LOCUS NC_027766 5294 bp DNA linear CON 24-JAN-2018 DEFINITION Brassica napus cultivar ZS11 chromosome A10, Bra_napus_v2.0, whole genome shotgun sequence. ACCESSION NC_027766 REGION: 17537355..17542648 VERSION NC_027766.2 DBLINK BioProject: PRJNA293435 BioSample: SAMN02742820 Assembly: GCF_000686985.2 KEYWORDS WGS; RefSeq. SOURCE Brassica napus (rape) ORGANISM Brassica napus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT REFSEQ INFORMATION: The reference sequence is identical to CM002768.2. On Oct 4, 2017 this sequence version replaced NC_027766.1. Assembly name: Bra_napus_v2.0 The genomic sequence for this RefSeq record is from the whole-genome assembly released by the BGI-Shenzhen on 2017/09/15. The original whole-genome shotgun project has the accession JMKK00000000.2. ##Genome-Assembly-Data-START## Assembly Provider :: BGI-Shenzhen Assembly Method :: SOAPdenovo v. 2; Celera v. 8.3rc2 Assembly Name :: Bra_napus_v2.0 Expected Final Version :: Yes Genome Coverage :: 200x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Brassica napus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5294 /organism="Brassica napus" /mol_type="genomic DNA" /cultivar="ZS11" /db_xref="taxon:3708" /chromosome="A10" gene complement(631..4094) /gene="LOC106430847" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:106430847" mRNA complement(join(631..897,1005..4094)) /gene="LOC106430847" /product="receptor-like protein 12" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns" /transcript_id="XM_013871643.2" /db_xref="GeneID:106430847" CDS complement(1009..4050) /gene="LOC106430847" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /codon_start=1 /product="receptor-like protein 12" /protein_id="XP_013727097.1" /db_xref="GeneID:106430847" /translation="MQTCSSQFPFSCVKNMKGSVKSFSLIPISFCFLFLFRDEFAVPA RHLCHPQQREAILELKNEFHIQKPCSDDRTVSWVNNSDCCSWDGIRCDATFGDVIELN LGGNCIHGELNSKNTILKLQSLPFLATLDLSDNYFSGNIPSSLGNLSKLTTLDLSDND FNGEIPSSLGNLSNLTTLDLSYNAFNGEIPSSLGNLSNLTTLDLSYNAFNGEIPSSLG NLSNLTTLDLSYNAFNGEIPSSLGNLSNLTILKLSQNKLIGKIPPSLGNLSYLTHLTL CANNLVGEIPYSLANLSHHLTFLNICENSFSGEIPSFLGNFSLLTLLDLSANNFVGEI PSSFGRLKHLTILSAGENKLTGNFPVTLLNLTKLLDLSLGYNQFTGMLPPNVSLLSNL EAFSIGGNALTGTLPSSLFSIPSLTYVSLENNQLNGTLDFGNVSSSSKLMQLRLGNNN FLGSIPRAISKLVNLDTLDLSHLNTQGSSVDLSILWNLKSLVELDISDLNTTTAIDLN DILSRFKWLDTLNLTGNHVTYEKRISVSDPPLLRDLYLSGCRFTTEFPGFIRTQHNME ALDISNNKIKGQVPGWLWELSTLYYLNLSNNTFTSFESPNKLRQPSSLYYFSGANNNF TGGIPSFICELHSLIILDLSSNRFNGSLPRCVGKFSSVLEALNLRQNRLSGRLPKKII SRGLKSLDIGHNKLVGKLPRSLIANSSLEVLNVESNRFNDTFPSWLSSLPELQVLVLR SNAFHGPIHQTRFYKLRIIDISHNRFNGTLPLDFFVNWTSMHFIGKNGVQSNGNYMGT RRYYFDSMVLMNKGIEMELVRILYIYTALDFSENEFEGVIPSSIGLLKELHVLNLSGN AFTGRIPSSMGNLSSLESLDLSRNKLTGEIPQELGNLSYLAYMNFSHNQLVGLVPGGT QFRTQPCSSFKDNPGLFGPSLNQACVDIHGKTSQPSEMSKEEEEDGQEEVISWIAAAI GFIPGIAFGFTMEYIMVSYKPEWFINLFGRTKRRRISTTRR" CONTIG join(NW_019168544.1:1..22217278) ORIGIN 1 gtggcttctc cgtttcttgc gttgtatgtg ttcttttggc ttggtttcac aggtcctgaa 61 gtggttcatc ttcggctttg atttgttccg ttgaagcgct ggtggtgacg gtgtagaata 121 gaggcggcga tttggctttg gcgacattgt tgcatctgtg ggagatgatt ctcgaggcta 181 ctttagcttg aggatgtggt cggaggcggc ttttctgact gcccgtagaa gctcctgtgc 241 cgctagatgt aacttgttgt ttgaagttgt ctcgtttttg tgttagtctt cggagaagct 301 gtaggcgtta cccgcgtttg aggttttgag ggcagcctta agtggtgatg ctcgtggcaa 361 cgacgatgag gactcaagat cttaggatct gtggcaacaa cacaaatgtc cgagctttag 421 ggtttggaat cggtgtttct acatgttgga tcttctagtt gcttagatgt gttcttgttg 481 attgtgacca ttttttggtt tctgctgtta cttagtctta gttttagatt ttaattactc 541 tgctttcttt gttttctctt tgtaatctct gtcaaaaatt aaaattggta taaaatttaa 601 cattttacca aaaaaaaaaa aaaaaggaag aagtgaaaaa gacatgtgtg actgtgaaat 661 cagctacttc tgttttactg agatatagag atacagagag catagtgaat cagatacgca 721 caatacaaaa gatcaaacaa caactaaaac ttataacgtg atataatctg tctgatgcga 781 aacaaaaata ttttgaatta tctgaaatga ttttaatcca accttctttc tttgcaggcc 841 ttctagtttg gttggttgat tttattcttt gagattcttc ccttaggttt aagaaagcta 901 tacaaaatag gaaatatcaa tacataatta catttattga ttcactgaga caaatctagt 961 atttagtttt aatttagaaa aagaaaacag tttgagaaga ttacctcttt aacgacgtgt 1021 ggtgcttatc cttctgcgtt tggttcggcc aaaaaggttt ataaaccact ctggtttgta 1081 ggaaaccatt atgtattcca tcgtgaatcc aaatgcaata ccaggtatga aaccaattgc 1141 agctgctatc caacttatca cctcctcttg gccatcttct tcttcttcct ttgacatttc 1201 agacggttgt gatgttttcc cgtggatatc tacacaagct tgattaagtg aagggccaaa 1261 aagtcccggg ttgtccttga aagaactgca aggctgcgtc cgaaactgag tgccccctgg 1321 cactagaccc acaagctggt tatgagagaa gttcatgtaa gcaaggtagg agaggttccc 1381 tagctcttgc ggaatttctc ctgtaagctt gtttctggaa aggtccagtg actcgagaga 1441 cgagaggttc cccatagacg acgggatacg gccagtgaac gcattgcctg ataagttgag 1501 cacgtgaagc tctttcaaca aaccgatgga cgatggaatc actccttcga attcgttctc 1561 cgaaaagtct agcgcagtgt agatatataa gatacgtacc agctccatct ctatgccttt 1621 attcatcaaa accattgaat caaaataata tcttctagta cccatgtagt ttccgttaga 1681 ttgaactcca ttttttccga taaagtgcat tgatgtccag ttcacaaaga agtccaacgg 1741 caacgttccg ttgaaccgat tatgcgatat gtctatgatt cgcagtttat aaaaccgagt 1801 ttgatgtatc ggtccatgga acgcattgga gcgaaggaca agaacttgta gctcggggag 1861 agaactcaac caggatggaa acgtgtcgtt gaatctgttg ctttccacat tcaaaacttc 1921 aagagaagag ttagcgatca aagatctcgg aagctttcca accagtttgt tatgaccgat 1981 gtccaaagac tttagacctc ttgatataat cttctttgga agacgtccgc tgagacgatt 2041 ttgtctaaga tttagagctt caaggacact actgaacttt ccgacacaac gcggtaatga 2101 accgttgaat ctgttgctag ataaatcgag aatgattaga gagtgcaact cacatatgaa 2161 actggggatc ccgcccgtga aattgttgtt ggcgccggaa aagtaataca gagaggatgg 2221 ttgccggagt ttattcggac tttcgaaact ggtgaaagtg ttgttggaga gattcaggta 2281 atatagagtt gatagctccc ataaccatcc agggacttga cctttgattt tgttgttgga 2341 aatgtctagt gcttccatgt tgtgttgagt tcgtatgaac cctggaaact cggtggtgaa 2401 tctgcatcct gacaagtaca gatctcttaa taacggagga tctgaaactg aaattctctt 2461 ttcatacgta acgtggtttc ccgtgagatt cagtgtatcc agccacttga aacgtgataa 2521 gatatcattc aagtcaatcg cagtggtggt gttcaagtcg gagatgtcga gttctacgag 2581 tgacttgaga ttccagagaa tgctaaggtc aactgatgag ccttgggtgt tgagatgcga 2641 aaggtcaagt gtatcaaggt tgactaattt ggagatggct ctgggaatcg atcccaagaa 2701 gttgttattc ccaaggcgta gttgcattag ctttgatgat gaagatacgt tcccaaaatc 2761 aagtgtaccg tttagttggt tattttccaa actaacgtaa gtcaaagaag ggatgctaaa 2821 gagggaagaa ggaagagttc cagttaaagc gttcccacct atggaaaagg cctccaagtt 2881 ggagagtaag cttacgttag gtggaagcat gcctgtgaac tggttgtaac caagtgataa 2941 atctaacaat tttgttagat ttagtagcgt aacaggaaag ttaccagtaa gcttgttttc 3001 tccagcggat aagatggtga gatgtttcaa tctgccgaaa gaagatggga tttccccgac 3061 gaaattgttt gctgagagat cgagtaaggt cagaagtgaa aaatttccca agaatgatgg 3121 aatttcacca gaaaaactgt tttcgcatat attaagaaag gtgagatgat gagaaaggtt 3181 tgcaagtgag tatggaattt caccaaccaa gttgttagca caaagtgtaa gatgggtgag 3241 atacgaaagg tttccaagtg aaggtgggat tttaccaata agtttgttct gggagagttt 3301 gagaatggtg aggttagaaa ggtttccaag tgaagatggg atttcaccat taaaagcatt 3361 atatgaaaga tcaagagtgg tgaggttaga aaggtttcca agtgaagatg ggatttcacc 3421 attaaaagca ttatatgaaa gatcaagagt ggtgaggtta gaaaggtttc caagtgaaga 3481 tgggatttca ccattaaaag cattatatga aagatcaaga gtggtgaggt tagaaaggtt 3541 tccaagtgaa gatgggattt caccattaaa atcattatct gaaagatcaa gagtggttag 3601 cttagaaaga tttccaagcg aagatggaat gttaccactg aaataattgt ctgaaaggtc 3661 gagagttgct aaaaaaggaa gactttgaag cttcaaaata gtgtttttgg aattgagctc 3721 gccatggatg cagttgccac caaggttcag ctcaatcaca tccccaaaag tggcatcaca 3781 tctgatacca tcccaagaac aacagtcgct gttattcacc catgacaccg tccggtcgtc 3841 agaacaaggc ttctgaatat ggaactcgtt cttcaactcc agaattgctt ccctttgctg 3901 aggatggcac aagtgtctag caggaaccgc aaactcatca cgaaataaga agagaaaaca 3961 aaaggaaata ggaatgagac taaatgattt cacagagcct ttcatattct ttacacagga 4021 aaatggaaac tgtgatgaac atgtttgcat gctcgcctta tcagacaata tacagtctcc 4081 ccccaccaca aatttttttt tttttttttt ttgaattata cacagtttcc ccaaaggctt 4141 cccaggccca agggactaat ctgtgtcgct gcggcccgaa tgttaaattt cgcagtggcc 4201 gggaatcgaa accaggtggc ggtactcaca gctgtgagcc ctttaccacc agagctagat 4261 gccccggttc acaaatttct tttccgtctt tttgtttttg ttcttttttc caacttcttc 4321 tccggtttat tattattttc ttcgtatgac ttttctccct tttggtaacg acgagtgtcg 4381 acgactcgca tggttgactt gacaatttat ccaaattcat atagcttaat tagtttgtac 4441 ttatcctaat taaatttcta taagcaaaat aactcgctaa tttttttgac aaaaataaaa 4501 ctcactaatt tactctcgct gccgcatatc aacgattata gtgctagtta atttgttgac 4561 tgcgcaatta tcgtgcgaaa ttatgtttcc atccaaactc tattaatttt atctctttac 4621 tttgcattac aattgttttt ttattgaata caattaaaca ttcatattaa aatattgcaa 4681 attttgaata atgtaattca tcgaaagttt gaaacagaaa ccttttagaa gtggaaatcc 4741 atttcgttaa atggtttaac taagggttca ttaatatttc tataccagga ggtttgagat 4801 tcaaatccca aaaaatacaa attatgaaaa aaaaaatagt tataagagat ttttagtatg 4861 gtgcatggcg tatcatcgaa catgaatttc atagggcgac tcagagtgac gcagtcaaac 4921 gtatattttc atatggtgat agaattgtcg gataaaattg tcggctgtaa tagcatactt 4981 aattagacgt taaaaaaaaa actttttaga aagtgacaat aaatgaataa tgtaattcat 5041 tgaaagtttg aaacagaaac cttttagaaa gtgacaacaa atgaaacata acgtaattca 5101 tttttagcga atctatagta ttacaaagag acctaaacaa atagaagaat gtaataagtt 5161 tgcccacgtt attacacgta gcattaataa atgagtttac gacttgactt ttctttgggg 5221 tttcttcctg ggctcatcac ttaaatgact cgttacaaat tacagcagac caacggttca 5281 actaaccacc acca //