04"
key: /note= value: "ProfileScan match to entry PS50323 ARG_RICH, E-value 8.981"
feature key: gene
location: 4343..4780
num qualifiers: 3
key: /gene= value: "pim"
key: /locus_tag= value: "YP_pPCP05"
key: /db_xref= value: "GeneID:2767712"
feature key: CDS
location: 4343..4780
num qualifiers: 10
key: /gene= value: "pim"
key: /locus_tag= value: "YP_pPCP05"
key: /note= value: "similar to many previously sequenced pesticin immunity protein entries of Yersinia pestis plasmid pPCP, e.g. gi| 16082683|,ref|NP_395230.1| (NC_003132) , gi|1200166|emb|CAA90861.1| (Z54145 ) , gi|1488655| emb|CAA63439.1| (X92856) , gi|2996219|gb|AAC62543.1| (AF053945) , and gi|5763814|emb|CAB531 67.1| (AL109969)"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "pesticin immunity protein"
key: /protein_id= value: "NP_995571.1"
key: /db_xref= value: "GI:45478716"
key: /db_xref= value: "GeneID:2767712"
key: /translation= value: "MGGGMISKLFCLALIFLSSSGLAEKNTYTAKDILQNLELNTFGNSLSHGIYGKQTTFKQTEFTNIKSNTKKHIALINKDNSWMISLKILGIKRDEYTVCFEDFSLIRPPTYVAIHPLLIKKVKSGNFIVVKEIKKSIPGCTVYYH"
feature key: gene
location: complement(4815..5888)
num qualifiers: 3
key: /gene= value: "pst"
key: /locus_tag= value: "YP_pPCP06"
key: /db_xref= value: "GeneID:2767721"
feature key: CDS
location: complement(4815..5888)
num qualifiers: 10
key: /gene= value: "pst"
key: /locus_tag= value: "YP_pPCP06"
key: /note= value: "Best Blastp hit =|16082684|ref|NP_395231.1| (NC_003132) pesticin [Yersinia pestis], gi|984824|gb|AAA75369.1| (U31974) pesticin [Yersinia pestis], gi|1488654|emb|CAA63438.1| (X92856) pesticin [Yersinia pestis], gi|2996220|gb|AAC62544.1| (AF053945) pesticin [Yersinia pestis], gi|5763815|emb|CAB53168.1| (AL1099 69) pesticin [Yersinia pestis]"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "pesticin"
key: /protein_id= value: "NP_995572.1"
key: /db_xref= value: "GI:45478717"
key: /db_xref= value: "GeneID:2767721"
key: /translation= value: "MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLNDGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKREGALVQKDIDSGLLK"
feature key: variation
location: 5910..5911
num qualifiers: 2
key: /note= value: "compared to AF053945"
key: /replace= value: ""
feature key: variation
location: 5933^5934
num qualifiers: 2
key: /note= value: "compared to AL109969"
key: /replace= value: "a"
feature key: variation
location: 5933^5934
num qualifiers: 2
key: /note= value: "compared to AF053945"
key: /replace= value: "aa"
feature key: variation
location: 5948
num qualifiers: 2
key: /note= value: "compared to AL109969"
key: /replace= value: "c"
feature key: gene
location: 6005..6421
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP07"
key: /db_xref= value: "GeneID:2767719"
feature key: CDS
location: 6005..6421
num qualifiers: 9
key: /locus_tag= value: "YP_pPCP07"
key: /note= value: "Best Blastp hit = gi|16082685|ref|NP_395232.1| (NC_003132) hypothetical protein [Yersinia pestis], gi|5763816|emb|CAB53169.1| (AL109969) hypothetical protein [Yersinia pestis]"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "hypothetical protein"
key: /protein_id= value: "NP_995573.1"
key: /db_xref= value: "GI:45478718"
key: /db_xref= value: "GeneID:2767719"
key: /translation= value: "MKFHFCDLNHSYKNQEGKIRSRKTAPGNIRKKQKGDNVSKTKSGRHRLSKTDKRLLAALVVAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKYLSGKKPEGVEPREGQEREDLP"
feature key: variation
location: 6525
num qualifiers: 2
key: /note= value: "compared to AF053945 and AL109969"
key: /replace= value: "c"
feature key: gene
location: 6664..7602
num qualifiers: 3
key: /gene= value: "pla"
key: /locus_tag= value: "YP_pPCP08"
key: /db_xref= value: "GeneID:2767715"
feature key: CDS
location: 6664..7602
num qualifiers: 11
key: /gene= value: "pla"
key: /locus_tag= value: "YP_pPCP08"
key: /EC_number= value: "3.4.23.48"
key: /note= value: "outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "outer membrane protease"
key: /protein_id= value: "NP_995574.1"
key: /db_xref= value: "GI:45478719"
key: /db_xref= value: "GeneID:2767715"
key: /translation= value: "MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQIIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF"
feature key: misc_feature
location: 6664..7599
num qualifiers: 4
key: /gene= value: "pla"
key: /locus_tag= value: "YP_pPCP08"
key: /note= value: "Omptin family; Region: Omptin; cl01886"
key: /db_xref= value: "CDD:186487"
feature key: gene
location: complement(7789..8088)
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP09"
key: /db_xref= value: "GeneID:2767713"
feature key: CDS
location: complement(7789..8088)
num qualifiers: 9
key: /locus_tag= value: "YP_pPCP09"
key: /note= value: "Best Blastp hit = gi|16082687|ref|NP_395234.1| (NC_003132) putative transcriptional regulator [Yersinia pestis], gi|5763818|emb|CAB53171.1| (AL109969) putative transcriptional regulator [Yersinia pestis]."
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "putative transcriptional regulator"
key: /protein_id= value: "NP_995575.1"
key: /db_xref= value: "GI:45478720"
key: /db_xref= value: "GeneID:2767713"
key: /translation= value: "MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELPTGRRVAFHV"
feature key: misc_feature
location: complement(7837..7995)
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP09"
key: /note= value: "Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100"
key: /db_xref= value: "CDD:195788"
feature key: gene
location: complement(8088..8360)
num qualifiers: 2
key: /locus_tag= value: "YP_pPCP10"
key: /db_xref= value: "GeneID:2767714"
feature key: CDS
location: complement(8088..8360)
num qualifiers: 9
key: /locus_tag= value: "YP_pPCP10"
key: /note= value: "Best Blastp hit = gi|16082688|ref|NP_395235.1| (NC_003132) hypothetical protein [ Yersinia pestis], gi|5763819|emb|CAB53172.1| (AL109969) hypothetical protein [Yersinia pestis]"
key: /codon_start= value: 1
key: /transl_table= value: 11
key: /product= value: "hypothetical protein"
key: /protein_id= value: "NP_995576.1"
key: /db_xref= value: "GI:45478721"
key: /db_xref= value: "GeneID:2767714"
key: /translation= value: "MADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFTAHLNTLESK"
feature key: misc_feature
location: complement(8091..>8357)
num qualifiers: 3
key: /locus_tag= value: "YP_pPCP10"
key: /note= value: "Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470"
key: /db_xref= value: "CDD:194142"
feature key: variation
location: 8529^8530
num qualifiers: 2
key: /note= value: "compared to AL109969"
key: /replace= value: "tt"
***Record from no_end_marker.gb with the RecordParser
sequence length: 6497
locus: AB070938
definition: Streptomyces avermitilis melanin biosynthetic gene cluster.
accession: ['AB070938']
feature key: source
location: 1..6497
num qualifiers: 3
key: /organism= value: "Streptomyces avermitilis"
key: /mol_type= value: "genomic DNA"
key: /db_xref= value: "taxon:33903"
***Record from wrong_sequence_indent.gb with the RecordParser
sequence length: 6497
locus: AB070938
definition: Streptomyces avermitilis melanin biosynthetic gene cluster.
accession: ['AB070938']
feature key: source
location: 1..6497
num qualifiers: 3
key: /organism= value: "Streptomyces avermitilis"
key: /mol_type= value: "genomic DNA"
key: /db_xref= value: "taxon:33903"
***Record from invalid_locus_line_spacing.gb with the RecordParser
sequence length: 6497
locus: AB070938
definition: Streptomyces avermitilis melanin biosynthetic gene cluster.
accession: ['AB070938']
feature key: source
location: 1..6497
num qualifiers: 3
key: /organism= value: "Streptomyces avermitilis"
key: /mol_type= value: "genomic DNA"
key: /db_xref= value: "taxon:33903"
***Record from empty_feature_qualifier.gb with the RecordParser
sequence length: 6497
locus: AB070938
definition: Streptomyces avermitilis melanin biosynthetic gene cluster.
accession: ['AB070938']
feature key: source
location: 1..6497
num qualifiers: 5
key: /organism= value: "Streptomyces avermitilis"
key: /mol_type= value: "genomic DNA"
key: /db_xref= value: "taxon:33903"
key: /note= value: "This is a correct note, the following one isn't"
key: /note value:
***Record from invalid_misc_feature.gb with the RecordParser
sequence length: 6497
locus: AB070938
definition: Streptomyces avermitilis melanin biosynthetic gene cluster.
accession: ['AB070938']
feature key: source
location: 1..6497
num qualifiers: 3
key: /organism= value: "Streptomyces avermitilis"
key: /mol_type= value: "genomic DNA"
key: /db_xref= value: "taxon:33903"
***Record from 1MRR_A.gp with the RecordParser
sequence length: 375
locus: 1MRR_A
definition: Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization.
accession: ['1MRR_A']
reference title: Three-dimensional structure of the free radical protein of ribonucleotide reductase
reference title: Substitution of manganese for iron in ribonucleotide reductase from Escherichia coli. Spectroscopic and crystallographic characterization
reference title: Direct Submission
feature key: source
location: 1..375
num qualifiers: 2
key: /organism= value: "Escherichia coli"
key: /db_xref= value: "taxon:562"
feature key: Region
location: 28..340
num qualifiers: 3
key: /region_name= value: "RNRR2"
key: /note= value: "Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; cd01049"
key: /db_xref= value: "CDD:153108"
feature key: SecStr
location: 35..46
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 1"
feature key: Site
location: order(37,44,109..110,113,116..117,120,123,137..138,141)
num qualifiers: 3
key: /site_type= value: "other"
key: /note= value: "dimer interface [polypeptide binding]"
key: /db_xref= value: "CDD:153108"
feature key: Site
location: order(48,84,115,118,122,236..237,241)
num qualifiers: 3
key: /site_type= value: "other"
key: /note= value: "putative radical transfer pathway"
key: /db_xref= value: "CDD:153108"
feature key: SecStr
location: 57..65
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 2"
feature key: SecStr
location: 67..87
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 3"
feature key: Site
location: order(84,115,118,204,238,241)
num qualifiers: 3
key: /site_type= value: "other"
key: /note= value: "diiron center [ion binding]"
key: /db_xref= value: "CDD:153108"
feature key: Het
location: join(bond(84),bond(115),bond(118),bond(238))
num qualifiers: 1
key: /heterogen= value: "( MN,1000 )"
feature key: SecStr
location: 102..129
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 4"
feature key: Het
location: join(bond(115),bond(204),bond(238),bond(241))
num qualifiers: 1
key: /heterogen= value: "( MN,1001 )"
feature key: Site
location: 122
num qualifiers: 3
key: /site_type= value: "other"
key: /note= value: "tyrosyl radical"
key: /db_xref= value: "CDD:153108"
feature key: SecStr
location: 133..140
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 5"
feature key: SecStr
location: 143..151
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 6"
feature key: SecStr
location: 153..169
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 7"
feature key: SecStr
location: 172..177
num qualifiers: 2
key: /sec_str_type= value: "sheet"
key: /note= value: "strand 1"
feature key: SecStr
location: 180..185
num qualifiers: 2
key: /sec_str_type= value: "sheet"
key: /note= value: "strand 2"
feature key: SecStr
location: 186..216
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 8"
feature key: Het
location: join(bond(194),bond(272))
num qualifiers: 1
key: /heterogen= value: "( HG,1003 )"
feature key: Het
location: bond(196)
num qualifiers: 1
key: /heterogen= value: "( HG,1005 )"
feature key: Het
location: join(bond(196),bond(196))
num qualifiers: 1
key: /heterogen= value: "( HG,1002 )"
feature key: Het
location: join(bond(210),bond(214),bond(214))
num qualifiers: 1
key: /heterogen= value: "( HG,1004 )"
feature key: SecStr
location: 225..253
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 9"
feature key: SecStr
location: 260..269
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 10"
feature key: Bond
location: bond(268,272)
num qualifiers: 1
key: /bond_type= value: "disulfide"
feature key: SecStr
location: 270..285
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 11"
feature key: Het
location: join(bond(284),bond(305),bond(309),bond(305))
num qualifiers: 1
key: /heterogen= value: "( HG,1006 )"
feature key: SecStr
location: 301..319
num qualifiers: 2
key: /sec_str_type= value: "helix"
key: /note= value: "helix 12"
Testing writing GenBank format...
Testing GenBank writing for noref.gb...
Testing for NM_006141.1
Testing GenBank writing for cor6_6.gb...
Testing for X55053.1
Testing for X62281.1
Testing for M81224.1
Testing for AJ237582.1
Testing for L31939.1
Testing for AF297471.1
Testing GenBank writing for iro.gb...
Testing for AL109817.1
Testing GenBank writing for pri1.gb...
Testing for U05344.1
Testing GenBank writing for arab1.gb...
Testing for AC007323.5
Testing GenBank writing for extra_keywords.gb...
Testing for AL138972.1
Testing GenBank writing for one_of.gb...
Testing for U18266.1
Testing GenBank writing for origin_line.gb...
Testing for NC_002678.1
Testing feature cleaning...
Testing EnsEMBL LOCUS lines...
Done