BLASTN 2.10.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Refseq viruses representative genomes 12,171 sequences; 317,448,394 total letters Query= MN541255.1 Middle East respiratory syndrome-related coronavirus isolate B7-37 S protein gene, partial cds Length=1046 Score E Sequences producing significant alignments: (Bits) Value NC_019843.3 Middle East respiratory syndrome coronavirus, complet... 1899 0.0 NC_038294.1 Betacoronavirus England 1, complete genome 1893 0.0 NC_034440.1 Bat coronavirus isolate PREDICT/PDF-2180, complete ge... 983 0.0 NC_009019.1 Bat coronavirus HKU4-1, complete genome 466 1e-129 NC_039207.1 Betacoronavirus Erinaceus/VMC/DEU/2012 isolate Erinac... 375 2e-102 NC_009020.1 Bat coronavirus HKU5-1, complete genome 372 3e-101 NC_030886.1 Rousettus bat coronavirus isolate GCCDC1 356, complet... 58.4 9e-07 NC_017083.1 Rabbit coronavirus HKU14, complete genome 56.5 3e-06 NC_006213.1 Human coronavirus OC43 strain ATCC VR-759, complete g... 56.5 3e-06 >NC_019843.3 Middle East respiratory syndrome coronavirus, complete genome Length=30119 Score = 1899 bits (1028), Expect = 0.0 Identities = 1040/1046 (99%), Gaps = 0/1046 (0%) Strand=Plus/Plus Query 1 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23864 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCGA 23923 Query 61 GTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23924 GTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAGGA 23983 Query 121 TGATTCTGTACGTAATTTGTTTGCGAGCGTGAAAATTTATCAATCATCTCCTATCATACC 180 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 23984 TGATTCTGTACGTAATTTGTTTGCGAGCGTGAAAAGCTCTCAATCATCTCCTATCATACC 24043 Query 181 AGGTTTTGGAGGTGACTTTAATTTGACACTTCTAGAACCTGTTTCTATATCTACTGGCAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24044 AGGTTTTGGAGGTGACTTTAATTTGACACTTCTAGAACCTGTTTCTATATCTACTGGCAG 24103 Query 241 TCCTAGTGCACGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAGCTGATCC 300 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24104 TCGTAGTGCACGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAGCTGATCC 24163 Query 301 TGGTTATATGCAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCATCAGCTCGTGATCT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24164 TGGTTATATGCAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCATCAGCTCGTGATCT 24223 Query 361 TATTTGTGCTCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTTATGGATGTTAATAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24224 TATTTGTGCTCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTTATGGATGTTAATAT 24283 Query 421 GGAAGCCGCGTATACTTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCTGGACTGCTGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24284 GGAAGCCGCGTATACTTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCTGGACTGCTGG 24343 Query 481 CTTATCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAAACGGTGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24344 CTTATCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAAACGGTGT 24403 Query 541 TGGCATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATAAGTTTAATCA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24404 TGGCATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATAAGTTTAATCA 24463 Query 601 GGCTCTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCAGAAGGTTCA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24464 GGCTCTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCAGAAGGTTCA 24523 Query 661 GGATGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGCGAGCTATCTAATAC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24524 GGATGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGCGAGCTATCTAATAC 24583 Query 721 TTTTGGTGCTATTTCCGCCTCTATTGGAGACATCATACAACGTCTTGATGTTCTCGAACA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24584 TTTTGGTGCTATTTCCGCCTCTATTGGAGACATCATACAACGTCTTGATGTTCTCGAACA 24643 Query 781 GGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTTTTGTTGC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24644 GGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTTTTGTTGC 24703 Query 841 GCAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGCTAAAGATAAAGT 900 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 24704 ACAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCCGCTCAATTGGCTAAAGATAAAGT 24763 Query 901 CAATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCACACATAT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24764 CAATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCACACATAT 24823 Query 961 AGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTTATTACCC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24824 AGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTTATTACCC 24883 Query 1021 TAGCAACCACATTGAGGTTGTTTCTG 1046 |||||||||||||||||||||||||| Sbjct 24884 TAGCAACCACATTGAGGTTGTTTCTG 24909 >NC_038294.1 Betacoronavirus England 1, complete genome Length=30111 Score = 1893 bits (1025), Expect = 0.0 Identities = 1039/1046 (99%), Gaps = 0/1046 (0%) Strand=Plus/Plus Query 1 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23863 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCGA 23922 Query 61 GTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23923 GTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAGGA 23982 Query 121 TGATTCTGTACGTAATTTGTTTGCGAGCGTGAAAATTTATCAATCATCTCCTATCATACC 180 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 23983 TGATTCTGTACGTAATTTGTTTGCGAGCGTGAAAAGCTCTCAATCATCTCCTATCATACC 24042 Query 181 AGGTTTTGGAGGTGACTTTAATTTGACACTTCTAGAACCTGTTTCTATATCTACTGGCAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24043 AGGTTTTGGAGGTGACTTTAATTTGACACTTCTAGAACCTGTTTCTATATCTACTGGCAG 24102 Query 241 TCCTAGTGCACGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAGCTGATCC 300 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24103 TCGTAGTGCACGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAGCTGATCC 24162 Query 301 TGGTTATATGCAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCATCAGCTCGTGATCT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24163 TGGTTATATGCAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCATCAGCTCGTGATCT 24222 Query 361 TATTTGTGCTCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTTATGGATGTTAATAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24223 TATTTGTGCTCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTTATGGATGTTAATAT 24282 Query 421 GGAAGCCGCGTATACTTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCTGGACTGCTGG 480 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 24283 GGAAGCCGCGTATACCTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCTGGACTGCTGG 24342 Query 481 CTTATCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAAACGGTGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24343 CTTATCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAAACGGTGT 24402 Query 541 TGGCATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATAAGTTTAATCA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24403 TGGCATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATAAGTTTAATCA 24462 Query 601 GGCTCTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCAGAAGGTTCA 660 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 24463 GGCTCTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCACAAGGTTCA 24522 Query 661 GGATGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGCGAGCTATCTAATAC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24523 GGATGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGCGAGCTATCTAATAC 24582 Query 721 TTTTGGTGCTATTTCCGCCTCTATTGGAGACATCATACAACGTCTTGATGTTCTCGAACA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24583 TTTTGGTGCTATTTCCGCCTCTATTGGAGACATCATACAACGTCTTGATGTTCTCGAACA 24642 Query 781 GGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTTTTGTTGC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24643 GGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTTTTGTTGC 24702 Query 841 GCAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGCTAAAGATAAAGT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24703 ACAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGCTAAAGATAAAGT 24762 Query 901 CAATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCACACATAT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24763 CAATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCACACATAT 24822 Query 961 AGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTTATTACCC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24823 AGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTTATTACCC 24882 Query 1021 TAGCAACCACATTGAGGTTGTTTCTG 1046 |||||||||||||||||||||||||| Sbjct 24883 TAGCAACCACATTGAGGTTGTTTCTG 24908 >NC_034440.1 Bat coronavirus isolate PREDICT/PDF-2180, complete genome Length=29642 Score = 983 bits (532), Expect = 0.0 Identities = 882/1053 (84%), Gaps = 16/1053 (2%) Strand=Plus/Plus Query 2 GTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCG-- 59 ||||| |||||||||||||| ||||||||||| |||||||| || |||| || Sbjct 23617 GTTGACTGTAAACAGTACGTGTGCAATGGTTTTGCTAAGTGTGA--AA-AGCTGCTCGAA 23673 Query 60 -AGTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAG 118 | || || |||||||| || ||||| ||||||||||||||||| || ||| | |||||| Sbjct 23674 CAATACGGTCAGTTTTGCTCTAAAATTAACCAGGCTCTCCATGGCGCGAATCTTCGCCAG 23733 Query 119 GATGATTCTGTACGTAATTTGTTTGCGAGCGTGAAAATTTATCA-A-TCATCTCCTATCA 176 ||||| | ||| |||||| |||||| ||| || |||| | || | || |||| | | Sbjct 23734 GATGACTTTGTTCGTAATCTGTTTGAGAGTGTTAAAA--CACCACAGACAGTTCCTCTTA 23791 Query 177 -TACCAGGTTTTGGAGGTGACTTTAATTTGACACTTCTAGAACCTGTTTCTATATCTACT 235 || ||||||||||||| || |||||| | || |||||||| || ||||| | ||||| Sbjct 23792 CTA-CAGGTTTTGGAGGGGAGTTTAATCTTACTCTTCTAGAGCCGCTTTCTGTTTCTACA 23850 Query 236 GGCAGTCCTAGTGCACGTAGTGCTATTG-AG-GATTTGCTATTTGACAAAGTCACTATAG 293 || | ||| ||| ||||||||| | | || | ||| | ||||||||||||||||||| Sbjct 23851 GGTTCTTCTAATGCGCGTAGTGCTTTGGAAGAGCTTT--TGTTTGACAAAGTCACTATAG 23908 Query 294 CTGATCCTGGTTATATGCAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCATCAGCTC 353 |||||||||| || ||||||||||| ||||| |||||||| || || || || ||||||| Sbjct 23909 CTGATCCTGGCTACATGCAAGGTTATGATGACTGCATGCAACAGGGCCCTGCCTCAGCTC 23968 Query 354 GTGATCTTATTTGTGCTCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTTATGGATG 413 |||||||||| |||||||||||||| ||||| |||||||| ||||| || |||||||||| Sbjct 23969 GTGATCTTATCTGTGCTCAATATGTTGCTGGCTACAAAGTGTTACCACCCCTTATGGATG 24028 Query 414 TTAATATGGAAGCCGCGTATACTTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCTGGA 473 |||| |||||||| || || || || ||||||||||| |||||||| |||| |||||||| Sbjct 24029 TTAACATGGAAGCTGCATACACCTCTTCTTTGCTTGGTAGCATAGCTGGTGCTGGCTGGA 24088 Query 474 CTGCTGGCTTATCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAA 533 ||||||| ||||| || |||||||| |||||||||||||||||||| ||||| ||||||| Sbjct 24089 CTGCTGGTTTATCATCATTTGCTGCCATTCCATTTGCACAGAGTATATTTTACAGGTTAA 24148 Query 534 ACGGTGTTGGCATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATAAGT 593 | |||||||| || || ||||||||||| || ||||| |||||| ||||||| || |||| Sbjct 24149 ATGGTGTTGGTATAACACAACAGGTTCTATCTGAGAATCAAAAGATTATTGCTAACAAGT 24208 Query 594 TTAATCAGGCTCTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCAGA 653 |||| || ||||| || || |||||||| || ||||| |||||||||||||||||||||| Sbjct 24209 TTAACCAAGCTCTTGGTGCCATGCAAACTGGTTTCACAACAACTAATGAAGCTTTTCAGA 24268 Query 654 AGGTTCAGGATGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGCGAGCTAT 713 | ||||| ||||||||||||| ||||||||||||||| | || || ||||| || |||| Sbjct 24269 AAGTTCAAGATGCTGTGAACACTAATGCACAGGCTCTAGCTAAGTTGGCTAGTGAACTAT 24328 Query 714 CTAATACTTTTGGTGCTATTTCCGCCTCTATTGGAGACATCATACAACGTCTTGATGTTC 773 | |||||||||||||||||||| | || ||||| |||||||| |||||||||||||| | Sbjct 24329 CCAATACTTTTGGTGCTATTTCTTCTTCCATTGGTGACATCATTCAACGTCTTGATGTGC 24388 Query 774 TCGAACAGGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTT 833 | |||||||| | |||||||||||||||||||||||||||| |||| ||||| || || | Sbjct 24389 TTGAACAGGAAGTCCAAATAGACAGACTTATTAATGGCCGTCTGACTACACTCAACGCCT 24448 Query 834 TTGTTGCGCAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGCTAAAG 893 ||||||| ||||||||||||||||| ||||| ||||||| ||| || ||||||||||| | Sbjct 24449 TTGTTGCTCAGCAGCTTGTTCGTTCTGAATCTGCTGCTCGTTCTGCACAATTGGCTAAGG 24508 Query 894 ATAAAGTCAATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCA 953 ||||||||||||||||||| || ||||||||| | ||||||||||| |||||||||| Sbjct 24509 ATAAAGTCAATGAGTGTGTTAAATCACAATCCACTAGATCTGGATTTTGTGGTCAAGGCA 24568 Query 954 CACATATAGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTT 1013 | |||||||||||||||||| | || |||||||||||||| ||||| ||||||||||||| Sbjct 24569 CTCATATAGTGTCCTTTGTTATTAACGCCCCTAATGGCCTCTACTTTATGCATGTTGGTT 24628 Query 1014 ATTACCCTAGCAACCACATTGAGGTTGTTTCTG 1046 | |||||||| | || |||||||||||| ||| Sbjct 24629 ACCACCCTAGCCAACATATTGAGGTTGTTGCTG 24661 >NC_009019.1 Bat coronavirus HKU4-1, complete genome Length=30286 Score = 466 bits (252), Expect = 1e-129 Identities = 604/775 (78%), Gaps = 20/775 (3%) Strand=Plus/Plus Query 251 CGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAGCTGATCCTGGTTATATG 310 |||||||||||||| || || ||||||| || || ||||| || ||||| ||||||||| Sbjct 24225 CGTAGTGCTATTGAAGACTTATTATTTGATAAGGTAACTATTGCAGATCCCGGTTATATG 24284 Query 311 CAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCA-TCAGCTCGTGATCTTATTTGTGC 369 || || || |||||||||||| | ||||| || || || ||| | |||||||||||||| Sbjct 24285 CAGGGCTATGATGATTGCATGAAACAAGGACC-CCAGTCTGCTAGAGATCTTATTTGTGC 24343 Query 370 TCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTT-ATGGATGTTAATATGGAAGCCG 428 |||||||||| ||||||||||||| ||||| || ||| || || |||||||||||| | Sbjct 24344 TCAATATGTGTCTGGTTACAAAGTTTTACCACCACTTTAT-GACCCTAATATGGAAGCTG 24402 Query 429 CGTATACTTCATCTTTGCT-T--GGCAGCATAGCAGGTGTTGGCTGGACTGCTGG-CTTA 484 | | ||| |||||| || | || || |||||||||| ||| ||||| ||||| ||| Sbjct 24403 C-T-TACA-CATCTTCACTATTAGGTAGTATAGCAGGTGCTGGATGGACAGCTGGTCTT- 24458 Query 485 TCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAAACGGTGTTGGC 544 || |||||||| ||||| || |||||||| ||||| ||||||||||| || || ||||| Sbjct 24459 TCATCCTTTGCCGCTATACCTTTTGCACAAAGTATGTTTTATAGGTTGAATGGCGTTGGT 24518 Query 545 ATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATAAGTTTAATCAGGCT 604 ||||||||||| ||||| || |||||||||||| | ||||| || |||||||| || || Sbjct 24519 ATTACTCAACAAGTTCTCTCTGAGAACCAAAAGTTGATTGCTAACAAGTTTAACCAAGCC 24578 Query 605 CTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCAG-AAGGTTCAGGA 663 | || ||||||||||| ||||| || ||| |||| ||||||| || |||||||| || Sbjct 24579 TTAGGTGCTATGCAAACTGGCTTTACAACATCTAACCTAGCTTTT-AGCAAGGTTCAAGA 24637 Query 664 TGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGC-GAGCTATCTAATACTT 722 |||||| || ||||||||| || || || || ||||| | | ||| | |||||||||| Sbjct 24638 TGCTGTAAATGCCAATGCACAAGCACTTTCTAAGTTAGC-ATCAGAGTTGTCTAATACTT 24696 Query 723 TTGGTGCTATTTCCGCCTCTATTGGAGACATCATA-CAACGTCTTGATGTTCTCGAACAG 781 ||||||||||||| | |||||| | |||||| | | | | ||||| | | |||||| Sbjct 24697 TTGGTGCTATTTCTTCATCTATTAGTGACATCCTTGCTAGG-CTTGACACTGTTGAACAG 24755 Query 782 GACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTTTTGTTGCG 841 || || ||||| || | | || ||||| || || | | || || || |||||| | Sbjct 24756 GATGCGCAAATTGATCGTTTGATCAATGGTCGCTTAATTTCTCTTAACGCATTTGTTTCA 24815 Query 842 CAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGCTAAAGATAAAGTC 901 || || ||||| ||||| ||| | |||||| || ||||| ||||||| || |||||| Sbjct 24816 CAACAACTTGTGCGTTCTGAAACTGCTGCTAGATCTGCTCAGTTGGCTAGTGACAAAGTC 24875 Query 902 AATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGG-TCAAGGCACACATAT 960 || |||||||| || ||||||||||| | ||| || || || || ||||| ||||| Sbjct 24876 AACGAGTGTGTAAAATCACAATCCAAGAGAAATGGGTTCTGTGGGTCT-GGCACTCATAT 24934 Query 961 AGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTTAT 1015 ||| || |||||||| ||||| || ||||| |||| ||| | |||||||||||| Sbjct 24935 AGTATCATTTGTTGTTAATGCTCCAAATGGTTTTTATTTCTTTCATGTTGGTTAT 24989 Score = 67.6 bits (36), Expect = 1e-09 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCGA 60 ||| |||||||||||||| || || |||||||| | |||||| | || || || Sbjct 23975 TGTAGATTGTAAACAGTATGTCTGTAATGGTTTTACTAGGTGTGAAAAGCTATTGGTTGA 24034 Query 61 GTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAAT-TTACGCCAGG 119 ||||| || |||||||||||||| || || ||| | |||||||| ||| ||| | || | Sbjct 24035 ATATGGGCAATTTTGTTCCAAAATTAATCAAGCTTTACATGGTGCTAATCTTA-GACAAG 24093 Query 120 ATGATTCTGT 129 |||| ||||| Sbjct 24094 ATGAGTCTGT 24103 >NC_039207.1 Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-174/GER/2012, complete genome Length=30148 Score = 375 bits (203), Expect = 2e-102 Identities = 585/774 (76%), Gaps = 8/774 (1%) Strand=Plus/Plus Query 251 CGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAGCTGATCCTGGTTATATG 310 || |||||| | || ||| |||| ||||| || || || || | ||||| ||||||||| Sbjct 24211 CGCAGTGCTTTAGAAGATCTGCTTTTTGATAAGGTTACATTATCAGATCCAGGTTATATG 24270 Query 311 CAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCATCA-GCTCGTGATCTTATTTGTGC 369 |||| || || || |||||| | |||| ||| | | ||| | || || |||||||| Sbjct 24271 AAAGGATATGACGAGTGCATGAAAAAAGGACCA-CCTAGTGCTAGGGACCTAATTTGTGC 24329 Query 370 TCAATATGTGGCTGGTTACAAAGTATTACCTCCTCT-TATGGATGTTAATATGGAAGCCG 428 |||||||| ||||||| ||||| ||||| ||| | ||| |||| ||||||||| || Sbjct 24330 ACAATATGTATCTGGTTATAAAGTTTTACCGCCTTTGTAT-GATGCTAATATGGAGGCTA 24388 Query 429 CGTATACTTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCTGGACTGCTGGCTTATCCT 488 ||||||| | ||||| ||| || ||||||||| | ||||| | || |||| | Sbjct 24389 TGTATACTGCTTCTTTAACTGGTAGTATAGCAGGTTCTTTTTGGACAGGAGGACTATCGT 24448 Query 489 CCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGTTAAACGGTGTTGGCATTA 548 | |||||| | |||||||||||| || |||||| | | || ||| ||||||| | Sbjct 24449 CTGCTGCTGCACTACCATTTGCACAGTCAATGTTTTATCGTATGAATGGTATTGGCATCA 24508 Query 549 CTCAACAGGTTCTT-TCAGAGAACCAAAAGCTTATTGCCAATAAGTTTAATCAGGCTCTG 607 ||||| | |||||| | | ||||||| | | || ||||||||||| || ||||| | Sbjct 24509 CTCAAAATGTTCTTATGA-AGAACCAGAGGGAGATAGCCAATAAGTTCAACCAGGCATTA 24567 Query 608 GGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTCAGAAGGTTCAGGATGCT 667 || |||||||||||||| ||||| | || ||| ||||||||||||||||||| |||| | Sbjct 24568 GGTGCTATGCAAACAGGATTCACAGCTACCAATCAAGCTTTTCAGAAGGTTCAAGATGTT 24627 Query 668 GTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGCGAGCTATCTAATACTTTTGGT 727 ||||| ||||||||| || |||| ||||||||||| || || |||| || || ||| Sbjct 24628 GTGAATGCCAATGCACAAGCATTATCTAAATTAGCTAGTGAATTAGCTAACACATTCGGT 24687 Query 728 GCTATTTCCGCCTCTATTGGAGACATCATACAACGTCTT-GATGTTCTCGAACAGGACGC 786 ||||||||| | ||||| || |||||| || |||| ||| |||||| | |||||||| | Sbjct 24688 GCTATTTCCTCTTCTATAGGCGACATCTTAAAACG-CTTGGATGTTTTAGAACAGGAAGT 24746 Query 787 CCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAATGCTTTTGTTGCGCAGCA 846 ||||||||| | |||||||| || ||| | ||| | | ||||| ||||| ||||| Sbjct 24747 GCAAATAGACCGCCTTATTAACGGACGTCTCACATCGTTGAATGCGTTTGTAAGTCAGCA 24806 Query 847 GCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGCTAAAGATAAAGTCAATGA 906 || || | |||| | ||||| | || |||| || |||||||| ||| | ||||| Sbjct 24807 ACTGGTGAGAAGCGAAGCTGCTGCCCGCTCATCTCAGTTAGCTAAAGAGAAAATTAATGA 24866 Query 907 GTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCACACATATAGTGTC 966 |||||||| || ||||||| ||| ||| |||||||| |||||||| ||||||||||| Sbjct 24867 ATGTGTCAAAGCTCAATCCACACGTAGTGGGTTTTGCGGACAAGGCACTCATATAGTGTC 24926 Query 967 CTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGTTGGTTATTACCC 1020 |||||| | ||||| |||||||| | || || || ||||| |||||| |||| Sbjct 24927 ATTTGTTATTAATGCTCCTAATGGGTTCTATTTTATACATGTGGGTTATCACCC 24980 Score = 80.5 bits (43), Expect = 2e-13 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGC-GCG 59 |||||||||||| ||||| ||||| ||||| || || ||||| ||||| || || Sbjct 23961 TGTTGATTGTAAGCAGTATGTTTGTAATGGATTTGAGCGTTGTGAACAATTGTTGGTGC- 24019 Query 60 AGTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAGG 119 |||||||||| |||||||| ||||| || || || | ||||||| ||||| ||||| | Sbjct 24020 AGTATGGCCAATTTTGTTCAAAAATTAATCAAGCATTACATGGTGTTAATTTGCGCCAAG 24079 Query 120 ATGAT 124 ||||| Sbjct 24080 ATGAT 24084 >NC_009020.1 Bat coronavirus HKU5-1, complete genome Length=30482 Score = 372 bits (201), Expect = 3e-101 Identities = 755/1026 (74%), Gaps = 24/1026 (2%) Strand=Plus/Plus Query 1 TGTTGATTGTAAACAGTACGTTTGCAATGGTTTCCAGAAGTGTGAGCAATTACTGCGCGA 60 ||| ||||| || ||||||||||| |||||||| ||||||| || | || || || Sbjct 24134 TGTCGATTGCAAGCAGTACGTTTGTAATGGTTTTAAGAAGTGCGAAGACTTGCTCAAAGA 24193 Query 61 GTATGGCCAGTTTTGTTCCAAAATAAACCAGGCTCTCCATGGTGCCAATTTACGCCAGGA 120 |||||||||||||| || ||||| ||||||||||| |||||||| || |||| || || Sbjct 24194 ATATGGCCAGTTTTGCTCTAAAATTAACCAGGCTCTTCATGGTGCAAACCTACGTCAAGA 24253 Query 121 TGATTCTGTACGTAATTTGTTTGCGAGCGTGAAAATTTATCAATCATC-TCCT-ATCATA 178 || ||| | |||| | ||| | || | |||| | ||| | ||| ||| Sbjct 24254 CGAGTCTATTGCTAATCTATTTTCAAGTATTAAAACCCA-GAATACCCAGCCTCTTCA-G 24311 Query 179 CCAGGTTTTGGA-GGTGACTTTAATTTGAC-A--CTTCTAGAACCTGTTTCTATATCTAC 234 | || ||| | ||||| ||||| ||||| | |||| | |||| | || |||| Sbjct 24312 GC-GGGATTGAATGGTGATTTTAACTTGACTATGCTTCAAATACCT-CAAGT-TA-CTAC 24367 Query 235 TGGCAGTCCT-AGTGCACGTAGTGCTATTGAGGATTTGCTATTTGACAAAGTCACTATAG 293 || | | ||| || | ||| |||| || || | || || | || || ||||| | Sbjct 24368 AGGTGAACGTAAGTACA-GGAGTACTATCGAAGACCTTCTTTTCAATAAGGTTACTATTG 24426 Query 294 CTGATCCTGGTTATATGCAAGGTTACGATGATTGCATGCAGCAAGGTCCAGCA-TCAGCT 352 |||||||||| ||||||||||| || ||||| || |||||||||||||| || |||||| Sbjct 24427 CTGATCCTGGCTATATGCAAGGCTATGATGAATGTATGCAGCAAGGTCCT-CAGTCAGCT 24485 Query 353 CGTGATCTT-ATTTGTGCTCAATATGTGGCTGGTTACAAAGTATTACCTCCTCTTATG-G 410 || || ||| || ||||| |||||||| ||||| |||||||| | || || ||||| | Sbjct 24486 CGAGA-CTTGATCTGTGCACAATATGTTGCTGGCTACAAAGTGCTGCCACC-CTTATATG 24543 Query 411 ATGTTAATATGGAAGCCGCGTATACTTCATCTTTGCTTGGCAGCATAGCAGGTGTTGGCT 470 | |||||||||| || || ||||| || | | ||||| || || |||| | | | Sbjct 24544 ACCCCTATATGGAAGCTGCTTACACTTCTTCCCTATTGGGCAGTATTGCTGGTGCTAGTT 24603 Query 471 GGACTGCTGGCTTATCCTCCTTTGCTGCTATTCCATTTGCACAGAGTATCTTTTATAGGT 530 |||| || || | || || || || || || ||||||||||| |||||||||||| | | Sbjct 24604 GGACAGCAGGTCTGTCGTCTTTCGCAGCAATACCATTTGCACAAAGTATCTTTTATCGCT 24663 Query 531 TAAACGGTGTTGGCATTACTCAACAGGTTCTTTCAGAGAACCAAAAGCTTATTGCCAATA 590 | || ||||||||||| ||||| |||||||| || ||||| || ||| | |||||||| | Sbjct 24664 TGAATGGTGTTGGCATCACTCAGCAGGTTCTGTCTGAGAATCAGAAGATCATTGCCAACA 24723 Query 591 AGTTTAATCAGGCTCTGGGAGCTATGCAAACAGGCTTCACTACAACTAATGAAGCTTTTC 650 | || ||||| ||||| || || |||||||| ||||| ||||| ||||| ||||| Sbjct 24724 AATTCAATCAAGCTCTTGGTGCCATGCAAACTGGCTTTACTACTACTAACCTTGCTTTCA 24783 Query 651 AGAAGGTTCAGGATGCTGTGAACAACAATGCACAGGCTCTATCCAAATTAGCTAGC-GAG 709 | |||||||||||||| || || |||||| |||||| |||||| ||||| || || Sbjct 24784 ACAAGGTTCAGGATGCAGTAAATGCTAATGCAATGGCTCTTTCCAAACTAGCT-GCGGAA 24842 Query 710 CTATCTAATACTTTTGGTGCTATTTCCGCCTCTATTGGAGACATCATA-CAACGTCTTGA 768 | ||||| ||||| ||||||||||| | || || | |||||| | ||| | ||||| Sbjct 24843 TTGTCTAACACTTTCGGTGCTATTTCATCATCAATCAGTGACATCCTTGCAAGG-CTTGA 24901 Query 769 TGTTCTCGAACAGGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACACTAAA 828 | | ||||| || || ||||| || | | || ||||| ||| | ||| | || || Sbjct 24902 CACTGTTGAACAAGAGGCTCAAATTGATCGGTTGATCAATGGACGTCTTACATCCCTTAA 24961 Query 829 TGCTTTTGTTGCGCAGCAGCTTGTTCGTTCCGAATCAGCTGCTCTTTCGGCTCAATTGGC 888 || || |||||||| || || || ||| | ||| | |||||| || || |||||||| Sbjct 24962 CGCATTCGTTGCGCAACAACTCGTGCGTACTGAAGCTGCTGCTAGATCTGCCCAATTGGC 25021 Query 889 TAAAGATAAAGTCAATGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCA 948 | ||||||| ||||||||||| || ||| | |||||||| || |||||| ||||| Sbjct 25022 TCAAGATAAGGTCAATGAGTGCGTGAAGTCGCAATCCAAACGGAATGGATTCTGCGGAAC 25081 Query 949 AGGCACACATATAGTGTCCTTTGTTGTAAATGCCCCTAATGGCCTTTACTTCATGCATGT 1008 ||||||||||| || || |||| | ||||| ||||||||||| |||||| | ||||| Sbjct 25082 TGGCACACATATTGTTTCATTTGCCATTAATGCTCCTAATGGCCTCTACTTCTTCCATGT 25141 Query 1009 TGGTTA 1014 |||||| Sbjct 25142 TGGTTA 25147 >NC_030886.1 Rousettus bat coronavirus isolate GCCDC1 356, complete genome Length=30161 Score = 58.4 bits (31), Expect = 9e-07 Identities = 47/55 (85%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 904 TGAGTGTGTCAAGGCACAATCCAAGCGTTCTGGATTTTGCGGTCAAGGCACACAT 958 |||||||||||| ||||||||| ||||| || ||||||||| | ||||||||| Sbjct 24252 TGAGTGTGTCAAAGCACAATCCCAGCGTAATGACTTTTGCGGTAATGGCACACAT 24306 >NC_017083.1 Rabbit coronavirus HKU14, complete genome Length=31100 Score = 56.5 bits (30), Expect = 3e-06 Identities = 69/88 (78%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 764 CTTGATGTTCTCGAA-CAGGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAAC 822 || |||| ||| ||| || | ||||| |||||||||||||||||||| ||| | || | Sbjct 27021 CTCGATGCTCTTGAAGCA-GCTGCCCAGATAGACAGACTTATTAATGGGCGTCTTACCGC 27079 Query 823 ACTAAATGCTTTTGTTGCGCAGCAGCTT 850 || ||||||| |||| | || |||||| Sbjct 27080 TCTTAATGCTTATGTTTCCCAACAGCTT 27107 >NC_006213.1 Human coronavirus OC43 strain ATCC VR-759, complete genome Length=30741 Score = 56.5 bits (30), Expect = 3e-06 Identities = 68/87 (78%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 764 CTTGATGTTCTCGAACAGGACGCCCAAATAGACAGACTTATTAATGGCCGTTTGACAACA 823 ||||||| ||| ||| ||| || || ||||| |||||||||||||| ||| | || | Sbjct 26844 CTTGATGCTCTTGAAGCGGAAGCTCAGATAGATAGACTTATTAATGGTCGTCTTACCGCT 26903 Query 824 CTAAATGCTTTTGTTGCGCAGCAGCTT 850 || ||||||| |||| | || |||||| Sbjct 26904 CTTAATGCTTATGTTTCTCAACAGCTT 26930 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 322815542908 Database: Refseq viruses representative genomes Posted date: Apr 25, 2020 8:46 PM Number of letters in database: 317,448,394 Number of sequences in database: 12,171 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5