LOCUS NC_027766 3464 bp DNA linear CON 24-JAN-2018 DEFINITION Brassica napus cultivar ZS11 chromosome A10, Bra_napus_v2.0, whole genome shotgun sequence. ACCESSION NC_027766 REGION: 17537985..17541448 VERSION NC_027766.2 DBLINK BioProject: PRJNA293435 BioSample: SAMN02742820 Assembly: GCF_000686985.2 KEYWORDS WGS; RefSeq. SOURCE Brassica napus (rape) ORGANISM Brassica napus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT REFSEQ INFORMATION: The reference sequence is identical to CM002768.2. On Oct 4, 2017 this sequence version replaced NC_027766.1. Assembly name: Bra_napus_v2.0 The genomic sequence for this RefSeq record is from the whole-genome assembly released by the BGI-Shenzhen on 2017/09/15. The original whole-genome shotgun project has the accession JMKK00000000.2. ##Genome-Assembly-Data-START## Assembly Provider :: BGI-Shenzhen Assembly Method :: SOAPdenovo v. 2; Celera v. 8.3rc2 Assembly Name :: Bra_napus_v2.0 Expected Final Version :: Yes Genome Coverage :: 200x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Brassica napus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3464 /organism="Brassica napus" /mol_type="genomic DNA" /cultivar="ZS11" /db_xref="taxon:3708" /chromosome="A10" gene complement(1..3464) /gene="LOC106430847" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:106430847" mRNA complement(join(1..267,375..3464)) /gene="LOC106430847" /product="receptor-like protein 12" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns" /transcript_id="XM_013871643.2" /db_xref="GeneID:106430847" CDS complement(379..3420) /gene="LOC106430847" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /codon_start=1 /product="receptor-like protein 12" /protein_id="XP_013727097.1" /db_xref="GeneID:106430847" /translation="MQTCSSQFPFSCVKNMKGSVKSFSLIPISFCFLFLFRDEFAVPA RHLCHPQQREAILELKNEFHIQKPCSDDRTVSWVNNSDCCSWDGIRCDATFGDVIELN LGGNCIHGELNSKNTILKLQSLPFLATLDLSDNYFSGNIPSSLGNLSKLTTLDLSDND FNGEIPSSLGNLSNLTTLDLSYNAFNGEIPSSLGNLSNLTTLDLSYNAFNGEIPSSLG NLSNLTTLDLSYNAFNGEIPSSLGNLSNLTILKLSQNKLIGKIPPSLGNLSYLTHLTL CANNLVGEIPYSLANLSHHLTFLNICENSFSGEIPSFLGNFSLLTLLDLSANNFVGEI PSSFGRLKHLTILSAGENKLTGNFPVTLLNLTKLLDLSLGYNQFTGMLPPNVSLLSNL EAFSIGGNALTGTLPSSLFSIPSLTYVSLENNQLNGTLDFGNVSSSSKLMQLRLGNNN FLGSIPRAISKLVNLDTLDLSHLNTQGSSVDLSILWNLKSLVELDISDLNTTTAIDLN DILSRFKWLDTLNLTGNHVTYEKRISVSDPPLLRDLYLSGCRFTTEFPGFIRTQHNME ALDISNNKIKGQVPGWLWELSTLYYLNLSNNTFTSFESPNKLRQPSSLYYFSGANNNF TGGIPSFICELHSLIILDLSSNRFNGSLPRCVGKFSSVLEALNLRQNRLSGRLPKKII SRGLKSLDIGHNKLVGKLPRSLIANSSLEVLNVESNRFNDTFPSWLSSLPELQVLVLR SNAFHGPIHQTRFYKLRIIDISHNRFNGTLPLDFFVNWTSMHFIGKNGVQSNGNYMGT RRYYFDSMVLMNKGIEMELVRILYIYTALDFSENEFEGVIPSSIGLLKELHVLNLSGN AFTGRIPSSMGNLSSLESLDLSRNKLTGEIPQELGNLSYLAYMNFSHNQLVGLVPGGT QFRTQPCSSFKDNPGLFGPSLNQACVDIHGKTSQPSEMSKEEEEDGQEEVISWIAAAI GFIPGIAFGFTMEYIMVSYKPEWFINLFGRTKRRRISTTRR" CONTIG join(NW_019168544.1:1..22217278) ORIGIN 1 aagtgaaaaa gacatgtgtg actgtgaaat cagctacttc tgttttactg agatatagag 61 atacagagag catagtgaat cagatacgca caatacaaaa gatcaaacaa caactaaaac 121 ttataacgtg atataatctg tctgatgcga aacaaaaata ttttgaatta tctgaaatga 181 ttttaatcca accttctttc tttgcaggcc ttctagtttg gttggttgat tttattcttt 241 gagattcttc ccttaggttt aagaaagcta tacaaaatag gaaatatcaa tacataatta 301 catttattga ttcactgaga caaatctagt atttagtttt aatttagaaa aagaaaacag 361 tttgagaaga ttacctcttt aacgacgtgt ggtgcttatc cttctgcgtt tggttcggcc 421 aaaaaggttt ataaaccact ctggtttgta ggaaaccatt atgtattcca tcgtgaatcc 481 aaatgcaata ccaggtatga aaccaattgc agctgctatc caacttatca cctcctcttg 541 gccatcttct tcttcttcct ttgacatttc agacggttgt gatgttttcc cgtggatatc 601 tacacaagct tgattaagtg aagggccaaa aagtcccggg ttgtccttga aagaactgca 661 aggctgcgtc cgaaactgag tgccccctgg cactagaccc acaagctggt tatgagagaa 721 gttcatgtaa gcaaggtagg agaggttccc tagctcttgc ggaatttctc ctgtaagctt 781 gtttctggaa aggtccagtg actcgagaga cgagaggttc cccatagacg acgggatacg 841 gccagtgaac gcattgcctg ataagttgag cacgtgaagc tctttcaaca aaccgatgga 901 cgatggaatc actccttcga attcgttctc cgaaaagtct agcgcagtgt agatatataa 961 gatacgtacc agctccatct ctatgccttt attcatcaaa accattgaat caaaataata 1021 tcttctagta cccatgtagt ttccgttaga ttgaactcca ttttttccga taaagtgcat 1081 tgatgtccag ttcacaaaga agtccaacgg caacgttccg ttgaaccgat tatgcgatat 1141 gtctatgatt cgcagtttat aaaaccgagt ttgatgtatc ggtccatgga acgcattgga 1201 gcgaaggaca agaacttgta gctcggggag agaactcaac caggatggaa acgtgtcgtt 1261 gaatctgttg ctttccacat tcaaaacttc aagagaagag ttagcgatca aagatctcgg 1321 aagctttcca accagtttgt tatgaccgat gtccaaagac tttagacctc ttgatataat 1381 cttctttgga agacgtccgc tgagacgatt ttgtctaaga tttagagctt caaggacact 1441 actgaacttt ccgacacaac gcggtaatga accgttgaat ctgttgctag ataaatcgag 1501 aatgattaga gagtgcaact cacatatgaa actggggatc ccgcccgtga aattgttgtt 1561 ggcgccggaa aagtaataca gagaggatgg ttgccggagt ttattcggac tttcgaaact 1621 ggtgaaagtg ttgttggaga gattcaggta atatagagtt gatagctccc ataaccatcc 1681 agggacttga cctttgattt tgttgttgga aatgtctagt gcttccatgt tgtgttgagt 1741 tcgtatgaac cctggaaact cggtggtgaa tctgcatcct gacaagtaca gatctcttaa 1801 taacggagga tctgaaactg aaattctctt ttcatacgta acgtggtttc ccgtgagatt 1861 cagtgtatcc agccacttga aacgtgataa gatatcattc aagtcaatcg cagtggtggt 1921 gttcaagtcg gagatgtcga gttctacgag tgacttgaga ttccagagaa tgctaaggtc 1981 aactgatgag ccttgggtgt tgagatgcga aaggtcaagt gtatcaaggt tgactaattt 2041 ggagatggct ctgggaatcg atcccaagaa gttgttattc ccaaggcgta gttgcattag 2101 ctttgatgat gaagatacgt tcccaaaatc aagtgtaccg tttagttggt tattttccaa 2161 actaacgtaa gtcaaagaag ggatgctaaa gagggaagaa ggaagagttc cagttaaagc 2221 gttcccacct atggaaaagg cctccaagtt ggagagtaag cttacgttag gtggaagcat 2281 gcctgtgaac tggttgtaac caagtgataa atctaacaat tttgttagat ttagtagcgt 2341 aacaggaaag ttaccagtaa gcttgttttc tccagcggat aagatggtga gatgtttcaa 2401 tctgccgaaa gaagatggga tttccccgac gaaattgttt gctgagagat cgagtaaggt 2461 cagaagtgaa aaatttccca agaatgatgg aatttcacca gaaaaactgt tttcgcatat 2521 attaagaaag gtgagatgat gagaaaggtt tgcaagtgag tatggaattt caccaaccaa 2581 gttgttagca caaagtgtaa gatgggtgag atacgaaagg tttccaagtg aaggtgggat 2641 tttaccaata agtttgttct gggagagttt gagaatggtg aggttagaaa ggtttccaag 2701 tgaagatggg atttcaccat taaaagcatt atatgaaaga tcaagagtgg tgaggttaga 2761 aaggtttcca agtgaagatg ggatttcacc attaaaagca ttatatgaaa gatcaagagt 2821 ggtgaggtta gaaaggtttc caagtgaaga tgggatttca ccattaaaag cattatatga 2881 aagatcaaga gtggtgaggt tagaaaggtt tccaagtgaa gatgggattt caccattaaa 2941 atcattatct gaaagatcaa gagtggttag cttagaaaga tttccaagcg aagatggaat 3001 gttaccactg aaataattgt ctgaaaggtc gagagttgct aaaaaaggaa gactttgaag 3061 cttcaaaata gtgtttttgg aattgagctc gccatggatg cagttgccac caaggttcag 3121 ctcaatcaca tccccaaaag tggcatcaca tctgatacca tcccaagaac aacagtcgct 3181 gttattcacc catgacaccg tccggtcgtc agaacaaggc ttctgaatat ggaactcgtt 3241 cttcaactcc agaattgctt ccctttgctg aggatggcac aagtgtctag caggaaccgc 3301 aaactcatca cgaaataaga agagaaaaca aaaggaaata ggaatgagac taaatgattt 3361 cacagagcct ttcatattct ttacacagga aaatggaaac tgtgatgaac atgtttgcat 3421 gctcgcctta tcagacaata tacagtctcc ccccaccaca aatt //