LOCUS NC_063443 5235 bp DNA linear CON 23-JUN-2022 DEFINITION Brassica napus cultivar Da-Ae chromosome A10, Da-Ae, whole genome shotgun sequence. ACCESSION NC_063443 REGION: 16542422..16547656 VERSION NC_063443.1 DBLINK BioProject: PRJNA844685 BioSample: SAMN14670173 Assembly: GCF_020379485.1 KEYWORDS WGS; RefSeq. SOURCE Brassica napus (rape) ORGANISM Brassica napus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT REFSEQ INFORMATION: The reference sequence is identical to CM035455.1. Assembly name: Da-Ae The genomic sequence for this RefSeq record is from the whole-genome assembly released by the None on 2021/10/08. The original whole-genome shotgun project has the accession JAGKQM000000000.1. ##Genome-Assembly-Data-START## Assembly Provider :: None Assembly Date :: 26-JUN-2019 Assembly Method :: Canu v. 1.6; Pilon v. 1.22; HiRise v. FEB-2018 Assembly Name :: Da-Ae Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100.0x Sequencing Technology :: PacBio Sequel; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Brassica napus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5235 /organism="Brassica napus" /mol_type="genomic DNA" /cultivar="Da-Ae" /db_xref="taxon:3708" /chromosome="A10" /tissue_type="Seedling" /dev_stage="Seedling" /country="USA" gene complement(676..3662) /gene="LOC111211017" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:111211017" mRNA complement(join(676..959,1056..3662)) /gene="LOC111211017" /product="receptor-like protein 33" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /transcript_id="XM_048742387.1" /db_xref="GeneID:111211017" CDS complement(1140..3410) /gene="LOC111211017" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /codon_start=1 /product="receptor-like protein 33" /protein_id="XP_048598344.1" /db_xref="GeneID:111211017" /translation="MQTCSSQFPFSCVKNMKGSVKSFSLIPISFCFLFLFRDEFAVPA RHLCHPQQREAILELKKEFQIQKPCFNRSPKTVSWVNNSDCCSWDGIRCDATFGDVIE LNLGGNCIHGELNSKNTILKLQSLPFLATLDLSDNYFSGNIPSSLGNLSKLTTLDLSD NAFNGEIPSSLGKLYNLTILNLSWNNLIGKIPSSFGRLKHLTDLSAEQNKLTGNIPVT LLNLTKLLDLSLDYNQFTGMLPPNVSSLSNLEVFYIDCNALTGTLPSSLFSIPSLLYV TLEDNQLNGTLDFGNVSSSSKLMQLLLGNNNFVGSIPRSISKLVNLDTLDLSHLNTQG LALDLSILWNLKSLVELDISDLNTTTAIDLNDILSRFKWLDKLNLTGNHVTYEKRSSV SDHPSLSYLYLSGCGITTKFLEPLRTQHNMWRLDISNNKIKGQVPGWLWELSTLQYLD LSNNTFTSFESPNKLRQPSSLEYFSGANNNFTGRIPSFICELRSLTVLDLSNNKFNGS FPRCIGKFSSFLEALNLRQNRLSGRLPKKIISRGLKSLDIGHNNFVGKLPRSLIVSSF LEVLNVESNRFNDTFPSWLSSLPELQVLVLRSNAFHGPVHQTRFSKLRIIDISHNRFN GTLPSDFFVNWTAMHSIGKDEDQSYGQYMSIYYYFDSMVLMNKGVEMELVRILTIYTA LDFSENEFEGVIPSSIGLLKELLVLNLSGNAFTGHIPSSMGNLSSLESLDLSRNKLTG AIPQELVLHLDSRWDT" gene 4692..>5235 /gene="LOC106430932" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:106430932" mRNA 4692..>5235 /gene="LOC106430932" /product="diaminopimelate decarboxylase 2, chloroplastic" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /transcript_id="XM_013871726.3" /db_xref="GeneID:106430932" CDS 4797..>5235 /gene="LOC106430932" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /codon_start=1 /product="diaminopimelate decarboxylase 2, chloroplastic" /protein_id="XP_013727180.2" /db_xref="GeneID:106430932" /translation="MASATQLLSQPPSLRGNLNRYQSSLPRISVLSLKSTSKPLNRLS VKAAAAASQNSVITPTKDAAFEHCFKKSSDGFLYCEGTKVEEIMESVERRPFYLYSKP QITRNVEAYKEALEGVSSVIGYAIKANNNLKILEHLRSKGCGAVLVSGNELRLALIAG FDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVEASRISGKQVNVLLRINP DVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHPNELKLVGAHCHLGSTITKVDI FRDAAVLMVEYIDEIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLS RDLNLIIEPGRSLIANTCCFVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE LVSPPAPEAEVSKFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTY NLKMRPPEYWVEDDGSITKIRHAETFEDHLRFFNGL" ORIGIN 1 cgtgctctca gttgccaaga ttattaaata cagtactaat tcaatagctt gaactatact 61 gtagtagtta aattctatcc aatattttat cctttaccaa cccgcgagtg tgttcttcaa 121 aatgtctgaa gtctgaacag attatggata catcatacat ccaataacaa atgtcaaata 181 gtattgttta ctctaattaa taacaagtgg caaaatactg ttttctgctc ttgatcaata 241 ctactaatac tagaatgttg gttatggaaa gtttgggcct tatattttgt ttcacgttct 301 ctatggctct tggatgaaag cgtttgttga gtgcaacaga tcaatggtaa ccccatggag 361 ttctcaatat aaaattttca aaatacatat ttatatatgt atgtataata aatattagta 421 tttaattgtg tataatttta aaatagcact caacaaacgt ttttacacaa catgcaataa 481 aaaactcgtt tcaaaaacct gccctgtaaa ccgtactact cttttcctct ttaacgagaa 541 ctaagaagca tctctcctac aaatagttta caaaagatgg gtattcacgt caaatattta 601 tgttattacg ccgtgatgat ggattctcaa gatacttgac actgctcata tgatatgaca 661 gaacaaagga agaagtaaaa aagacatgtg tgactgtgaa atcagctact tctgttttac 721 tgaaacatgg ttcttcagat atagagatac agagagcata gtgaatcaga tacgcacaat 781 acaaaagatc aaacaacaac taaaacttat aatgtgataa tctgtctgat gcgaaaacaa 841 aaaatatttg gaatcatctg aaattatttt aatccaacct tctttctttg caggccttct 901 acttctagtt tggttggttg attttcttct ttgagatttt tcccttaggt ttaagaaagc 961 tatacaaaat agggaataaa caatacataa ttaattgatt cactgagaca aatctagtat 1021 atagttttag tttaaaaaaa aaacgagaag attacctctt taacgacgtg tggggcttat 1081 tcttctgcgt tcggttcggc caaaacggtt gataaaccac tctggtttgt aggaaaccac 1141 tatgtatccc accgtgaatc caaatgcaat actagctctt gtggaattgc tcccgtaagc 1201 ttgtttctgg aaaggtccag tgactcgaga gacgagaggt tccccataga tgacgggatg 1261 tggccagtga aagcattgcc tgataagttg aggacaagga gctctttcaa caaaccgatg 1321 gacgatggaa tcactccttc aaattcgttc tccgaaaagt ctagagcggt gtagattgtt 1381 aagatacgta ccagctccat ctctacacct ttgttcatca aaaccattga atcaaaataa 1441 tagtatatac tcatgtactg tccgtaagat tgatcttcat cttttccaat agagtgcatt 1501 gctgtccaat taacaaagaa gtccgatggc aacgttccgt tgaaccgatt atgcgatata 1561 tcgatgatcc gcagtttaga aaaccgagtt tgatgtactg gtccatggaa tgcattggag 1621 cgaaggacaa gaacttgtag ctcggggaga gaactcagcc aggatggaaa cgtgtcgttg 1681 aatctgttgc tttccacgtt caaaacttcg agaaaagagc taacgatcaa agatcttgga 1741 agctttccca caaaattgtt atgaccgatg tccaaagact ttagacctct tgatataatc 1801 ttctttggaa gacgtccgct gagacgattt tgtctaagat ttagagcttc gagaaaacta 1861 ctgaactttc cgatacaacg tgggaatgaa ccgttgaatt tgttgttaga taaatcgaga 1921 acggtgagag agcgcaactc gcatatgaaa ctggggatcc tgcccgtgaa attgttattg 1981 gcgccggaaa agtattccag agaggatggt tgccggagtt tattcggact ttcgaaactg 2041 gtgaaagtgt tgttggaaag atccaggtat tgaagagttg atagctccca taaccatcca 2101 gggacttgac ctttgatttt gttgttggaa atgtctagtc tccacatgtt gtgttgagtt 2161 cgtaggggct ctagaaactt ggtggtgatt ccgcatcctg acaaatacag atagcttaat 2221 gacggatgat ctgatactga gcttcgcttt tcatacgtaa cgtggtttcc cgtgagattc 2281 agtttatcca gccacttgaa acgtgataag atatcattca agtcaatcgc agtggtggtg 2341 ttcaagtcgg agatgtcgag ttctacgagt gacttgagat tccagagaat gctaaggtca 2401 agtgctaagc cttgggtgtt gagatgcgaa aggtcaagtg tatcaaggtt gactaatttg 2461 gagatggatc tgggaatcga tcccacgaag ttgttattcc cgagtagtag ttgcattagc 2521 tttgatgatg aagatacgtt cccaaaatca agtgtaccgt ttagttggtt atcttccaaa 2581 gtaacgtaaa gcaaagaagg gatgctaaag agggaagaag gaagagttcc agttaaagcg 2641 ttgcaatcta tgtaaaagac ctccaagttg gagagtgagc ttacgttagg tggaagcatg 2701 cctgtgaact gattgtaatc gagtgataaa tctaacaatt ttgttagatt tagtagtgta 2761 acaggaatgt taccagtaag cttgttctgt tcagcggata agtcagtgag atgtttcaat 2821 ctgccgaaag aagatgggat tttaccaata aggttgttcc aggagagatt gagaatggtg 2881 aggttataaa gctttccaag tgaagatggg atttcaccat taaaagcatt atctgaaaga 2941 tcaagagtgg ttagcttaga aagatttcca agcgaagatg gaatgttacc actgaaataa 3001 ttgtctgaaa ggtcgagagt tgctaaaaaa ggaagacttt gaagcttcaa aatagtgttt 3061 ttggaattga gctcgccatg gatgcagttg ccaccaaggt tcagctcaat cacatcccca 3121 aaagtggcat cacatctgat accatcccaa gaacagcagt cgctgttatt cacccatgac 3181 accgtcttcg gagaccggtt aaaacaaggc ttctgaatct ggaactcctt cttcaactcc 3241 agaattgctt ccctttgttg aggatggcac aagtgcctag caggaaccgc aaactcatca 3301 cgaaataaga agagaaaaca aaaggaaata ggaatgagac taaatgattt cacagagcct 3361 ttcatattct ttacacagga aaatggaaac tgtgatgaac atgtttgcat gctcgcctta 3421 taagactata tacagtcttc ccccaccaca aatttctttt ccgtcttttt gtttttgttc 3481 ttttttccaa cttcttctcc ggtttattat tattttcttc gtatgacttt tctccctttt 3541 ggtaacgacg agtgtcgacg actcgcatgg ttgacttgac aatttatcca aattcatata 3601 gcttaattag tttgtactta tcctaattaa atttctataa gcaaaataac tcgctaactt 3661 ttttgacaaa aataaaactc actaatttac tctcgctgcc gcatatcaac gattatagac 3721 agtggcggag ccacagtgtt ggcacataga tcaactgacc caggtggatt ttctgttaaa 3781 aaatttttac ttgtataatt ctataaaaac tatgtaacta ttggtaaatt ttagctagat 3841 tacccctgta aaatatgtta acttttagag attgaccctc tcaaatgaat ttcctagctc 3901 cggccactga ttagagtgct agttaatttg ttgactgcgc aattatcgtg cgaaattatg 3961 tttccatcca aactctatta attttatctc tttactttgc attacaattg tttttttatt 4021 gaatacaatt aaacattcat attaaaatat tgcaaatttt gaataatgta attcatcgaa 4081 agtttgaaac agaaaccttt tagaagtgga aatccatttc gttaaatggt ttaactaagg 4141 gttcattaat atttctacac caagaggttt gagattcaaa tcccaaaaaa tacaaattat 4201 gaaaaaaaaa tagttataag agatttttag tatggtgcat ggcgtatcat cgaacatgaa 4261 tttcataggg cgactcagaa tgacccagtc aaacgtatat tctcatatga tgatagaatt 4321 gtcggataaa attgtcggct gtaatagcat aattaattag acgttaaaaa aaaaactttt 4381 tagaaagtga caataaatga ataatgtaat tcattgaaag tttgaaacag aaacctttta 4441 gaaagtgaca acaaatgaaa cataacgtaa ttcattttta gcgaatctat agtattacaa 4501 agagacctaa acaaatagaa gaatgtaata agtttgccca cgttacacgt agcattaata 4561 aatgagttta cgacttgact tttctttggg gtttcttcct gggctcatca cttaaatgac 4621 tcgtcacaaa ttacagcaga ccaacggttc aactaaccac cactccaagt catatcagcg 4681 gttatccaaa accggacccg acaaagccac gtgtaactta actctttgac aaaaccctag 4741 tttcagcgcc actgtttcag tctcacttcc aacaactcac aatctctcca ccagccatgg 4801 cgtcagctac tcagctcctc tcccaacctc catctctccg cggaaaccta aaccgatacc 4861 aatcctccct cccaagaatc tcggttctgt ctctcaagtc cacctcgaaa ccacttaacc 4921 gcctctccgt caaagccgcc gccgccgcat cccaaaactc ggtgataacc ccaacgaagg 4981 atgctgcgtt cgagcactgt ttcaagaagt cctcagatgg gttcctctac tgcgagggaa 5041 ctaaggttga agagatcatg gagagcgtcg agagaagacc tttctacttg tacagcaagc 5101 ctcagatcac gaggaacgtc gaggcgtaca aagaggcctt ggaaggtgtg agttccgtca 5161 ttggctatgc tattaaagcc aataacaacc tcaagattct ggagcatttg aggagtaaag 5221 gctgtggtgc tgtgc //