Processed file: dirigent.mafft.fsa
Number of sequences: 9
Alignment assumed to be: Protein
New number of positions: 98 (selected positions are underlined in blue)
10 20 30 40 50
=========+=========+=========+=========+=========+
NP_001149637 MA-------------YCAFAP---SAPPQYSELKMTLYTNKEVYRSGPDQ
ACG36197 MA-------------YCAFAP---SAPPQYSELKMTLYTNKEVYRSGPDQ
NP_001151815 ------------------MAPPSYSIAPVQSELNMTLY-NKEVY-GGRGT
ACG44408 ------------------MAPPSYSIAPVQSELNMTLY-NKEVY-GGRGT
AFW85679 ------------------MAPHSYSIAPVQSELNMTLY-NKEVY-GGRGT
AAR00251 MASLRSVLAVSLAVALFAVAPA--SFALDEKELHLSLYLNQT-Y-SGNGL
NP_001148703 MA---FYYAIALLGMLAVFSSG--GNALDDNMLKTTVYIQQLPYQN----
ACG32587 MA---FYYAIALLGMLAVFSSG--GNALDDNMLKTTVYIQQLPYQN----
AFW71146 MA---FYYAIALLGMLAVFSSW--GNALDDNMLKTTVYIQQLPYQN----
############
60 70 80 90 100
=========+=========+=========+=========+=========+
NP_001149637 NGV-TIT--ERSNMGTTWVFSWPVADGPT--PDANIVGQLQGTSVQVANT
ACG36197 NGV-TIT--ERSNMGTTWVFSWPVADGPT--PDANIVGQLQGTSVQVANT
NP_001151815 NGVTTLV--NRGPIGTTWVFSWPVTDGPAGGADANVVGHLQGTGVQVATY
ACG44408 NGVTTLV--NRGPIGTTWVFSWPVTDGPAGGADANVVGHLQGTGVQVATY
AFW85679 NGVTTLV--NRGPIGTTWVFSWPVTDGPA-GADANVVGHLQGTGVQVATY
AAR00251 NEAVVVEPGLPGEFGNIAVQDWPVTNGEG--SDATVVGRAQGIQFKPSER
NP_001148703 ---------QRGVAEGTAVISWYIKDGPG--ASANTIGHAEGLVI-LTDI
ACG32587 ---------QRGVAEGTAVISWYIKDGPG--ASANTIGHAEGLVI-LTDI
AFW71146 ---------QRGVAEGTAVISWYIKDGPG--ASANTIGHAEGLVI-LTDI
################## ############## ####
110 120 130 140 150
=========+=========+=========+=========+=========+
NP_001149637 PVVVYHYSLGLVF-EDKRFNGSTLQIQGTSQINGEWSIVGGTGQLTMAMG
ACG36197 PVVVYHYSLGLVF-EDKRFNGSTLQIQGTSQINGEWSIVGGTGQLTMAMG
NP_001151815 PDYMWHYSLGLVFGQGSRFNGSTLQIQGTSKINGEWSIVGGTGELAMAKG
ACG44408 PDYMWHYSLGLVFGQGSRFNGSTLQIQGTSKINGEWSIVGGTGELAMAKG
AFW85679 PDYMWHYSLGLVFGQGSRFNGSTLQIQGTSKINGEWSIVGGTGELAMAKG
AAR00251 NDQAWYTTLTIVF-EGTSLKGSTLQMMGYIPQDGQWSIFGGTGQLTLARG
NP_001148703 ARSSWLITTDLVF-DGGSLAGSSLQVMGQHESSGQWSIMGGTGQFTMARG
ACG32587 ARSSWLITTDLVF-DGGSLAGSSLQVMGQHESSGQWSIMGGTGQFTMARG
AFW71146 ARSSCLITTDLVF-DGGSLAGSSLQVMGQHESSGQWSIMGGTGQFTMARG
############# ###################################
160 170 180 190
=========+=========+=========+=========+====
NP_001149637 TVKRTEVVYKDNTRISELKIHAYFAPVN----------------
ACG36197 TVKRTEVVYKDNTRISELKIHAYFAPVN----------------
NP_001151815 TVRRTEISYTGNIRISELNIHVLYTPM-----------------
ACG44408 TVRRTEISYTGNIRISELNIHVLYTPM-----------------
AFW85679 TVRRTEVSYTGNIRISELNIHVLYTPM-----------------
AAR00251 VVNHKVVRQTNGGRMYKINIHAFYTPLGASTNCGINLWRLDFDA
NP_001148703 VIEYKTIQEDSSSRTFEVCIYAYYTPMNG-WKAGLALGDTGSKP
ACG32587 VIEYKTIQEDSSSRTFEVCIYAYYTPMNG-WKAGLALGDTGSKP
AFW71146 VI------------------------------------------
##
Parameters used Minimum Number Of Sequences For A Conserved Position: 5 Minimum Number Of Sequences For A Flanking Position: 7 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None Use Similarity Matrices: Yes
Flank positions of the 5 selected block(s) Flanks: [27 38] [61 78] [82 95] [97 113] [116 152] New number of positions in dirigent.mafft.fsa.fsa: 98 (50% of the original 194 positions)